Query psy17384
Match_columns 295
No_of_seqs 310 out of 2281
Neff 9.3
Searched_HMMs 29240
Date Fri Aug 16 21:06:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17384.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17384hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qq8_A TBC1 domain family memb 100.0 1.4E-40 4.8E-45 296.1 17.2 194 4-198 107-304 (334)
2 3hzj_A Rabgap1L, RAB GTPase-ac 100.0 2.3E-38 7.9E-43 279.4 16.5 179 5-184 68-251 (310)
3 3qye_A TBC1 domain family memb 100.0 1.2E-37 4.2E-42 277.3 18.6 181 5-186 102-288 (331)
4 1fkm_A Protein (GYP1P), ORF YO 100.0 1.1E-36 3.7E-41 276.5 14.8 183 4-189 84-361 (396)
5 2qfz_A TBC1 domain family memb 100.0 6.4E-37 2.2E-41 274.1 13.2 183 4-190 102-316 (345)
6 4hl4_A TBC1 domain family memb 100.0 2.8E-37 9.7E-42 270.1 10.3 191 4-197 80-280 (292)
7 3qwl_A TBC1 domain family memb 99.9 1.3E-22 4.4E-27 176.0 10.3 134 50-188 131-269 (294)
8 3kyl_A Telomerase reverse tran 98.6 7.9E-09 2.7E-13 93.3 0.6 81 161-246 246-329 (596)
9 1erd_A Pheromone ER-2; NMR {Eu 33.7 8.6 0.00029 20.8 -0.0 14 44-57 13-26 (40)
10 4g26_A Pentatricopeptide repea 29.7 97 0.0033 28.1 6.4 84 112-195 91-178 (501)
11 2qq8_A TBC1 domain family memb 21.7 78 0.0027 27.0 3.9 107 178-293 214-326 (334)
No 1
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-40 Score=296.14 Aligned_cols=194 Identities=43% Similarity=0.873 Sum_probs=177.9
Q ss_pred hhhHHHHHHhhhhcCCCCcCCCCCCccHHHHHHHHHHHHhhcCCCccccCchHHHHHHHHhcCCHHHHHHHHHHHhhccc
Q psy17384 4 DNTITQIRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLNKSV 83 (295)
Q Consensus 4 ~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~ 83 (295)
++..+||++||.||+|++++|+.++++++.|+|||.+|+.+||++||||||++|||+|+++++ |++|||||+++|++..
T Consensus 107 ~~~~~~I~~Dv~RT~p~~~~F~~~~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~~~-E~~aF~~~~~l~~~~~ 185 (334)
T 2qq8_A 107 EASLELIKLDISRTFPNLCIFQQGGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLD-TADAFIAFSNLLNKPC 185 (334)
T ss_dssp CCHHHHHHHHHHTSSGGGCSSSTTSTTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHSC-HHHHHHHHHHHHTSHH
T ss_pred hhHHHHHHHHHhhcCCCchhhcCCCchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhcCC-HHHHHHHHHHHHHhhh
Confidence 356799999999999999999987778999999999999999999999999999999999998 9999999999999877
Q ss_pred hhhhcccChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCCChhhHHHHHHHHhhhhhhhhHHHHHhhcccccchhhHHhH
Q psy17384 84 FYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRA 163 (295)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~w~~~lf~~~l~~~~~~riwD~~~~~g~~~l~~~ 163 (295)
+..+|.++.+++...+..++.+++..+|+|++||.+.|+.|..|+.+|++++|++++|++.+.||||.++.+|..+++++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~~~l~~v 265 (334)
T 2qq8_A 186 QMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRT 265 (334)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHhccCCChHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 77889888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHhcc----cChHHHHHHHHHhCCCchhHHHHHH
Q psy17384 164 ALDFKKAYDS----IDRETLFNILEEYGADAKTVAIIKE 198 (295)
Q Consensus 164 ~l~i~kafd~----v~~~~l~~~L~~~g~~~~~~~~I~~ 198 (295)
++++++.+++ .+.+.++..|++++-.-+.-..+..
