Query psy17381
Match_columns 169
No_of_seqs 100 out of 189
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 21:02:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17381.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17381hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gyz_A Chaperone protein IPGC; 48.8 19 0.00065 25.9 4.0 56 103-159 35-91 (151)
2 3urz_A Uncharacterized protein 45.9 37 0.0013 24.8 5.4 28 103-130 3-30 (208)
3 3ma5_A Tetratricopeptide repea 41.3 24 0.00083 22.7 3.3 27 103-129 6-32 (100)
4 2xcb_A PCRH, regulatory protei 40.2 24 0.0008 24.1 3.2 27 103-129 17-43 (142)
5 2kc7_A BFR218_protein; tetratr 38.4 29 0.00099 21.6 3.2 21 108-128 4-24 (99)
6 2oo2_A Hypothetical protein AF 37.1 30 0.001 23.9 3.2 25 104-128 35-59 (86)
7 2pmr_A Uncharacterized protein 36.7 30 0.001 23.8 3.2 35 105-147 40-74 (87)
8 2r5s_A Uncharacterized protein 36.4 37 0.0013 23.9 3.9 28 103-130 39-66 (176)
9 2yhc_A BAMD, UPF0169 lipoprote 34.5 34 0.0012 25.3 3.5 28 103-130 3-30 (225)
10 2kat_A Uncharacterized protein 33.5 59 0.002 20.8 4.3 26 103-128 18-43 (115)
11 2crb_A Nuclear receptor bindin 33.3 42 0.0014 23.7 3.5 37 109-153 20-56 (97)
12 2vgx_A Chaperone SYCD; alterna 32.6 33 0.0011 23.9 3.0 27 103-129 20-46 (148)
13 2lni_A Stress-induced-phosphop 32.4 44 0.0015 21.3 3.4 27 103-129 15-41 (133)
14 2xev_A YBGF; tetratricopeptide 31.4 97 0.0033 19.7 5.1 27 104-130 76-102 (129)
15 2kck_A TPR repeat; tetratricop 31.4 40 0.0014 20.6 3.0 49 103-151 39-89 (112)
16 3gyz_A Chaperone protein IPGC; 31.3 83 0.0028 22.4 5.1 45 103-152 103-150 (151)
17 2nsz_A Programmed cell death p 30.5 1.5E+02 0.005 21.1 6.7 43 106-148 9-53 (129)
18 2l6j_A TPR repeat-containing p 30.5 46 0.0016 20.7 3.2 27 103-129 37-63 (111)
19 3bee_A Putative YFRE protein; 30.4 57 0.0019 21.5 3.8 28 103-130 42-69 (93)
20 4i17_A Hypothetical protein; T 28.5 66 0.0023 23.2 4.2 27 103-129 6-32 (228)
21 1elw_A TPR1-domain of HOP; HOP 28.4 80 0.0027 19.3 4.1 27 103-129 37-63 (118)
22 3efd_K KCSA; helix bundle, C-t 28.0 42 0.0014 18.6 2.2 14 40-53 14-27 (30)
23 2ion_A PDCD4, programmed cell 27.8 1.8E+02 0.0062 21.3 6.8 57 106-162 11-71 (152)
24 3upv_A Heat shock protein STI1 26.9 50 0.0017 21.4 3.0 27 103-129 37-63 (126)
25 3q49_B STIP1 homology and U bo 26.5 80 0.0027 20.4 4.0 27 103-129 8-34 (137)
26 3u4t_A TPR repeat-containing p 26.3 41 0.0014 24.7 2.7 27 103-129 2-28 (272)
27 3qky_A Outer membrane assembly 25.8 87 0.003 23.2 4.5 28 103-130 14-41 (261)
28 2dba_A Smooth muscle cell asso 25.6 1.4E+02 0.0047 19.2 7.8 51 102-152 26-79 (148)
