Query psy17380
Match_columns 107
No_of_seqs 109 out of 224
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 21:00:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17380.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17380hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g40_A Na-K-CL cotransporter; 98.7 1.1E-08 3.7E-13 81.0 5.4 65 2-70 156-231 (294)
2 3c0w_A Intron-encoded endonucl 38.9 12 0.0004 28.0 1.5 47 46-95 169-218 (235)
3 1wwj_A Circadian clock protein 36.5 65 0.0022 21.5 4.7 44 32-78 8-52 (105)
4 3l1w_A Uncharacterized protein 26.9 1E+02 0.0034 21.1 4.7 57 31-87 123-181 (257)
5 3g6s_A Putative endonuclease/e 25.7 1.3E+02 0.0045 20.7 5.1 35 52-87 153-187 (267)
6 1zwy_A Hypothetical UPF0244 pr 23.6 42 0.0014 24.3 2.2 48 34-82 13-63 (185)
7 2yhg_A SDE_182CT, cellulose-bi 22.8 1.2E+02 0.0039 24.9 4.8 79 13-97 12-98 (437)
8 2kmt_A CCDB; toxin; NMR {Vibri 22.5 22 0.00074 23.4 0.4 35 1-37 1-37 (105)
9 3mpr_A Putative endonuclease/e 21.2 2.3E+02 0.0077 20.1 6.0 35 53-87 158-193 (298)
10 3j20_A 30S ribosomal protein S 20.9 1.2E+02 0.004 22.2 4.2 29 31-59 114-147 (198)
11 1xvw_A Hypothetical protein RV 20.4 1.4E+02 0.0047 18.8 4.1 55 4-64 41-95 (160)
12 1vyb_A ORF2 contains A reverse 20.1 2E+02 0.0067 19.0 5.2 15 65-79 138-152 (238)
No 1
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=98.73 E-value=1.1e-08 Score=81.01 Aligned_cols=65 Identities=17% Similarity=0.240 Sum_probs=56.7
Q ss_pred cceeEE-------E----EecCCcchhhHHHHHhhCCCCCCCeeeEEEEecccchHHHHHHHHHHHHHhcCccCcceEEe
Q psy17380 2 AQLLFS-------L----ITLGEGLTLLLPYIISTRHSWASCKLRVFALANRKEELEFEQRNIASLLAKFRIDYADLIII 70 (107)
Q Consensus 2 ~~~dVw-------W----l~dDGGLtLLlpyLLt~~~~W~~cklRVf~~~~~~~~~~~~~~~m~~lL~kfRI~a~~v~Vv 70 (107)
-.|||| | .--.|+|++|++|+|.++ | +++||+.++..+.+..++.++.|.+|++..||++... ||
T Consensus 156 ~~IdvW~~~~~~~W~~g~~~~Ng~LmlllAylL~~n--W-~A~I~L~~vV~de~a~~~a~~~l~~Lv~~~Ri~a~~~-vv 231 (294)
T 3g40_A 156 NLINLWIENRGLDWDISMELGNMDLALLIAYKLKSN--W-KASLSFMTFAPTAIQAQAAENFLQSLAELARIPNVKM-QV 231 (294)
T ss_dssp CEEEEECCCC---CCCCSCCCTTHHHHHHHHHHHHH--H-TCEEEEEEECSSHHHHHHHHHHHHHHHHHHTCCSCEE-EE
T ss_pred ceEEEecCCCCCcccccccccchhHHHHHHHHHhhC--c-CCeEEEEEecCCHHHHHHHHHHHHHHHHHhcCCceEE-Ee
Confidence 369999 7 345699999999999875 8 9999999988888889999999999999999999654 54
No 2
>3c0w_A Intron-encoded endonuclease I-SCEI; endonuclease, homing, ladlidadg, catalytic mechanism, metal binding; HET: DNA; 2.20A {Saccharomyces cerevisiae} PDB: 1r7m_A* 3c0x_A* 3ool_A 3oor_A
Probab=38.90 E-value=12 Score=28.00 Aligned_cols=47 Identities=19% Similarity=0.323 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhcCccCcceEEecCCCCC---CcHhhHHHHHHhccccccc
Q psy17380 46 LEFEQRNIASLLAKFRIDYADLIIITTITRR---PHEETVEFYNHLVRPYLAK 95 (107)
Q Consensus 46 ~~~~~~~m~~lL~kfRI~a~~v~Vv~di~~~---P~~~t~~~f~~li~p~rl~ 95 (107)
.++.+.-...|..+|-|++ .|.--. +.. =..+++..|.++|.||-..