T Consensus 266 alaiL~~~~~~Ll~~d~~~il~~L~~lp~~~d~~~l~~~ 304 (334)
T 2qq8_A 266 ALGILKLFEDILTKMDFIHMAQFLTRLPEDLPAEELFAS 304 (334)
T ss_dssp HHHHHHHTHHHHHTCCHHHHHHHHHSCCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhCCCcCCHHHHHHH
Confidence 9999999876 6888899999877654333344443
No 2
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.3e-38 Score=279.42 Aligned_cols=179 Identities=27% Similarity=0.480 Sum_probs=168.7
Q ss_pred hhHHHHHHhhhhcCCCCcCCCCC-CccHHHHHHHHHHHHhhcCCCccccCchHHHHHHHHhcCCHHHHHHHHHHHhhccc
Q psy17384 5 NTITQIRLDISRTFPHLCLFQNE-GPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLNKSV 83 (295)
Q Consensus 5 ~~~~~I~~Dv~Rt~~~~~~f~~~-~~~~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~ 83 (295)
+..+||++||.||+|++++|+.. +.+++.|+|||.+|+.++|++||||||++|||+|+++++ |++||||++++|++..
T Consensus 68 ~~~~~I~~Dv~Rt~p~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~iaa~lL~~~~-e~~aF~~l~~l~~~~~ 146 (310)
T 3hzj_A 68 AQESVITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHMP-EEQAFCVLVKIMYDYG 146 (310)
T ss_dssp TTHHHHHHHHTTSSTTSTTTSSTTSHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHSC-HHHHHHHHHHHHHTSC
T ss_pred CcHHHHHHHHHhhCCCchhhcCCCchhHHHHHHHHHHHHHHCCCCCccCCHHHHHHHHHHhCC-HHHHHHHHHHHHhccc
Confidence 56789999999999999999975 467999999999999999999999999999999999998 9999999999999877
Q ss_pred hhhhcccChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCCChhhHHHHHHHHhhhhhhhhHHHHHhhcccccchhhHHhH
Q psy17384 84 FYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRA 163 (295)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~w~~~lf~~~l~~~~~~riwD~~~~~g~~~l~~~ 163 (295)
..++|.++.+++...+..++.+++..+|+|++||.+.|+.|..|+.+|++++|++++|++.+.|+||.++.+|..+++++
T Consensus 147 ~~~~~~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~~~l~~v 226 (310)
T 3hzj_A 147 LRDLYRNNFEDLHCKFYQLERLMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNIIFHV 226 (310)
T ss_dssp GGGGTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCTTHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHHHHhChHHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCcHHHHHH
Confidence 78899988899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHhcc----cChHHHHHHHH
Q psy17384 164 ALDFKKAYDS----IDRETLFNILE 184 (295)
Q Consensus 164 ~l~i~kafd~----v~~~~l~~~L~ 184 (295)
++++++.+++ .+.+.++..++
T Consensus 227 ~lail~~~~~~Ll~~d~~~~l~~l~ 251 (310)
T 3hzj_A 227 ALALLKTSKEDLLQADFEGALKFFR 251 (310)
T ss_dssp HHHHHHHTHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999998876 68888888875
No 3
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=100.00 E-value=1.2e-37 Score=277.30 Aligned_cols=181 Identities=23% Similarity=0.432 Sum_probs=170.6
Q ss_pred hhHHHHHHhhhhcCCCCcCCCCC-CccHHHHHHHHHHHHhhcCCCccccCchHHHHHHHHhcCCHHHHHHHHHHHhhccc
Q psy17384 5 NTITQIRLDISRTFPHLCLFQNE-GPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLNKSV 83 (295)
Q Consensus 5 ~~~~~I~~Dv~Rt~~~~~~f~~~-~~~~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~ 83 (295)
...+||++||.||+|++++|+.. +.+++.|+|||.+|+.++|++||||||++|||+|+++++ |++|||||++++++..
