Query psy17384
Match_columns 295
No_of_seqs 310 out of 2281
Neff 9.3
Searched_HMMs 46136
Date Fri Aug 16 21:05:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17384.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17384hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2223|consensus 100.0 1.4E-39 3.1E-44 282.1 16.0 219 4-292 353-571 (586)
2 KOG2058|consensus 100.0 6.7E-38 1.4E-42 279.6 15.0 168 5-173 195-364 (436)
3 smart00164 TBC Domain in Tre-2 100.0 1.5E-34 3.3E-39 240.4 14.6 151 6-157 46-198 (199)
4 COG5210 GTPase-activating prot 100.0 3.3E-31 7.1E-36 248.0 15.8 169 5-173 255-424 (496)
5 PF00566 RabGAP-TBC: Rab-GTPas 100.0 3.5E-31 7.6E-36 222.5 13.7 167 4-173 44-211 (214)
6 KOG2222|consensus 100.0 5.7E-28 1.2E-32 212.5 14.8 183 6-189 211-403 (848)
7 KOG4567|consensus 100.0 7E-28 1.5E-32 202.1 13.8 184 4-189 118-347 (370)
8 KOG1092|consensus 99.9 6.2E-26 1.3E-30 197.3 10.1 197 5-204 242-470 (484)
9 KOG4436|consensus 99.9 2.7E-24 5.8E-29 199.3 14.0 181 4-185 619-805 (948)
10 KOG4347|consensus 99.9 7.4E-25 1.6E-29 199.8 9.2 166 4-173 241-406 (671)
11 KOG1093|consensus 99.9 3.3E-23 7.3E-28 186.3 13.1 167 5-173 389-557 (725)
12 KOG1102|consensus 99.9 1.3E-22 2.9E-27 183.6 6.1 176 7-185 186-366 (397)
13 KOG2224|consensus 99.8 1.5E-20 3.3E-25 164.2 7.8 167 7-173 496-693 (781)
14 KOG1091|consensus 99.8 2.3E-19 5E-24 161.5 12.6 195 4-199 102-358 (625)
15 KOG2221|consensus 99.8 2.8E-19 6.1E-24 143.3 6.0 126 5-132 141-267 (267)
16 KOG2197|consensus 99.8 3E-19 6.5E-24 164.8 4.8 164 5-170 236-402 (488)
17 KOG2595|consensus 99.7 8.8E-18 1.9E-22 143.1 10.7 192 5-199 95-296 (395)
18 KOG4436|consensus 99.5 1.1E-13 2.4E-18 129.4 9.9 162 6-168 227-397 (948)
19 KOG3636|consensus 99.2 2.7E-10 5.8E-15 100.9 10.6 176 7-189 67-254 (669)
20 cd01651 RT_G2_intron RT_G2_int 99.1 2.2E-10 4.8E-15 96.7 8.8 81 162-248 72-152 (226)
21 cd03487 RT_Bac_retron_II RT_Ba 99.0 8.6E-10 1.9E-14 92.6 6.4 70 161-247 58-128 (214)
22 KOG2801|consensus 98.9 1.1E-08 2.3E-13 86.6 9.4 145 29-174 109-254 (559)
23 PF00078 RVT_1: Reverse transc 98.7 6.6E-10 1.4E-14 92.8 -2.7 88 160-248 64-151 (214)
24 cd01646 RT_Bac_retron_I RT_Bac 98.7 7.8E-09 1.7E-13 82.6 2.3 79 165-248 1-79 (158)
25 cd01709 RT_like_1 RT_like_1: A 98.6 1.2E-07 2.7E-12 83.1 7.6 94 162-257 24-117 (346)
26 cd01648 TERT TERT: Telomerase 98.6 5.3E-08 1.2E-12 73.9 4.0 33 216-248 13-45 (119)
27 cd01650 RT_nLTR_like RT_nLTR: 98.5 4.4E-08 9.6E-13 82.3 2.8 49 161-247 83-131 (220)
28 KOG1005|consensus 97.0 0.00088 1.9E-08 64.8 4.5 123 135-262 493-675 (888)
29 KOG1648|consensus 96.6 4.2E-05 9.2E-10 69.3 -6.6 140 6-156 606-745 (813)
30 KOG4768|consensus 96.3 0.01 2.2E-07 55.8 6.2 80 163-247 363-442 (796)
31 cd00304 RT_like RT_like: Rever 95.1 0.026 5.6E-07 40.6 3.4 25 223-247 12-36 (98)
32 PF14961 BROMI: Broad-minded p 93.8 0.43 9.4E-06 48.8 9.6 141 32-173 1084-1241(1296)
33 COG3344 Retron-type reverse tr 80.2 5.4 0.00012 35.6 6.4 81 162-247 183-263 (328)
34 KOG1102|consensus 76.8 0.38 8.2E-06 44.3 -2.1 159 9-202 2-160 (397)
35 KOG2224|consensus 71.0 1.6 3.4E-05 39.8 0.5 28 56-83 574-601 (781)
36 PF10815 ComZ: ComZ; InterPro 67.0 16 0.00035 23.0 4.1 40 102-141 6-45 (56)
37 PF08109 Antimicrobial14: Lact 50.8 13 0.00027 19.7 1.5 15 49-63 4-18 (31)
38 PF13041 PPR_2: PPR repeat fam 33.2 58 0.0013 19.6 2.8 25 112-136 24-48 (50)
39 cd03714 RT_DIRS1 RT_DIRS1: Rev 32.6 50 0.0011 24.3 2.9 24 223-246 34-57 (119)
40 PF14483 Cut8_M: Cut8 dimerisa 32.2 28 0.0006 20.3 1.1 19 31-49 12-30 (38)
41 PF12854 PPR_1: PPR repeat 30.3 94 0.002 17.2 3.2 32 120-151 1-32 (34)
42 cd01645 RT_Rtv RT_Rtv: Reverse 29.2 53 0.0011 27.2 2.8 27 221-247 127-153 (213)
43 COG5460 Uncharacterized conser 21.6 67 0.0014 21.9 1.6 25 50-74 51-75 (82)
44 COG2012 RPB5 DNA-directed RNA 21.5 62 0.0013 22.2 1.4 40 174-228 21-60 (80)
No 1
>KOG2223|consensus
Probab=100.00 E-value=1.4e-39 Score=282.09 Aligned_cols=219 Identities=41% Similarity=0.811 Sum_probs=203.8
Q ss_pred hhhHHHHHHhhhhcCCCCcCCCCCCccHHHHHHHHHHHHhhcCCCccccCchHHHHHHHHhcCCHHHHHHHHHHHhhccc
Q psy17384 4 DNTITQIRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLNKSV 83 (295)
Q Consensus 4 ~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~ 83 (295)
+..+.+|+.|+.||||+..+|+.++++++.|..||.||+.|+||+||+|||.+|+|+|++.++ +.+||.+|.+++++.+
T Consensus 353 e~sv~~i~LDisrTfpsl~iFqk~GPy~d~L~~lL~AYt~yRpDvgYVqgmSFIaAvLllnmd-~~~AFiafANLLdkp~ 431 (586)
T KOG2223|consen 353 EASVELIKLDISRTFPSLSIFQKGGPYHDDLHSLLGAYTCYRPDVGYVQGMSFIAAVLLLNMD-LADAFIAFANLLDKPC 431 (586)
T ss_pred hcchhheeechhccCcceeeeccCCchHHHHHHHhhhheeecCccccccchHHHHHHHHHcCC-cHHHHHHHHHHhccHH
Confidence 567889999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred hhhhcccChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCCChhhHHHHHHHHhhhhhhhhHHHHHhhcccccchhhHHhH
Q psy17384 84 FYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRA 163 (295)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~w~~~lf~~~l~~~~~~riwD~~~~~g~~~l~~~ 163 (295)
...+|..+.+.+..++..|+..+++..|+|+.||.+.++.|++|+++|+.++|++.+|++.++||||.|+.+|+.++++.
T Consensus 432 q~Aff~~d~s~m~~yf~tfe~~leenlp~L~~Hl~kl~l~PDiylidwiftlyskslpldlacRIwDvy~rdgeeFlfr~ 511 (586)
T KOG2223|consen 432 QQAFFRVDHSSMLSYFATFEVFLEENLPKLFTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVYCRDGEEFLFRT 511 (586)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHhccHHHHHHHHhccCCCchhhHHHHHHHHhccCChHHhhhhhheeeecchHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHhcccChHHHHHHHHHhCCCchhHHHHHHhhcccceeEEEcCCcCCceeccCCccCCCCCchHhHHHHHHHHHH
Q psy17384 164 ALDFKKAYDSIDRETLFNILEEYGADAKTVAIIKESLQATKSKIKFMGDISNPFEIKTGVRQGDGLSPLLFNCVLEKVIR 243 (295)
Q Consensus 164 ~l~i~kafd~v~~~~l~~~L~~~g~~~~~~~~I~~~l~~~~~~v~~~~~~s~~~~~~~G~~Qg~~lsp~lF~~~~~~l~~ 243 (295)
+++++|.|+. .|-
T Consensus 512 ~lgIlklyep----------------------------------------------------------kLl--------- 524 (586)
T KOG2223|consen 512 ALGILKLYEP----------------------------------------------------------KLL--------- 524 (586)
T ss_pred HHHHHHHccc----------------------------------------------------------hHh---------
Confidence 9999999988 110
Q ss_pred HHHhhhhcccccccCCCCCCCHHHHHHHHhhhhhhhhhhhHHHHHHhhh
Q psy17384 244 EWRIISKEGSKFLTKLPDNMDADKLFKSIAQMSVSIYRKSYETILEHHK 292 (295)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (295)
...+++...++.++|.++.++.+|..||.+.+---.|++.|+++...
T Consensus 525 --~mDf~~~~qfLtklp~dL~~eelF~~i~~~~~~sr~kkwsqvf~~i~ 571 (586)
T KOG2223|consen 525 --VMDFIHVAQFLTKLPEDLTPEELFMHIAYIQMQSRSKKWSQVFQEID 571 (586)
T ss_pred --hhhHHHHHHHHHhCcccCCHHHHHHHHHHHhhhhhchhHHHHHHHHH
Confidence 11133445678999999999999999999999888888999988764
No 2
>KOG2058|consensus
Probab=100.00 E-value=6.7e-38 Score=279.55 Aligned_cols=168 Identities=30% Similarity=0.523 Sum_probs=161.2
Q ss_pred hhHHHHHHhhhhcCCCC-cCCCCCC-ccHHHHHHHHHHHHhhcCCCccccCchHHHHHHHHhcCCHHHHHHHHHHHhhcc
Q psy17384 5 NTITQIRLDISRTFPHL-CLFQNEG-PYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLNKS 82 (295)
Q Consensus 5 ~~~~~I~~Dv~Rt~~~~-~~f~~~~-~~~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~ 82 (295)
.+.+||+.|+.||||++ +.|...+ .++++|+|||.||+.+||+||||||||++||++|+++++|++|||+++.+++++
T Consensus 195 ~~~~qI~~DL~RTfP~n~~~~~~~~~~~~~~LrRvL~Aya~hNp~vGYCQGmNflAallLL~~~~EE~AFW~Lv~iie~~ 274 (436)
T KOG2058|consen 195 PVVKQIKLDLPRTFPDNFKGFDSEDSDGRQTLRRVLLAYARHNPSVGYCQGMNFLAALLLLLMPSEEDAFWMLVALIENY 274 (436)
T ss_pred hHHHHHHhccccccCCCcccCCCCCchHHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHhcCChHHHHHHHHHHHHHh
Confidence 48899999999999999 7888764 358999999999999999999999999999999999999999999999999999
Q ss_pred chhhhcccChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCCChhhHHHHHHHHhhhhhhhhHHHHHhhcccccchhhHHh
Q psy17384 83 VFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFR 162 (295)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~w~~~lf~~~l~~~~~~riwD~~~~~g~~~l~~ 162 (295)
.+. ||+++..+.+....+++.+++..+|+|+.|+...++...+++.+||+++|+..+|.+.++||||.++.+|.+++++
T Consensus 275 lp~-Yyt~nL~g~qvDQ~VL~~llre~lPkl~~~l~~~~~~~~l~t~~wfLt~f~d~lP~~t~LrIwD~~f~eGskvlfr 353 (436)
T KOG2058|consen 275 LPR-YYTPNLIGSQVDQKVLRELLREKLPKLSLHLEGNGVDASLETLPWFLTLFVDILPSETVLRIWDCLFYEGSKVLFR 353 (436)
T ss_pred chh-hcCchhhhhhccHHHHHHHHHHHCHHHHHhhhhcCCCeeeeehhhhHHHhcccccHHHHHHHHHHHHhcccHHHHH
Confidence 986 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHhcc
Q psy17384 163 AALDFKKAYDS 173 (295)
Q Consensus 163 ~~l~i~kafd~ 173 (295)
+++++++..+.
