BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17384
(295 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QQ8|A Chain A, Crystal Structure Of The Putative Rabgap Domain Of Human
Tbc1 Domain Family Member 14
Length = 334
Score = 184 bits (467), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 84/171 (49%), Positives = 118/171 (69%), Gaps = 1/171 (0%)
Query: 4 DNTITQIRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFIL 63
+ ++ I+LDISRTFP+LC+FQ GPY++ LH +L +Y Y + YVQGMS+I A+ IL
Sbjct: 107 EASLELIKLDISRTFPNLCIFQQGGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLIL 166
Query: 64 NISTAYEAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLT 123
N+ TA +AF+ F N LNK F+ ++ +M Y+A + F+ NLPKL HF LT
Sbjct: 167 NLDTA-DAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLT 225
Query: 124 PDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAALDFKKAYDSI 174
PD+YL+DWI+TL+SK++ LDL C+IWD+ RDGE F+FR AL K ++ I
Sbjct: 226 PDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGILKLFEDI 276
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 25/36 (69%)
Query: 253 SKFLTKLPDNMDADKLFKSIAQMSVSIYRKSYETIL 288
++FLT+LP+++ A++LF SIA + + K + +L
Sbjct: 286 AQFLTRLPEDLPAEELFASIATIQMQSRNKKWAQVL 321
>pdb|3QYB|A Chain A, X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rabgap
Domain
Length = 301
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 83/178 (46%), Gaps = 4/178 (2%)
Query: 10 IRLDISRTFPHLCLFQNE-GPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTA 68
I +D+ RTFP F + GP +L +L +Y + + Y QG+S++ + +L++S
Sbjct: 97 ILVDLGRTFPTHPYFSVQLGPGQLSLFNLLKAYSLLDKEVGYCQGISFVAGVLLLHMSEE 156
Query: 69 YEAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYL 128
+AF + F Y ++ +Q + L L+ H ++P LY
Sbjct: 157 -QAFEMLKFLMYDLGFRKQYRPDMMSLQIQMYQLSRLLHDYHRDLYNHLEENEISPSLYA 215
Query: 129 LDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAALDFKKAYDSI--DRETLFNILE 184
W TLF+ L V +++D++ G IF+ AL + +++ + E+ NI+E
Sbjct: 216 APWFLTLFASQFSLGFVARVFDIIFLQGTEVIFKVALSLLSSQETLIMECESFENIVE 273
>pdb|3HZJ|A Chain A, Crystal Structure Of The Rabgap Domain Of The Rabgap1l
Protein
pdb|3HZJ|B Chain B, Crystal Structure Of The Rabgap Domain Of The Rabgap1l
Protein
pdb|3HZJ|C Chain C, Crystal Structure Of The Rabgap Domain Of The Rabgap1l
Protein
Length = 310
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 66/157 (42%), Gaps = 2/157 (1%)
Query: 10 IRLDISRTFPHLCLFQNEG-PYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTA 68
I DI RTFP F++ G +L+ + +Y Y+ I Y QG S++ A+ +L+
Sbjct: 73 ITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHXPEE 132
Query: 69 YEAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYL 128
+AF Y N + + L + LP LH HF L Y
Sbjct: 133 -QAFCVLVKIXYDYGLRDLYRNNFEDLHCKFYQLERLXQEQLPDLHSHFSDLNLEAHXYA 191
Query: 129 LDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAAL 165
W TLF+ L V I DL++ +G IF AL
Sbjct: 192 SQWFLTLFTAKFPLCXVFHIIDLLLCEGLNIIFHVAL 228
>pdb|3QYE|A Chain A, Crystal Structure Of Human Tbc1d1 Rabgap Domain
pdb|3QYE|B Chain B, Crystal Structure Of Human Tbc1d1 Rabgap Domain
Length = 331
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 74/166 (44%), Gaps = 2/166 (1%)
Query: 10 IRLDISRTFPHLCLFQNE-GPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTA 68
I +D+ RTFP F + G +L+ +L +Y + + Y QG+S++ + +L++S
Sbjct: 107 ILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMSEE 166
Query: 69 YEAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYL 128
EAF + Y ++ ++Q + L L+ H + P LY
Sbjct: 167 -EAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYA 225
Query: 129 LDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAALDFKKAYDSI 174
W T+F+ L V +++D++ G IF+ AL ++ +
Sbjct: 226 APWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPL 271
>pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p
Length = 396
Score = 34.3 bits (77), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 6 TITQIRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNI 65
T QI +DI RT PH+ L+Q + N+L +L + + YVQG++ + F
Sbjct: 86 TWHQIEIDIPRTNPHIPLYQFKS-VQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETF 144
Query: 66 STAY 69
T Y
Sbjct: 145 LTEY 148
>pdb|2G77|A Chain A, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 410
Score = 34.3 bits (77), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 6 TITQIRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNI 65
T QI +DI RT PH+ L+Q + N+L +L + + YVQG++ + F
Sbjct: 106 TWHQIEIDIPRTNPHIPLYQFKS-VQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETF 164
Query: 66 STAY 69
T Y
Sbjct: 165 LTEY 168
>pdb|3L4T|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Bj2661
pdb|3L4U|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With De-O-Sulfonated Kotalanol
pdb|3L4V|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Kotalanol
pdb|3L4W|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Miglitol
pdb|3L4X|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Nr4-8
pdb|3L4Y|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Nr4-8ii
pdb|3L4Z|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Salacinol
Length = 875
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 170 AYDSIDRETLFNILEE-YGADAKTVAIIKESLQATKSKIKFMGDISNPFEIKTGVRQGDG 228
YDS+D + + E + K V I+ ++ S K G ++K V DG
Sbjct: 338 TYDSVDFKGFPEFVNELHNNGQKLVIIVDPAISNNSSSSKPYGPYDRGSDMKIWVNSSDG 397
Query: 229 LSPLL 233
++PL+
Sbjct: 398 VTPLI 402
>pdb|2QLY|A Chain A, Crystral Structure Of The N-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|2QMJ|A Chain A, Crystral Structure Of The N-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
pdb|3CTT|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Casuarine
Length = 870
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 170 AYDSIDRETLFNILEE-YGADAKTVAIIKESLQATKSKIKFMGDISNPFEIKTGVRQGDG 228
YDS+D + + E + K V I+ ++ S K G ++K V DG
Sbjct: 338 TYDSVDFKGFPEFVNELHNNGQKLVIIVDPAISNNSSSSKPYGPYDRGSDMKIWVNSSDG 397
Query: 229 LSPLL 233
++PL+
Sbjct: 398 VTPLI 402
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.140 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,784,800
Number of Sequences: 62578
Number of extensions: 349813
Number of successful extensions: 2287
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2278
Number of HSP's gapped (non-prelim): 10
length of query: 295
length of database: 14,973,337
effective HSP length: 98
effective length of query: 197
effective length of database: 8,840,693
effective search space: 1741616521
effective search space used: 1741616521
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)