29 3sz7_A HSC70 cochaperone (SGT) 25.5 53 0.0018 22.6 3.0 27 103-129 10-36 (164)
30 3twe_A Alpha4H; unknown functi 24.4 72 0.0025 17.0 2.6 16 39-54 10-25 (27)
31 1na3_A Designed protein CTPR2; 24.4 1E+02 0.0034 18.2 3.9 27 103-129 42-68 (91)
32 3hm5_A DNA methyltransferase 1 24.0 65 0.0022 22.4 3.1 25 36-60 66-90 (93)
33 3ieg_A DNAJ homolog subfamily 23.8 67 0.0023 24.2 3.5 26 103-128 36-61 (359)
34 3qou_A Protein YBBN; thioredox 23.8 56 0.0019 25.4 3.1 27 103-129 116-142 (287)
35 4iej_A DNA methyltransferase 1 23.6 64 0.0022 22.5 3.0 23 35-57 65-87 (93)
36 3u64_A Protein TP_0956; tetrat 23.2 1.6E+02 0.0055 24.6 6.0 54 103-156 238-293 (301)
37 3upv_A Heat shock protein STI1 22.6 1.1E+02 0.0038 19.7 4.1 29 101-129 69-97 (126)
38 1qsa_A Protein (soluble lytic 22.6 1.4E+02 0.0049 27.0 6.0 45 101-145 151-195 (618)
39 2pm7_A Protein WEB1, protein t 22.4 1.2E+02 0.0041 26.1 5.2 28 106-133 338-365 (399)
40 2zzd_B Thiocyanate hydrolase s 21.7 66 0.0023 24.5 3.0 37 17-53 106-142 (157)
41 3sz7_A HSC70 cochaperone (SGT) 20.9 1E+02 0.0034 21.1 3.7 50 102-151 77-130 (164)
42 2vyi_A SGTA protein; chaperone 20.8 81 0.0028 19.6 3.0 25 104-128 12-36 (131)
43 3rkv_A Putative peptidylprolyl 20.8 2E+02 0.0069 19.4 6.9 48 103-150 96-146 (162)
44 3q49_B STIP1 homology and U bo 20.6 1.3E+02 0.0044 19.3 4.1 27 103-129 42-68 (137)
45 2pl2_A Hypothetical conserved 20.4 2.4E+02 0.0082 20.4 6.0 27 103-129 38-64 (217)
46 1hxi_A PEX5, peroxisome target 20.1 1.9E+02 0.0066 18.9 5.7 27 103-129 50-76 (121)
47 3e21_A HFAF1, FAS-associated f 20.1 73 0.0025 19.2 2.4 18 108-125 21-40 (45)
No 1
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=48.83 E-value=19 Score=25.93 Aligned_cols=56 Identities=14% Similarity=0.059 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHccCC-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17381 103 NTYEILERARYFVDRSDLLQAVKYMNLLQG-GAKAVSQQWIADTLVYLETETAAKALL 159 (169)
Q Consensus 103 d~~~vLsRA~~~L~~gdL~~Avrel~~L~G-~ar~va~dWl~~AR~rLE~~qa~~~L~ 159 (169)
+++.....+..+.+.|+++.|++..+.+-- .|. -..-|..-+..+....+--+.+.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~ 91 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAAD 91 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHH
Confidence 556677777777777777777777775321 221 12235555555554443333333
No 2
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=45.92 E-value=37 Score=24.80 Aligned_cols=28 Identities=21% Similarity=0.269 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHcc
Q psy17381 103 NTYEILERARYFVDRSDLLQAVKYMNLL 130 (169)
Q Consensus 103 d~~~vLsRA~~~L~~gdL~~Avrel~~L 130 (169)
+++..+.++..++..|+++.|+..+++.