T Consensus 354 ~Alai~k~~ee 364 (436)
T KOG2058|consen 354 VALAILKKHEE 364 (436)
T ss_pred HHHHHHHHhHH
Confidence 99999998877
No 3
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=100.00 E-value=1.5e-34 Score=240.43 Aligned_cols=151 Identities=32% Similarity=0.662 Sum_probs=141.7
Q ss_pred hHHHHHHhhhhcCCCCcCCCCC-CccHHHHHHHHHHHHhhcCCCccccCchHHHHHHHHhcCCHHHHHHHHHHHhhccch
Q psy17384 6 TITQIRLDISRTFPHLCLFQNE-GPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLNKSVF 84 (295)
Q Consensus 6 ~~~~I~~Dv~Rt~~~~~~f~~~-~~~~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~~ 84 (295)
..+||++||.||+|+++.|+.. +.+++.|+|||.+|+.++|++||||||++||++++.++++|++|||+|.+++++..+
T Consensus 46 ~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~~~~~~~p~~gY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~~ 125 (199)
T smart00164 46 IVHQIEKDLRRTFPEHSFFQDKEGPGQESLRRVLKAYALYNPEVGYCQGMNFLAAPLLLVMPDEEDAFWCLVKLMERYGP 125 (199)
T ss_pred hHHHHhcccCCCCCCchhhcCCCcccHHHHHHHHHHHHHHCCCCceeccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCc
Confidence 4689999999999999999864 467999999999999999999999999999999999997899999999999998775
Q ss_pred hhhcccChHhHHHHHHHHHHHHHhhChhhhhHHHh-cCCCChhhHHHHHHHHhhhhhhhhHHHHHhhcccccch
Q psy17384 85 YVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHS-CGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGE 157 (295)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~-~~i~~~~~~~~w~~~lf~~~l~~~~~~riwD~~~~~g~ 157 (295)
.+|.++.+++...+..++.++++.+|++++||++ .|+.+..|+.+|++++|++++|.+.+.|+||.++.+|.
T Consensus 126 -~~~~~~~~~~~~~~~~~~~ll~~~~p~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~riwD~~l~eG~ 198 (199)
T smart00164 126 -NFYLPDMSGLQLDLLQLDRLVKEYDPDLYKHLKDKLGIDPSLYALRWFLTLFARELPLEIVLRIWDVLFAEGS 198 (199)
T ss_pred -ccCCCChHHHHHHHHHHHHHHHHHCHHHHHHHHHhcCCCchhHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Confidence 6678888889999999999999999999999996 99999999999999999999999999999999999984
No 4
>COG5210 GTPase-activating protein [General function prediction only]
Probab=99.97 E-value=3.3e-31 Score=248.02 Aligned_cols=169 Identities=29% Similarity=0.530 Sum_probs=159.3
Q ss_pred hhHHHHHHhhhhcCCCCcCCCCCCccHH-HHHHHHHHHHhhcCCCccccCchHHHHHHHHhcCCHHHHHHHHHHHhhccc
Q psy17384 5 NTITQIRLDISRTFPHLCLFQNEGPYYN-TLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLNKSV 83 (295)
Q Consensus 5 ~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~-~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~ 83 (295)
.+.++|++|+.||+|++..|+.....+. .|+|||.+|+.++|++||||||++++|+|+.++.+|++||||+++++....
T Consensus 255 ~~~~~i~~Dl~rt~~~~~~f~~~~s~~~~~L~rvL~ays~~~p~vgY~QgMn~l~a~ll~~~~~Ee~AF~~l~~L~~~~~ 334 (496)
T COG5210 255 EIISQIEKDLSRTFPDNSLFQTEISIRAENLRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVLESEEQAFWCLVKLLKNYG 334 (496)
T ss_pred HHHHHHHccccccccccccccCcccccHHHHHHHHHHHHhcCCCCceeccHHHHHHHHHHHhhhhHHHHHHHHHHHHhcc
Confidence 4689999999999999999987654333 599999999999999999999999999999999999999999999999666
Q ss_pred hhhhcccChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCCChhhHHHHHHHHhhhhhhhhHHHHHhhcccccchhhHHhH
Q psy17384 84 FYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRA 163 (295)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~w~~~lf~~~l~~~~~~riwD~~~~~g~~~l~~~ 163 (295)
...+|..+..++......+..+++..+|++|+|+...|+.+.+|+++|++++|.+.+|.+.+.||||.++.+|..+++.+
T Consensus 335 l~~~~~~~~~G~~~~~~~l~~~v~~~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~~l~~~ 414 (496)
T COG5210 335 LPGYFLKNLSGLHRDLKVLDDLVEELDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQL 414 (496)
T ss_pred chhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccHHHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHhcc
Q psy17384 164 ALDFKKAYDS 173 (295)
Q Consensus 164 ~l~i~kafd~ 173 (295)
++++++....
T Consensus 415 ~~~~l~~~~~ 424 (496)
T COG5210 415 ALAILKLLRD 424 (496)
T ss_pred HHHHHHhhhh
Confidence 9999988876
No 5
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=99.97 E-value=3.5e-31 Score=222.46 Aligned_cols=167 Identities=32% Similarity=0.613 Sum_probs=147.7
Q ss_pred hhhHHHHHHhhhhcCCCCcCCCCCCccHHHHHHHHHHHHhhcCCCccccCchHHHHHHHHhcCCHHHHHHHHHHHhhccc
Q psy17384 4 DNTITQIRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLNKSV 83 (295)
Q Consensus 4 ~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~ 83 (295)
.+..++|++|+.||+++...+.. +.+++.|.+||.+|+.++|++||+|||++|+++++....+|++|||++.+++ +..
T Consensus 44 ~~~~~~I~~Dv~rt~~~~~~~~~-~~~~~~l~~iL~~~~~~~~~~~Y~qG~~~i~~~ll~~~~~e~~af~~~~~l~-~~~ 121 (214)
T PF00566_consen 44 NKIFEQIDKDVNRTFPNSFLFKN-EQNQKSLERILSAYAKYNPDVGYCQGMNDIAAPLLLVFLDEEEAFWCFVQLL-NYY 121 (214)
T ss_dssp HTCHHHHHHHHCTSSTSCCCSTT-HHHHHHHHHHHHHHHHHTTTTSS-TTHHHHHHHHHHTCSHHHHHHHHHHHHH-THH
T ss_pred chHHHHHHHhhhhhcccchhhhh-cchHHHHHHHHHHhccccccccccchhhhhhhhhhhhcccccchhccccchh-ccc
Confidence 46689999999999995544444 3569999999999999999999999999999999977777999999999999 444
Q ss_pred hhhhcccChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCCChhhHHHHHHHHhhhhhhhhHHHHHhhcccccchhh-HHh
Q psy17384 84 FYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVF-IFR 162 (295)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~w~~~lf~~~l~~~~~~riwD~~~~~g~~~-l~~ 162 (295)
...+|.++.+++...+..++.++++++|++++|+++.|+.+..++.+|+.++|++.+|.+.+.|+|| ++.+|.++ ++.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~ll~~~~P~l~~~l~~~~~~~~~~~~~w~~~lF~~~l~~~~~~~lwD-~l~~g~~~~l~~ 200 (214)
T PF00566_consen 122 LPDFFQPNFKGLQKILKIFEQLLKKHDPELYNHLKQLGVDPEIYAFPWFLTLFSRSLPFDDVLRLWD-FLLEGYKFFLFF 200 (214)
T ss_dssp GGGGTSTTHHHHHHHHHHHHHHHHHHTHHHHHHHHHTT-GGHHHHHHHHHTTTTTTS-HHHHHHHHH-HHHHCTTHHHHH
T ss_pred ccccccccccccchhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhHhhcCCcCCHHHHHHHHH-HHHcCCCcHHHH
Confidence 5788888888899999999999999999999999999999999999999999999999999999999 77788877 888
Q ss_pred HHhHHHHHhcc
Q psy17384 163 AALDFKKAYDS 173 (295)
Q Consensus 163 ~~l~i~kafd~ 173 (295)
+++++++.+++
T Consensus 201 ~~lail~~~~~ 211 (214)
T PF00566_consen 201 IALAILKYLRD 211 (214)
T ss_dssp HHHHHHHHTHH
T ss_pred HHHHHHHHHHH
Confidence 99999988765
No 6
>KOG2222|consensus
Probab=99.95 E-value=5.7e-28 Score=212.47 Aligned_cols=183 Identities=25% Similarity=0.410 Sum_probs=169.6
Q ss_pred hHHHHHHhhhhcCCCCcCCCC-CCccHHHHHHHHHHHHhhcCCCccccCchHHHHHHHHhcCCHHHHHHHHHHHhhccch
Q psy17384 6 TITQIRLDISRTFPHLCLFQN-EGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLNKSVF 84 (295)
Q Consensus 6 ~~~~I~~Dv~Rt~~~~~~f~~-~~~~~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~~ 84 (295)
+-.||++|+-|+.|++..|.+ ++.|.+.|+|||++.+...|++||||||.-|++.+|+++. |+.|||++..+++...+
T Consensus 211 ~~~qiekdllr~lpnn~cf~k~n~~gi~~lrrilk~ia~ifpdigycqg~gviva~lllf~~-ee~afwmmaaiiedilp 289 (848)
T KOG2222|consen 211 IGKQIEKDLLRILPNNACFSKKNGEGIEALRRILKCIAFIFPDIGYCQGMGVIVACLLLFCE-EENAFWMMAAIIEDILP 289 (848)
T ss_pred hhHHHHHHHHHhCCCcceeeCCCCcchHHHHHHHhhheeecCCcccccCccHHHHHHHHHhc-chhHHHHHHHHHHHhcC
Confidence 457999999999999988876 4688999999999999999999999999999999999999 99999999999999999
Q ss_pred hhhcccChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCCChhhHHHHHHHHhhhhhhhhHHHHHhhcccccchhhHHhHH
Q psy17384 85 YVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAA 164 (295)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~w~~~lf~~~l~~~~~~riwD~~~~~g~~~l~~~~ 164 (295)
..||+...-++++.-.+...+++.+.|.+-+.++.+++..+.....||+|+|..++-....+||||.++.+|.-.++++.
T Consensus 290 ~nfysqtllgiqaderv~~~li~~~l~~ldeal~~~dielslitl~w~ltlf~nv~~~killriwd~~fy~g~i~ifql~ 369 (848)
T KOG2222|consen 290 ANFYSQTLLGIQADERVMHHLIACHLPDLDEALEDHDIELSLITLHWFLTLFANVFHMKILLRIWDFFFYEGGINIFQLI 369 (848)
T ss_pred chhhhhhHhccchhHHHHHHHHHhccCchhHHHHhccceeeehHHHHHHHHHHHHHHHHHHHHHHHhheecCcchhHHHH
Confidence 99999988999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhcc---------cChHHHHHHHHHhCCC
Q psy17384 165 LDFKKAYDS---------IDRETLFNILEEYGAD 189 (295)
Q Consensus 165 l~i~kafd~---------v~~~~l~~~L~~~g~~ 189 (295)
+.++|.-+. -+...+++.|..++-.
T Consensus 370 i~ilkmkeqdi~~iaettensa~if~als~ip~~ 403 (848)
T KOG2222|consen 370 IGILKMKEQDIKEIAETTENSADIFNALSDIPAE 403 (848)
T ss_pred HHHHHhhHHHHHHHHHhcccHHHHHHHHHhCCch
Confidence 999988655 3667777777776554
No 7
>KOG4567|consensus
Probab=99.95 E-value=7e-28 Score=202.05 Aligned_cols=184 Identities=24% Similarity=0.405 Sum_probs=152.5
Q ss_pred hhhHHHHHHhhhhcCCCCcCCCCCC--c------------------------cHHHHHHHHHHHHhhcCCCccccCchHH
Q psy17384 4 DNTITQIRLDISRTFPHLCLFQNEG--P------------------------YYNTLHYMLASYVSYNTRISYVQGMSYI 57 (295)
Q Consensus 4 ~~~~~~I~~Dv~Rt~~~~~~f~~~~--~------------------------~~~~L~~IL~~~~~~~p~igY~QGm~~i 57 (295)
-+.+.||++||.||.|+..+|+... + ......|||..||..||.+||+||||.|
T Consensus 118 ~e~l~QIdrDvrr~~pdi~ff~~~~~~p~~~~~~~~~~i~~~q~~~~n~~gl~~~~~erilfiyAKLNpGi~YVQGMNEI 197 (370)
T KOG4567|consen 118 CEVLLQIDRDVRRTHPDISFFQLASSYPCRQGMDSRRRINASQEAGRNRLGLTRFAAERILFIYAKLNPGIGYVQGMNEI 197 (370)
T ss_pred hHHHHHHHHHHHHhCcchHhhhhccccccccchhhHhhhhhhhHhhhcccchhhhHHHHHHHHHhhcCCcchHHhhhHHH
Confidence 4778999999999999999998521 1 1223578999999999999999999999
Q ss_pred HHHHHHhcC----------CHHHHHHHHHHHhhccchhhhcc----cChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCC
Q psy17384 58 CALFILNIS----------TAYEAFVCFCNFLNKSVFYVFYS----LNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLT 123 (295)
Q Consensus 58 ~~~ll~~~~----------~e~~af~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~ 123 (295)
+||++.++. .|++||.||+++|... +++|. .+..+++..+..+..++++++-+||.|+++.++.
T Consensus 198 laPiYYVfa~Dpd~e~~~~aEaDaFFCF~~LMsei--rDnf~k~LDdS~~GI~~~Msr~~~~lk~~D~EL~~~L~~~~i~ 275 (370)
T KOG4567|consen 198 LAPIYYVFANDPDEENRAYAEADAFFCFTQLMSEI--RDNFIKTLDDSVGGIHFLMSRLSELLKKHDEELWRHLEEKEIH 275 (370)
T ss_pred hhhhheeeccCCchhhHHhhhhhHHHHHHHHHHHH--HHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHhcCCC
Confidence 999999875 4889999999999875 34443 3345677778999999999999999999999999
Q ss_pred ChhhHHHHHHHHhhhhhhhhHHHHHhhcccccchh--hHHhHHhHHHHHhcc----cChHHHHHHHHHhCCC
Q psy17384 124 PDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEV--FIFRAALDFKKAYDS----IDRETLFNILEEYGAD 189 (295)
Q Consensus 124 ~~~~~~~w~~~lf~~~l~~~~~~riwD~~~~~g~~--~l~~~~l~i~kafd~----v~~~~l~~~L~~~g~~ 189 (295)
|..|+++|+..+++.++|++.+.++||..++...+ ++..++.+++-.-+. -|++.-++.|++.+..
