RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17381
(169 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.7 bits (118), Expect = 1e-07
Identities = 33/185 (17%), Positives = 56/185 (30%), Gaps = 51/185 (27%)
Query: 17 DTFVETICAAFPSAALSRGVYSEQALRSRFIGVQDSAYRVALVPDESAS-----LPLVFL 71
+ F + + A + L +F+G Y +LV L L L
Sbjct: 35 EQFNKILPEPTEGFAADDEPTTPAELVGKFLG-----YVSSLVEPSKVGQFDQVLNLC-L 88
Query: 72 SYLQSLFI----IRGLAAISPEEIRDEPSAKLNSLNTYEILERARYFVDR-------SDL 120
+ ++ ++ I LAA +E + Y AR R S L
Sbjct: 89 TEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY---ITARIMAKRPFDKKSNSAL 145
Query: 121 LQAVKYMNLLQGGAKAVSQ---QWIADTLVYLE----------------TETAAKALLSH 161
+AV +G A+ V+ Q +T Y E + +A+ L
Sbjct: 146 FRAVG-----EGNAQLVAIFGGQ--GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSEL 198
Query: 162 AASVS 166
+
Sbjct: 199 IRTTL 203
Score = 41.6 bits (97), Expect = 6e-05
Identities = 31/158 (19%), Positives = 55/158 (34%), Gaps = 54/158 (34%)
Query: 30 AALSRGVYSEQALRSRFIGVQDSA--------YRVALV------PDESASLPLVFL--SY 73
+ + + + L+S+ + D+ Y AL ES + +VF
Sbjct: 1737 TLMEKAAF--EDLKSKGLIPADATFAGHSLGEY-AALASLADVMSIESL-VEVVFYRGMT 1792
Query: 74 LQSLF-------IIRGLAAISPEEIRDEPSAKLNSLNTYEILERARYFVDR-----SDLL 121
+Q G+ AI+P + +A + E +Y V+R L+
Sbjct: 1793 MQVAVPRDELGRSNYGMIAINPGRV----AASFS-------QEALQYVVERVGKRTGWLV 1841
Query: 122 QAVKYMNLLQGGAKAVSQQW-IADTLVYLETETAAKAL 158
+ V Y N ++ QQ+ A L L +T L
Sbjct: 1842 EIVNY-N-VEN------QQYVAAGDLRAL--DTVTNVL 1869
Score = 37.0 bits (85), Expect = 0.002
Identities = 36/206 (17%), Positives = 61/206 (29%), Gaps = 71/206 (34%)
Query: 6 GLVRAREISKSDTFVETICAAFPSAALSRGVYSEQALRSRF-IGV--QDSAYRVALVPDE 62
GLV A I+++D++ +F + +A+ F IGV ++ +L P
Sbjct: 276 GLVTAVAIAETDSW-----ESFFVSVR-------KAITVLFFIGVRCYEAYPNTSLPPSI 323
Query: 63 SAS------------LPLVFLSYLQSLFIIRGLAAISPEEIRDE--------------PS 96
L + L+ Q + + P + E P
Sbjct: 324 LEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPP 383
Query: 97 AKLNSLNTY-------------EIL--ERARYFVDR---------SDLLQAVKYMNLLQG 132
L LN I ER F +R S LL +L+
Sbjct: 384 QSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPAS--DLINK 441
Query: 133 GAKAVSQQWIADTL---VYLETETAA 155
+ + A + VY +T +
Sbjct: 442 DLVKNNVSFNAKDIQIPVY-DTFDGS 466
Score = 35.0 bits (80), Expect = 0.008
Identities = 17/98 (17%), Positives = 36/98 (36%), Gaps = 13/98 (13%)
Query: 11 REISKS-DTFVETICAAFPSAA----LSRGVYSEQALRSRFIGVQDSAYRVALVPDE--- 62
R++ ++ V + SA L R + + ++ + + + + PD+
Sbjct: 174 RDLYQTYHVLVGDLIKF--SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231
Query: 63 -SA--SLPLVFLSYLQSLFIIRGLAAISPEEIRDEPSA 97
S S PL+ + L + L +P E+R
Sbjct: 232 LSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG 269
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 4e-04
Identities = 19/118 (16%), Positives = 40/118 (33%), Gaps = 19/118 (16%)
Query: 4 WLGLVRA---REISKSDTFVETICAAFPSAALSRGVYSEQALRSRFIGVQDSAYRVALVP 60
+L RE+ ++ +I A L+ + + + +S+ V L P
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV-LEP 368
Query: 61 DESASLPLVFLSYLQSLFIIRGLAAISP--------EEIRDEPSAKLNSLNTYEILER 110
E + L + A I + I+ + +N L+ Y ++E+
Sbjct: 369 AE-------YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419
>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase,
structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex
aeolicus}
Length = 342