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~a 30 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQT 30 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5779999999999999999999999964
No 3
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=41.27 E-value=24 Score=22.73 Aligned_cols=27 Identities=7% Similarity=0.139 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHc
Q psy17381 103 NTYEILERARYFVDRSDLLQAVKYMNL 129 (169)
Q Consensus 103 d~~~vLsRA~~~L~~gdL~~Avrel~~ 129 (169)
|+......+..++..|+.+.|++.++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~ 32 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEE 32 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 677778888888888888888888775
No 4
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=40.15 E-value=24 Score=24.07 Aligned_cols=27 Identities=7% Similarity=-0.085 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHc
Q psy17381 103 NTYEILERARYFVDRSDLLQAVKYMNL 129 (169)
Q Consensus 103 d~~~vLsRA~~~L~~gdL~~Avrel~~ 129 (169)
+.+..+..+..++..|+++.|++.+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~ 43 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQA 43 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 456777778888888888888877775
No 5
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=38.38 E-value=29 Score=21.60 Aligned_cols=21 Identities=14% Similarity=0.414 Sum_probs=10.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q psy17381 108 LERARYFVDRSDLLQAVKYMN 128 (169)
Q Consensus 108 LsRA~~~L~~gdL~~Avrel~ 128 (169)
+.++..++..|+.+.|++.++
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~ 24 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALE 24 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHH
Confidence 344445555555555555444
No 6
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=37.14 E-value=30 Score=23.85 Aligned_cols=25 Identities=24% Similarity=0.554 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH
Q psy17381 104 TYEILERARYFVDRSDLLQAVKYMN 128 (169)
Q Consensus 104 ~~~vLsRA~~~L~~gdL~~Avrel~ 128 (169)
..+=++.+++|++.||+..|+..++
T Consensus 35 A~~Y~~Da~~fl~kGD~v~Ala~is 59 (86)
T 2oo2_A 35 IEAYISDSRYFLEKGDLVRAFECVV 59 (86)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3455778999999999999998776
No 7
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=36.73 E-value=30 Score=23.82 Aligned_cols=35 Identities=6% Similarity=0.276 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHccCChhHHHHHHHHHHHHH
Q psy17381 105 YEILERARYFVDRSDLLQAVKYMNLLQGGAKAVSQQWIADTLV 147 (169)
Q Consensus 105 ~~vLsRA~~~L~~gdL~~Avrel~~L~G~ar~va~dWl~~AR~ 147 (169)
.+=++.++++++.||+..|+..++ -+..||+.+|.
T Consensus 40 ~~Y~~Da~~fl~kGD~v~Ala~is--------Ya~GwLDAlR~ 74 (87)
T 2pmr_A 40 LNYRDDSVYYLEKGDHITSFGCIT--------YAHGLLDSLRM 74 (87)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH--------HHHHHHHHHHH
Confidence 355778999999999999998776 45667777553
No 8
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=36.42 E-value=37 Score=23.90 Aligned_cols=28 Identities=11% Similarity=0.141 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHcc
Q psy17381 103 NTYEILERARYFVDRSDLLQAVKYMNLL 130 (169)
Q Consensus 103 d~~~vLsRA~~~L~~gdL~~Avrel~~L 130 (169)
++......+..++..|+.+.|++.++..
T Consensus 39 ~~~a~~~la~~~~~~g~~~~A~~~~~~a 66 (176)
T 2r5s_A 39 RGDVKLAKADCLLETKQFELAQELLATI 66 (176)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 5566666777777777777777777754
No 9
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=34.52 E-value=34 Score=25.26 Aligned_cols=28 Identities=21% Similarity=0.231 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHcc
Q psy17381 103 NTYEILERARYFVDRSDLLQAVKYMNLL 130 (169)
Q Consensus 103 d~~~vLsRA~~~L~~gdL~~Avrel~~L 130 (169)
++...+.++..++..|+.+.|+..++.+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~ 30 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEAL 30 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4456666666666667777666666653
No 10
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=33.48 E-value=59 Score=20.82 Aligned_cols=26 Identities=8% Similarity=0.142 Sum_probs=14.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy17381 103 NTYEILERARYFVDRSDLLQAVKYMN 128 (169)
Q Consensus 103 d~~~vLsRA~~~L~~gdL~~Avrel~ 128 (169)
++......+..+...|+.+.|++.+.
