RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17384
(295 letters)
>2qq8_A TBC1 domain family member 14; structural genomics consortium,
RAB-GAP, SGC, GTPase activation, hydrolase activator;
2.00A {Homo sapiens}
Length = 334
Score = 174 bits (442), Expect = 1e-52
Identities = 82/160 (51%), Positives = 113/160 (70%), Gaps = 1/160 (0%)
Query: 6 TITQIRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNI 65
++ I+LDISRTFP+LC+FQ GPY++ LH +L +Y Y + YVQGMS+I A+ ILN+
Sbjct: 109 SLELIKLDISRTFPNLCIFQQGGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNL 168
Query: 66 STAYEAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPD 125
TA +AF+ F N LNK F+ ++ +M Y+A + F+ NLPKL HF LTPD
Sbjct: 169 DTA-DAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPD 227
Query: 126 LYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAAL 165
+YL+DWI+TL+SK++ LDL C+IWD+ RDGE F+FR AL
Sbjct: 228 IYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTAL 267
Score = 32.9 bits (75), Expect = 0.097
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 254 KFLTKLPDNMDADKLFKSIAQMSVSIYRKSYETILE 289
+FLT+LP+++ A++LF SIA + + K + +L
Sbjct: 287 QFLTRLPEDLPAEELFASIATIQMQSRNKKWAQVLT 322
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics
consortium, SGC, alternative splicing, GTPase
activation, phosphoprotein; 2.30A {Homo sapiens}
Length = 310
Score = 135 bits (343), Expect = 3e-38
Identities = 46/158 (29%), Positives = 70/158 (44%), Gaps = 2/158 (1%)
Query: 9 QIRLDISRTFPHLCLFQNE-GPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNIST 67
I DI RTFP F++ G +L+ + +Y Y+ I Y QG S++ A+ +L++
Sbjct: 72 VITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHMPE 131
Query: 68 AYEAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLY 127
+AF + Y N + + L + LP LH HF L +Y
Sbjct: 132 E-QAFCVLVKIMYDYGLRDLYRNNFEDLHCKFYQLERLMQEQLPDLHSHFSDLNLEAHMY 190
Query: 128 LLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAAL 165
W TLF+ L +V I DL++ +G IF AL
Sbjct: 191 ASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNIIFHVAL 228
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase
activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Length = 331
Score = 114 bits (288), Expect = 5e-30
Identities = 46/207 (22%), Positives = 86/207 (41%), Gaps = 7/207 (3%)
Query: 9 QIRLDISRTFPHLCLFQNE-GPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNIST 67
I +D+ RTFP F + G +L+ +L +Y + + Y QG+S++ + +L++S
Sbjct: 106 AILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMSE 165
Query: 68 AYEAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLY 127
EAF + Y ++ ++Q + L L+ H + P LY
Sbjct: 166 E-EAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLY 224
Query: 128 LLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAALD-FKKAYDSI----DRETLFNI 182
W T+F+ L V +++D++ G IF+ AL I + ET+ +
Sbjct: 225 AAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDF 284
Query: 183 LEEYGADAKTVAIIKESLQATKSKIKF 209
++ + V + K Q + I
Sbjct: 285 IKSTLPNLGLVQMEKTINQVFEMDIAK 311