Score = 27.9 bits (63), Expect = 1.8
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 12 EISKSDTFVETICAAFPSAALSRGVYSEQALR 43
++K+ + VE + F AA + L+
Sbjct: 247 VVNKAPSSVEEVNEKFREAAQKYRESGKVYLK 278
>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide,
receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}
Length = 375
Score = 27.4 bits (61), Expect = 2.4
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 52 SAYRVALVPD-----ESASLPLVFLSYLQSLFIIRGL 83
S V+ P ++ASLP V L+ ++ + GL
Sbjct: 141 SGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGL 177
>3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid,
decode, UW, SBRI, LYME disease, non-hodgkin lymphomas,
cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31}
Length = 356
Score = 27.5 bits (62), Expect = 2.5
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 12 EISKSDTFVETICAAFPSAALS---RGV--YSEQALRSR-FIG 48
++ K D E I + A+ + +G+ Y+E + S G
Sbjct: 269 QLKKKDVTKEEINSVLRKASETPELKGILGYTEDPIVSSDIKG 311
>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1;
oxidoreductase, glycolysis, rossmann fold; HET: NAD;
1.70A {Staphylococcus aureus} PDB: 3l6o_Q 3k73_Q 3lc2_O*
3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q*
3ksz_O*
Length = 338
Score = 27.5 bits (62), Expect = 2.5
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 12 EISKSDTFVETICAAFPSAALSRGVYSEQALRSR-FIG 48
+ K D VE + A +A+ Y+E + S +G
Sbjct: 250 VLEKQDVTVEQVNEAMKNASNESFGYTEDEIVSSDVVG 287
>2vqe_Q 30S ribosomal protein S17; tRNA-binding, rRNA-binding,
metal-binding, zinc-finger, translation; HET: TM2 PAR;
2.5A {Thermus thermophilus} SCOP: b.40.4.5 PDB: 1gix_T*
1hnw_Q* 1hnx_Q* 1hnz_Q* 1hr0_Q 1ibk_Q* 1ibl_Q* 1ibm_Q
1jgo_T* 1jgp_T* 1jgq_T* 1ml5_T* 1xmo_Q* 1xmq_Q* 1xnq_Q*
1xnr_Q* 1yl4_T 2b64_Q* 2b9m_Q* 2b9o_Q* ...
Length = 105
Score = 26.1 bits (58), Expect = 2.9
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 106 EILERARYFVDRSDLLQAVKYMNLLQGGAKA 136
++E R + L++ Y +L + G KA
Sbjct: 75 RLVESGRMDLVEKYLIRRQNYQSLSKRGGKA 105
>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II,
alcohol dehydrogenase superf structural genomics; 1.96A
{Novosphingobium aromaticivorans}
Length = 343
Score = 26.0 bits (58), Expect = 6.1
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 53 AYRVALVPD-----ESASLPLVFLSYLQSLFIIRGLAA 85
A +A P +++ LPLVF++ + L +
Sbjct: 113 ARLLASKPAALTMRQASVLPLVFITAWEGLVDRAQVQD 150
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing,
translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB:
2j3m_A*
Length = 572
Score = 25.6 bits (57), Expect = 9.5
Identities = 8/45 (17%), Positives = 17/45 (37%)
Query: 74 LQSLFIIRGLAAISPEEIRDEPSAKLNSLNTYEILERARYFVDRS 118
L++ L + E+ R A S+ + E + + D +
Sbjct: 305 LKNFLGADFLDEATEEDARRVLGAGFGSIGPVNVSEDVKIYADLA 349
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.132 0.364
Gapped
Lambda K H
0.267 0.0830 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,466,816
Number of extensions: 138606
Number of successful extensions: 296
Number of sequences better than 10.0: 1
Number of HSP's gapped: 294
Number of HSP's successfully gapped: 24
Length of query: 169
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 82
Effective length of database: 4,272,666
Effective search space: 350358612
Effective search space used: 350358612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.4 bits)