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~ 43 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLR 43 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 34455555555555555555555554
No 11
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=33.27 E-value=42 Score=23.72 Aligned_cols=37 Identities=14% Similarity=0.284 Sum_probs=24.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHccCChhHHHHHHHHHHHHHHHHHHH
Q psy17381 109 ERARYFVDRSDLLQAVKYMNLLQGGAKAVSQQWIADTLVYLETET 153 (169)
Q Consensus 109 sRA~~~L~~gdL~~Avrel~~L~G~ar~va~dWl~~AR~rLE~~q 153 (169)
-||+.++..|.++.|+..-. -+.+.|.+|-+.-..+|
T Consensus 20 RrAe~ll~~gkydeAIech~--------kAa~yL~eAmkltqs~q 56 (97)
T 2crb_A 20 RRADRLLAAGKYEEAISCHR--------KATTYLSEAMKLTESEQ 56 (97)
T ss_dssp HHHHHHHHTTCHHHHHHHHH--------HHHHHHHHHHTTCCCHH
T ss_pred hHHHHHHhcCCHHHHHHHHH--------HHHHHHHHHHHhhccHH
Confidence 47999999999999987633 34455555544433333
No 12
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=32.60 E-value=33 Score=23.91 Aligned_cols=27 Identities=7% Similarity=-0.090 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHc
Q psy17381 103 NTYEILERARYFVDRSDLLQAVKYMNL 129 (169)
Q Consensus 103 d~~~vLsRA~~~L~~gdL~~Avrel~~ 129 (169)
+.+.....+..++..|+++.|++.++.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~ 46 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQA 46 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 455667777777777777777777764
No 13
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=32.41 E-value=44 Score=21.25 Aligned_cols=27 Identities=15% Similarity=0.116 Sum_probs=15.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHc
Q psy17381 103 NTYEILERARYFVDRSDLLQAVKYMNL 129 (169)
Q Consensus 103 d~~~vLsRA~~~L~~gdL~~Avrel~~ 129 (169)
++.+....+..+...|+.+.|++.++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~ 41 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTE 41 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455555666666666666666665553
No 14
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=31.45 E-value=97 Score=19.70 Aligned_cols=27 Identities=7% Similarity=-0.031 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcc
Q psy17381 104 TYEILERARYFVDRSDLLQAVKYMNLL 130 (169)
Q Consensus 104 ~~~vLsRA~~~L~~gdL~~Avrel~~L 130 (169)
++..+..+..+...|+.+.|...++.+
T Consensus 76 ~~~~~~la~~~~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 76 AGGLLKLGLSQYGEGKNTEAQQTLQQV 102 (129)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 567888999999999999999998864
No 15
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=31.36 E-value=40 Score=20.59 Aligned_cols=49 Identities=12% Similarity=0.060 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHcc-CChhH-HHHHHHHHHHHHHHHH
Q psy17381 103 NTYEILERARYFVDRSDLLQAVKYMNLL-QGGAK-AVSQQWIADTLVYLET 151 (169)
Q Consensus 103 d~~~vLsRA~~~L~~gdL~~Avrel~~L-~G~ar-~va~dWl~~AR~rLE~ 151 (169)
+.......+..+...|+.+.|+..+++. +-.|. .-..-|..-++.+...
T Consensus 39 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~ 89 (112)
T 2kck_A 39 ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYI 89 (112)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHH
Confidence 4567788888888999999998888753 22222 0223455555555444
No 16
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=31.33 E-value=83 Score=22.35 Aligned_cols=45 Identities=11% Similarity=0.149 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHc---cCChhHHHHHHHHHHHHHHHHHH
Q psy17381 103 NTYEILERARYFVDRSDLLQAVKYMNL---LQGGAKAVSQQWIADTLVYLETE 152 (169)
Q Consensus 103 d~~~vLsRA~~~L~~gdL~~Avrel~~---L~G~ar~va~dWl~~AR~rLE~~ 152 (169)
++......+..++..|+.+.|++.++. +.+.+ ++-+.|+..|++-
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~-----~~~~~A~~ll~~l 150 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE-----KLKIKAQSYLDAI 150 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-----HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH-----HHHHHHHHHHHhh
Confidence 677889999999999999999999885 33332 2666677666653
No 17
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=30.52 E-value=1.5e+02 Score=21.10 Aligned_cols=43 Identities=16% Similarity=0.043 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHccCC--hhHHHHHHHHHHHHHH
Q psy17381 106 EILERARYFVDRSDLLQAVKYMNLLQG--GAKAVSQQWIADTLVY 148 (169)
Q Consensus 106 ~vLsRA~~~L~~gdL~~Avrel~~L~G--~ar~va~dWl~~AR~r 148 (169)
.+-+--+.|+..||++.|++.+.-|+- -...+...|+..+--+
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~ 53 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLES 53 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcC
Confidence 444556889999999999999998853 4567888999988765
No 18
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=30.50 E-value=46 Score=20.67 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHc
Q psy17381 103 NTYEILERARYFVDRSDLLQAVKYMNL 129 (169)
Q Consensus 103 d~~~vLsRA~~~L~~gdL~~Avrel~~ 129 (169)
++.....++..++..|+.+.|++.++.