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular
trafficking, endocytosis, hydrolase, GTPase activation;
1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1
PDB: 2g77_A*
Length = 396
Score = 96.6 bits (240), Expect = 6e-23
Identities = 35/185 (18%), Positives = 62/185 (33%), Gaps = 31/185 (16%)
Query: 5 NTITQIRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILN 64
T QI +DI RT PH+ L+Q + N+L +L + + YVQG++ + F
Sbjct: 85 PTWHQIEIDIPRTNPHIPLYQFK-SVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFET 143
Query: 65 ISTAY----------------------------EAFVCFCNFLNKSVFYVFYSLNIRMMQ 96
T Y + F C L + Y +
Sbjct: 144 FLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITD--NYIHGQPGIL 201
Query: 97 AYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDG 156
+ L K L+ HF + + + W+ L + + V ++WD + +
Sbjct: 202 RQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSET 261
Query: 157 EVFIF 161
+
Sbjct: 262 SQEVT 266
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator,
structural genomics, structural genomics consortium,
SGC, hydrolase activator; 2.10A {Homo sapiens} PDB:
3dzx_A
Length = 345
Score = 95.0 bits (236), Expect = 1e-22
Identities = 29/178 (16%), Positives = 55/178 (30%), Gaps = 28/178 (15%)
Query: 6 TITQIRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNI 65
T QI +DI R P + Q +L + + YVQG++ + F +
Sbjct: 104 TYRQIHIDIPRMSPEALILQP--KVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVF 161
Query: 66 STAY------------------------EAFVCFCNFLNKSVFYVFYSLNIRMMQAYYAT 101
Y + + C L+ Y+ +Q
Sbjct: 162 ICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSKLLDGIQDN--YTFAQPGIQMKVKM 219
Query: 102 YNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVF 159
+L ++HRH + + W+ L + + L ++WD + + F
Sbjct: 220 LEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGF 277
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural
genomics consortium, TBC D SGC, hydrolase activator;
1.90A {Homo sapiens}
Length = 294
Score = 78.5 bits (193), Expect = 5e-17
Identities = 18/160 (11%), Positives = 43/160 (26%), Gaps = 10/160 (6%)
Query: 6 TITQIRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNI 65
+ +R T + L + + + I +
Sbjct: 92 ALKVVRFVSDATPQAEVYLRMYQLESGKLPRSPSFPLEP-----DDEVFLAIAKAMEEMV 146
Query: 66 STAYEAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPD 125
+ + + F+N+ Y ++ + + +L H C P
Sbjct: 147 EDSVDCYWITRRFVNQ--LNTKYRDSLPQLPKAF---EQYLNLEDGRLLTHLRMCSAAPK 201
Query: 126 LYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAAL 165
L W F+ + + ++WD V+ + A+
Sbjct: 202 LPYDLWFKRCFAGCLPESSLQRVWDKVVSGSCKILVFVAV 241
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.8 bits (121), Expect = 3e-07
Identities = 27/158 (17%), Positives = 53/158 (33%), Gaps = 53/158 (33%)
Query: 137 SKAMGLDL-----VCK-IWDLVMRDGEVFIFRAALDFKKAYDSIDRETL-FNILEEYGAD 189
+ MG+DL + +W+ RA D+ ++T F+IL+
Sbjct: 1628 EQGMGMDLYKTSKAAQDVWN-----------RA--------DNHFKDTYGFSILD----- 1663
Query: 190 AKTVAIIKESLQATKSKIKFMGDISNPFEIKTGVRQGDGLSPLLFNCVLEKVIREWRIIS 249