T Consensus 276 PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~rfd~Ll~iCcsmlil~Re~il~~DF~~nmkLLQ~yp~t 347 (370)
T KOG4567|consen 276 PQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQRFDFLLYICCSMLILVRERILEGDFTVNMKLLQNYPTT 347 (370)
T ss_pred ccchhHHHHHHHHhccCCchhHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhcCCCC
Confidence 99999999999999999999999999999987644 555666665544443 4777777888877553
No 8
>KOG1092|consensus
Probab=99.93 E-value=6.2e-26 Score=197.27 Aligned_cols=197 Identities=21% Similarity=0.316 Sum_probs=176.8
Q ss_pred hhHHHHHHhhhhcCCCCcCCCCCCccHHHHHHHHHHHHhhcCCCccccCchHHHHHHHHhcC------------------
Q psy17384 5 NTITQIRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNIS------------------ 66 (295)
Q Consensus 5 ~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~------------------ 66 (295)
+..+||..|+.|+.|+...|+.... ++.+.|||..++.++|-.||+||.++++.+++.++-
T Consensus 242 d~~rQI~id~prm~p~~~l~q~~~v-q~~lerIl~iwairhpAsGyvqgindlvtpf~vvfl~e~l~~~~~~~~~d~~~l 320 (484)
T KOG1092|consen 242 DTWRQIPIDIPRMNPHIPLFQQKIV-QEMLERILYIWAIRHPASGYVQGINDLVTPFFVVFLSEYLGPIMDVESIDMSLL 320 (484)
T ss_pred ccccccccCCCCCCccccchhhHHH-HHHHHHHHHHHHHhcccccccccceeeechhhhhhhHhhcCccccccccchhhc
Confidence 4678999999999999999988754 899999999999999999999999999999886541
Q ss_pred -------CHHHHHHHHHHHhhccchhhhcccChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCCChhhHHHHHHHHhhhh
Q psy17384 67 -------TAYEAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKA 139 (295)
Q Consensus 67 -------~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~w~~~lf~~~ 139 (295)
-|++||||+.+|++.+ +..|...++|++...+.++.+++..++++++||+++|++-..|+++|+-+|+.++
T Consensus 321 ~~E~~~~iEADsyWClskLLD~I--QDNYtfaQpGIq~kV~~L~eLv~RID~~~hkHlq~~gveylQFAFRWmNcLLmRE 398 (484)
T KOG1092|consen 321 PAENAEDIEADAYWCLSKLLDGI--QDNYTFAQPGIQRKVKNLKELVQRIDEPLHKHLQEHGVEYLQFAFRWMNCLLMRE 398 (484)
T ss_pred cHHHHhhhhhhHHHHHHHHHHHh--hhhhhhcChhHHHHHHHHHHHHHHhcHHHHHHHHHhchHHHHHHHHHHHHHHHhh
Confidence 4889999999999985 5677888899999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHhhcccccc---hhhHHhHHhHHHHHhcc----cChHHHHHHHHHhCCCchhHHHHHHhhcccc
Q psy17384 140 MGLDLVCKIWDLVMRDG---EVFIFRAALDFKKAYDS----IDRETLFNILEEYGADAKTVAIIKESLQATK 204 (295)
Q Consensus 140 l~~~~~~riwD~~~~~g---~~~l~~~~l~i~kafd~----v~~~~l~~~L~~~g~~~~~~~~I~~~l~~~~ 204 (295)
+|++.+.|+||.|++++ ..++.+++.|++-.+.+ .|+.+++-.|++++...+--+-|.-+++++.
T Consensus 399 ~pl~~~iRlWDTY~aE~dgf~~FhvYvcAAFL~kW~~eL~e~DFQ~~ilfLQnlPT~~W~d~eIellLseA~ 470 (484)
T KOG1092|consen 399 FPLRCTIRLWDTYLAEPDGFNEFHVYVCAAFLLKWSSELMENDFQELILFLQNLPTHNWSDREIELLLSEAF 470 (484)
T ss_pred ccchhHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCccHHHHHHHHHHHH
Confidence 99999999999999996 45677888898877766 7999999999999998888777777776653
No 9
>KOG4436|consensus
Probab=99.91 E-value=2.7e-24 Score=199.31 Aligned_cols=181 Identities=23% Similarity=0.431 Sum_probs=165.7
Q ss_pred hhhHHHHHHhhhhcCCCCcCCCCC-CccHHHHHHHHHHHHhhcCCCccccCchHHHHHHHHhcCCHHHHHHHHHHHhhcc
Q psy17384 4 DNTITQIRLDISRTFPHLCLFQNE-GPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLNKS 82 (295)
Q Consensus 4 ~~~~~~I~~Dv~Rt~~~~~~f~~~-~~~~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~ 82 (295)
.+..+.|-.|+-||||++++|+.. +.++..+.|+|.+|+..+|++|||||..++||+||+++. |+.||.++..+|...
T Consensus 619 te~qhAi~idlgrtfp~h~~~~~qlg~gqlsl~n~Lkayslld~e~gycqg~~fv~gvlllh~~-e~~afellk~LM~~r 697 (948)
T KOG4436|consen 619 TEQQHAILIDLGRTFPTHPYFSDQLGLGQLSLFNLLKAYSLLDPEVGYCQGLSFVAGVLLLHMS-EENAFELLKFLMFDR 697 (948)
T ss_pred HHHHHHHHHhhccccCCCHHHHhhccccHHHHHHHHHHhcccCccccccCcchhhhhhhHhhcc-hhhHHHHHHHHHHHH
Confidence 355677999999999999999975 788999999999999999999999999999999999999 999999999999988
Q ss_pred chhhhcccChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCCChhhHHHHHHHHhhhhhhhhHHHHHhhcccccchhhHHh
Q psy17384 83 VFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFR 162 (295)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~w~~~lf~~~l~~~~~~riwD~~~~~g~~~l~~ 162 (295)
..+.-|.++...++..+..+..+++.+.|+||+|++++.+.|+.|+.+|++|.|+..+|...+.|++|..+.+|..++++
T Consensus 698 ~~r~qy~pdm~~lq~qmyqLsrl~hd~hrdlyn~le~~ei~pslyAapw~lt~fasQf~lGfvarvfd~~flq~tevifK 777 (948)
T KOG4436|consen 698 GMRKQYRPDMKKLQIQMYQLSRLLHDYHRDLYNHLEENEISPSLYAAPWFLTVFASQFPLGFVARVFDLIFLQGTEVIFK 777 (948)
T ss_pred hhHhhhchHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccChHHhhhHHHHHHHHhhCcchHHHHHHHHHHhhccchhhh
Confidence 88888888888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHhcc-----cChHHHHHHHHH
Q psy17384 163 AALDFKKAYDS-----IDRETLFNILEE 185 (295)
Q Consensus 163 ~~l~i~kafd~-----v~~~~l~~~L~~ 185 (295)
++++++...+. -+.+.+..+++.
T Consensus 778 ~a~~llsv~k~~l~e~dn~e~i~d~~k~ 805 (948)
T KOG4436|consen 778 VALSLLSVHKQLLLEKDNFEEIVDFLKT 805 (948)
T ss_pred hHHHHHHhhHHHHHhhhhHHHHHHHHHH
Confidence 99999877644 355555555543
No 10
>KOG4347|consensus
Probab=99.91 E-value=7.4e-25 Score=199.80 Aligned_cols=166 Identities=23% Similarity=0.358 Sum_probs=154.9
Q ss_pred hhhHHHHHHhhhhcCCCCcCCCCCCccHHHHHHHHHHHHhhcCCCccccCchHHHHHHHHhcCCHHHHHHHHHHHhhccc
Q psy17384 4 DNTITQIRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLNKSV 83 (295)
Q Consensus 4 ~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~ 83 (295)
....+.|++|+.|..|+++-|+.+. +...|+|||.||++.||+|||||.||-+++.++.+.. |++|||+++.+.+...
T Consensus 241 ~~a~eEIE~Dl~rsLpEhpA~Q~e~-gi~aLR~vL~Aya~~Np~vGYcQaMNIV~s~lll~~~-EEeafwll~~lce~~i 318 (671)
T KOG4347|consen 241 SVATEEIEPDLGRSLPEHPAFQSEP-GIAALRRVLTAYAWSNPEVGYCQAMNIVGSELLLFCK-EEEAFWLLSKLCEIYI 318 (671)
T ss_pred ccccccccCCCCCCCCcchhhhCCC-chhhHHHHHHhhhccCCchhHHHHHHHHHHhhhhhhc-cchHHHHHHHHHHHhc
Confidence 3456789999999999999999864 5899999999999999999999999999999999999 9999999999999977
Q ss_pred hhhhcccChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCCChhhHHHHHHHHhhhhhhhhHHHHHhhcccccchhhHHhH
Q psy17384 84 FYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRA 163 (295)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~w~~~lf~~~l~~~~~~riwD~~~~~g~~~l~~~ 163 (295)
.+||+...-+......+|+.+++...|.+++|+.+.| ...+...+||+++|...+|++...||.|.|+.+|.++++.+
T Consensus 319 -p~yys~~vvGtliDQ~vfe~lve~~lP~l~~~~~~l~-~l~~Vsl~WFlslFls~m~le~a~~ilD~FF~eG~rvlFqi 396 (671)
T KOG4347|consen 319 -PDYYSKTVVGTLIDQSVFEELVEDTLPVLGEHLAVLG-QLSTVSLSWFLSLFLSLMPLEYAVRILDCFFYEGPRVLFQI 396 (671)
T ss_pred -ccccchhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhc-ccceEeeHHHHHHHHHHcchHHHHHHHhhhhhcccHHHHHH
Confidence 5888888888888899999999999999999999999 66788999999999999999999999999999999999999
Q ss_pred HhHHHHHhcc
Q psy17384 164 ALDFKKAYDS 173 (295)
Q Consensus 164 ~l~i~kafd~ 173 (295)
+++++++...
T Consensus 397 aLail~~N~~ 406 (671)
T KOG4347|consen 397 ALAILKQNAE 406 (671)
T ss_pred HHHHHHhhHH
Confidence 9999998754
No 11
>KOG1093|consensus
Probab=99.90 E-value=3.3e-23 Score=186.29 Aligned_cols=167 Identities=25% Similarity=0.481 Sum_probs=152.5
Q ss_pred hhHHHHHHhhhhcCCCCcCCCCCCccHHHHHHHHHHHHhhcCCCccccCchHHHHHHHH-hcCCHHHHHHHHHHHhhccc
Q psy17384 5 NTITQIRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFIL-NISTAYEAFVCFCNFLNKSV 83 (295)
Q Consensus 5 ~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~-~~~~e~~af~~~~~l~~~~~ 83 (295)
.+.+||+.|+.|+.......+... ++++|+|+|.||+.++|...|.||+..+|+||+. ++++|+.||.|+..++-+++
T Consensus 389 ~tdrqievdiprchQyd~~lsSp~-~~r~lrRvLkawv~~s~~fvywqgldsLa~PFl~ln~Nne~laF~~~~~fi~kyc 467 (725)
T KOG1093|consen 389 STDRQIEVDIPRCHQYDELLSSPK-GHRKLRRVLKAWVTWSPIFVYWQGLDSLAAPFLYLNFNNELLAFACIATFIPKYC 467 (725)
T ss_pred cchhhhhcccchhhhcccccCCHH-HHHHHHHHHHHHHhcCcceeecCCChhhhhhHHHHhcCchHHHHHHHHHHHHHHH
Confidence 467899999999997777766654 5999999999999999999999999999999874 67789999999999999988
Q ss_pred hhhhccc-ChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCCChhhHHHHHHHHhhhhhhhhHHHHHhhcccccchhhHHh
Q psy17384 84 FYVFYSL-NIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFR 162 (295)
Q Consensus 84 ~~~~~~~-~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~w~~~lf~~~l~~~~~~riwD~~~~~g~~~l~~ 162 (295)
. .||.. +..-+..++.+|.+++..++|.|++||...|+.|+.|+++||+|+|++++|.+....+||..+..+..+.+.
T Consensus 468 q-~fflkdns~vikeyLs~f~~l~AfhDpeL~qHl~~~~f~~eLyAiPwflT~Fshvlpl~kil~LwD~lml~~~SFplm 546 (725)
T KOG1093|consen 468 Q-HFFLKDNSNVIKEYLSMFSQLLAFHDPELLQHLIDIGFIPELYAIPWFLTMFSHVLPLHKILHLWDNLMLGHSSFPLM 546 (725)
T ss_pred H-HHHhhcCchhHHHHHHHHHHHHHhcCHHHHHHHHHcCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCCccHHH
Confidence 4 55554 667788999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhHHHHHhcc
Q psy17384 163 AALDFKKAYDS 173 (295)
Q Consensus 163 ~~l~i~kafd~ 173 (295)
+++|++...++
T Consensus 547 i~vAil~~lR~ 557 (725)
T KOG1093|consen 547 IGVAILIQLRD 557 (725)
T ss_pred HHHHHHHHhhh
Confidence 99999988776
No 12
>KOG1102|consensus
Probab=99.87 E-value=1.3e-22 Score=183.55 Aligned_cols=176 Identities=31% Similarity=0.500 Sum_probs=159.2
Q ss_pred HHHHHHhhhhcCCCCcCCCC-CCccHHHHHHHHHHHHhhcCCCccccCchHHHHHHHHhcCCHHHHHHHHHHHhhccchh
Q psy17384 7 ITQIRLDISRTFPHLCLFQN-EGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLNKSVFY 85 (295)
Q Consensus 7 ~~~I~~Dv~Rt~~~~~~f~~-~~~~~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~ 85 (295)
.++| +|+.||+|.+..|.. .+.+++.+.+|+.+|+.++|++||||||..++++++.++. |++||+++++++.... .
