RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy17381
         (169 letters)



>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
           Mitofilin controls mitochondrial cristae morphology.
           Mitofilin is enriched in the narrow space between the
           inner boundary and the outer membranes, where it forms a
           homotypic interaction and assembles into a large
           multimeric protein complex. The first 78 amino acids
           contain a typical amino-terminal-cleavable mitochondrial
           presequence rich in positive-charged and hydroxylated
           residues and a membrane anchor domain. In addition, it
           has three centrally located coiled coil domains.
          Length = 493

 Score =  123 bits (311), Expect = 8e-34
 Identities = 46/157 (29%), Positives = 78/157 (49%), Gaps = 11/157 (7%)

Query: 7   LVRAREISKSDTFVETICAAFPSAALSRGVYSEQALRSRFIGVQDSAYRVALVPDESASL 66
           L   +E++K D  V+   A+ P  A  RG+ SE+ LR+RF  +     + +L+P E+A L
Sbjct: 348 LDALKELAKDDELVDAALASLPPEASQRGILSEEQLRNRFNLLAPELRKASLLP-ENAGL 406

Query: 67  PLVFLSYLQSLFIIRGLAAISPEEIRDEPSAKLNSLNTYEILERARYFVDRSDLLQAVKY 126
               LSYL SL + +            +  A  +  +   +L RA Y ++R DL +A + 
Sbjct: 407 LGHLLSYLFSLLLFK----------PKQGEADPDGDDVESVLARAEYNLERGDLDKAARE 456

Query: 127 MNLLQGGAKAVSQQWIADTLVYLETETAAKALLSHAA 163
           +N L+G ++ ++  W+ +    LE E A   L + A 
Sbjct: 457 VNSLKGWSRKLASDWLKEARRRLEVEQALDLLDAEAK 493


>gnl|CDD|238324 cd00580, CHMI, 5-carboxymethyl-2-hydroxymuconate isomerase (CHMI)
          is a trimeric enzyme catalyzing the isomerization of
          the unsaturated ketone
          5-(carboxymethyl)-2-hydroxymuconate to
          5-(carboxymethyl)-2-oxo-3-hexene-1,6-dionate. This is
          one step in the homoprotocatechuate pathway, one of the
          microbial meta-fission pathways that degrade aromatic
          carbon sources to citric acid cycle intermediates.
          Despite the structural similarity of CHMI with
          4-oxalocrotonate tautomerase (4-OT) and macrophage
          migration inhibitory factor (MIF), there is no
          significant sequence similarity among these protein
          families, and therefore, they are not combined in one
          hierarchy.
          Length = 113

 Score = 26.4 bits (59), Expect = 4.1
 Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 2/38 (5%)

Query: 20 VETICAAFPSAALSRGVYSEQALRSRFIGVQDSAYRVA 57
          +  +  A   A ++ G++    ++ R I      YRV 
Sbjct: 17 IPELLRALHDALVASGLFPLGGIKVRAIRADH--YRVG 52


>gnl|CDD|226676 COG4223, COG4223, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 422

 Score = 27.2 bits (60), Expect = 4.3
 Identities = 30/128 (23%), Positives = 49/128 (38%), Gaps = 13/128 (10%)

Query: 35  GVYSEQALRSRFIGVQDSAYRVALVPDESASLPLVFLSYLQSLFIIRGLAAISPEEIRDE 94
           GV +   L ++F  V ++    +  PD +A L     S   SL  +R + ++        
Sbjct: 305 GVPTRAELATQFGAVANAMVSASNNPDPNAGLFDRLRSSASSLVSVRPVGSVEGSTPD-- 362

Query: 95  PSAKLNSLNTYEILERARYFVDRSDLLQAVKYMNLLQGGAKAVSQQWIADTLVYLETETA 154
                       ++ R    +D  DL  AV   + L   AKA S  +       +E ET 
Sbjct: 363 -----------AMIARMEAALDNGDLEGAVLEWDSLPEAAKAASADFAVKLKARIEVETL 411

Query: 155 AKALLSHA 162
             AL++ A
Sbjct: 412 VDALVADA 419


>gnl|CDD|225335 COG2710, NifD, Nitrogenase molybdenum-iron protein, alpha and beta
           chains [Energy production and conversion].
          Length = 456

 Score = 27.4 bits (61), Expect = 5.0
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 89  EEIRDEPSAKLN-SLNTYEILERARYFVDR 117
           EEIR  P+AKLN  L +      ARY  +R
Sbjct: 225 EEIRRAPNAKLNLVLCSRSGRYLARYLEER 254


>gnl|CDD|234454 TIGR04066, nat_prod_clost, peptide maturation system protein,
           TIGR04066 family.  Members of this protein family occur
           in various Clostridial genomes, always in the context of
           a short peptide and a radical SAM protein predicted to
           modify the short peptide. PSI-BLAST analysis suggests a
           sequence relationship to archaeal proteins designated as
           subunits of an H+-transporting two-sector ATPase. The
           modified peptide is likely to be a bacteriocin, and this
           protein is a candidate to act in either maturation or
           immunity.
          Length = 361

 Score = 26.5 bits (59), Expect = 8.8
 Identities = 6/41 (14%), Positives = 16/41 (39%)

Query: 89  EEIRDEPSAKLNSLNTYEILERARYFVDRSDLLQAVKYMNL 129
           E I+     K  +   Y  +   +     ++ ++ + Y+ L
Sbjct: 280 ENIKQFVKYKFGTDVDYYNISNKKIDWYETEEIKKLSYITL 320


>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
           Provisional.
          Length = 252

 Score = 26.1 bits (57), Expect = 9.4
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 49  VQDSAYRVAL---VPDESASLPLVFLSYLQSLFIIRGLAAISPEEI-RDEPSAKLNSLNT 104
           V+ S  RVAL   V D   S  +      Q    I    A+ PE I  DEP++ L+ ++T
Sbjct: 125 VESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPIST 184

Query: 105 YEILE 109
            +I E
Sbjct: 185 LKIEE 189


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.320    0.132    0.364 

Gapped
Lambda     K      H
   0.267   0.0902    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,566,510
Number of extensions: 788553
Number of successful extensions: 693
Number of sequences better than 10.0: 1
Number of HSP's gapped: 690
Number of HSP's successfully gapped: 20
Length of query: 169
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 79
Effective length of database: 6,945,742
Effective search space: 548713618
Effective search space used: 548713618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (24.7 bits)