T Consensus 37 ~~~~~~~lg~~~~~~g~~~~A~~~~~~ 63 (111)
T 2l6j_A 37 NPVGYSNKAMALIKLGEYTQAIQMCQQ 63 (111)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 555666666666677777777666663
No 19
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=30.38 E-value=57 Score=21.53 Aligned_cols=28 Identities=18% Similarity=0.012 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHcc
Q psy17381 103 NTYEILERARYFVDRSDLLQAVKYMNLL 130 (169)
Q Consensus 103 d~~~vLsRA~~~L~~gdL~~Avrel~~L 130 (169)
++.+.+-.+..+.+.||.+.|++....+
T Consensus 42 ~~rA~~~lg~~~~~~g~y~~Ai~~w~~~ 69 (93)
T 3bee_A 42 NEAALSLIANDHFISFRFQEAIDTWVLL 69 (93)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6778888899999999999999998864
No 20
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=28.55 E-value=66 Score=23.18 Aligned_cols=27 Identities=4% Similarity=0.037 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHc
Q psy17381 103 NTYEILERARYFVDRSDLLQAVKYMNL 129 (169)
Q Consensus 103 d~~~vLsRA~~~L~~gdL~~Avrel~~ 129 (169)
|++..+.++..++..|+.+.|+...++
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~ 32 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSE 32 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 677888888888888888888888774
No 21
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=28.43 E-value=80 Score=19.26 Aligned_cols=27 Identities=15% Similarity=0.081 Sum_probs=16.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHc
Q psy17381 103 NTYEILERARYFVDRSDLLQAVKYMNL 129 (169)
Q Consensus 103 d~~~vLsRA~~~L~~gdL~~Avrel~~ 129 (169)
++......+..+...|+.+.|+..++.
T Consensus 37 ~~~~~~~~a~~~~~~~~~~~A~~~~~~ 63 (118)
T 1elw_A 37 NHVLYSNRSAAYAKKGDYQKAYEDGCK 63 (118)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 455556666666666666666666654
No 22
>3efd_K KCSA; helix bundle, C-terminus, immune system; 2.60A {Escherichia coli}
Probab=27.96 E-value=42 Score=18.55 Aligned_cols=14 Identities=29% Similarity=0.387 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHH
Q psy17381 40 QALRSRFIGVQDSA 53 (169)
Q Consensus 40 ~~L~~rF~~v~~~~ 53 (169)
-.|.+||+++++..
T Consensus 14 RALHeRFDRLEr~l 27 (30)
T 3efd_K 14 RALHERFDRLERML 27 (30)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 57999999998754
No 23
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=27.83 E-value=1.8e+02 Score=21.34 Aligned_cols=57 Identities=16% Similarity=0.016 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHccCC--hhHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q psy17381 106 EILERARYFVDRSDLLQAVKYMNLLQG--GAKAVSQQWIADTLVY--LETETAAKALLSHA 162 (169)
Q Consensus 106 ~vLsRA~~~L~~gdL~~Avrel~~L~G--~ar~va~dWl~~AR~r--LE~~qa~~~L~a~a 162 (169)
.+-+--+.|+..||++.|++.+.-|+- -...+...|+..+--+ -..+..+-.|..+.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L 71 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSL 71 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 445556889999999999999998853 3567888999988775 23344444444443
No 24
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=26.95 E-value=50 Score=21.43 Aligned_cols=27 Identities=15% Similarity=0.084 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHc
Q psy17381 103 NTYEILERARYFVDRSDLLQAVKYMNL 129 (169)
Q Consensus 103 d~~~vLsRA~~~L~~gdL~~Avrel~~ 129 (169)
++.....++..++..|+.+.|++.++.