T Consensus 102 ~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~i~a~ll~~~~-E~~aF~~l~~l~~~~~ 180 (331)
T 3qye_A 102 SQQHAILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMS-EEEAFKMLKFLMFDMG 180 (331)
T ss_dssp TTHHHHHHHHTTSSTTSTTTCSTTCHHHHHHHHHHHHHHHHCTTTSSCTTHHHHHHHHHTTSC-HHHHHHHHHHHHTTTC
T ss_pred CchhHHHHhhcccCCCchhhcCCCcccHHHHHHHHHHHHHHCCCccccccHHHHHHHHHHHhh-HHHHHHHHHHHHHhcC
Confidence 45789999999999999999975 578999999999999999999999999999999999998 9999999999999876
Q ss_pred hhhhcccChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCCChhhHHHHHHHHhhhhhhhhHHHHHhhcccccchhhHHhH
Q psy17384 84 FYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRA 163 (295)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~w~~~lf~~~l~~~~~~riwD~~~~~g~~~l~~~ 163 (295)
...+|.++..++...+..++.+++..+|+|++||.+.|+.|..|+.+|++++|++.+|++.+.|+||.++.+|..+++++
T Consensus 181 ~~~~~~~~~~~~~~~~~~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~v 260 (331)
T 3qye_A 181 LRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKV 260 (331)
T ss_dssp GGGGGSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHH
T ss_pred chhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHH
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHhcc----c-ChHHHHHHHHHh
Q psy17384 164 ALDFKKAYDS----I-DRETLFNILEEY 186 (295)
Q Consensus 164 ~l~i~kafd~----v-~~~~l~~~L~~~ 186 (295)
++++++.+++ . +.+.++..|++.
T Consensus 261 alaiL~~~~~~ll~~~~~~~il~~l~~~ 288 (331)
T 3qye_A 261 ALSLLGSHKPLILQHENLETIVDFIKST 288 (331)
T ss_dssp HHHHHHHTHHHHHTCCSHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHhh
Confidence 9999999876 2 788899998873
No 4
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=100.00 E-value=1.1e-36 Score=276.47 Aligned_cols=183 Identities=21% Similarity=0.321 Sum_probs=166.9
Q ss_pred hhhHHHHHHhhhhcCCCCcCCCCCCccHHHHHHHHHHHHhhcCCCccccCchHHHHHHHHhcC-----------------
Q psy17384 4 DNTITQIRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNIS----------------- 66 (295)
Q Consensus 4 ~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~----------------- 66 (295)
++..+||++||.||+|++++|+.+ .+++.|+|||.+|+.+||++||||||++|+++|+.++.
T Consensus 84 ~~~~~qI~~Dv~RT~p~~~~F~~~-~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~ 162 (396)
T 1fkm_A 84 IPTWHQIEIDIPRTNPHIPLYQFK-SVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDP 162 (396)
T ss_dssp HHHHHHHHHHGGGSSTTSGGGGSH-HHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCG
T ss_pred HHHHHHHHHHhhhhCCCcccccCc-hHHHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhccccccccccccch
Confidence 356789999999999999999875 46999999999999999999999999999999998641
Q ss_pred -C----------HHHHHHHHHHHhhccchhhhcccChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCCChhhHHHHHHHH
Q psy17384 67 -T----------AYEAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTL 135 (295)
Q Consensus 67 -~----------e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~w~~~l 135 (295)
+ |++|||||+++|++. ..+|.++.+++...+..++.+++..+|+|++||++.|+.|..|+.+|++++
T Consensus 163 ~~~l~~~~~~~~E~daF~~f~~lm~~~--~~~f~~~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~L 240 (396)
T 1fkm_A 163 STYMVDEQITDLEADTFWCLTKLLEQI--TDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCL 240 (396)
T ss_dssp GGTCCHHHHHHHHHHHHHHHHHHHGGG--GGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTT
T ss_pred hhccchhhhhhhHHHHHHHHHHHHHHH--HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 2 899999999999984 578888889999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHhhcccccc-----------------------------------------------------------
Q psy17384 136 FSKAMGLDLVCKIWDLVMRDG----------------------------------------------------------- 156 (295)
Q Consensus 136 f~~~l~~~~~~riwD~~~~~g----------------------------------------------------------- 156 (295)
|++++|++.+.||||.++.+|
T Consensus 241 F~~~~p~~~vlrlWD~~l~eg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (396)
T 1fkm_A 241 LMREFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMR 320 (396)
T ss_dssp TGGGSCHHHHHHHHHHHHHHHC----------------------------------------------------------
T ss_pred HHhhCCHHHHHHHHHHHHHCCCccccchhhhhcccccCCccccccccccccccccccccccccccccccccccccchhcc
Confidence 999999999999999999988
Q ss_pred ----hhhHHhHHhHHHHHhcc----cChHHHHHHHHHhCCC
Q psy17384 157 ----EVFIFRAALDFKKAYDS----IDRETLFNILEEYGAD 189 (295)
Q Consensus 157 ----~~~l~~~~l~i~kafd~----v~~~~l~~~L~~~g~~ 189 (295)
..++++++++++..+++ .|.+.++..|++++..
