BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17381
         (169 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1CC1|L Chain L, Crystal Structure Of A Reduced, Active Form Of The
           Ni-Fe-Se Hydrogenase From Desulfomicrobium Baculatum
          Length = 498

 Score = 28.5 bits (62), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 12/75 (16%)

Query: 3   GWLGLVRAREISKSDTFVETICAAFPSAALSRGVYSEQALRSRFIGVQDSAYRVALVPDE 62
           G+  ++R R+   S   V+ IC   P+A  +  V +           QD A+ V +  + 
Sbjct: 49  GFEQILRGRDPRDSSQIVQRICGVCPTAHCTASVMA-----------QDDAFGVKVTTNG 97

Query: 63  SASLPLVF-LSYLQS 76
             +  L+F  +YLQS
Sbjct: 98  RITRNLIFGANYLQS 112


>pdb|2PX7|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phosphate
           Cytidylyltransferase From Thermus Thermophilus Hb8
 pdb|2PX7|B Chain B, Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phosphate
           Cytidylyltransferase From Thermus Thermophilus Hb8
          Length = 236

 Score = 27.3 bits (59), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 9/75 (12%)

Query: 18  TFVETICAAFPSAA-----LSRGVYSEQALRSRFIGVQDSAYRVALVPD--ESASLPLVF 70
           T +E   AAF  AA     L  G    + L + F+  +  A R A V    E+ASLPLV 
Sbjct: 53  TLLEWTLAAFRDAAEVLVALPPGAEPPKGLGAVFL--EGGATRQASVARLLEAASLPLVL 110

Query: 71  LSYLQSLFIIRGLAA 85
           +  +   F+ RGL A
Sbjct: 111 VHDVARPFVSRGLVA 125


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.132    0.364 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,218,568
Number of Sequences: 62578
Number of extensions: 143662
Number of successful extensions: 327
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 326
Number of HSP's gapped (non-prelim): 7
length of query: 169
length of database: 14,973,337
effective HSP length: 92
effective length of query: 77
effective length of database: 9,216,161
effective search space: 709644397
effective search space used: 709644397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)