T Consensus 37 ~~~~~~~~a~~~~~~~~~~~A~~~~~~ 63 (126)
T 3upv_A 37 DARGYSNRAAALAKLMSFPEAIADCNK 63 (126)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 556666667777777777777766664
No 25
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=26.51 E-value=80 Score=20.38 Aligned_cols=27 Identities=11% Similarity=0.073 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHc
Q psy17381 103 NTYEILERARYFVDRSDLLQAVKYMNL 129 (169)
Q Consensus 103 d~~~vLsRA~~~L~~gdL~~Avrel~~ 129 (169)
++......+..++..|+++.|+..++.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~ 34 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGR 34 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 455556666666666666666665553
No 26
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=26.32 E-value=41 Score=24.70 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=16.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHc
Q psy17381 103 NTYEILERARYFVDRSDLLQAVKYMNL 129 (169)
Q Consensus 103 d~~~vLsRA~~~L~~gdL~~Avrel~~ 129 (169)
|++..+.+|..+...|+++.|+..+++
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~ 28 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNK 28 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 344566777777777777777776664
No 27
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=25.82 E-value=87 Score=23.19 Aligned_cols=28 Identities=25% Similarity=0.428 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHcc
Q psy17381 103 NTYEILERARYFVDRSDLLQAVKYMNLL 130 (169)
Q Consensus 103 d~~~vLsRA~~~L~~gdL~~Avrel~~L 130 (169)
+++..+.++..+++.|+.+.|+..++.+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~ 41 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAV 41 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 7889999999999999999999999964
No 28
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.60 E-value=1.4e+02 Score=19.20 Aligned_cols=51 Identities=8% Similarity=-0.065 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHcc-CC--hhHHHHHHHHHHHHHHHHHH
Q psy17381 102 LNTYEILERARYFVDRSDLLQAVKYMNLL-QG--GAKAVSQQWIADTLVYLETE 152 (169)
Q Consensus 102 ~d~~~vLsRA~~~L~~gdL~~Avrel~~L-~G--~ar~va~dWl~~AR~rLE~~ 152 (169)
.+.......+..+...|+++.|++.++.. +- .......-|..-+..+....
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~ 79 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLE 79 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHc
Confidence 47889999999999999999999999853 32 23234555666666655443
No 29
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=25.50 E-value=53 Score=22.58 Aligned_cols=27 Identities=7% Similarity=0.142 Sum_probs=17.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHc
Q psy17381 103 NTYEILERARYFVDRSDLLQAVKYMNL 129 (169)
Q Consensus 103 d~~~vLsRA~~~L~~gdL~~Avrel~~ 129 (169)
+.+.....+..++..|+++.|+..++.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~ 36 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQ 36 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455666666666666777666666664
No 30
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=24.45 E-value=72 Score=16.98 Aligned_cols=16 Identities=13% Similarity=0.177 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHH
Q psy17381 39 EQALRSRFIGVQDSAY 54 (169)
Q Consensus 39 ~~~L~~rF~~v~~~~r 54 (169)
.++|++|..++.+..|
T Consensus 10 ledlqerlrklrkklr 25 (27)
T 3twe_A 10 LEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4788888888877765
No 31
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=24.43 E-value=1e+02 Score=18.19 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHc
Q psy17381 103 NTYEILERARYFVDRSDLLQAVKYMNL 129 (169)
Q Consensus 103 d~~~vLsRA~~~L~~gdL~~Avrel~~ 129 (169)
+.......+..+...|+.+.|+..++.
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~ 68 (91)
T 1na3_A 42 NAEAWYNLGNAYYKQGDYDEAIEYYQK 68 (91)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 566788899999999999999998875
No 32
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=24.01 E-value=65 Score=22.41 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=19.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhccC
Q psy17381 36 VYSEQALRSRFIGVQDSAYRVALVP 60 (169)
Q Consensus 36 V~t~~~L~~rF~~v~~~~r~~alvp 60 (169)
--|.++|++||-.|.+...+.--.|
T Consensus 66 ~Rt~EdLK~RyY~v~~~l~~~r~~~ 90 (93)
T 3hm5_A 66 KRSVEDLKERYYHICAKLANVRAVP 90 (93)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 4799999999999988877665333
No 33