T Consensus 169 ~~ev~~L~~~L~~kf~L~~-~i~~~~--~~y~Iyi~~~s~~~f~~lI~PYi~p 218 (235)
T 3c0w_A 169 FEEVEYLVKGLRNKFQLNC-YVKINK--NKPIIYIDSMSYLIFYNLIKPYLIP 218 (235)
T ss_dssp HHHHHHHHHHHHHHHCCCE-EEEEET--TEEEEEECGGGHHHHHHHHGGGCCG
T ss_pred HHHHHHHHHHHHHhcCeEE-EEEecC--CEEEEEEeHHHHHHHHHHhhhhccH
Confidence 4444444556678899988 443211 110 1256788999999999864
No 3
>1wwj_A Circadian clock protein KAIB; 1.90A {Synechocystis SP} PDB: 1r5p_A 2qke_A 1vgl_A
Probab=36.49 E-value=65 Score=21.49 Aligned_cols=44 Identities=16% Similarity=0.272 Sum_probs=25.6
Q ss_pred CeeeEEEEecccchHHHHHHHHHHHHHhcC-ccCcceEEecCCCCCCc
Q psy17380 32 CKLRVFALANRKEELEFEQRNIASLLAKFR-IDYADLIIITTITRRPH 78 (107)
Q Consensus 32 cklRVf~~~~~~~~~~~~~~~m~~lL~kfR-I~a~~v~Vv~di~~~P~ 78 (107)
-.||+| |+++.-+....-+++.++|+.+- =.| ++.|| |+.+.|.
T Consensus 8 ~~L~Ly-VaG~tp~S~~ai~nL~~i~e~~l~~~y-~LeVI-Dv~~~Pe 52 (105)
T 1wwj_A 8 YVLKLY-VAGNTPNSVRALKMLKNILEQEFQGVY-ALKVI-DVLKNPQ 52 (105)
T ss_dssp EEEEEE-ESSCCHHHHHHHHHHHHHHHHHHTTSE-EEEEE-ETTTCCS
T ss_pred eEEEEE-EeCCCchHHHHHHHHHHHHHHhcCCCe-EEEEE-EcccCHh
Confidence 579999 77666566666666766665432 122 23333 4566665
No 4
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=26.94 E-value=1e+02 Score=21.12 Aligned_cols=57 Identities=9% Similarity=0.130 Sum_probs=29.5
Q ss_pred CCeeeEEEEecccchHHHHHHHHHHHHHhcC--ccCcceEEecCCCCCCcHhhHHHHHH
Q psy17380 31 SCKLRVFALANRKEELEFEQRNIASLLAKFR--IDYADLIIITTITRRPHEETVEFYNH 87 (107)
Q Consensus 31 ~cklRVf~~~~~~~~~~~~~~~m~~lL~kfR--I~a~~v~Vv~di~~~P~~~t~~~f~~ 87 (107)
+.+++|+++--.....+.-...+..++...+ +....|.+.+|.|..|.......+..
T Consensus 123 g~~~~v~~~Hl~~~~~~~r~~q~~~l~~~i~~~~~~~pvil~GDfN~~~~~~~~~~l~~ 181 (257)
T 3l1w_A 123 NTPFLVINVHLDHISAHARLAGMTVILEELHDKIAQYPTLLMGDFNAESGEEVHQLVQK 181 (257)
T ss_dssp SSCEEEEEEECCSSCHHHHHHHHHHHHHHTHHHHHHSCEEEEEECCCCTTSHHHHHHTT
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHcCCCCEEEEeeCCCCCCcHHHHHhhh
Confidence 4567776442221111222223344444333 22226778899999998776665543
No 5
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=25.65 E-value=1.3e+02 Score=20.69 Aligned_cols=35 Identities=6% Similarity=0.008 Sum_probs=24.0
Q ss_pred HHHHHHHhcCccCcceEEecCCCCCCcHhhHHHHHH
Q psy17380 52 NIASLLAKFRIDYADLIIITTITRRPHEETVEFYNH 87 (107)
Q Consensus 52 ~m~~lL~kfRI~a~~v~Vv~di~~~P~~~t~~~f~~ 87 (107)
.+...+.++.=+. .+.+.+|.|..|.....+.+..