T Consensus 321 ~~~~~~~~~~v~~AlL~~~r~~Ll~~df~~~l~~L~~~p~~ 361 (396)
T 1fkm_A 321 QSSLNEFHVFVCAAFLIKWSDQLMEMDFQETITFLQNPPTK 361 (396)
T ss_dssp --CHHHHHHHHHHHHHHHTHHHHTTCCHHHHHHHHTSCSCT
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHhcCCCC
Confidence 25778899999999877 5889999999987664
No 5
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=100.00 E-value=6.4e-37 Score=274.07 Aligned_cols=183 Identities=17% Similarity=0.309 Sum_probs=164.9
Q ss_pred hhhHHHHHHhhhhcCCCCcCCCCCCccHHHHHHHHHHHHhhcCCCccccCchHHHHHHHHhcC-----------------
Q psy17384 4 DNTITQIRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNIS----------------- 66 (295)
Q Consensus 4 ~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~----------------- 66 (295)
.+..+||++||.||+|+ ++|++. .+++.|+|||.+|+.+||++||||||++||++++.++.
T Consensus 102 ~~~~~~I~~Dv~RT~p~-~~F~~~-~~~~~L~rIL~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~~~~~~~~~l 179 (345)
T 2qfz_A 102 QDTYRQIHIDIPRMSPE-ALILQP-KVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGV 179 (345)
T ss_dssp HHHHHHHHHHGGGCSCH-HHHTSH-HHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHGGGCC-----CCCCTTS
T ss_pred HHHHHHHHHhCcccCCc-cccCCc-hHHHHHHHHHHHHHHHCCCCCcccChHHHHHHHHHHHHhhhcccccccccchhhh
Confidence 35789999999999999 999875 35889999999999999999999999999999998653
Q ss_pred -------CHHHHHHHHHHHhhccchhhhcccChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCCChhhHHHHHHHHhhhh
Q psy17384 67 -------TAYEAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKA 139 (295)
Q Consensus 67 -------~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~w~~~lf~~~ 139 (295)
+|++|||||+++|++. ..+|..+.+++...+..++.+++..+|+|++||++.|+.|..|+.+|++++|+++
T Consensus 180 ~~~~~~~~E~daF~~f~~lm~~~--~~~y~~~~~~i~~~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~~lF~~~ 257 (345)
T 2qfz_A 180 PAEVLCNIEADTYWCMSKLLDGI--QDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMRE 257 (345)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTS--GGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHHTTTTTT
T ss_pred hhhhhhhHHHHHHHHHHHHHHcc--ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHccc
Confidence 2999999999999985 5788888899999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHhhcccccchh---hHHhHHhHHHHHhcc-----cChHHHHHHHHHhCCCc
Q psy17384 140 MGLDLVCKIWDLVMRDGEV---FIFRAALDFKKAYDS-----IDRETLFNILEEYGADA 190 (295)
Q Consensus 140 l~~~~~~riwD~~~~~g~~---~l~~~~l~i~kafd~-----v~~~~l~~~L~~~g~~~ 190 (295)
+|++.+.|+||.++.+|.. +++++++++++.+++ .+.+.++..|++++...
