Query psy17386
Match_columns 276
No_of_seqs 151 out of 1236
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 21:07:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17386.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17386hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 9E-100 2E-104 785.2 23.6 269 1-271 97-498 (1463)
2 PTZ00014 myosin-A; Provisional 100.0 5.8E-97 1E-101 755.9 28.5 266 1-266 127-516 (821)
3 cd01380 MYSc_type_V Myosin mot 100.0 1.6E-95 3E-100 737.5 28.8 265 1-265 31-421 (691)
4 cd01377 MYSc_type_II Myosin mo 100.0 1.7E-95 4E-100 737.5 28.4 267 1-267 36-429 (693)
5 cd01381 MYSc_type_VII Myosin m 100.0 3.9E-95 8E-100 732.3 28.6 264 1-265 31-415 (671)
6 cd01384 MYSc_type_XI Myosin mo 100.0 8.3E-94 1.8E-98 722.5 29.0 265 1-266 32-421 (674)
7 cd01387 MYSc_type_XV Myosin mo 100.0 1E-93 2.3E-98 722.5 28.8 263 1-265 32-414 (677)
8 cd01385 MYSc_type_IX Myosin mo 100.0 7.4E-94 1.6E-98 725.1 27.3 266 1-266 38-431 (692)
9 cd01386 MYSc_type_XVIII Myosin 100.0 9.9E-94 2.1E-98 729.2 27.8 265 1-265 31-432 (767)
10 cd01378 MYSc_type_I Myosin mot 100.0 1.6E-93 3.6E-98 721.2 28.5 266 1-266 31-420 (674)
11 cd01383 MYSc_type_VIII Myosin 100.0 1.9E-93 4.2E-98 720.1 28.7 261 1-265 39-418 (677)
12 cd01379 MYSc_type_III Myosin m 100.0 2.4E-93 5.2E-98 717.0 26.8 265 1-265 31-426 (653)
13 cd00124 MYSc Myosin motor doma 100.0 9.1E-92 2E-96 710.7 27.9 266 1-266 31-416 (679)
14 smart00242 MYSc Myosin. Large 100.0 1.7E-91 3.6E-96 708.1 28.2 267 1-267 37-424 (677)
15 cd01382 MYSc_type_VI Myosin mo 100.0 3.6E-91 7.7E-96 707.8 27.2 264 1-266 35-451 (717)
16 KOG0164|consensus 100.0 7.1E-92 1.5E-96 684.8 20.8 266 1-267 39-430 (1001)
17 PF00063 Myosin_head: Myosin h 100.0 8.4E-90 1.8E-94 698.3 23.0 268 1-268 30-420 (689)
18 KOG0161|consensus 100.0 4.7E-89 1E-93 730.6 19.8 270 1-272 113-520 (1930)
19 KOG0162|consensus 100.0 1.5E-87 3.3E-92 655.1 19.3 265 1-267 49-438 (1106)
20 KOG0163|consensus 100.0 1.7E-87 3.8E-92 655.8 18.5 269 1-271 88-521 (1259)
21 KOG0160|consensus 100.0 6E-76 1.3E-80 594.3 17.9 264 1-265 39-421 (862)
22 KOG4229|consensus 100.0 2.1E-66 4.6E-71 535.5 13.3 268 1-268 92-483 (1062)
23 cd01363 Motor_domain Myosin an 98.8 5.8E-09 1.2E-13 90.3 6.5 87 39-131 8-95 (186)
24 KOG0925|consensus 96.6 0.0019 4E-08 63.7 4.0 64 8-79 22-86 (699)
25 PF13207 AAA_17: AAA domain; P 96.6 0.0019 4.1E-08 50.9 3.2 23 58-80 1-23 (121)
26 cd00009 AAA The AAA+ (ATPases 96.2 0.0079 1.7E-07 47.2 4.9 30 52-81 15-44 (151)
27 PF13401 AAA_22: AAA domain; P 96.2 0.0042 9.1E-08 49.3 3.0 29 54-82 2-30 (131)
28 PF13238 AAA_18: AAA domain; P 96.1 0.0047 1E-07 48.5 3.0 22 59-80 1-22 (129)
29 PF13191 AAA_16: AAA ATPase do 96.0 0.0058 1.3E-07 51.2 3.2 33 51-83 19-51 (185)
30 smart00382 AAA ATPases associa 95.8 0.008 1.7E-07 46.5 2.9 28 56-83 2-29 (148)
31 PF00004 AAA: ATPase family as 95.8 0.0085 1.8E-07 47.2 3.1 23 59-81 1-23 (132)
32 TIGR02322 phosphon_PhnN phosph 95.8 0.0091 2E-07 50.5 3.4 25 57-81 2-26 (179)
33 cd02019 NK Nucleoside/nucleoti 95.7 0.012 2.5E-07 42.7 3.3 22 59-80 2-23 (69)
34 TIGR03420 DnaA_homol_Hda DnaA 95.5 0.029 6.3E-07 48.9 5.7 40 43-82 25-64 (226)
35 PRK05480 uridine/cytidine kina 95.4 0.016 3.4E-07 50.5 3.8 27 54-80 4-30 (209)
36 PRK06762 hypothetical protein; 95.4 0.017 3.6E-07 48.3 3.7 25 56-80 2-26 (166)
37 PRK07261 topology modulation p 95.4 0.015 3.2E-07 49.6 3.3 24 57-80 1-24 (171)