T Consensus 186 ~~~~-~d~~Rt~~~~~~f~~~~~~~q~sl~~vl~a~s~~~~~~gy~q~m~~~a~~ll~~~~-ee~af~~lv~l~~~~~-~ 262 (397)
T KOG1102|consen 186 SEII-RDLSRTFPAHLLFRKRYGVGQRSLYNVLKAYSLYDPEVGYCQGMSSIAAPLLLYLP-EEEAFPLLVKLMKNYG-L 262 (397)
T ss_pred hHHH-hhccCcCcchhhhhhhcCcccccccccchhhcccCCCcccccchhhHhhhhhccCc-hhhhhhhhhhhhhccc-h
Confidence 4566 999999999999987 3567999999999999999999999999999999999999 9999999999999887 4
Q ss_pred hhcccChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCCChhhHHHHHHHHhhhhhhhhHHHHHhhcccccchhhHHhHHh
Q psy17384 86 VFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAAL 165 (295)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~w~~~lf~~~l~~~~~~riwD~~~~~g~~~l~~~~l 165 (295)
+.+..+..+++..+..++.+++...|+++.|+...++...+|+.+|++|+|+..+|+..+.|+||.++.+|...++.+++
T Consensus 263 ~~~~~~~~~l~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~s~w~~t~f~~k~p~~~~~ri~d~~~~~g~~i~~~~~~ 342 (397)
T KOG1102|consen 263 DLLSPGFSGLQRSFRQLQRLLKELIPKLLDHLLPQGIELSMYASQWFLTLFAAKFPLELVLRIWDALFVEGVSILFRFSL 342 (397)
T ss_pred hcccccCCchhhhHHHHHHHHHHhChhhhhhccccccccceeccceeeEeeeccccHHHHHHHhHHHHHhchHHHHHHHH
Confidence 55588899999999999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred HHHHHhcc----cChHHHHHHHHH
Q psy17384 166 DFKKAYDS----IDRETLFNILEE 185 (295)
Q Consensus 166 ~i~kafd~----v~~~~l~~~L~~ 185 (295)
++.+.... .+.+.+.+.+..
T Consensus 343 ~l~~~~~~~~~~~~~e~~~~~l~~ 366 (397)
T KOG1102|consen 343 ALLKHKADDLLDLDFESLLSYLRV 366 (397)
T ss_pred HHhhhhhHHHhhccHHHHHHHHhc
Confidence 88877765 456666666654
No 13
>KOG2224|consensus
Probab=99.82 E-value=1.5e-20 Score=164.19 Aligned_cols=167 Identities=20% Similarity=0.353 Sum_probs=132.1
Q ss_pred HHHHHHhhhhcCCCCcCCCCC-CccHHHHHHHHHHHHhhcCCCccccCchHHHHHHHHhcCCHHHHHHHHHHHhhccc--
Q psy17384 7 ITQIRLDISRTFPHLCLFQNE-GPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLNKSV-- 83 (295)
Q Consensus 7 ~~~I~~Dv~Rt~~~~~~f~~~-~~~~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~-- 83 (295)
.-.++|||.||.+++++|..+ +++.+.++|||..|+.|||.+||.|||+++.++.+.-..+|.++||||+.+|....
T Consensus 496 q~tvdkdvvrtdrnn~ff~gddnpn~e~mk~illn~avyn~~m~ysqgmsdllapvlcevqnesetfwcfvglmqgmsdl 575 (781)
T KOG2224|consen 496 QFTVDKDVVRTDRNNPFFCGDDNPNTESMKNILLNFAVYNPAMGYSQGMSDLLAPVLCEVQNESETFWCFVGLMQGMSDL 575 (781)
T ss_pred EEEEecceeeccCCCCcccCCCCCcHHHHHHHHHhheeecccccccccchhhcchhhhhhccccchhhhhhhhhccchhh
Confidence 335789999999999999964 67899999999999999999999988888888877766556666666666655210
Q ss_pred ----------------------hhhhc--ccChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCCC--hhhHHHHHHHHhh
Q psy17384 84 ----------------------FYVFY--SLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTP--DLYLLDWIYTLFS 137 (295)
Q Consensus 84 ----------------------~~~~~--~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~--~~~~~~w~~~lf~ 137 (295)
...+| ++....+...+-.+..+++...|..|+|+.++|-+. ..|+-+|++..|.
T Consensus 576 vapilaevldesdtfwcfvglmqna~fv~sp~d~dmd~~l~ylreliri~~~~fykhl~q~~ed~lellfchrwlllcfk 655 (781)
T KOG2224|consen 576 VAPILAEVLDESDTFWCFVGLMQNAFFVCSPRDEDMDHNLLYLRELIRIMHPHFYKHLEQHGEDGLELLFCHRWLLLCFK 655 (781)
T ss_pred hhhHHHhhhccccchhhhhhhhcceEEEeCCcchhhhHhHHHHHHHHHHhhHHHHHHHHHhCcchhhHHHHHHHHHHHhh
Confidence 01333 244456667777889999999999999999987443 3678899999999
Q ss_pred hhhhhhHHHHHhhcccccc--hhhHHhHHhHHHHHhcc
Q psy17384 138 KAMGLDLVCKIWDLVMRDG--EVFIFRAALDFKKAYDS 173 (295)
Q Consensus 138 ~~l~~~~~~riwD~~~~~g--~~~l~~~~l~i~kafd~ 173 (295)
+++|-..+.|+|+.++.+- .-+.+.++++|...|.+
T Consensus 656 ref~ea~airiweacwa~y~tdyfhlficlaiiaiy~d 693 (781)
T KOG2224|consen 656 REFPEAEAIRIWEACWAHYLTDYFHLFICLAIIAIYAD 693 (781)
T ss_pred hcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhh
Confidence 9999999999999998764 34556688888888755
No 14
>KOG1091|consensus
Probab=99.81 E-value=2.3e-19 Score=161.55 Aligned_cols=195 Identities=18% Similarity=0.244 Sum_probs=140.1
Q ss_pred hhhHHHHHHhhhhcCCCC-cCCCCCCccHHHHHHHHHHHHhhcCCCccccCchHHHHHHHHhcC----------------
Q psy17384 4 DNTITQIRLDISRTFPHL-CLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNIS---------------- 66 (295)
Q Consensus 4 ~~~~~~I~~Dv~Rt~~~~-~~f~~~~~~~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~---------------- 66 (295)
.|..+.|+.|+.||||.+ .+|+..+. +..|++||..|+..||++||-|||+++.|+++++..
T Consensus 102 ~EL~~~i~qDvsRtfPe~~~fFqs~~~-q~mLr~iLl~~~lehp~i~YrQGMHElLAPl~fVl~~D~q~l~h~se~~~~~ 180 (625)
T KOG1091|consen 102 AELEKTIDQDVSRTFPEHSLFFQSPEV-QGMLRRILLLYALEHPEIGYRQGMHELLAPLLFVLHVDNQALLHVSESLFDK 180 (625)
T ss_pred HHHHHhhcchhhccCcchhhhhcCchh-hHHHHHHHHHHHhhchhhhHHhhhhhhhhhhhhheehhHHHHHHHHHhhhhh
Confidence 467899999999999999 77777654 899999999999999999999999999999987653
Q ss_pred ---CHHH-----------HH--HHHHHHhhccc-----------------h-----hhhcccChHhHHHHHHHHHHHHHh
Q psy17384 67 ---TAYE-----------AF--VCFCNFLNKSV-----------------F-----YVFYSLNIRMMQAYYATYNDLFKY 108 (295)
Q Consensus 67 ---~e~~-----------af--~~~~~l~~~~~-----------------~-----~~~~~~~~~~~~~~~~~~~~ll~~ 108 (295)
.|.+ ++ .+++.+|..-. + ..-+.+..+.+......+..++.+
T Consensus 181 l~f~E~d~iy~~~y~k~d~dn~~lqs~lmls~~~~~e~e~g~~~~e~~ie~day~~~d~l~~~l~~v~e~~~~~~~lL~~ 260 (625)
T KOG1091|consen 181 LGFEERDVIYNFLYLKTDLDNTELQSVLMLSDEYGYEEELGIVLSEKLIEHDAYVMFDALMPGLPPVFEANFAQYHLLAK 260 (625)
T ss_pred cCcchhhhhhhHHHHhhhccchhHHHHHHhhhccccccCcceecCcccCCcCcccchhhhcccchhHHHHhhhhhhhhhh
Confidence 1222 22 23333332210 0 001112233344555678899999
Q ss_pred hChhhhhHHHhcCCCChhhHHHHHHHHhhhhhhhhHHHHHhh-cccccchhhH--HhHHhHHHHHhcc----cChHHHHH
Q psy17384 109 NLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWD-LVMRDGEVFI--FRAALDFKKAYDS----IDRETLFN 181 (295)
Q Consensus 109 ~~P~L~~hl~~~~i~~~~~~~~w~~~lf~~~l~~~~~~riwD-~~~~~g~~~l--~~~~l~i~kafd~----v~~~~l~~ 181 (295)
.++.++.||.+.|+.|.+|.++|+..||-++||+..++.+|| ..+.++.... -.++++++....+ .+....++
T Consensus 261 ~D~~Lh~HL~~l~i~pqifgiRWlRlLFGREfpL~dLLiVWD~~l~~d~pr~~Lv~~m~VsmLL~IRd~Llss~~~tcL~ 340 (625)
T KOG1091|consen 261 VDKSLHSHLVELGIEPQIFGIRWLRLLFGREFPLQDLLIVWDHVLIFDSPRGILVACMFVSMLLYIRDSLLSSEYQTCLQ 340 (625)
T ss_pred ccHHHHHHHHhcCCchHHHHHHHHHHHHcchhHHHHHHHHhhhhhhccCchHHHHHHHHHHHHHHHHHHHHHhcchhHHH
Confidence 999999999999999999999999999999999999999999 6666654432 3345555544333 45555666
Q ss_pred HHHHhCCCchhHHHHHHh
Q psy17384 182 ILEEYGADAKTVAIIKES 199 (295)
Q Consensus 182 ~L~~~g~~~~~~~~I~~~ 199 (295)
.|-+++...+.-..|+..
T Consensus 341 ~Lm~yP~~~Dv~~~iekA 358 (625)
T KOG1091|consen 341 YLMNYPEIIDVDKFIEKA 358 (625)
T ss_pred HHhcCCCcCcHHHHHHHH
Confidence 676666655544444433
No 15
>KOG2221|consensus
Probab=99.78 E-value=2.8e-19 Score=143.30 Aligned_cols=126 Identities=26% Similarity=0.457 Sum_probs=119.3
Q ss_pred hhHHHHHHhhhhcCCCCcCCCCC-CccHHHHHHHHHHHHhhcCCCccccCchHHHHHHHHhcCCHHHHHHHHHHHhhccc
Q psy17384 5 NTITQIRLDISRTFPHLCLFQNE-GPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLNKSV 83 (295)
Q Consensus 5 ~~~~~I~~Dv~Rt~~~~~~f~~~-~~~~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~ 83 (295)
++.+.|++|+.|.||.+.+|-.. +.+++.|.|+|.+|..++|+.||||+-..|+++++++++ +++|||||+++.+++.
T Consensus 141 ~t~e~i~kdl~rqfp~hemf~s~~k~gkqelfr~lka~ti~~pe~g~cq~qapiaa~llmhmp-~rdaf~~~vqicekyl 219 (267)
T KOG2221|consen 141 KTAEGIHKDLHRQFPFHEMFGSSGKTGKQELFRVLKAYTIYKPEEGYCQAQAPIAAVLLMHMP-ARDAFWCFVQICEKYL 219 (267)
T ss_pred cchhhhccccccCCCcccccccccccchHHHHHHHHHHHHhCchhhhhhhhchHHHHHHhccc-HHHHHHHHHHHHHHHc
Confidence 46789999999999999999874 577999999999999999999999999999999999999 9999999999999987
Q ss_pred hhhhcccChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCCChhhHHHHH
Q psy17384 84 FYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWI 132 (295)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~w~ 132 (295)
.+||.++.+.++..-.++..++++..|..|.|+...+++|..|...||
T Consensus 220 -qgy~~sgleaiq~dg~il~~Llkk~~~p~~rH~~~~kvdp~lym~ewF 267 (267)
T KOG2221|consen 220 -QGYYSSGLEAIQNDGGILEGLLKKASPPPYRHLGGDKVDPLLYMTEWF 267 (267)
T ss_pred -ccccccchhhhhcccHHHHHHHHhcCCCCCcccccCCCCHHHhhhccC
Confidence 699999999999999999999999999999999999999999999996
No 16
>KOG2197|consensus
Probab=99.76 E-value=3e-19 Score=164.80 Aligned_cols=164 Identities=21% Similarity=0.375 Sum_probs=143.8
Q ss_pred hhHHHHHHhhhhcCCCCcCCCCCC-ccHHHHHHHHHHHHhhcCCCccccCchHHHHHHHHhcCCHHHHHHHHHHHhhccc
Q psy17384 5 NTITQIRLDISRTFPHLCLFQNEG-PYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLNKSV 83 (295)
Q Consensus 5 ~~~~~I~~Dv~Rt~~~~~~f~~~~-~~~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~ 83 (295)
+-...|.+||.||.+.+.++.... ++...|..||.+|+.+++++||||||+++.++++.++++|.+|||||+.+|++.