I+ I F G + G R + S ++F +++ ++ +I
Sbjct: 1664 -----IVIN--NPVNLTIHFGG--------EKGKRIRENYSAMIFETIVDGKLKTEKIF- 1707
Query: 250 KEGSKFLTKLPDNMDADKLFK-SIAQ-----MSVSIYR 281
KE ++ T + L Q M + +
Sbjct: 1708 KEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFE 1745
Score = 38.9 bits (90), Expect = 0.002
Identities = 48/303 (15%), Positives = 86/303 (28%), Gaps = 110/303 (36%)
Query: 16 RTFPHLCLFQNEGPYYNTLHYMLASYVSYN-TRISYVQGM--SYICALFILN--ISTAYE 70
F + L N+ +H + A + N T + + + +YI A +
Sbjct: 89 TEFENCYLEGND------IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN 142
Query: 71 -AFVCFCNFLNKSVFYVF--------YSLNIRMMQAYYATYN----DLFKY---NLPKLH 114
A N + +F Y ++ Y TY+ DL K+ L +L
Sbjct: 143 SALFRAVGEGNAQLVAIFGGQGNTDDY---FEELRDLYQTYHVLVGDLIKFSAETLSELI 199
Query: 115 RH------FHSCGL-----------TPDLYLLDWI--------------YTLFSKAMGLD 143
R + GL TPD L I Y + +K +G
Sbjct: 200 RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFT 259
Query: 144 -----------LVCKIWDLVMRDGEVFIFRAALDFKKAYDSIDR--ETLFNILEEYGADA 190
LV ++ + S+ + LF I G
Sbjct: 260 PGELRSYLKGATGH-SQGLVT----AVAIAETDSWESFFVSVRKAITVLFFI----GV-- 308
Query: 191 KTVAIIKESLQATKSKIKFMGDISNPFEI-KTGVRQGDGL-SPLLFNCV-------LEKV 241
+A + S P I + + +G+ SP+L + ++
Sbjct: 309 -------RCYEAY-------PNTSLPPSILEDSLENNEGVPSPML--SISNLTQEQVQDY 352
Query: 242 IRE 244
+ +
Sbjct: 353 VNK 355
Score = 31.2 bits (70), Expect = 0.50
Identities = 49/307 (15%), Positives = 84/307 (27%), Gaps = 102/307 (33%)
Query: 12 LDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFILNISTAYEA 71
LDI P G + R +Y + I + +
Sbjct: 1662 LDIVINNPVNLTIHFGGEKGKRI------------RENY---SAMIFETIVDGKLKTEKI 1706
Query: 72 FVCFCNFLN-KSVFYVFYS----LNI------RMMQAYYATYNDLFKYNLPKLHRHF--H 118
F +N S Y F S L+ + A + DL L F H
Sbjct: 1707 F----KEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGH 1762
Query: 119 SCGLTPDLYLLDWIYT-LFSKA--M----GLDLVCK----IWDLVMRD--GEVFIFRAAL 165
S G Y L S A M +++V + V RD G A+
Sbjct: 1763 SLGE----------YAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAI 1812
Query: 166 DFKKAYDSIDRETLFNILEEYGADAKTVAIIKESLQATKSKIKFMGDISNPFEIKTGVRQ 225
+ + S +E L ++E G ++ I N
Sbjct: 1813 NPGRVAASFSQEALQYVVERVGKRT------GWLVE-----------IVN---------- 1845
Query: 226 GDGLSPLLFNCVLEKVIREWRIIS--KEGSKFLTKLPDNMDADKLFKSIAQMSVSIYRKS 283
+N ++ + + +T + + + K+ I ++ S+ S
Sbjct: 1846 --------YNVENQQY-----VAAGDLRALDTVTNVLNFIKLQKI--DIIELQKSL---S 1887
Query: 284 YETILEH 290
E + H
Sbjct: 1888 LEEVEGH 1894
Score = 26.9 bits (59), Expect = 9.2
Identities = 26/153 (16%), Positives = 46/153 (30%), Gaps = 49/153 (32%)
Query: 176 RETLFNIL----EEYGADAKTVAIIKESLQATKSKIKFMGDISNPFEIKTGVRQGDGLSP 231
+E IL E + AD + L KF+G +S+ E + L+
Sbjct: 34 QEQFNKILPEPTEGFAADDEPTTPA--ELVG-----KFLGYVSSLVEPSKVGQFDQVLNL 86
Query: 232 LL--F-NCVLE-----------------KVIREWRIISK--EGSKFLTKLPDNMDADKLF 269
L F NC LE +++ +I + D LF
Sbjct: 87 CLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF 146
Query: 270 KSIAQMSVSIY----------------RKSYET 286
+++ + + + R Y+T