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=23.83 E-value=67 Score=24.19 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=12.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy17381 103 NTYEILERARYFVDRSDLLQAVKYMN 128 (169)
Q Consensus 103 d~~~vLsRA~~~L~~gdL~~Avrel~ 128 (169)
++......+..+...|+.+.|+..++
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~ 61 (359)
T 3ieg_A 36 NYIAYYRRATVFLAMGKSKAALPDLT 61 (359)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 34444444444555555555554444
No 34
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=23.76 E-value=56 Score=25.35 Aligned_cols=27 Identities=11% Similarity=0.078 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHc
Q psy17381 103 NTYEILERARYFVDRSDLLQAVKYMNL 129 (169)
Q Consensus 103 d~~~vLsRA~~~L~~gdL~~Avrel~~ 129 (169)
+.+..+..|..++..||++.|...+.+
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~ 142 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXD 142 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHH
Confidence 344556666666666777666666664
No 35
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=23.60 E-value=64 Score=22.53 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=19.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhh
Q psy17381 35 GVYSEQALRSRFIGVQDSAYRVA 57 (169)
Q Consensus 35 GV~t~~~L~~rF~~v~~~~r~~a 57 (169)
+--|.++|++||=.|.+...++-
T Consensus 65 ~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 65 KKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHhh
Confidence 46799999999999988876654
No 36
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=23.22 E-value=1.6e+02 Score=24.58 Aligned_cols=54 Identities=7% Similarity=-0.068 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHhc-CCHHHHHHHHHc-cCChhHHHHHHHHHHHHHHHHHHHHHH
Q psy17381 103 NTYEILERARYFVDR-SDLLQAVKYMNL-LQGGAKAVSQQWIADTLVYLETETAAK 156 (169)
Q Consensus 103 d~~~vLsRA~~~L~~-gdL~~Avrel~~-L~G~ar~va~dWl~~AR~rLE~~qa~~ 156 (169)
+.+.-+..++++... ||-+.|.++++. |...|+..-..=+.+.-++-++++.++
T Consensus 238 ~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~q~eA~~LL~ 293 (301)
T 3u64_A 238 DPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVILSQKRARWLKA 293 (301)
T ss_dssp CSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHHHHHHHHHHHH
Confidence 467779999999985 999999999995 555555211111233334444554444
No 37
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=22.58 E-value=1.1e+02 Score=19.66 Aligned_cols=29 Identities=7% Similarity=0.060 Sum_probs=23.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHc
Q psy17381 101 SLNTYEILERARYFVDRSDLLQAVKYMNL 129 (169)
Q Consensus 101 ~~d~~~vLsRA~~~L~~gdL~~Avrel~~ 129 (169)
..++...+.++..+...|+.+.|+..++.
T Consensus 69 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 97 (126)
T 3upv_A 69 PNFVRAYIRKATAQIAVKEYASALETLDA 97 (126)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 34677888888889999999999888874
No 38
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=22.57 E-value=1.4e+02 Score=27.02 Aligned_cols=45 Identities=11% Similarity=0.110 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHccCChhHHHHHHHHHHH
Q psy17381 101 SLNTYEILERARYFVDRSDLLQAVKYMNLLQGGAKAVSQQWIADT 145 (169)
Q Consensus 101 ~~d~~~vLsRA~~~L~~gdL~~Avrel~~L~G~ar~va~dWl~~A 145 (169)
.+..+.+..|++..+..|+...|-+.+..|+...+.++..|+.-.
T Consensus 151 ~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~ 195 (618)
T 1qsa_A 151 KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLA 195 (618)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 468889999999999999999999999999777777887777643
No 39
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=22.43 E-value=1.2e+02 Score=26.07 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHccCCh
Q psy17381 106 EILERARYFVDRSDLLQAVKYMNLLQGG 133 (169)
Q Consensus 106 ~vLsRA~~~L~~gdL~~Avrel~~L~G~ 133 (169)
-++.+|+-.-.+|.|+.|.++++.+++.
T Consensus 338 ~~~eYA~lLA~qG~l~~A~~yL~~lp~~ 365 (399)
T 2pm7_A 338 KFLEFINLTTSTGNFELATEFLNSLPSD 365 (399)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCCCC
Confidence 5778899999999999999999999764
No 40
>2zzd_B Thiocyanate hydrolase subunit beta; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_B 2dxb_B 2dd5_B* 2dxc_B*
Probab=21.74 E-value=66 Score=24.51 Aligned_cols=37 Identities=3% Similarity=0.100 Sum_probs=27.1
Q ss_pred ChHHHHHHHhCChHHhhcCCCCHHHHHHHHHHHHHHH
Q psy17381 17 DTFVETICAAFPSAALSRGVYSEQALRSRFIGVQDSA 53 (169)
Q Consensus 17 D~~v~~~l~slp~~a~~~GV~t~~~L~~rF~~v~~~~ 53 (169)
.+.-..=|.++..-..++||.|.++|..|-..+..+.