T Consensus 236 ~~~~~i~~dv~rtDr~~~~~~~~~n~~~~~l~~iL~ty~~~~~d~GY~QgmSDllspi~~v~~de~~aFwcFv~fm~~~- 314 (488)
T KOG2197|consen 236 ERKSRIEKDVGRTDRSLEFYEGEENPHLARLVDILLTYAVYDFDLGYCQGMSDLLSPILIVMEDEVEAFWCFVGFMDRL- 314 (488)
T ss_pred hhhhhhhhhccccchhhhhhhcccccCHHHHHHHHhhcccccCccccccCchhhcCcceeeecCchHHHHHHHHHHHHH-
Confidence 345679999999999998888643 368999999999999999999999999999999999999999999999999984
Q ss_pred hhhhcccChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCCChhhHHHHHHHHhhhhhhhhHHHHHhhcccccc--hhhHH
Q psy17384 84 FYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDG--EVFIF 161 (295)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~w~~~lf~~~l~~~~~~riwD~~~~~g--~~~l~ 161 (295)
...|..+..++......+..+++..+|.+++|++..+...-.++++|+...|.+++..+.+.++|+..+..- ..+.+
T Consensus 315 -~~nF~~d~~~~~~Ql~~~~~li~~~dp~l~~hLe~~d~~~~~f~fr~l~v~frrEf~~ed~l~LWEvlw~~~~~~~f~~ 393 (488)
T KOG2197|consen 315 -RHNFRIDQSGMQTQLAQLSSLIQELDPRLYQHLEKLDAGDLFFCFRMLLVPFRREFEFEDSLRLWEVLWTDLPSPHFHL 393 (488)
T ss_pred -hhcCccccccHHHHhhhhhhhccccCHHHHhhccccCCCccceeeehhhcccccccccccHHHHHHHHHhcCccchHHH
Confidence 355667778888888888999999999999999999998889999999999999999999999999988764 34455
Q ss_pred hHHhHHHHH
Q psy17384 162 RAALDFKKA 170 (295)
Q Consensus 162 ~~~l~i~ka 170 (295)
+++.+++..
T Consensus 394 ~~~~~~l~~ 402 (488)
T KOG2197|consen 394 YVAPAILNK 402 (488)
T ss_pred HHHHhhhhc
Confidence 566666655
No 17
>KOG2595|consensus
Probab=99.74 E-value=8.8e-18 Score=143.05 Aligned_cols=192 Identities=18% Similarity=0.251 Sum_probs=145.5
Q ss_pred hhHHHHHHhhhhcCCCCcCCCC---CCccHHHHHHHHHHHHhhcCCCccccCchHHHHHHHHhcCCHHHHHHHHHHHhhc
Q psy17384 5 NTITQIRLDISRTFPHLCLFQN---EGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLNK 81 (295)
Q Consensus 5 ~~~~~I~~Dv~Rt~~~~~~f~~---~~~~~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~ 81 (295)
+...|+..|+.|++...+--.. ....++.|..++......+|++.|.||.++||..+++++. |.+|+.+..++...
T Consensus 95 kd~nQV~LDv~RSl~rfppg~p~~~R~~Lq~qL~~LI~rVl~~yP~L~YYQGyHDI~~tfLLv~g-E~~Al~l~E~L~~~ 173 (395)
T KOG2595|consen 95 KDYNQVILDVERSLGRFPPGIPKELRLQLQKQLTELILRVLRKYPTLNYYQGYHDIVVTFLLVVG-ELEALSLMEELSTL 173 (395)
T ss_pred cccceEEEehhhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCcchhcchhHHHHHHHHhhh-hHhhhHHHHHHHHH
Confidence 4567899999999855432111 1123567777777778899999999999999999999999 99999998888755
Q ss_pred cchhhhcccChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCCChhhHHHHHHHHhhhhh-hhhHHHHHhhcccccchhhH
Q psy17384 82 SVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAM-GLDLVCKIWDLVMRDGEVFI 160 (295)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~w~~~lf~~~l-~~~~~~riwD~~~~~g~~~l 160 (295)
. .++|+.+..++..+.+..+..+++..+|++|+.+++..+.+ +|+.+|++|||++.+ +++.+.|++|.+++...-..
T Consensus 174 ~-lrdfM~~Tld~t~~qL~~i~~iIk~~nP~Ly~~l~~aevgt-lFaLsWllTWFaH~L~~~~~vvRlfD~Flas~pl~p 251 (395)
T KOG2595|consen 174 H-LRDFMLPTLDFTVRQLRLISPIIKEVNPELYQFLQSAEVGT-LFALSWLLTWFAHNLKDIRIVVRLFDFFLASHPLLP 251 (395)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHhhcccc-eehhhHHHHHHhhcchhHHHHHHHHHHHHhcCcchh
Confidence 4 47888888899899999999999999999999999999888 899999999999998 69999999999998875544
Q ss_pred HhHHhHHHHHhcc------cChHHHHHHHHHhCCCchhHHHHHHh
Q psy17384 161 FRAALDFKKAYDS------IDRETLFNILEEYGADAKTVAIIKES 199 (295)
Q Consensus 161 ~~~~l~i~kafd~------v~~~~l~~~L~~~g~~~~~~~~I~~~ 199 (295)
.+++.++....++ -+-..+-..|..++-+-..-..|+..
T Consensus 252 iyv~A~vvL~r~~eIl~~~~dms~~H~lLs~iPq~lp~d~lik~s 296 (395)
T KOG2595|consen 252 IYVYAAVVLYRRSEILKCDCDMSLLHGLLSTIPQDLPYDTLIKES 296 (395)
T ss_pred HHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhCccccCHHHHHHHH
Confidence 4444444432222 12223334444444444444454443
No 18
>KOG4436|consensus
Probab=99.49 E-value=1.1e-13 Score=129.43 Aligned_cols=162 Identities=19% Similarity=0.317 Sum_probs=150.0
Q ss_pred hHHHHHHhhhhcCCCCcCCCCCCcc--------HHHHHHHHHHHHhhcCCCccccCchHHHHHHHHhcCCHHHHHHHHHH
Q psy17384 6 TITQIRLDISRTFPHLCLFQNEGPY--------YNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCN 77 (295)
Q Consensus 6 ~~~~I~~Dv~Rt~~~~~~f~~~~~~--------~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~~e~~af~~~~~ 77 (295)
++-.|..|+.||+|.+.+|++...+ ++.|.|+..+|....-++|||||-+.+++.+++.++ ++.+|..++.
T Consensus 227 ~~~~Irrdi~~~~~eh~~fke~~s~~~~~~~~~~d~LfN~~K~~~~~~~E~ifsqGs~~m~Gll~l~~~-~E~assv~~~ 305 (948)
T KOG4436|consen 227 HIGIIRRDIERTYPEHYFFKEQSSTVCSDIRFAQDQLFNVAKAYSTKDLEVIFSQGSAFMVGLLLLQMP-VEEASSVKVQ 305 (948)
T ss_pred HHHHHHHHhhccCcceeeeccCccCCcchhHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHhcCc-HHHHHHHHHH
Confidence 4558999999999999999987655 899999999999999999999999999999999999 9999999999
Q ss_pred HhhccchhhhcccChHhHHHHHHHHHHHHHhhCh-hhhhHHHhcCCCChhhHHHHHHHHhhhhhhhhHHHHHhhcccccc
Q psy17384 78 FLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLP-KLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDG 156 (295)
Q Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P-~L~~hl~~~~i~~~~~~~~w~~~lf~~~l~~~~~~riwD~~~~~g 156 (295)
+|..+.....+.+....+...+..++...+...| .++.|+.+.++..++|.-.||++.|...+|+....++.|.+..+|
T Consensus 306 lm~~~rl~~l~kpe~~~l~~~~~q~e~~~q~~sp~dl~sH~~eq~~h~S~~~rs~flt~~ltt~Pi~~a~r~~~~f~~eg 385 (948)
T KOG4436|consen 306 LMILYRLRELSKPEMEPLGLCMFQLECTNQDQSPMDLFSHFPEQHFHTSMYARSWFLTNFLTTFPIFMAARISDTFSSEG 385 (948)
T ss_pred HHHhhcccccCCcccchhHHHHHhhcccccccchhHHhhcccccCCCccHHHHHHHHHhhcccCchhhcccccccccccc
Confidence 9999888888888777777777788888999999 999999999999999999999999999999999999999999999
Q ss_pred hhhHHhHHhHHH
Q psy17384 157 EVFIFRAALDFK 168 (295)
Q Consensus 157 ~~~l~~~~l~i~ 168 (295)
-...++..+++.
T Consensus 386 llk~fr~~ia~~ 397 (948)
T KOG4436|consen 386 LLKRFRDSIAYL 397 (948)
T ss_pred HHHHHhhhHHHH
Confidence 877778888888
No 19
>KOG3636|consensus
Probab=99.15 E-value=2.7e-10 Score=100.91 Aligned_cols=176 Identities=22% Similarity=0.394 Sum_probs=126.9
Q ss_pred HHHHHHhhhhcCCCCcCCCCC-CccHHHHHHHHHHHHhhcCCCccccCch--HHHHHH-HHhcCCHHHHHHHHHHHhhcc
Q psy17384 7 ITQIRLDISRTFPHLCLFQNE-GPYYNTLHYMLASYVSYNTRISYVQGMS--YICALF-ILNISTAYEAFVCFCNFLNKS 82 (295)
Q Consensus 7 ~~~I~~Dv~Rt~~~~~~f~~~-~~~~~~L~~IL~~~~~~~p~igY~QGm~--~i~~~l-l~~~~~e~~af~~~~~l~~~~ 82 (295)
..+|++|..|-......=.++ .+-...|..++.-|+.. ..+.|..... .+.-++ ++.++ ..+.|.+|-.+++++
T Consensus 67 Q~~lr~DC~~~~d~l~n~ee~~v~vv~dlES~iTfYCK~-Rn~~Y~~d~gWi~lL~pl~~L~lp-rsd~fN~F~ai~~kY 144 (669)
T KOG3636|consen 67 QCALRNDCRKLADGLKNKEEDKVPVVSDLESFITFYCKK-RNMDYIKDIGWITLLEPLLLLNLP-RSDEFNVFFAITTKY 144 (669)
T ss_pred hhHHHHHHHHHHhhcCCchhhccchhHhhhhHhhhhhhc-cCCcccccccHHHHHHHHHHhcCC-cchhhhhhHhhhhcc
Confidence 457888887765443221111 22345789999988763 2444555443 333343 45566 899999999999999
Q ss_pred chhhhcccChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCCChhhHHHHHHHHhhhhhhhhHHHHHhhcccccchhhHHh
Q psy17384 83 VFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFR 162 (295)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~w~~~lf~~~l~~~~~~riwD~~~~~g~~~l~~ 162 (295)
.|++--..+ ..+..|.-+++.++|+|..||....+.|++|+..||-++|+...+.+.+..+||.|+..+..++..
T Consensus 145 IPkdcrpkg-----~~Fh~FRLLlqYHdPelc~~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaDPF~vf 219 (669)
T KOG3636|consen 145 IPKDCRPKG-----QIFHLFRLLLQYHDPELCNHLDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQADPFLVF 219 (669)
T ss_pred cCCCCCCCC-----ccchHHHHHHHhcCHHHhhhhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCceehH
Confidence 887654433 235678899999999999999999999999999999999999999999999999999999887542
Q ss_pred -HHhHHH-HHh------cccChHHHHHHHHHhCCC
Q psy17384 163 -AALDFK-KAY------DSIDRETLFNILEEYGAD 189 (295)
Q Consensus 163 -~~l~i~-kaf------d~v~~~~l~~~L~~~g~~ 189 (295)
+++-++ .|- ++-+.+..+++|+.++..
T Consensus 220 fLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~ 254 (669)
T KOG3636|consen 220 FLALIILINAKEEILQVKSDSKEEAIKFLENMPAQ 254 (669)
T ss_pred HHHHHHhcccHHHHhhhccccHHHHHHHHHcCchh
Confidence 222222 222 224678888888877554
No 20
>cd01651 RT_G2_intron RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin. RT transcribes DNA using RNA as template. Proteins in this subfamily are found in bacterial and mitochondrial group II introns. Their most probable ancestor was a retrotransposable element with both gag-like and pol-like genes. This subfamily of proteins appears to have captured the RT sequences from transposable elements, which lack long terminal repeats (LTRs).
Probab=99.13 E-value=2.2e-10 Score=96.75 Aligned_cols=81 Identities=27% Similarity=0.314 Sum_probs=69.3
Q ss_pred hHHhHHHHHhcccChHHHHHHHHHhCCCchhHHHHHHhhcccceeEEEcCCcCCceeccCCccCCCCCchHhHHHHHHHH
Q psy17384 162 RAALDFKKAYDSIDRETLFNILEEYGADAKTVAIIKESLQATKSKIKFMGDISNPFEIKTGVRQGDGLSPLLFNCVLEKV 241 (295)
Q Consensus 162 ~~~l~i~kafd~v~~~~l~~~L~~~g~~~~~~~~I~~~l~~~~~~v~~~~~~s~~~~~~~G~~Qg~~lsp~lF~~~~~~l 241 (295)
.+.+|+.++|++++|+.+.+.|+..+.+..+..++..++.... ...+......+|+|||+|+||+||+++++++
T Consensus 72 ~~~~Di~~~Fdsi~~~~l~~~l~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~GlpqG~~lSp~L~~~~l~~l 145 (226)
T cd01651 72 VIEGDIKGFFDNIDHDLLLKILKRRIGDKRVLRLIRKWLKAGV------LEDGKLVETEKGTPQGGVISPLLANIYLHEL 145 (226)
T ss_pred EEEccHHHhcCCCCHHHHHHHHHHhcccHHHHHHHHHHHhceE------ccCCeEeCCCCCcCCCccHHHHHHHHHHHHH
Confidence 3679999999999999999999999999999999998854332 1234456789999999999999999999999
Q ss_pred HHHHHhh
Q psy17384 242 IREWRII 248 (295)
Q Consensus 242 ~~~~~~~ 248 (295)
.+.+...
T Consensus 146 d~~l~~~ 152 (226)
T cd01651 146 DKFVEEK 152 (226)
T ss_pred HHHHHHh
Confidence 9888764
No 21
>cd03487 RT_Bac_retron_II RT_Bac_retron_II: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome.