Sbjct: 147 RAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT 179
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.8 bits (105), Expect = 2e-05
Identities = 46/305 (15%), Positives = 92/305 (30%), Gaps = 68/305 (22%)
Query: 2 LYDNTITQIRLDISRTFPHL----CLFQNEGPYYNTLHYM-------LASYVSYNTRISY 50
LY++ + ++SR P+L L + + + +A V + ++
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV-- 176
Query: 51 VQGMSYICALFILNISTAYEAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNL 110
M + +F LN+ ++V + L ++ + + + L
Sbjct: 177 QCKMDF--KIFWLNLKNCNSP---------ETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 111 P------KLHRHFHSCGLTPDLYLLD--WIYTLFSKAMGLDLVCKIWDLVM-RDGEVFIF 161
+L R S L +L + A +L CKI L+ R +V F
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW-NAF--NLSCKI--LLTTRFKQVTDF 280
Query: 162 RAALDFKKAYDSIDRETLFNILEEYGADAKTVAIIKESLQATKSKIKFMGDISNPFEIKT 221
+A E K + + L P E+ T
Sbjct: 281 LSAATTTH-ISLDHHSMTLTPDEVKSLLLKYLDCRPQDL---------------PREVLT 324
Query: 222 GVRQGDGLSPLLFNCVLEKVIREWRIISKEGSKFLTKLPDNMDADKLFK-SIAQMSVSIY 280
+P + + E IR+ K + + + S+ + + Y
Sbjct: 325 T-------NPRRLSIIAES-IRDGLATWDN-----WKHVNCDKLTTIIESSLNVLEPAEY 371
Query: 281 RKSYE 285
RK ++
Sbjct: 372 RKMFD 376
Score = 34.1 bits (77), Expect = 0.064
Identities = 34/219 (15%), Positives = 62/219 (28%), Gaps = 48/219 (21%)
Query: 83 VFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGL 142
+F++L + + ++ + N L + P + +I
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR------- 116
Query: 143 DLVCKIWDLVMRDGEVF----IFRAALDFKKAYDSIDRETLFNILEE-----YGAD--AK 191
D + D +VF + R + Y + R+ L + G K
Sbjct: 117 -------DRLYNDNQVFAKYNVSR-----LQPYLKL-RQALLELRPAKNVLIDGVLGSGK 163
Query: 192 TVAIIKESLQATKSKIKFMGDISNPFEIKTGVRQGDGLSPLLFNCVLEKVIREWRIISKE 251
T + + + K + K I F + VLE + + I
Sbjct: 164 TW-VALDVCLSYKVQCKMDFKI---FWLNLKNCNSPET-------VLEMLQKLLYQIDPN 212
Query: 252 GSKFLTKLPDNMDADKLFKSIAQMSVS--IYRKSYETIL 288
T D+ KL Q + + K YE L
Sbjct: 213 ----WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Score = 29.8 bits (66), Expect = 1.4
Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 234 FNCV-LEKVIREWRIISKEGSKFLTKLPDNMD-ADKLFKSIAQMSVSIYRKSYETILEHH 291
F+C ++ + + I+SKE + D + +LF ++ + +K E +L
Sbjct: 33 FDCKDVQDMPKS--ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR-- 88
Query: 292 KSY 294
+Y
Sbjct: 89 INY 91
>3kyl_A Telomerase reverse transcriptase; reverse transcriptase; 2.70A
{Tribolium castaneum} PDB: 3du5_A 3du6_A
Length = 596
Score = 37.6 bits (86), Expect = 0.004
Identities = 14/99 (14%), Positives = 33/99 (33%), Gaps = 2/99 (2%)
Query: 147 KIWDLVMRDGEVFIFRAALDFKKAYDSIDRETLFNILEEYGADAKTVAIIKESLQATKSK 206
W + + I+ +D + AY ++ L +++ + ++
Sbjct: 232 TCWSEFTQKTQGQIYGIKVDIRDAYGNVKIPVLCKLIQSIPTHLLDSEKKNFIVDHISNQ 291
Query: 207 IKFMGDISNPFEIKTGVRQGDGLSPLLFNCVLEKVIREW 245
++ G+ QGD LS L + + R +
Sbjct: 292 FVAFRR--KIYKWNHGLLQGDPLSGCLCELYMAFMDRLY 328
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.10
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 197 KESLQATKSKIKFMGDISNP-FEIKTGV 223