T Consensus 258 ~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~p~~~ 316 (345)
T 2qfz_A 258 VPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLPTAH 316 (345)
T ss_dssp SCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSCSCTT
T ss_pred CCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCCcC
Confidence 9999999999999999976 567889998887755 57888888888876653
No 6
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=100.00 E-value=2.8e-37 Score=270.09 Aligned_cols=191 Identities=15% Similarity=0.224 Sum_probs=167.5
Q ss_pred hhhHHHHHHhhhhcCCCCcCCCC---CCccHHHHHHHHHHHHhhcCCCccccCchHHHHHHHHhcCCHHHHHHHHHHHhh
Q psy17384 4 DNTITQIRLDISRTFPHLCLFQN---EGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEAFVCFCNFLN 80 (295)
Q Consensus 4 ~~~~~~I~~Dv~Rt~~~~~~f~~---~~~~~~~L~~IL~~~~~~~p~igY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~ 80 (295)
.+..+||++||.||+|+++.|.. .+.+++.|+|||.+|+.+||++|||||||+||++++++++ |++||||++++++
T Consensus 80 ~~~~~qI~~Dv~RT~~~~~~~~~~~~~~~~~~~L~~iL~ay~~~~p~vgY~QGm~~iaa~lLl~~~-e~~aF~~l~~l~~ 158 (292)
T 4hl4_A 80 SKDYQQVLLDVRRSLRRFPPGMPEEQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVVG-ERLATSLVEKLST 158 (292)
T ss_dssp CTTHHHHHHHHHTTGGGSCTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCTTHHHHHHHHHHHHC-HHHHHHHHHHHHH
T ss_pred chhHHHHHHhhhhhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCeeccHHHHHHHHHHHcC-HHHHHHHHHHHHH
Confidence 46789999999999999988854 2456789999999999999999999999999999999998 9999999999999
Q ss_pred ccchhhhcccChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCCChhhHHHHHHHHhhhhhh-hhHHHHHhhcccccchhh
Q psy17384 81 KSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMG-LDLVCKIWDLVMRDGEVF 159 (295)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~w~~~lf~~~l~-~~~~~riwD~~~~~g~~~ 159 (295)
+.. +++|.++..++...+..++.+++..+|+|++||++.++ +.+|+.+|++|+|++++| ++.+.|+||.++.+|..+
T Consensus 159 ~~l-~~~~~~~~~~~~~~~~~l~~ll~~~~P~L~~hL~~~~i-~~~~~~~W~ltlF~~~l~~~~~~~rlWD~~l~~g~~~ 236 (292)
T 4hl4_A 159 HHL-RDFMDPTMDNTKHILNYLMPIIDQVNPELHDFMQSAEV-GTIFALSWLITWFGHVLSDFRHVVRLYDFFLACHPLM 236 (292)
T ss_dssp TTT-TGGGCSSSCTTTGGGGGHHHHHHHHCHHHHHHHC-CCC-CSGGGHHHHHTTTTTTSCCHHHHHHHHHHHHHSCTTH
T ss_pred HHH-HHhcccchHHHHHHHHHHHHHHHHHCHHHHHHHHHcCC-CcchHHHHHHHHHhhhcCcHHHHHHHHHHHHHcCCcH
Confidence 754 57889888888888999999999999999999999999 469999999999999996 999999999999999999
Q ss_pred HHhHHhHHHHHhcc------cChHHHHHHHHHhCCCchhHHHHH
Q psy17384 160 IFRAALDFKKAYDS------IDRETLFNILEEYGADAKTVAIIK 197 (295)
Q Consensus 160 l~~~~l~i~kafd~------v~~~~l~~~L~~~g~~~~~~~~I~ 197 (295)
++++++++++..++ .+.+.+...|++++-+.+.-.++.
T Consensus 237 ~~~v~~ail~~~~~~Ll~~~~d~~~l~~~l~~lp~~~d~~~li~ 280 (292)
T 4hl4_A 237 PIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQDLPYETLIS 280 (292)
T ss_dssp HHHHHHHHHHHTHHHHHTSCCSTTHHHHHHHSCCSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCCCHHHHHH
Confidence 99999999998855 267777788887765444444443
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=99.88 E-value=1.3e-22 Score=175.97 Aligned_cols=134 Identities=13% Similarity=0.242 Sum_probs=120.9
Q ss_pred cccCchHHHHHHHHhcCCHHHHHHHHHHHhhccchhhhcccChHhHHHHHHHHHHHHHhhChhhhhHHHhcCCCChhhHH
Q psy17384 50 YVQGMSYICALFILNISTAYEAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLL 129 (295)
Q Consensus 50 Y~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~ 129 (295)
++|||..||++++..+.+|++|||||+++|++. .++|.++.++++.. ++.+++..+|+|++||++.|+.|.+++.