Probab=98.98 E-value=8.6e-10 Score=92.61 Aligned_cols=70 Identities=23% Similarity=0.256 Sum_probs=60.4
Q ss_pred HhHHhHHHHHhcccChHHHHHHHHHhCCC-chhHHHHHHhhcccceeEEEcCCcCCceeccCCccCCCCCchHhHHHHHH
Q psy17384 161 FRAALDFKKAYDSIDRETLFNILEEYGAD-AKTVAIIKESLQATKSKIKFMGDISNPFEIKTGVRQGDGLSPLLFNCVLE 239 (295)
Q Consensus 161 ~~~~l~i~kafd~v~~~~l~~~L~~~g~~-~~~~~~I~~~l~~~~~~v~~~~~~s~~~~~~~G~~Qg~~lsp~lF~~~~~ 239 (295)
+.+.+|+.++|++++|+.|.+.|++.+.+ ..+..++..+.+. ..|+|||+|+||+||+++++
T Consensus 58 ~v~~~Di~~fFdsI~~~~L~~~l~~~~~~~~~~~~~l~~~~~~-----------------~~GlpQG~~lSp~Lanl~l~ 120 (214)
T cd03487 58 YVLKLDIKDFFPSITFERVRGVFRSLGYFSPDVATILAKLCTY-----------------NGHLPQGAPTSPALSNLVFR 120 (214)
T ss_pred EEEEeehhhhcccCCHHHHHHHHHHcCCCCHHHHHHHHHHHhC-----------------CCCcCCCCcccHHHHHHHHH
Confidence 34689999999999999999999999998 7777787766532 23999999999999999999
Q ss_pred HHHHHHHh
Q psy17384 240 KVIREWRI 247 (295)
Q Consensus 240 ~l~~~~~~ 247 (295)
++.+.+..
T Consensus 121 ~~d~~l~~ 128 (214)
T cd03487 121 KLDERLSK 128 (214)
T ss_pred HHHHHHHH
Confidence 99988765
No 22
>KOG2801|consensus
Probab=98.88 E-value=1.1e-08 Score=86.61 Aligned_cols=145 Identities=17% Similarity=0.234 Sum_probs=108.5
Q ss_pred ccHHHHHHHHHHHHhhcCCCccccCchHHHHHHHHhcCCHHHHHHHHHHHhhccch-hhhcccChHhHHHHHHHHHHHHH
Q psy17384 29 PYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLNKSVF-YVFYSLNIRMMQAYYATYNDLFK 107 (295)
Q Consensus 29 ~~~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~ll~ 107 (295)
.+....+.||.+.++..|++.+|+.+..++++++++.-||+++|.-.+.++.-.-+ +.....+.-.....+-.|..++.
T Consensus 109 rgegavrkilKOGanqfpdisfcpalpavvalllhysideaecfekacrilacndpgrrlidqsflafesscmtfgdlvn 188 (559)
T KOG2801|consen 109 RGEGAVRKILLCLANQFPDISFCPALPAVVALLLHYSIDEAECFEKACRILACNDPGRRLIDQSFLAFESSCMTFGDLVN 188 (559)
T ss_pred cCchhHHHHHHHHhccCCCcccCcchHHHHHHHHHhcccHHHHHHHhheeeeecCcchhhhhhHHHHHHhhhhhHHHHHH
Confidence 35668899999999999999999999999999999998899999888877654332 22223223334445556777776
Q ss_pred hhChhhhhHHHhcCCCChhhHHHHHHHHhhhhhhhhHHHHHhhcccccchhhHHhHHhHHHHHhccc
Q psy17384 108 YNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAALDFKKAYDSI 174 (295)
Q Consensus 108 ~~~P~L~~hl~~~~i~~~~~~~~w~~~lf~~~l~~~~~~riwD~~~~~g~~~l~~~~l~i~kafd~v 174 (295)
+.....++.+....-+......+|-..+| .++|+-...|++|.++.+|.+.+++++++++|.|.+|
T Consensus 189 kycqaahklmvavsedvlqvyadwqrwlf-gelplcyfarvfdvflvegykvlyrvalailkffhkv 254 (559)
T KOG2801|consen 189 KYCQAAHKLMVAVSEDVLQVYADWQRWLF-GELPLCYFARVFDVFLVEGYKVLYRVALAILKFFHKV 254 (559)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHh-ccchHHHHHHHhhheeecchHHHHHHHHHHHHHHHHh
Confidence 66655555443322222233456777666 5799999999999999999999999999999999773
No 23
>PF00078 RVT_1: Reverse transcriptase (RNA-dependent DNA polymerase); InterPro: IPR000477 The use of an RNA template to produce DNA, for integration into the host genome and exploitation of a host cell, is a strategy employed in the replication of retroid elements, such as the retroviruses and bacterial retrons. The enzyme catalysing polymerisation is an RNA-directed DNA-polymerase, or reverse trancriptase (RT) (2.7.7.49 from EC). Reverse transcriptase occurs in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. Retroviral reverse transcriptase is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. The discovery of retroelements in the prokaryotes raises intriguing questions concerning their roles in bacteria and the origin and evolution of reverse transcriptases and whether the bacterial reverse transcriptases are older than eukaryotic reverse transcriptases [].; GO: 0003723 RNA binding, 0003964 RNA-directed DNA polymerase activity, 0006278 RNA-dependent DNA replication; PDB: 1MU2_B 3RWE_C 3DU6_B 3DU5_A 3KYL_A 2WOM_B 1DTQ_A 2OPS_A 3FFI_A 1VRU_B ....
Probab=98.73 E-value=6.6e-10 Score=92.76 Aligned_cols=88 Identities=35% Similarity=0.589 Sum_probs=79.6
Q ss_pred HHhHHhHHHHHhcccChHHHHHHHHHhCCCchhHHHHHHhhcccceeEEEcCCcCCceeccCCccCCCCCchHhHHHHHH
Q psy17384 160 IFRAALDFKKAYDSIDRETLFNILEEYGADAKTVAIIKESLQATKSKIKFMGDISNPFEIKTGVRQGDGLSPLLFNCVLE 239 (295)
Q Consensus 160 l~~~~l~i~kafd~v~~~~l~~~L~~~g~~~~~~~~I~~~l~~~~~~v~~~~~~s~~~~~~~G~~Qg~~lsp~lF~~~~~ 239 (295)
.+.+.+|+.++|++++++.+.+.+..++.+..++.|+..++.+....+..++.. ......+|+|||+++||++|+++++
T Consensus 64 ~~~~~~Di~~~f~sI~~~~l~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~glpqG~~~S~~l~~~~l~ 142 (214)
T PF00078_consen 64 LYFLKLDISKAFDSIPHHRLLRKLKRFGVPKKLIRLIQNLLSDRTAKVYLDGDL-SPYFQKRGLPQGSPLSPLLFNIYLD 142 (214)
T ss_dssp SEEEEEECCCCGGGSBBHTTTGGGGEEEEECCSCHHHHHHHHHHHH-EECGCSS-SEEEEESBS-TTSTCHHHHHHHHHH
T ss_pred cccceeccccccccceeeeccccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhccccc
Confidence 455789999999999999999999999999999999999999999999998875 8888999999999999999999999
Q ss_pred HHHHHHHhh
Q psy17384 240 KVIREWRII 248 (295)
Q Consensus 240 ~l~~~~~~~ 248 (295)
.+.+.+...
T Consensus 143 ~l~~~~~~~ 151 (214)
T PF00078_consen 143 DLDRELQQE 151 (214)
T ss_dssp HHHHHHHHH
T ss_pred ccccccccc
Confidence 999988764
No 24
>cd01646 RT_Bac_retron_I RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome.
Probab=98.69 E-value=7.8e-09 Score=82.57 Aligned_cols=79 Identities=22% Similarity=0.169 Sum_probs=61.9
Q ss_pred hHHHHHhcccChHHHHHHHHHhCCCchhHHHHHHhhcccceeEEEcCCcCCceeccCCccCCCCCchHhHHHHHHHHHHH
Q psy17384 165 LDFKKAYDSIDRETLFNILEEYGADAKTVAIIKESLQATKSKIKFMGDISNPFEIKTGVRQGDGLSPLLFNCVLEKVIRE 244 (295)
Q Consensus 165 l~i~kafd~v~~~~l~~~L~~~g~~~~~~~~I~~~l~~~~~~v~~~~~~s~~~~~~~G~~Qg~~lsp~lF~~~~~~l~~~ 244 (295)
+|+.++|++++|+.+...+++.+.+.....+++.+..... +..........+|+|||+++||+|+++++.++-..
T Consensus 1 lDi~~fF~sI~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~GlpqG~~lS~~L~~~~l~~~d~~ 75 (158)
T cd01646 1 LDISNFYDSIYTHSLPWALHGKIKAKQLLKLLRLLGNLLD-----LLLLSSQYGQTNGLPIGPLTSRFLANIYLNDVDHE 75 (158)
T ss_pred CchhhccCcchHHHHHHHHHhhhhhHhhhhhHHHHHHHHH-----HHHHhccCCCCceEccCcchHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999988877643332111 11123345578899999999999999999999888
Q ss_pred HHhh
Q psy17384 245 WRII 248 (295)
Q Consensus 245 ~~~~ 248 (295)
+...
T Consensus 76 i~~~ 79 (158)
T cd01646 76 LKSK 79 (158)
T ss_pred HHhc
Confidence 7753
No 25
>cd01709 RT_like_1 RT_like_1: A subfamily of reverse transcriptases (RTs). An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. These elements can be divided into two major groups. One group contains retroviruses and DNA viruses whose propagation involves an RNA intermediate. They are grouped together with transposable elements containing long terminal repeats (LTRs). The other group, also called poly(A)-type retrotransposons, contain fungal mitochondrial introns and transposable elements that lack LTRs.
Probab=98.61 E-value=1.2e-07 Score=83.07 Aligned_cols=94 Identities=21% Similarity=0.174 Sum_probs=73.9
Q ss_pred hHHhHHHHHhcccChHHHHHHHHHhCCCchhHHHHHHhhcccceeEEEcCCcCCceeccCCccCCCCCchHhHHHHHHHH
Q psy17384 162 RAALDFKKAYDSIDRETLFNILEEYGADAKTVAIIKESLQATKSKIKFMGDISNPFEIKTGVRQGDGLSPLLFNCVLEKV 241 (295)
Q Consensus 162 ~~~l~i~kafd~v~~~~l~~~L~~~g~~~~~~~~I~~~l~~~~~~v~~~~~~s~~~~~~~G~~Qg~~lsp~lF~~~~~~l 241 (295)
.+-.|+.+.|++++|+.|+..|+..+++.+|+..|+.+++..-... -+|.......-++|+|||.++||+|-|+|+..+
T Consensus 24 vvd~Dik~fFdsIpH~~Lm~vL~~~~~~~~wL~li~r~L~APl~~~-~dg~~~~~r~r~rGtPqGgviSplLaNiyL~~l 102 (346)
T cd01709 24 VVQSDFKWFGPSLPHSTILAVLKFFGVPEKWLDFFKKFLEAPLRFV-ADGPDAPPRIRKRGTPMSHALSDVFGELVLFCL 102 (346)
T ss_pred EEEeehHhhCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhCceeec-CCCCcccccccCCccCCCchhhHHHHHHHHHHH
Confidence 3579999999999999999999999999999999999998653322 122223445567899999999999999999988
Q ss_pred HHHHHhhhhccccccc
Q psy17384 242 IREWRIISKEGSKFLT 257 (295)
Q Consensus 242 ~~~~~~~~~~~~~~~~ 257 (295)
-..++... .|..+++
T Consensus 103 D~~v~~~~-~g~~l~R 117 (346)
T cd01709 103 DFAVNQAT-DGGLLYR 117 (346)
T ss_pred HHHHHhcC-CCceEEE
Confidence 87777643 3544444
No 26
>cd01648 TERT TERT: Telomerase reverse transcriptase (TERT). Telomerase is a ribonucleoprotein (RNP) that synthesizes telomeric DNA repeats. The telomerase RNA subunit provides the template for synthesis of these repeats. The catalytic subunit of RNP is known as telomerase reverse transcriptase (TERT). The reverse transcriptase (RT) domain is located in the C-terminal region of the TERT polypeptide. Single amino acid substitutions in this region lead to telomere shortening and senescence. Telomerase is an enzyme that, in certain cells, maintains the physical ends of chromosomes (telomeres) during replication. In somatic cells, replication of the lagging strand requires the continual presence of an RNA primer approximately 200 nucleotides upstream, which is complementary to the template strand. Since there is a region of DNA less than 200 base pairs from the end of the chromosome where this is not possible, the chromosome is continually shortened. However, a surplus of repetitive DNA at
Probab=98.57 E-value=5.3e-08 Score=73.86 Aligned_cols=33 Identities=24% Similarity=0.355 Sum_probs=29.5
Q ss_pred ceeccCCccCCCCCchHhHHHHHHHHHHHHHhh
Q psy17384 216 PFEIKTGVRQGDGLSPLLFNCVLEKVIREWRII 248 (295)
Q Consensus 216 ~~~~~~G~~Qg~~lsp~lF~~~~~~l~~~~~~~ 248 (295)
.+...+|+|||+|+||+||+++++.+.+.+...
T Consensus 13 ~~~~~~GlpQG~~lSp~L~nl~l~~l~~~~~~~ 45 (119)
T cd01648 13 YYRQKVGIPQGSPLSSLLCSLYYADLENKYLSF 45 (119)
T ss_pred hhhhcCcccCCcchHHHHHHHHHHHHHHHHHhh
Confidence 566899999999999999999999999887653
No 27
>cd01650 RT_nLTR_like RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities.