K++L+ ++ +K D S P IK +
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATM 46
Score = 28.0 bits (61), Expect = 2.6
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 11/37 (29%)
Query: 168 KKAYDSIDRETLFNILEEYGAD-AKTVAIIKESLQAT 203
K+ ++ + L L+ Y D A +AI +AT
Sbjct: 19 KQ---ALKK--LQASLKLYADDSAPALAI-----KAT 45
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.4 bits (65), Expect = 0.96
Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 239 EKVIREWRIISKEGSKFLTKLPDNMDADKL-FKSIAQMSVSIYRKSYETILEHHK 292
E IR+WR +E K L +L + ++ A+ + + + +E +K
Sbjct: 85 ES-IRKWR---EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 135
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A
{Neisseria meningitidis}
Length = 371
Score = 28.9 bits (65), Expect = 1.9
Identities = 16/115 (13%), Positives = 34/115 (29%), Gaps = 13/115 (11%)
Query: 177 ETLFNILEEYGADAKTVAIIKESLQATKS--KIKFMGDISNPFEIKTGVRQGDGLSPLLF 234
++L ++L G +A I E ++ + G GDG + +
Sbjct: 23 DSLADVLARSGMARDEIARITEKYGGEADLRHLR----ADQSVHVLVG---GDGGAREVQ 75
Query: 235 NCVLEKVIREWRIISKEGSKFLTKLPDNMDADKLFKSIAQMSVSIYRKSYETILE 289
E R + K+G + + SV + + ++
Sbjct: 76 FFTDEDGERNLVALEKKGGIWRRSA----SEADMKVLPTLRSVVVKTSARGSLAR 126
>1y0n_A Hypothetical UPF0270 protein PA3463; MCSG, midwest center for
structural genomics, protein struct initiative, PSI,
structural genomics; 2.00A {Pseudomonas aeruginosa}
SCOP: d.291.1.1
Length = 78
Score = 26.6 bits (59), Expect = 2.7
Identities = 6/16 (37%), Positives = 13/16 (81%)
Query: 171 YDSIDRETLFNILEEY 186
+D ++ +TL N+LE++
Sbjct: 7 HDLLEADTLNNLLEDF 22
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding,
RNA methylase, RSMD, SAM-fold, RNA methyltransferase;
1.90A {Mycobacterium tuberculosis}
Length = 189
Score = 27.5 bits (62), Expect = 4.0
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 176 RETLFNILEEYG 187
RE+LFNI+
Sbjct: 30 RESLFNIVTARR 41
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase,
PSI, protei structure initiative; HET: MSE; 2.05A
{Escherichia coli} SCOP: c.66.1.46
Length = 202
Score = 27.1 bits (61), Expect = 5.0
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 176 RETLFNILEEYGADAK 191
RETLFN L DA+
Sbjct: 42 RETLFNWLAPVIVDAQ 57
>1u5u_A Allene oxide synthase-lipoxygenase protein; catalase, heme,
eicosanoid, fusion PR lyase; HET: HEM; 2.00A {Plexaura
homomalla} SCOP: e.5.1.2
Length = 374
Score = 27.5 bits (61), Expect = 5.1
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 149 WDLVMRDGEVFIFRAALDF 167
D+VM GE IF +
Sbjct: 132 LDIVMNTGEANIFWNSPSL 150
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI,
protein structure initiative; 1.90A {Vibrio cholerae}
Length = 361
Score = 27.6 bits (62), Expect = 5.4
Identities = 17/94 (18%), Positives = 29/94 (30%), Gaps = 22/94 (23%)
Query: 177 ETLFNILEEYGADAKTVAIIKESLQATKS--------KIKFMGD----------ISNPFE 218
+TL I + G + I +++ M D + E
Sbjct: 16 DTLSGIFAQLGVPYSILQKILSVDLDHLQLDMIQPGEELELMMDDMGQLSRLIYHMSIVE 75
