RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17384
         (295 letters)



>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 188

 Score = 58.7 bits (141), Expect = 4e-11
 Identities = 19/171 (11%), Positives = 43/171 (25%), Gaps = 16/171 (9%)

Query: 95  MQAYYATYNDLFKYNLPKLHRHFHSCGLTPDLYLLDWIYTLFSKAMGLDLVCKIWDLVMR 154
           +       + L K     L+ HF +  +    +   W+  L  +   +  V ++WD  + 
Sbjct: 5   ILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLS 64

Query: 155 DGEVFIFRAALDFKKAYDSIDRETLFNILEEYGADAKTVAIIKESLQATKSKIKFMGDIS 214
           +    +  +              T   +           + +  +               
Sbjct: 65  ETSQEVTSSYSMSSNDIKPPVTPTEPRVA----------SFVTPTKDFQSPTTALSNMTP 114

Query: 215 NPFEIKTGVRQGDGLSPLLFNCVLEKVIREWRIISKEGS-----KFLTKLP 260
           N     +G  +   L+           + +W     E        FL   P
Sbjct: 115 NNAVEDSGKMRQSSLNEFHVFVCAA-FLIKWSDQLMEMDFQETITFLQNPP 164


>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 194

 Score = 54.5 bits (130), Expect = 1e-09
 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 1/94 (1%)

Query: 4   DNTITQIRLDISRTFPHLCLFQNEGPYYNTLHYMLASYVSYNTRISYVQGMSYICALFIL 63
             T  QI +DI RT PH+ L+Q +    N+L  +L  +   +    YVQG++ +   F  
Sbjct: 83  IPTWHQIEIDIPRTNPHIPLYQFK-SVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFE 141

Query: 64  NISTAYEAFVCFCNFLNKSVFYVFYSLNIRMMQA 97
              T Y       +   K          I  ++A
Sbjct: 142 TFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEA 175


>d1p80a2 e.5.1.1 (A:27-597) Catalase II {Escherichia coli, HPII
           [TaxId: 562]}
          Length = 571

 Score = 30.3 bits (68), Expect = 0.32
 Identities = 23/148 (15%), Positives = 44/148 (29%), Gaps = 17/148 (11%)

Query: 139 AMGLDLVCKIWDLVMRDGEVFIFRAALDFKKAYDSIDRETLFNILEEYGADAKTVAIIKE 198
           A        I+DLV  +  +F  + A  F     ++  E  + I +   A       +  
Sbjct: 160 ATKFYTEEGIFDLVGNNTPIFFIQDAHKFPDFVHAVKPEPHWAIPQGQSAHDTFWDYVSL 219

Query: 199 SLQATKSKIKFMGDISNPFEIKTGVRQGDGLSPLLFNCVL---EKVIREWRIISKEGSKF 255
             +   + +  M D   P       R  +G     F  +    +     +      G   
Sbjct: 220 QPETLHNVMWAMSDRGIPR----SYRTMEGFGIHTFRLINAEGKATFVRFHWKPLAGKAS 275

Query: 256 LT---------KLPDNMDADKLFKSIAQ 274
           L          + PD    + L+++I  
Sbjct: 276 LVWDEAQKLTGRDPDFHRRE-LWEAIEA 302


>d1y0na_ d.291.1.1 (A:) Hypothetical UPF0270 protein PA3463
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 78

 Score = 27.3 bits (61), Expect = 0.56
 Identities = 6/16 (37%), Positives = 13/16 (81%)

Query: 171 YDSIDRETLFNILEEY 186
           +D ++ +TL N+LE++
Sbjct: 7   HDLLEADTLNNLLEDF 22


>d1yqea1 c.56.7.1 (A:1-278) Hypothetical protein AF0625
           {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 278

 Score = 26.4 bits (58), Expect = 4.1
 Identities = 6/57 (10%), Positives = 18/57 (31%), Gaps = 7/57 (12%)

Query: 149 WDLVMRDGEVFI-------FRAALDFKKAYDSIDRETLFNILEEYGADAKTVAIIKE 198
           +       E  +           +  +K+ +S  ++ +    E  G +      +K+
Sbjct: 217 YTFEHLTAEFLVKAVKLSEAEYIIIDEKSVNSAVKKIVNEAAEVAGVEVLKSKKVKK 273


>d1afra_ a.25.1.2 (A:) delta 9-stearoyl-acyl carrier protein
           desaturase {Castor bean (Ricinus communis) [TaxId:
           3988]}
          Length = 345

 Score = 26.4 bits (58), Expect = 4.3
 Identities = 9/35 (25%), Positives = 19/35 (54%), Gaps = 8/35 (22%)

Query: 237 VLEKVIREWRI-----ISKEGSK---FLTKLPDNM 263
           +LE ++  W++     +S EG K   ++ +LP  +
Sbjct: 282 ILEFLVGRWKVDKLTGLSAEGQKAQDYVCRLPPRI 316


>d1u5ua_ e.5.1.2 (A:) Allene oxide synthase-lipoxygenase protein,
           N-terminal domain {Black sea rod (Plexaura homomalla)
           [TaxId: 47982]}
          Length = 366

 Score = 26.1 bits (57), Expect = 5.3
 Identities = 7/19 (36%), Positives = 9/19 (47%)

Query: 149 WDLVMRDGEVFIFRAALDF 167
            D+VM  GE  IF  +   
Sbjct: 130 LDIVMNTGEANIFWNSPSL 148


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.140    0.426 

Gapped
Lambda     K      H
   0.267   0.0639    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,124,995
Number of extensions: 53163
Number of successful extensions: 204
Number of sequences better than 10.0: 1
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 14
Length of query: 295
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 210
Effective length of database: 1,240,546
Effective search space: 260514660
Effective search space used: 260514660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.0 bits)