Probab=98.53 E-value=4.4e-08 Score=82.35 Aligned_cols=49 Identities=53% Similarity=0.813 Sum_probs=45.3
Q ss_pred HhHHhHHHHHhcccChHHHHHHHHHhCCCchhHHHHHHhhcccceeEEEcCCcCCceeccCCccCCCCCchHhHHHHHHH
Q psy17384 161 FRAALDFKKAYDSIDRETLFNILEEYGADAKTVAIIKESLQATKSKIKFMGDISNPFEIKTGVRQGDGLSPLLFNCVLEK 240 (295)
Q Consensus 161 ~~~~l~i~kafd~v~~~~l~~~L~~~g~~~~~~~~I~~~l~~~~~~v~~~~~~s~~~~~~~G~~Qg~~lsp~lF~~~~~~ 240 (295)
+.+.+|+.+|||+++|+.+...| |++||+++||+||++++++
T Consensus 83 ~~l~~Di~~aFdsi~~~~l~~~l--------------------------------------GipQG~~lSp~l~~l~~~~ 124 (220)
T cd01650 83 VLVFLDFEKAFDSVDHEFLLKAL--------------------------------------GVRQGDPLSPLLFNLALDD 124 (220)
T ss_pred EEEEEEHHhhcCcCCHHHHHHHh--------------------------------------CCccCCcccHHHHHHHHHH
Confidence 34789999999999999999988 9999999999999999999
Q ss_pred HHHHHHh
Q psy17384 241 VIREWRI 247 (295)
Q Consensus 241 l~~~~~~ 247 (295)
+.+.+..
T Consensus 125 l~~~~~~ 131 (220)
T cd01650 125 LLRLLNK 131 (220)
T ss_pred HHHHHHh
Confidence 9988864
No 28
>KOG1005|consensus
Probab=96.96 E-value=0.00088 Score=64.81 Aligned_cols=123 Identities=20% Similarity=0.333 Sum_probs=80.2
Q ss_pred HhhhhhhhhHHHHHhhcccccch-hhHHhHHhHHHHHhcccChHHHHHHHHHh---------------CC----------
Q psy17384 135 LFSKAMGLDLVCKIWDLVMRDGE-VFIFRAALDFKKAYDSIDRETLFNILEEY---------------GA---------- 188 (295)
Q Consensus 135 lf~~~l~~~~~~riwD~~~~~g~-~~l~~~~l~i~kafd~v~~~~l~~~L~~~---------------g~---------- 188 (295)
+++.++..+.+.+-||.+...-. +-++.+.+|+.++||+++++.+...+++. ++
T Consensus 493 lg~si~~~d~~~~~~~~~k~r~~~~~LYfvk~DV~~cfDtIpqd~l~~II~~~l~~~r~~~~~~~~~~~vr~~f~s~~~~ 572 (888)
T KOG1005|consen 493 LGNSILIHDDIYRKLDFLKKRSRNQKLYFVKADVSKCFDTIPQDELISIIRDRLFVQRKDAYTVAGKGRVRGNFVSLIFC 572 (888)
T ss_pred CccceechHHHHHHHHHHHHHhhcCceEEEEEEhhhhhccCchHHHHHHHHHHHHHHHHHHHHhhcccccccceeeeeee
Confidence 44556778889999998876532 34677899999999999999999998321 00
Q ss_pred ---------------------------------CchhHHHHHHhhcccceeEEEcCCcCCceeccCCccCCCCCchHhHH
Q psy17384 189 ---------------------------------DAKTVAIIKESLQATKSKIKFMGDISNPFEIKTGVRQGDGLSPLLFN 235 (295)
Q Consensus 189 ---------------------------------~~~~~~~I~~~l~~~~~~v~~~~~~s~~~~~~~G~~Qg~~lsp~lF~ 235 (295)
..++..||...+.... ++++| .....+.|+|||++||.+|..
T Consensus 573 ~~d~~~n~~~~~~~~me~~~~lvie~~~~~~~Sss~l~~vi~~~l~~~~--vki~~---k~yvq~~GIpQGs~LSslLc~ 647 (888)
T KOG1005|consen 573 SADVEPNAHVVNALKMETSDVLVIENVSREMLSSSDLFSVIRNMLSTNY--VKIGG---KSYVQKKGIPQGSILSSLLCH 647 (888)
T ss_pred ccccchhHHHHHHhccCCCCeEEEEecceeecchhhHHHHHHHHHhhhe--EEECC---eEEEEecCccCCCchhHHHHH
Confidence 0112222222222221 22222 234568999999999999999
Q ss_pred HHHHHHHHHHHh-hhhcccccccCCCCC
Q psy17384 236 CVLEKVIREWRI-ISKEGSKFLTKLPDN 262 (295)
Q Consensus 236 ~~~~~l~~~~~~-~~~~~~~~~~~~~~~ 262 (295)
+|.+++-+..-. ...+|...+.++-||
T Consensus 648 lyy~dle~~y~~~~~~~g~~vLlR~vDD 675 (888)
T KOG1005|consen 648 LYYGDLEDKYFSFEKEDGSIVLLRYVDD 675 (888)
T ss_pred HHHHhHHHHHhhcccCCCcEEEEEeecc
Confidence 999999977544 344453344554444
No 29
>KOG1648|consensus
Probab=96.64 E-value=4.2e-05 Score=69.33 Aligned_cols=140 Identities=16% Similarity=0.315 Sum_probs=93.2
Q ss_pred hHHHHHHhhhhcCCCCcCCCCCCccHHHHHHHHHHHHhhcCCCccccCchHHHHHHHHhcCCHHHHHHHHHHHhhccchh
Q psy17384 6 TITQIRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLNKSVFY 85 (295)
Q Consensus 6 ~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~ 85 (295)
....|++|+.|...+..+|.++.. .+. +++...|...+-+-||.|||.++.++++.-++||..+-.|+.-+|-...
T Consensus 606 ~~~~~~kd~e~~~~~~~~fs~~~~-les-~~~~~~~~~~~l~~~~~~~~~dl~~p~~~~~ed~~~~~e~~s~~~~~q~-- 681 (813)
T KOG1648|consen 606 NLHRIDKDVERCDRNLMFFSNKDN-LES-RRVMYTYVRRNLEEGYTQGMCDLLAPLLVTFEDEALTLECFSLLMLRQR-- 681 (813)
T ss_pred heeeecchhhhCcchheeecCCcc-hhh-heeeeeeeccccccccccchhhccCCcCCChhhcccccCCCcHHHHHhc--
Confidence 356799999999999999988754 555 8888999999999999999999999999988877766556555443311
Q ss_pred hhcccChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCCChhhHHHHHHHHhhhhhhhhHHHHHhhcccccc
Q psy17384 86 VFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDG 156 (295)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~w~~~lf~~~l~~~~~~riwD~~~~~g 156 (295)
+-| +..+++...+-... +++..+|- -..+... .-..++|+..-|.+.++.+....+|...+...
T Consensus 682 ~~~-~q~~~~~~~l~~~r-~~~v~~~l-~s~id~~----qa~~f~~~~~~~~~~~s~~~~~~~~~~~~~~~ 745 (813)
T KOG1648|consen 682 GKF-PQRPGMSKCLLNLR-LIQVVDPL-ISDIDYA----QALSFRWFLLDFKRELSYECTYKVWEVIWAAQ 745 (813)
T ss_pred ccC-CCCCCccccccccc-chhhhcch-hcchhhh----hhcceeeeccCcccccCCCCcceeeEeecccc
Confidence 111 12223322221121 33333441 1112111 12337899999999999888888888877553
No 30
>KOG4768|consensus
Probab=96.28 E-value=0.01 Score=55.83 Aligned_cols=80 Identities=23% Similarity=0.260 Sum_probs=65.8
Q ss_pred HHhHHHHHhcccChHHHHHHHHHhCCCchhHHHHHHhhcccceeEEEcCCcCCceeccCCccCCCCCchHhHHHHHHHHH
Q psy17384 163 AALDFKKAYDSIDRETLFNILEEYGADAKTVAIIKESLQATKSKIKFMGDISNPFEIKTGVRQGDGLSPLLFNCVLEKVI 242 (295)
Q Consensus 163 ~~l~i~kafd~v~~~~l~~~L~~~g~~~~~~~~I~~~l~~~~~~v~~~~~~s~~~~~~~G~~Qg~~lsp~lF~~~~~~l~ 242 (295)
+..|+.+.||.+.|+.|+..|++.--+.-+++++...++....... + .....--|+|||++.||+|.|+++..|-
T Consensus 363 ie~DLkkcfdtIphd~LI~eL~~rIkdk~fidL~~kll~AGy~ten--~---ry~~~~lGtpqgsvvspil~nifL~~LD 437 (796)
T KOG4768|consen 363 IEVDLKKCFDTIPHDELIIELQKRIKDKGFIDLNYKLLRAGYTTEN--A---RYHVEFLGTPQGSVVSPILCNIFLRELD 437 (796)
T ss_pred EechHHHHhccccHHHHHHHHHHHHhhhhHHHHHHHHHhcCccccc--c---ceecccccccccccCCchhHHHHHHHHH
Confidence 5799999999999999999999988888889999988887664322 1 1122456999999999999999999998
Q ss_pred HHHHh
Q psy17384 243 REWRI 247 (295)
Q Consensus 243 ~~~~~ 247 (295)
+-++.
T Consensus 438 k~Len 442 (796)
T KOG4768|consen 438 KRLEN 442 (796)
T ss_pred HHHHH
Confidence 77665
No 31
>cd00304 RT_like RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. These elements can be divided into two major groups. One group contains retroviruses and DNA viruses whose propagation involves an RNA intermediate. They are grouped together with transposable elements containing long terminal repeats (LTRs). The other group, also called poly(A)-type retrotransposons, contain fungal mitochondrial introns and transposable elements that lack LTRs.
Probab=95.09 E-value=0.026 Score=40.62 Aligned_cols=25 Identities=36% Similarity=0.349 Sum_probs=23.6
Q ss_pred ccCCCCCchHhHHHHHHHHHHHHHh
Q psy17384 223 VRQGDGLSPLLFNCVLEKVIREWRI 247 (295)
Q Consensus 223 ~~Qg~~lsp~lF~~~~~~l~~~~~~ 247 (295)
+|||.++||.+|++++..+.+.+..
T Consensus 12 lPqG~~~Sp~l~~~~~~~l~~~~~~ 36 (98)
T cd00304 12 LPQGSPLSPALANLYMEKLEAPILK 36 (98)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988765
No 32
>PF14961 BROMI: Broad-minded protein
Probab=93.82 E-value=0.43 Score=48.79 Aligned_cols=141 Identities=13% Similarity=0.192 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHhhcCCCccccCchHHHHHH-HHhcCCHHHHHHHHHHHhhccc------hhhhc---ccC---hHhH---
Q psy17384 32 NTLHYMLASYVSYNTRISYVQGMSYICALF-ILNISTAYEAFVCFCNFLNKSV------FYVFY---SLN---IRMM--- 95 (295)
Q Consensus 32 ~~L~~IL~~~~~~~p~igY~QGm~~i~~~l-l~~~~~e~~af~~~~~l~~~~~------~~~~~---~~~---~~~~--- 95 (295)
++-.+|+..|..+.+.-+| .|..-.++.+ ++...|.+.+...+.++..... ++-.. .+. ..++
T Consensus 1084 ~s~l~~~~~~~~~~~~~~y-~g~DWFvstvfli~~Gd~e~~~~fL~~fS~ll~SaflW~pRlh~s~~l~~~~~~s~i~p~ 1162 (1296)
T PF14961_consen 1084 KSSLHILFEFIHFCLQGSY-PGHDWFVSTVFLIMLGDKERSLQFLQRFSRLLTSAFLWPPRLHASIHLPVDTAESGIHPV 1162 (1296)
T ss_pred cchhHHHhhhhcccCCCCC-CCchhHHHHHHHHHcCChhHhHHHHHHHHHHHHHhHhccccccccccCCchhhhcCCCch
Confidence 4445566666666666555 4777555554 4444667777666555443211 01001 111 0111
Q ss_pred -HHHHHHHHHHHHhhChhhhhHHHhcCCCChhhHHHHHHHHhhhhhhhhHHHHHhhcccccchhhHHhHHhHHHHHhcc
Q psy17384 96 -QAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAALDFKKAYDS 173 (295)
Q Consensus 96 -~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~w~~~lf~~~l~~~~~~riwD~~~~~g~~~l~~~~l~i~kafd~ 173 (295)
-.....++.+++...|.++.-|...|+.|...+.+|+.-+|=..+++..+..-.-..+..|..+-++++++++|..+.
T Consensus 1163 ~~~~~~~vE~ll~~E~P~V~saf~~sg~tpsqi~~rW~~QcFWnyldW~eI~~y~~~cil~G~dyqvY~~VailkHlq~ 1241 (1296)
T PF14961_consen 1163 YFCSCHYVEMLLKAELPLVFSAFRMSGFTPSQICQRWLSQCFWNYLDWPEICHYIAICILYGPDYQVYICVAILKHLQP 1241 (1296)
T ss_pred hhhHHHHHHHHHHhhccHHHHHHHHcCCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhcCccceeehhHHHHHHhhH
Confidence 234578999999999999999999999999999999999999999999888888888888999888899999999877
No 33
>COG3344 Retron-type reverse transcriptase [DNA replication, recombination, and repair]
Probab=80.17 E-value=5.4 Score=35.61 Aligned_cols=81 Identities=27% Similarity=0.283 Sum_probs=57.9
Q ss_pred hHHhHHHHHhcccChHHHHHHHHHhCCCchhHHHHHHhhcccceeEEEcCCcCCceeccCCccCCCCCchHhHHHHHHHH
Q psy17384 162 RAALDFKKAYDSIDRETLFNILEEYGADAKTVAIIKESLQATKSKIKFMGDISNPFEIKTGVRQGDGLSPLLFNCVLEKV 241 (295)
Q Consensus 162 ~~~l~i~kafd~v~~~~l~~~L~~~g~~~~~~~~I~~~l~~~~~~v~~~~~~s~~~~~~~G~~Qg~~lsp~lF~~~~~~l 241 (295)
.+-.++.+.|++++|..++..+...--+.....++...+-...... ....-....|++||.++||++-|+.+...