T Consensus 106 ~sYYe~WL~ALe~lLvekGvit~~EL~ar~aEv~ar~ 142 (157)
T 2zzd_B 106 MPYYGRWLLTAARILVDKQFVTLTELHNKIVEMRERV 142 (157)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Confidence 3444455556666678999999999999988776553
No 41
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=20.89 E-value=1e+02 Score=21.09 Aligned_cols=50 Identities=12% Similarity=-0.049 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHcc----CChhHHHHHHHHHHHHHHHHH
Q psy17381 102 LNTYEILERARYFVDRSDLLQAVKYMNLL----QGGAKAVSQQWIADTLVYLET 151 (169)
Q Consensus 102 ~d~~~vLsRA~~~L~~gdL~~Avrel~~L----~G~ar~va~dWl~~AR~rLE~ 151 (169)
.++......+..+...|+.+.|++.++.. +..+.......+..++.+++-
T Consensus 77 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~ 130 (164)
T 3sz7_A 77 KYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEE 130 (164)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHH
Confidence 35666777777777777777777777642 233444455555555555543
No 42
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=20.82 E-value=81 Score=19.59 Aligned_cols=25 Identities=8% Similarity=0.109 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH
Q psy17381 104 TYEILERARYFVDRSDLLQAVKYMN 128 (169)
Q Consensus 104 ~~~vLsRA~~~L~~gdL~~Avrel~ 128 (169)
.......+..+...|+.+.|+..++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~ 36 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYG 36 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHH
Confidence 3444555555555555555555554
No 43
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=20.81 E-value=2e+02 Score=19.38 Aligned_cols=48 Identities=17% Similarity=0.105 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHc-cCChhH--HHHHHHHHHHHHHHH
Q psy17381 103 NTYEILERARYFVDRSDLLQAVKYMNL-LQGGAK--AVSQQWIADTLVYLE 150 (169)
Q Consensus 103 d~~~vLsRA~~~L~~gdL~~Avrel~~-L~G~ar--~va~dWl~~AR~rLE 150 (169)
++...+.++..+...|+.+.|+..++. +.=.|. ..+...+..++.++.
T Consensus 96 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~ 146 (162)
T 3rkv_A 96 NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRA 146 (162)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 677899999999999999999999885 222232 345666666665554
No 44
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=20.61 E-value=1.3e+02 Score=19.33 Aligned_cols=27 Identities=15% Similarity=0.009 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHc
Q psy17381 103 NTYEILERARYFVDRSDLLQAVKYMNL 129 (169)
Q Consensus 103 d~~~vLsRA~~~L~~gdL~~Avrel~~ 129 (169)
++.....++..++..|+.+.|+..++.
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~ 68 (137)
T 3q49_B 42 VAVYYTNRALCYLKMQQPEQALADCRR 68 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 455667777777777777777776664
No 45
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=20.40 E-value=2.4e+02 Score=20.37 Aligned_cols=27 Identities=11% Similarity=-0.076 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHc
Q psy17381 103 NTYEILERARYFVDRSDLLQAVKYMNL 129 (169)
Q Consensus 103 d~~~vLsRA~~~L~~gdL~~Avrel~~ 129 (169)
+++.....+..+...|+.+.|+..++.
T Consensus 38 ~~~a~~~lg~~~~~~g~~~~A~~~~~~ 64 (217)
T 2pl2_A 38 DPEALYWLARTQLKLGLVNPALENGKT 64 (217)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 678899999999999999999999885
No 46
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=20.08 E-value=1.9e+02 Score=18.92 Aligned_cols=27 Identities=7% Similarity=-0.182 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHc
Q psy17381 103 NTYEILERARYFVDRSDLLQAVKYMNL 129 (169)
Q Consensus 103 d~~~vLsRA~~~L~~gdL~~Avrel~~ 129 (169)
+.+.....+..+...|+.+.|+..+..
T Consensus 50 ~~~a~~~lg~~~~~~g~~~~A~~~~~~ 76 (121)
T 1hxi_A 50 REEAWRSLGLTQAENEKDGLAIIALNH 76 (121)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 566777777788888888888887774
No 47
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=20.08 E-value=73 Score=19.15 Aligned_cols=18 Identities=22% Similarity=0.547 Sum_probs=13.7
Q ss_pred HHHHHHHHhcC--CHHHHHH
Q psy17381 108 LERARYFVDRS--DLLQAVK 125 (169)
Q Consensus 108 LsRA~~~L~~g--dL~~Avr 125 (169)
.++|+++|+.. ||+.|+.
T Consensus 21 ~~~A~~~Lea~nWDLe~Av~ 40 (45)
T 3e21_A 21 IDEAITLLEQNNWDLVAAIN 40 (45)
T ss_dssp HHHHHHHHHHTTTCHHHHHT
T ss_pred HHHHHHHHHHcCCcHHHHHH
Confidence 45788888874 8888874
Done!