T Consensus 131 ~~~~~~~Iaa~ll~l~~~E~dAFW~f~~Lm~~l--~~~f~~~~~gl~~~---l~~LL~~~dP~L~~HL~~~~i~~~~~~~ 205 (294)
T 3qwl_A 131 DDEVFLAIAKAMEEMVEDSVDCYWITRRFVNQL--NTKYRDSLPQLPKA---FEQYLNLEDGRLLTHLRMCSAAPKLPYD 205 (294)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHH--HTTTTTTGGGHHHH---HHHHHHHHCHHHHHHHHHTTCGGGSCHH
T ss_pred chhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--HHhhCCChhHHHHH---HHHHHHHHHHHHHHHHHHCCCCchhHHH
Confidence 469999999999998888999999999999983 57888888888764 4899999999999999999999888888
Q ss_pred HHHHHHhhhhhhhhHHHHHhhcccccchhhHHhHHhHHHHHhcc----cCh-HHHHHHHHHhCC
Q psy17384 130 DWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAALDFKKAYDS----IDR-ETLFNILEEYGA 188 (295)
Q Consensus 130 ~w~~~lf~~~l~~~~~~riwD~~~~~g~~~l~~~~l~i~kafd~----v~~-~~l~~~L~~~g~ 188 (295)
+||+++|++++|++.++|+||.++.+|.++++++++++++.+++ .+. +.+++.|++++.
T Consensus 206 rWfl~lF~~~~p~~~vlRlWD~~~~~~~~~l~~valAiL~~~r~~Ll~~~~~~~il~~Lq~lp~ 269 (294)
T 3qwl_A 206 LWFKRCFAGCLPESSLQRVWDKVVSGSCKILVFVAVEILLTFKIKVMALNSAEKITKFLENIPQ 269 (294)
T ss_dssp HHHTSTTTTTSCHHHHHHHHHHHHTTCSTHHHHHHHHHHHHTHHHHHHCCSHHHHHHHHTTCCS
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCc
Confidence 99999999999999999999999999999999999999999877 455 788888887664
No 8
>3kyl_A Telomerase reverse transcriptase; reverse transcriptase; 2.70A {Tribolium castaneum} PDB: 3du5_A 3du6_A
Probab=98.57 E-value=7.9e-09 Score=93.31 Aligned_cols=81 Identities=19% Similarity=0.326 Sum_probs=66.6
Q ss_pred HhHHhHHHHHhcccChHHHHHHHHHhCC---CchhHHHHHHhhcccceeEEEcCCcCCceeccCCccCCCCCchHhHHHH
Q psy17384 161 FRAALDFKKAYDSIDRETLFNILEEYGA---DAKTVAIIKESLQATKSKIKFMGDISNPFEIKTGVRQGDGLSPLLFNCV 237 (295)
Q Consensus 161 ~~~~l~i~kafd~v~~~~l~~~L~~~g~---~~~~~~~I~~~l~~~~~~v~~~~~~s~~~~~~~G~~Qg~~lsp~lF~~~ 237 (295)
+.+-+||.+.||+++|+.|++.+...+. +.....||+..+...- +..+|. ....+.|+|||+++||+|-|+|
T Consensus 246 yVVDaDIkkFFDnINHdkLLk~L~~~i~~IlDk~Il~LIkk~Lka~L--V~igGk---~y~qekGTPQGGVISPLLANIY 320 (596)
T 3kyl_A 246 YGIKVDIRDAYGNVKIPVLCKLIQSIPTHLLDSEKKNFIVDHISNQF--VAFRRK---IYKWNHGLLQGDPLSGCLCELY 320 (596)
T ss_dssp EEEEEEESSTTTTCCHHHHHHHHTTSCTTTSCHHHHHHHHHHHHCEE--EESSSS---EEEECSSSCBTCTTHHHHHHHH
T ss_pred EEEeeEHHhhCCCCCHHHHHHHHHhhccccccHHHHHHHHHHHhhCe--EEECCE---EEecCCcccCCcchhHHHHHHH
Confidence 4467999999999999999999999875 5667788888777543 444443 3457899999999999999999
Q ss_pred HHHHHHHHH
Q psy17384 238 LEKVIREWR 246 (295)
Q Consensus 238 ~~~l~~~~~ 246 (295)
+..+-+.+.
T Consensus 321 LheLDkel~ 329 (596)
T 3kyl_A 321 MAFMDRLYF 329 (596)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHHH
Confidence 999998874
No 9
>1erd_A Pheromone ER-2; NMR {Euplotes raikovi} SCOP: a.10.1.1
Probab=33.65 E-value=8.6 Score=20.76 Aligned_cols=14 Identities=36% Similarity=0.513 Sum_probs=9.3
Q ss_pred hcCCCccccCchHH
Q psy17384 44 YNTRISYVQGMSYI 57 (295)
Q Consensus 44 ~~p~igY~QGm~~i 57 (295)
.+.-.|||||=-+.