T Consensus 183 ~~~~di~~~fd~~~h~~ll~~~~~~i~~~~~~~~~~r~~~~~~~~~-----~~~~~~~~~~~~q~~~vs~~l~n~~l~~~ 257 (328)
T COG3344 183 VYDRDIKKCFDSINHKLLLYALDVTISDKLVLLLLGRILIAGYKTK-----FNLKKSKEKGTPQGGLVSPILVNIKLSKL 257 (328)
T ss_pred EEeehHHHHhcccCHHHHHHHhHhhhcchHHHHHHHHHHHccccee-----ecccccccccCCCCCccCchhhhhhhhhh
Confidence 3568899999999999999999887666655544433333322211 11112267899999999999999998888
Q ss_pred HHHHHh
Q psy17384 242 IREWRI 247 (295)
Q Consensus 242 ~~~~~~ 247 (295)
.+.++.
T Consensus 258 ~~~~~~ 263 (328)
T COG3344 258 DNELRN 263 (328)
T ss_pred hHHHHH
Confidence 877765
No 34
>KOG1102|consensus
Probab=76.84 E-value=0.38 Score=44.26 Aligned_cols=159 Identities=19% Similarity=0.184 Sum_probs=91.9
Q ss_pred HHHHhhhhcCCCCcCCCCCCccHHHHHHHHHHHHhhcCCCccccCchHHHHHHHHhcCCHHHHHHHHHHHhhccchhhhc
Q psy17384 9 QIRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLNKSVFYVFY 88 (295)
Q Consensus 9 ~I~~Dv~Rt~~~~~~f~~~~~~~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~~ 88 (295)
+|+.|+.+|+. ++...+..++. |.+|.-+++++||| +..+.+ ...++.
T Consensus 2 ~~~~~~~~~~~---~~~~~~~~~~~----l~~~~~~~~~~~~~--~~~~~~-----------------------~~~~~~ 49 (397)
T KOG1102|consen 2 EIDSPVRLTFR---LRPRYGQKQNN----LAAYEPYNPEVGYC--VLHITS-----------------------KSDGFQ 49 (397)
T ss_pred CCCcccccccc---CCCCccccccc----ccCCCccccccccc--hhhhhh-----------------------cccccc
Confidence 35667887876 33322222222 88899999999999 544443 112333
Q ss_pred ccChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCCChhhHHHHHHHHhhhhhhhhHHHHHhhcccccchhhHHhHHhHHH
Q psy17384 89 SLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAALDFK 168 (295)
Q Consensus 89 ~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~w~~~lf~~~l~~~~~~riwD~~~~~g~~~l~~~~l~i~ 168 (295)
..+...........+.......+.-..|+...+ ........|....+..........++||.+..+|........-+..
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (397)
T KOG1102|consen 50 SSNERKLTELRDSPESIPDLSQSKRPGHVDSSE-PTNELYPKSDERIFKDKPLLSLTLDLWDVKLLEGEQELTALSSSWL 128 (397)
T ss_pred cCCcccccccccCcccccccccccccccccccc-cccccccccccccccccccccccchhHHHHhhhhHHHHHHHHHHhh
Confidence 333333333333334444444555666666666 5566677777777878778888889999999999887766555555
Q ss_pred HHhcccChHHHHHHHHHhCCCchhHHHHHHhhcc
Q psy17384 169 KAYDSIDRETLFNILEEYGADAKTVAIIKESLQA 202 (295)
Q Consensus 169 kafd~v~~~~l~~~L~~~g~~~~~~~~I~~~l~~ 202 (295)
+... .+..-+......|++..+...+...+.+
T Consensus 129 ~~~~--~~~~~l~~~~~~gip~~~r~~~W~l~~~ 160 (397)
T KOG1102|consen 129 KVIL--RRPLKLSRRVLVGIPDELRGLVWQLLLY 160 (397)
T ss_pred hhcc--ccHHHHHHHhhccccHHHHHHHHHHhcc
Confidence 5431 1222223333445555544444444333
No 35
>KOG2224|consensus
Probab=70.98 E-value=1.6 Score=39.79 Aligned_cols=28 Identities=14% Similarity=0.439 Sum_probs=23.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhccc
Q psy17384 56 YICALFILNISTAYEAFVCFCNFLNKSV 83 (295)
Q Consensus 56 ~i~~~ll~~~~~e~~af~~~~~l~~~~~ 83 (295)
++++++|.-.-||.++||||+.+|.+..
T Consensus 574 dlvapilaevldesdtfwcfvglmqna~ 601 (781)
T KOG2224|consen 574 DLVAPILAEVLDESDTFWCFVGLMQNAF 601 (781)
T ss_pred hhhhhHHHhhhccccchhhhhhhhcceE
Confidence 7888888766669999999999998643
No 36
>PF10815 ComZ: ComZ; InterPro: IPR024558 ComZ, which contains a leucine zipper motif, negatively regulates transcription of the ComG operon [].
Probab=66.99 E-value=16 Score=22.98 Aligned_cols=40 Identities=18% Similarity=0.339 Sum_probs=34.6
Q ss_pred HHHHHHhhChhhhhHHHhcCCCChhhHHHHHHHHhhhhhh
Q psy17384 102 YNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMG 141 (295)
Q Consensus 102 ~~~ll~~~~P~L~~hl~~~~i~~~~~~~~w~~~lf~~~l~ 141 (295)
|..+-.++.|+--+.+++.|+..+.-..+-++++|.++.+
T Consensus 6 FmqIaMK~lPEak~~L~k~GIeLsme~~qP~m~L~~~VM~ 45 (56)
T PF10815_consen 6 FMQIAMKYLPEAKEELDKKGIELSMEMLQPLMQLLTKVMN 45 (56)
T ss_pred HHHHHHHHhHHHHHHHHHcCccCCHHHHHHHHHHHHHHHH
Confidence 5566778899988999999999999899999999988764
No 37
>PF08109 Antimicrobial14: Lactocin 705 family; InterPro: IPR012517 This family consists of lactocin 705 which is a bacteriocin produced by Lactobacillus casei CRL 705. Lactocin 705 is a class IIb bacteriocin, whose activity depends upon the complementation of two peptides (705-alpha and 705-beta) of 33 amino acid residues each. Lactocin 705 is active against several Gram-positive bacteria, including food-borne pathogens and is a good candidate to be used for biopreservation of fermented meats [].
Probab=50.80 E-value=13 Score=19.69 Aligned_cols=15 Identities=20% Similarity=0.476 Sum_probs=10.7
Q ss_pred ccccCchHHHHHHHH
Q psy17384 49 SYVQGMSYICALFIL 63 (295)
Q Consensus 49 gY~QGm~~i~~~ll~ 63 (295)
||.||+.+..--.+.
T Consensus 4 gyiqgipdflkgylh 18 (31)
T PF08109_consen 4 GYIQGIPDFLKGYLH 18 (31)
T ss_pred ccccccHHHHHHHHh
Confidence 899999876655443
No 38
>PF13041 PPR_2: PPR repeat family
Probab=33.18 E-value=58 Score=19.60 Aligned_cols=25 Identities=24% Similarity=0.495 Sum_probs=17.3
Q ss_pred hhhhHHHhcCCCChhhHHHHHHHHh
Q psy17384 112 KLHRHFHSCGLTPDLYLLDWIYTLF 136 (295)
Q Consensus 112 ~L~~hl~~~~i~~~~~~~~w~~~lf 136 (295)
++++.+.+.|+.|+.++..-++..+
T Consensus 24 ~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 24 KLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4556677788888887776666544
No 39
>cd03714 RT_DIRS1 RT_DIRS1: Reverse transcriptases (RTs) occurring in the DIRS1 group of retransposons. Members of the subfamily include the Dictyostelium DIRS-1, Volvox carteri kangaroo, and Panagrellus redivivus PAT elements. These elements differ from LTR and conventional non-LTR retrotransposons. They contain split direct repeat (SDR) termini, and have been proposed to integrate via double-stranded closed-circle DNA intermediates assisted by an encoded recombinase which is similar to gamma-site-specific integrase.
Probab=32.58 E-value=50 Score=24.33 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=22.1
Q ss_pred ccCCCCCchHhHHHHHHHHHHHHH
Q psy17384 223 VRQGDGLSPLLFNCVLEKVIREWR 246 (295)
Q Consensus 223 ~~Qg~~lsp~lF~~~~~~l~~~~~ 246 (295)
+|||...||..|.-+++.+.+.++
T Consensus 34 mp~Gl~~sp~~f~~~~~~i~~~~~ 57 (119)
T cd03714 34 LPFGLSLAPRVFTKVVEALLAPLR 57 (119)
T ss_pred cCCcccchHHHHHHHHHHHHHHhh
Confidence 889999999999999999988775
No 40
>PF14483 Cut8_M: Cut8 dimerisation domain; PDB: 3Q5W_A 3Q5X_A.
Probab=32.16 E-value=28 Score=20.35 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhhcCCCc
Q psy17384 31 YNTLHYMLASYVSYNTRIS 49 (295)
Q Consensus 31 ~~~L~~IL~~~~~~~p~ig 49 (295)
++.|+.+|...+..||+++
T Consensus 12 ~~qL~~lL~~l~~~HPei~ 30 (38)
T PF14483_consen 12 KDQLQSLLQSLCERHPEIQ 30 (38)
T ss_dssp HHHHHHHHHHHHHHSTHHH
T ss_pred HHHHHHHHHHHHHhChhHH
Confidence 7899999999999999976
No 41
>PF12854 PPR_1: PPR repeat
Probab=30.25 E-value=94 Score=17.16 Aligned_cols=32 Identities=22% Similarity=0.311 Sum_probs=24.6
Q ss_pred cCCCChhhHHHHHHHHhhhhhhhhHHHHHhhc
Q psy17384 120 CGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDL 151 (295)
Q Consensus 120 ~~i~~~~~~~~w~~~lf~~~l~~~~~~riwD~ 151 (295)
.|+.|+.+.+.-+...+.+.=.++.+.+++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 37788888888888888877777777777663
No 42
>cd01645 RT_Rtv RT_Rtv: Reverse transcriptases (RTs) from retroviruses (Rtvs). RTs catalyze the conversion of single-stranded RNA into double-stranded viral DNA for integration into host chromosomes. Proteins in this subfamily contain long terminal repeats (LTRs) and are multifunctional enzymes with RNA-directed DNA polymerase, DNA directed DNA polymerase, and ribonuclease hybrid (RNase H) activities. The viral RNA genome enters the cytoplasm as part of a nucleoprotein complex, and the process of reverse transcription generates in the cytoplasm forming a linear DNA duplex via an intricate series of steps. This duplex DNA is colinear with its RNA template, but contains terminal duplications known as LTRs that are not present in viral RNA. It has been proposed that two specialized template switches, known as strand-transfer reactions or "jumps", are required to generate the LTRs.
Probab=29.17 E-value=53 Score=27.21 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=24.1
Q ss_pred CCccCCCCCchHhHHHHHHHHHHHHHh
Q psy17384 221 TGVRQGDGLSPLLFNCVLEKVIREWRI 247 (295)
Q Consensus 221 ~G~~Qg~~lsp~lF~~~~~~l~~~~~~ 247 (295)
+.++||...||.+|+.+++.+...+..
T Consensus 127 ~~lP~Gl~~SP~~f~~~m~~~l~~~~~ 153 (213)
T cd01645 127 KVLPQGMKNSPTICQSFVAQALEPFRK 153 (213)
T ss_pred EEeCCCCcChHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999887764
No 43
>COG5460 Uncharacterized conserved protein [Function unknown]
Probab=21.61 E-value=67 Score=21.94 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=17.9
Q ss_pred cccCchHHHHHHHHhcCCHHHHHHH
Q psy17384 50 YVQGMSYICALFILNISTAYEAFVC 74 (295)
Q Consensus 50 Y~QGm~~i~~~ll~~~~~e~~af~~ 74 (295)
|.||+++-.+++..-+.+-++.-|.
T Consensus 51 YNQGi~da~a~i~ekl~d~te~l~~ 75 (82)
T COG5460 51 YNQGIKDARAVIEEKLADMTEELFA 75 (82)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999888766544444443
No 44
>COG2012 RPB5 DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Transcription]
Probab=21.52 E-value=62 Score=22.24 Aligned_cols=40 Identities=28% Similarity=0.479 Sum_probs=30.8
Q ss_pred cChHHHHHHHHHhCCCchhHHHHHHhhcccceeEEEcCCcCCceeccCCccCCCC
Q psy17384 174 IDRETLFNILEEYGADAKTVAIIKESLQATKSKIKFMGDISNPFEIKTGVRQGDG 228 (295)
Q Consensus 174 v~~~~l~~~L~~~g~~~~~~~~I~~~l~~~~~~v~~~~~~s~~~~~~~G~~Qg~~ 228 (295)
++.+...+.|+++++.++.+.||+ .+++..-.-|.++|+.
T Consensus 21 ls~eE~~~vLk~l~i~~~qLPkI~---------------~~DPva~~lgak~Gdv 60 (80)
T COG2012 21 LSEEEAKEVLKELGIEPEQLPKIK---------------ASDPVAKALGAKPGDV 60 (80)
T ss_pred cCHHHHHHHHHHhCCCHHHCCccc---------------ccChhHHHccCCCCcE
Confidence 678888999999999998888875 4555555667777773
Done!