T Consensus 153 ~l~~~l~~~~~~~-pvIl~GDfN~~~~~~~~~~l~~ 187 (267)
T 3g6s_A 153 LIIRKIKEIVGER-PAVVTGDFNVTDASDAYETITT 187 (267)
T ss_dssp HHHHHHHHHTTTS-CEEEEEECSSCTTSHHHHHHHS
T ss_pred HHHHHHHHhcCCC-CEEEEeECCCCCCCHHHHHhhc
Confidence 4445555543233 6778899999999887776665
No 6
>1zwy_A Hypothetical UPF0244 protein VC0702; hypothetical protein, structural genomics, PSI, protein STRU initiative; 1.90A {Vibrio cholerae} SCOP: c.51.4.3 PDB: 1zno_A
Probab=23.63 E-value=42 Score=24.28 Aligned_cols=48 Identities=8% Similarity=0.280 Sum_probs=32.1
Q ss_pred eeEEEEec-ccchHHHHHHHHHHHHHhcCccCcceEEecCCCCCCcH--hhH
Q psy17380 34 LRVFALAN-RKEELEFEQRNIASLLAKFRIDYADLIIITTITRRPHE--ETV 82 (107)
Q Consensus 34 lRVf~~~~-~~~~~~~~~~~m~~lL~kfRI~a~~v~Vv~di~~~P~~--~t~ 82 (107)
++|. +++ +.-+++..+..+..+.-...++...+.|-++++.+|-. +|.
T Consensus 13 ~~V~-VgS~NPvKi~Av~~Af~~~f~~~~~~v~~v~v~SgV~~QP~g~eET~ 63 (185)
T 1zwy_A 13 RKII-IASQNPAKVNAVRSAFSTVFPDQEWEFIGVSVPSEVADQPMSDEETK 63 (185)
T ss_dssp CEEE-ESCCCHHHHHHHHHHHHHHCTTCCCEEEECCCCCSSCSSCCSHHHHH
T ss_pred eEEE-EeCCCHHHHHHHHHHHHHhcCCCcEEEEEecCCCCcCCCCCCHHHHH
Confidence 5665 554 44667888888876665344555556677899999974 665
No 7
>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside hydrolase; HET: BTB; 1.08A {Saccharophagus degradans}
Probab=22.81 E-value=1.2e+02 Score=24.89 Aligned_cols=79 Identities=14% Similarity=0.176 Sum_probs=38.3
Q ss_pred CcchhhHHHHHhhCCCCCCCeeeEEEEecccchHHHHHHHHHHHHH--hcCccCcceEEecCC--CCCCcHhh----HHH
Q psy17380 13 EGLTLLLPYIISTRHSWASCKLRVFALANRKEELEFEQRNIASLLA--KFRIDYADLIIITTI--TRRPHEET----VEF 84 (107)
Q Consensus 13 GGLtLLlpyLLt~~~~W~~cklRVf~~~~~~~~~~~~~~~m~~lL~--kfRI~a~~v~Vv~di--~~~P~~~t----~~~ 84 (107)
.||..+ +|-+.... ..|.|||+.+.-.++.+..+.-...||+ +|+|.. ++.-+-. ..++..+. ++.
T Consensus 12 ~~~~~~-~~~~~~~~---~~k~RviI~TDi~nEpDD~~Slvr~Llysn~~dieG--ivat~s~~~~~~~~~~~i~~ii~a 85 (437)
T 2yhg_A 12 SGLVPR-GSHMARGE---GGRYRVIHTTDMGADPDDEQSLVRQLVMANEYDLEG--IITTTGCWKKSTSNTAYVDRILNA 85 (437)
T ss_dssp -------------------CCCEEEEEECTTSCTHHHHHHHHHHHTGGGSEEEE--EEECCBTTBCCCCCCHHHHHHHHH
T ss_pred CCcccc-cccccccc---cCCceEEEeCCCCCCCccHHHHHHHHhCcccceEeE--EEEecccccCCCCCHHHHHHHHHH
Confidence 454432 34444443 3789999555444556666666677788 577765 4222222 12233222 367
Q ss_pred HHHhccccccccC
Q psy17380 85 YNHLVRPYLAKDE 97 (107)
Q Consensus 85 f~~li~p~rl~e~ 97 (107)
++++.....++++
T Consensus 86 Y~~v~~nL~~h~~ 98 (437)
T 2yhg_A 86 YSQAYPNLSKHAE 98 (437)
T ss_dssp HHHHHHHHTTTST
T ss_pred HHHHHHHHHhhcC
Confidence 8888877777644
No 8
>2kmt_A CCDB; toxin; NMR {Vibrio fischeri} PDB: 3jrz_A 3jsc_A 3ku8_C* 3kua_C*
Probab=22.55 E-value=22 Score=23.42 Aligned_cols=35 Identities=14% Similarity=0.225 Sum_probs=22.3
Q ss_pred CcceeEEEEecCCc-chhhHHHHHh-hCCCCCCCeeeEE
Q psy17380 1 MAQLLFSLITLGEG-LTLLLPYIIS-TRHSWASCKLRVF 37 (107)
Q Consensus 1 ~~~~dVwWl~dDGG-LtLLlpyLLt-~~~~W~~cklRVf 37 (107)
|+|.||||-- |. ---..||++- |+.--..-.-||.