T Consensus 13 ehtmcgycqgplym 26 (40)
T 1erd_A 13 EHTMCGYCQGPLYM 26 (40)
T ss_dssp CGGGGGGSCHHHHH
T ss_pred cccccccccCCeeE
Confidence 45557999995443
No 10
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=29.66 E-value=97 Score=28.06 Aligned_cols=84 Identities=6% Similarity=-0.106 Sum_probs=0.0
Q ss_pred hhhhHHHhcCCCChhhHHHHHHHHhhhhhhhhHHHHHhhcccccchhhHHhHHhHHHHHhcc----cChHHHHHHHHHhC
Q psy17384 112 KLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAALDFKKAYDS----IDRETLFNILEEYG 187 (295)
Q Consensus 112 ~L~~hl~~~~i~~~~~~~~w~~~lf~~~l~~~~~~riwD~~~~~g~~~l~~~~l~i~kafd~----v~~~~l~~~L~~~g 187 (295)
++++.+.+.|+.|+..++.-++..+.+.=..+.+..+++.....|-..-....-.++.++-+ -.-..++..|.+.|
T Consensus 91 ~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G 170 (501)
T 4g26_A 91 DIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE 170 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcC
Q ss_pred CCchhHHH
Q psy17384 188 ADAKTVAI 195 (295)
Q Consensus 188 ~~~~~~~~ 195 (295)
+.++...+
T Consensus 171 ~~Pd~~ty 178 (501)
T 4g26_A 171 VVPEEPEL 178 (501)
T ss_dssp CCCCHHHH
T ss_pred CCCCHHHH
No 11
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=21.74 E-value=78 Score=26.97 Aligned_cols=107 Identities=21% Similarity=0.324 Sum_probs=62.7
Q ss_pred HHHHHHHHhCCCch--hHHHHHHhhcccceeEEEcCCcCCceeccCCccCCCCCchHhHHHHHHHHHH----HHHhhhhc
Q psy17384 178 TLFNILEEYGADAK--TVAIIKESLQATKSKIKFMGDISNPFEIKTGVRQGDGLSPLLFNCVLEKVIR----EWRIISKE 251 (295)
Q Consensus 178 ~l~~~L~~~g~~~~--~~~~I~~~l~~~~~~v~~~~~~s~~~~~~~G~~Qg~~lsp~lF~~~~~~l~~----~~~~~~~~ 251 (295)
.+.+.|++.|+.+. ..+|+..++...-. ...--..=+.+ ...| ..++|-+++.-+.. .++....+
T Consensus 214 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp-~~~~lriWD~~-l~eg-------~~~l~~valaiL~~~~~~Ll~~d~~~ 284 (334)
T 2qq8_A 214 KLFAHFKKNNLTPDIYLIDWIFTLYSKSLP-LDLACRIWDVF-CRDG-------EEFLFRTALGILKLFEDILTKMDFIH 284 (334)
T ss_dssp HHHHHHHHTTCCGGGTHHHHHHTTTTTTSC-HHHHHHHHHHH-HHHC-------HHHHHHHHHHHHHHTHHHHHTCCHHH
T ss_pred HHHHHHHHcCCCccchHHHHHHHHhcccCC-HHHHHHHHHHH-HHcC-------CHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 67788888888754 45777766654311 00000000000 0112 24555555443331 12223334
Q ss_pred ccccccCCCCCCCHHHHHHHHhhhhhhhhhhhHHHHHHhhhc
Q psy17384 252 GSKFLTKLPDNMDADKLFKSIAQMSVSIYRKSYETILEHHKS 293 (295)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (295)
-..++.++|..++.+.+++......+....++++++++..++
T Consensus 285 il~~L~~lp~~~d~~~l~~~a~~l~~~~~~k~~~~~~~~~~~ 326 (334)
T 2qq8_A 285 MAQFLTRLPEDLPAEELFASIATIQMQSRNKKWAQVLTALQK 326 (334)
T ss_dssp HHHHHHSCCTTCCHHHHHHHHHHCCCEETTEEHHHHHHHHHC
T ss_pred HHHHHHhCCCcCCHHHHHHHHHHccCcHHHhhHHHHHHHHHH
Confidence 457899999999999999999988887777788887776543
Done!