Query psy17381
Match_columns 169
No_of_seqs 100 out of 189
Neff 5.9
Searched_HMMs 13730
Date Fri Aug 16 21:02:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17381.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17381hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2i1qa1 a.60.4.1 (A:5-64) DNA 41.5 11 0.00079 22.3 3.0 26 124-149 31-56 (60)
2 d2pmra1 a.8.11.1 (A:3-77) Unch 35.8 8.7 0.00063 24.4 1.9 27 104-130 35-61 (75)
3 d1sr2a_ a.24.10.4 (A:) Sensor- 32.5 29 0.0021 22.5 4.4 49 103-151 43-91 (116)
4 d2crba1 a.7.16.1 (A:8-90) Nucl 32.3 22 0.0016 22.9 3.5 31 109-147 13-43 (83)
5 d2cfua2 d.157.1.13 (A:20-524) 29.8 39 0.0029 27.7 5.7 42 103-144 429-476 (505)
6 d2oo2a1 a.8.11.1 (A:1-75) Hypo 29.7 17 0.0012 22.9 2.6 29 104-132 33-61 (75)
7 d2d5ba1 a.27.1.1 (A:349-500) M 29.3 35 0.0026 22.9 4.6 32 103-134 35-66 (152)
8 d2cjja1 a.4.1.3 (A:8-70) Radia 24.6 62 0.0045 18.7 4.7 41 16-56 8-56 (63)
9 d1elra_ a.118.8.1 (A:) Hop {Hu 24.0 45 0.0033 21.1 4.2 27 103-129 37-63 (128)
10 d256ba_ a.24.3.1 (A:) Cytochro 22.8 21 0.0015 23.5 2.1 30 103-132 67-96 (106)
11 d1a17a_ a.118.8.1 (A:) Protein 21.6 41 0.003 21.8 3.6 25 105-129 11-35 (159)
12 d1qsaa1 a.118.5.1 (A:1-450) 70 21.5 1E+02 0.0074 23.7 6.6 46 101-146 151-196 (450)
13 d1pzna1 a.60.4.1 (A:35-95) DNA 21.4 27 0.0019 20.4 2.2 26 124-149 33-58 (61)
14 d1hxia_ a.118.8.1 (A:) Peroxin 21.3 28 0.002 21.7 2.5 27 103-129 83-109 (112)
15 d2nsza1 a.118.1.14 (A:322-450) 20.9 70 0.0051 21.1 4.7 38 109-146 12-51 (129)
16 d1elwa_ a.118.8.1 (A:) Hop {Hu 20.8 58 0.0042 20.1 4.1 56 102-158 35-91 (117)
No 1
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Probab=41.50 E-value=11 Score=22.32 Aligned_cols=26 Identities=12% Similarity=0.083 Sum_probs=22.9
Q ss_pred HHHHHccCChhHHHHHHHHHHHHHHH
Q psy17381 124 VKYMNLLQGGAKAVSQQWIADTLVYL 149 (169)
Q Consensus 124 vrel~~L~G~ar~va~dWl~~AR~rL 149 (169)
..+|...+|-+...+..|++.||..+
T Consensus 31 ~eeL~~i~Gi~~~~A~~i~~~ar~~~ 56 (60)
T d2i1qa1 31 VGELTDIEGISEKAAAKMIMGARDLC 56 (60)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHc
Confidence 56788999999999999999999754
No 2
>d2pmra1 a.8.11.1 (A:3-77) Uncharacterized protein MTH1690 {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=35.82 E-value=8.7 Score=24.42 Aligned_cols=27 Identities=7% Similarity=0.342 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcc
Q psy17381 104 TYEILERARYFVDRSDLLQAVKYMNLL 130 (169)
Q Consensus 104 ~~~vLsRA~~~L~~gdL~~Avrel~~L 130 (169)
..+=++-|++|++.||+..|.-.+|=-
T Consensus 35 a~~Y~~Da~~f~~~gd~v~A~~~i~YA 61 (75)
T d2pmra1 35 ALNYRDDSVYYLEKGDHITSFGCITYA 61 (75)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 335577889999999999999888743
No 3
>d1sr2a_ a.24.10.4 (A:) Sensor-like histidine kinase YojN, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=32.49 E-value=29 Score=22.46 Aligned_cols=49 Identities=14% Similarity=-0.026 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHccCChhHHHHHHHHHHHHHHHHH
Q psy17381 103 NTYEILERARYFVDRSDLLQAVKYMNLLQGGAKAVSQQWIADTLVYLET 151 (169)
Q Consensus 103 d~~~vLsRA~~~L~~gdL~~Avrel~~L~G~ar~va~dWl~~AR~rLE~ 151 (169)
++..-+..-+.++.++|.+...+..-.|||.+.-+-...+.+.=..+|.