T Consensus 1 m~qfdVy~np--~~~~~~~~P~~vdvQsdll~~L~trvV 37 (105)
T 2kmt_A 1 MSQFTLYKNK--DKSSAKTYPYFVDVQSDLLDNLNTRLV 37 (105)
T ss_dssp CCSSCEECCS--SGGGGGTCCCEEBCSCSSSSSSSCCEE
T ss_pred CCCeEEEeCC--CccccccccEEEEechHHhCcCCcEEE
Confidence 8999999933 32 2224567665 5555566677775
No 9
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=21.21 E-value=2.3e+02 Score=20.12 Aligned_cols=35 Identities=3% Similarity=0.084 Sum_probs=23.0
Q ss_pred HHHHHHhcCc-cCcceEEecCCCCCCcHhhHHHHHH
Q psy17380 53 IASLLAKFRI-DYADLIIITTITRRPHEETVEFYNH 87 (107)
Q Consensus 53 m~~lL~kfRI-~a~~v~Vv~di~~~P~~~t~~~f~~ 87 (107)
+...+.++.- .-..|.|.+|.|..|.....+.+..
T Consensus 158 l~~~i~~~~~~~~~pvIl~GDfN~~~~~~~~~~l~~ 193 (298)
T 3mpr_A 158 VQEKMKELGRGKNLPAILTGDFNVDQTHQSYDAFVS 193 (298)
T ss_dssp HHHHHHHTTTTSCCCEEEEEECSSCTTSHHHHHHHT
T ss_pred HHHHHHHHhcCCCCcEEEEEeCCCCCCCHHHHHHhc
Confidence 3444555442 2236778899999999887776654
No 10
>3j20_A 30S ribosomal protein S3AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.92 E-value=1.2e+02 Score=22.20 Aligned_cols=29 Identities=24% Similarity=0.302 Sum_probs=20.8
Q ss_pred CCeeeEEEEecc-----cchHHHHHHHHHHHHHh
Q psy17380 31 SCKLRVFALANR-----KEELEFEQRNIASLLAK 59 (107)
Q Consensus 31 ~cklRVf~~~~~-----~~~~~~~~~~m~~lL~k 59 (107)
|..||||+++-. .....+.++.|...+.+
T Consensus 114 Gy~lRvf~i~fT~kra~~sQ~~~IRk~m~eii~~ 147 (198)
T 3j20_A 114 GYKLRVMAMAIAMRRIQTSQERAIRKIMQEIIYK 147 (198)
T ss_dssp SCEEEEEEEEEECSSCCCTHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEEEEeccccchhhhHHHHHHHHHHHH
Confidence 678999988643 24567778888777664
No 11
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Probab=20.40 E-value=1.4e+02 Score=18.81 Aligned_cols=55 Identities=7% Similarity=-0.020 Sum_probs=36.5
Q ss_pred eeEEEEecCCcchhhHHHHHhhCCCCCCCeeeEEEEecccchHHHHHHHHHHHHHhcCccC
Q psy17380 4 LLFSLITLGEGLTLLLPYIISTRHSWASCKLRVFALANRKEELEFEQRNIASLLAKFRIDY 64 (107)
Q Consensus 4 ~dVwWl~dDGGLtLLlpyLLt~~~~W~~cklRVf~~~~~~~~~~~~~~~m~~lL~kfRI~a 64 (107)
|++||-..-+.=...+|.|-.-.+..++-.++|++|..+ .. ..+..++.++.+++
T Consensus 41 l~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d--~~----~~~~~~~~~~~~~~ 95 (160)
T 1xvw_A 41 LVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVG--PP----PTHKIWATQSGFTF 95 (160)
T ss_dssp EEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESC--CH----HHHHHHHHHHTCCS
T ss_pred EEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCC--CH----HHHHHHHHhcCCCc
Confidence 445545555665667888877777777667888877663 22 24566777787776
No 12
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=20.15 E-value=2e+02 Score=19.00 Aligned_cols=15 Identities=7% Similarity=0.140 Sum_probs=11.4
Q ss_pred cceEEecCCCCCCcH
Q psy17380 65 ADLIIITTITRRPHE 79 (107)
Q Consensus 65 ~~v~Vv~di~~~P~~ 79 (107)
..+.|.+|.|..|..
T Consensus 138 ~~~Il~GDFN~~~~~ 152 (238)
T 1vyb_A 138 SHTLIMGDFNTPLST 152 (238)
T ss_dssp TTEEEEEECSSCSSG
T ss_pred CCEEEEccCCCCCCc
Confidence 367788999997764
Done!