Query: 219 IKTGVRQGDGLSPLLFNCVLEKVIREWRIISKEG 252
R+ DG F+ +++ EWR I G
Sbjct: 76 KAIYTRENDG----SFSYDFQEISGEWREILFSG 105
>2esr_A Methyltransferase; structural genomics, hypothetical protein,
streptococcus PYO PSI, protein structure initiative;
HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Length = 177
Score = 27.1 bits (61), Expect = 5.9
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 31/65 (47%)
Query: 176 RETLFNILEEY-----------------------GA--------DAKTVAIIKESLQATK 204
R +FN++ Y G + K AII++++ TK
Sbjct: 19 RGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTK 78
Query: 205 SKIKF 209
++ +F
Sbjct: 79 AENRF 83
>3dy5_A Allene oxide synthase-lipoxygenase protein; fusion protein,
BI-functional enzyme, dioxygenase, fatty ACI
biosynthesis, heme, iron; HET: HEM; 3.51A {Plexaura
homomalla}
Length = 1066
Score = 27.5 bits (60), Expect = 6.8
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 149 WDLVMRDGEVFIFRAALDF 167
D+VM GE IF +
Sbjct: 132 LDIVMNTGEANIFWNSPSL 150
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiativ structural genomics,
ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Length = 967
Score = 27.2 bits (60), Expect = 8.6
Identities = 36/244 (14%), Positives = 79/244 (32%), Gaps = 48/244 (19%)
Query: 63 LNISTAYEAFVCFCNFLNKSVFYVFYSLNIRMMQAYYATYNDLFKYNLPKLHRHFHSCGL 122
L+ ST Y A+ +NK L+ + + Y L +++ K G+
Sbjct: 529 LSDSTIYMAYYTISRHINKLRQE--GKLDPEKLTPEFFDYIFLEEFSEDKEKELEKKTGI 586
Query: 123 TPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMRDGEVFIFRAALDFKKAY----------- 171
++ + + F LD C DL+ FIF F++ +
Sbjct: 587 PAEI--IHEMKEEFEYWYPLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFG 644
Query: 172 DSIDRE---------TLFNILEEYGADAKTVAIIKESLQATKSKIKFMGDISNPFEIKT- 221
++ + +EE GAD + I+ + + + F+ +
Sbjct: 645 TLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIM------------SLAEHDSDFDWRRK 692
Query: 222 GVRQGDGLSPLLFNCVLEKVIREWRIISKEGSKFLTKLPDNMDADKLFKSIAQMSVSIYR 281
V + + +++ R + +IS+ + + D D+ ++
Sbjct: 693 EVGK-----------LRKQIERFYELISQFAEYEVKGNVELKDIDRWMLHRLNKAIKETT 741
Query: 282 KSYE 285
+ E
Sbjct: 742 NALE 745
>1ws6_A Methyltransferase; structural genomics, riken structural
genomics/proteomics initiative, RSGI; 2.50A {Thermus
thermophilus} SCOP: c.66.1.46
Length = 171
Score = 26.3 bits (59), Expect = 9.3
Identities = 4/18 (22%), Positives = 6/18 (33%)
Query: 176 RETLFNILEEYGADAKTV 193
R+ LF+ L
Sbjct: 28 RKALFDYLRLRYPRRGRF 45
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.140 0.426
Gapped
Lambda K H
0.267 0.0702 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,587,787
Number of extensions: 271500
Number of successful extensions: 915
Number of sequences better than 10.0: 1
Number of HSP's gapped: 899
Number of HSP's successfully gapped: 35
Length of query: 295
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 202
Effective length of database: 4,105,140
Effective search space: 829238280
Effective search space used: 829238280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (25.8 bits)