T Consensus 43 ~~p~~l~~L~~a~~~~D~~~l~~~aH~LKGs~~~~Ga~~l~~~~~~lE~ 91 (116)
T d1sr2a_ 43 TVPDDVKRLYTEAATSDFAALAQTAHRLKGVFAMLNLVPGKQLCETLEH 91 (116)
T ss_dssp THHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 3446689999999999999999999999999887777777666666654
No 4
>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=32.27 E-value=22 Score=22.87 Aligned_cols=31 Identities=10% Similarity=0.250 Sum_probs=22.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHccCChhHHHHHHHHHHHHH
Q psy17381 109 ERARYFVDRSDLLQAVKYMNLLQGGAKAVSQQWIADTLV 147 (169)
Q Consensus 109 sRA~~~L~~gdL~~Avrel~~L~G~ar~va~dWl~~AR~ 147 (169)
-||+.++..|..|.|+..- +-+.+.|.+|-.
T Consensus 13 RrAer~l~~~rydeAIech--------~kA~~yl~eA~k 43 (83)
T d2crba1 13 RRADRLLAAGKYEEAISCH--------RKATTYLSEAMK 43 (83)
T ss_dssp HHHHHHHHTTCHHHHHHHH--------HHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHH--------HHHHHHHHHHHh
Confidence 4799999999999999864 335555555544
No 5
>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=29.77 E-value=39 Score=27.72 Aligned_cols=42 Identities=21% Similarity=0.268 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHcc---CC---hhHHHHHHHHHH
Q psy17381 103 NTYEILERARYFVDRSDLLQAVKYMNLL---QG---GAKAVSQQWIAD 144 (169)
Q Consensus 103 d~~~vLsRA~~~L~~gdL~~Avrel~~L---~G---~ar~va~dWl~~ 144 (169)
+.+.|+.+|+.++++||+--|+..++.+ .. .+|.+..|.+++
T Consensus 429 G~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~ 476 (505)
T d2cfua2 429 GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQ 476 (505)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 7999999999999999999999999976 22 456666655543
No 6
>d2oo2a1 a.8.11.1 (A:1-75) Hypothetical protein AF1782 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=29.74 E-value=17 Score=22.93 Aligned_cols=29 Identities=21% Similarity=0.431 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHccCC
Q psy17381 104 TYEILERARYFVDRSDLLQAVKYMNLLQG 132 (169)
Q Consensus 104 ~~~vLsRA~~~L~~gdL~~Avrel~~L~G 132 (169)
..+=++-++++++.||+..|.-.+|=-.|
T Consensus 33 a~~Y~~Da~~fl~~gD~v~A~~~~~Ya~g 61 (75)
T d2oo2a1 33 IEAYISDSRYFLEKGDLVRAFECVVWAWA 61 (75)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44567889999999999999988874333
No 7
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}
Probab=29.26 E-value=35 Score=22.91 Aligned_cols=32 Identities=13% Similarity=0.011 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHccCChh
Q psy17381 103 NTYEILERARYFVDRSDLLQAVKYMNLLQGGA 134 (169)
Q Consensus 103 d~~~vLsRA~~~L~~gdL~~Avrel~~L~G~a 134 (169)
+..++......+++..++..|++++-.+-...
T Consensus 35 ~~~~~~~~~~~~~e~~~~~~al~~i~~~~~~~ 66 (152)
T d2d5ba1 35 EGTGLAGRLRPLVRELKFHVALEEAMAYVKAL 66 (152)
T ss_dssp GGGGHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 56788999999999999999999998875543
No 8
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}
Probab=24.56 E-value=62 Score=18.65 Aligned_cols=41 Identities=7% Similarity=0.077 Sum_probs=27.6
Q ss_pred CChHHHHHHHhCChH--------HhhcCCCCHHHHHHHHHHHHHHHHHh
Q psy17381 16 SDTFVETICAAFPSA--------ALSRGVYSEQALRSRFIGVQDSAYRV 56 (169)
Q Consensus 16 ~D~~v~~~l~slp~~--------a~~~GV~t~~~L~~rF~~v~~~~r~~ 56 (169)
+|.++..++...|+. +..-+==|..|.++||..+.+.+++.
T Consensus 8 Ed~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~dik~i 56 (63)
T d2cjja1 8 ENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYI 56 (63)
T ss_dssp HHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcc
Confidence 456666666666641 22333468999999999998887753
No 9
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.01 E-value=45 Score=21.07 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHc
Q psy17381 103 NTYEILERARYFVDRSDLLQAVKYMNL 129 (169)
Q Consensus 103 d~~~vLsRA~~~L~~gdL~~Avrel~~ 129 (169)
+......++..+...|+++.|++..+.
T Consensus 37 ~~~~~~~~a~~~~~~~~~~~A~~~~~~ 63 (128)
T d1elra_ 37 NMTYITNQAAVYFEKGDYNKCRELCEK 63 (128)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cHHHHHhHHHHHHHcCchHHHHHHHHH
Confidence 677889999999999999999999875
No 10
>d256ba_ a.24.3.1 (A:) Cytochrome b562 {Escherichia coli [TaxId: 562]}
Probab=22.75 E-value=21 Score=23.48 Aligned_cols=30 Identities=10% Similarity=0.044 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHccCC
Q psy17381 103 NTYEILERARYFVDRSDLLQAVKYMNLLQG 132 (169)
Q Consensus 103 d~~~vLsRA~~~L~~gdL~~Avrel~~L~G 132 (169)
+....|.+++..++.|+++.|=..+++|.+
T Consensus 67 ~L~~~ld~i~~la~~G~l~eAk~~l~~l~~ 96 (106)
T d256ba_ 67 ILVGQIDDALKLANEGKVKEAQAAAEQLKT 96 (106)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 677889999999999999999887776643
No 11
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.62 E-value=41 Score=21.82 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHc
Q psy17381 105 YEILERARYFVDRSDLLQAVKYMNL 129 (169)
Q Consensus 105 ~~vLsRA~~~L~~gdL~~Avrel~~ 129 (169)
+++..++..+++.||.+.|+...+.
T Consensus 11 ~~l~~~gn~~~~~~~y~~A~~~~~~ 35 (159)
T d1a17a_ 11 EELKTQANDYFKAKDYENAIKFYSQ 35 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHhhh
Confidence 3455555566666666666666553
No 12
>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}
Probab=21.51 E-value=1e+02 Score=23.71 Aligned_cols=46 Identities=11% Similarity=0.086 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHccCChhHHHHHHHHHHHH
Q psy17381 101 SLNTYEILERARYFVDRSDLLQAVKYMNLLQGGAKAVSQQWIADTL 146 (169)
Q Consensus 101 ~~d~~~vLsRA~~~L~~gdL~~Avrel~~L~G~ar~va~dWl~~AR 146 (169)
.++++.+..|+...+..|+...|-+.+..++..-+.++.-|+.-.+
T Consensus 151 ~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~ 196 (450)
T d1qsaa1 151 KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN 196 (450)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHh
Confidence 3688999999999999999999999999998887777777765444
No 13
>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=21.38 E-value=27 Score=20.40 Aligned_cols=26 Identities=8% Similarity=-0.040 Sum_probs=22.5
Q ss_pred HHHHHccCChhHHHHHHHHHHHHHHH
Q psy17381 124 VKYMNLLQGGAKAVSQQWIADTLVYL 149 (169)
Q Consensus 124 vrel~~L~G~ar~va~dWl~~AR~rL 149 (169)
..+|.+.+|-....+..|+..||..+
T Consensus 33 ~~eL~~i~Gi~~~~A~~i~~~ar~~~ 58 (61)
T d1pzna1 33 PIELKEVAGISEGTALKIIQAARKAA 58 (61)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHc
Confidence 56788899999999999999999754
No 14
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}
Probab=21.34 E-value=28 Score=21.71 Aligned_cols=27 Identities=7% Similarity=-0.068 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHc
Q psy17381 103 NTYEILERARYFVDRSDLLQAVKYMNL 129 (169)
Q Consensus 103 d~~~vLsRA~~~L~~gdL~~Avrel~~ 129 (169)
+.+..+..+..+...||.++|++.+++
T Consensus 83 ~~~a~~~la~~y~~~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 83 DIAVHAALAVSHTNEHNANAALASLRA 109 (112)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHCCCHHHHHHHHHH
Confidence 567778888888888888888777764
No 15
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.88 E-value=70 Score=21.13 Aligned_cols=38 Identities=13% Similarity=0.051 Sum_probs=30.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHccCC--hhHHHHHHHHHHHH
Q psy17381 109 ERARYFVDRSDLLQAVKYMNLLQG--GAKAVSQQWIADTL 146 (169)
Q Consensus 109 sRA~~~L~~gdL~~Avrel~~L~G--~ar~va~dWl~~AR 146 (169)
+=.+.|+..||++.|++.+.-|.- --..+..-++..|=
T Consensus 12 ~ll~EY~~~~D~~Ea~~~l~eL~~p~~~~e~V~~~i~~al 51 (129)
T d2nsza1 12 MLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVL 51 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 345788999999999999998754 34578888888873
No 16
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.78 E-value=58 Score=20.13 Aligned_cols=56 Identities=9% Similarity=-0.031 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHc-cCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17381 102 LNTYEILERARYFVDRSDLLQAVKYMNL-LQGGAKAVSQQWIADTLVYLETETAAKAL 158 (169)
Q Consensus 102 ~d~~~vLsRA~~~L~~gdL~~Avrel~~-L~G~ar~va~dWl~~AR~rLE~~qa~~~L 158 (169)
.++.....++.-++..|+.+.|++..+. ++=-|. -..-|..-++......+--+.+
T Consensus 35 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~~~A~ 91 (117)
T d1elwa_ 35 HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNRFEEAK 91 (117)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred cchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccCHHHHH
Confidence 3566666666666666666666666663 211222 1123555555555444333333
Done!