38 PRK00300 gmk guanylate kinase; 95.4 0.015 3.2E-07 50.3 3.3 27 55-81 4-30 (205)
39 PRK06696 uridine kinase; Valid 95.3 0.028 6.1E-07 49.7 5.1 30 53-82 19-48 (223)
40 PRK05541 adenylylsulfate kinas 95.3 0.017 3.7E-07 48.8 3.5 29 54-82 5-33 (176)
41 PRK08118 topology modulation p 95.3 0.016 3.6E-07 49.2 3.4 25 57-81 2-26 (167)
42 PRK08233 hypothetical protein; 95.2 0.014 3.1E-07 49.0 2.8 25 57-81 4-28 (182)
43 PRK00131 aroK shikimate kinase 95.2 0.022 4.7E-07 47.3 3.7 26 55-80 3-28 (175)
44 cd01131 PilT Pilus retraction 95.2 0.017 3.7E-07 50.3 3.2 25 58-82 3-27 (198)
45 cd02020 CMPK Cytidine monophos 95.2 0.019 4E-07 46.4 3.2 22 59-80 2-23 (147)
46 PF01583 APS_kinase: Adenylyls 95.2 0.026 5.7E-07 47.9 4.1 29 56-84 2-30 (156)
47 PF05729 NACHT: NACHT domain 95.1 0.023 4.9E-07 46.4 3.7 27 58-84 2-28 (166)
48 PF00485 PRK: Phosphoribulokin 95.1 0.017 3.7E-07 49.9 3.0 25 59-83 2-26 (194)
49 PHA02544 44 clamp loader, smal 95.1 0.029 6.2E-07 51.8 4.7 54 25-80 13-67 (316)
50 TIGR02173 cyt_kin_arch cytidyl 95.0 0.019 4.2E-07 47.7 3.0 23 58-80 2-24 (171)
51 cd00227 CPT Chloramphenicol (C 95.0 0.025 5.4E-07 48.0 3.7 25 56-80 2-26 (175)
52 PRK12402 replication factor C 95.0 0.042 9.2E-07 50.8 5.5 36 47-82 27-62 (337)
53 TIGR03015 pepcterm_ATPase puta 95.0 0.035 7.7E-07 49.7 4.7 28 54-81 41-68 (269)
54 cd02023 UMPK Uridine monophosp 94.9 0.022 4.8E-07 49.1 3.2 22 59-80 2-23 (198)
55 TIGR00150 HI0065_YjeE ATPase, 94.9 0.055 1.2E-06 44.7 5.4 28 54-81 20-47 (133)
56 cd00820 PEPCK_HprK Phosphoenol 94.9 0.024 5.3E-07 45.1 3.1 23 55-77 14-36 (107)
57 TIGR00235 udk uridine kinase. 94.9 0.026 5.7E-07 49.2 3.6 27 55-81 5-31 (207)
58 cd01918 HprK_C HprK/P, the bif 94.9 0.025 5.4E-07 47.7 3.3 25 55-79 13-37 (149)
59 PRK06547 hypothetical protein; 94.9 0.048 1E-06 46.7 5.1 29 52-80 11-39 (172)
60 PLN03025 replication factor C 94.9 0.041 8.8E-07 51.4 5.0 56 24-81 4-59 (319)
61 cd01129 PulE-GspE PulE/GspE Th 94.9 0.038 8.3E-07 50.5 4.7 36 46-82 71-106 (264)
62 PRK13833 conjugal transfer pro 94.9 0.037 8.1E-07 52.3 4.7 34 47-82 137-170 (323)
63 PRK08084 DNA replication initi 94.8 0.06 1.3E-06 48.2 5.8 40 43-82 32-71 (235)
64 TIGR02928 orc1/cdc6 family rep 94.8 0.039 8.5E-07 51.9 4.7 37 46-82 30-66 (365)
65 PF03266 NTPase_1: NTPase; In 94.8 0.027 5.9E-07 48.1 3.3 24 59-82 2-25 (168)
66 KOG0924|consensus 94.8 0.069 1.5E-06 54.9 6.5 115 39-159 357-483 (1042)
67 PF12846 AAA_10: AAA-like doma 94.7 0.031 6.8E-07 50.2 3.8 30 56-85 1-30 (304)
68 PF07724 AAA_2: AAA domain (Cd 94.7 0.033 7.1E-07 47.7 3.6 24 58-81 5-28 (171)
69 COG0194 Gmk Guanylate kinase [ 94.7 0.026 5.5E-07 49.3 2.9 25 56-80 4-28 (191)
70 PF13671 AAA_33: AAA domain; P 94.7 0.024 5.1E-07 45.7 2.6 23 59-81 2-24 (143)
71 PTZ00301 uridine kinase; Provi 94.7 0.028 6.2E-07 49.8 3.3 23 59-81 6-28 (210)
72 cd02028 UMPK_like Uridine mono 94.7 0.03 6.5E-07 48.1 3.3 24 59-82 2-25 (179)
73 cd01130 VirB11-like_ATPase Typ 94.6 0.029 6.3E-07 48.2 3.1 26 56-81 25-50 (186)
74 PRK00440 rfc replication facto 94.6 0.061 1.3E-06 49.3 5.4 37 45-81 27-63 (319)
75 COG0444 DppD ABC-type dipeptid 94.6 0.026 5.7E-07 52.9 2.9 28 54-81 29-56 (316)
76 TIGR02782 TrbB_P P-type conjug 94.6 0.052 1.1E-06 50.6 4.9 34 47-82 125-158 (299)
77 PRK06217 hypothetical protein; 94.5 0.03 6.4E-07 47.9 3.0 24 58-81 3-26 (183)
78 PRK00889 adenylylsulfate kinas 94.5 0.043 9.3E-07 46.3 3.9 28 55-82 3-30 (175)
79 PRK09270 nucleoside triphospha 94.5 0.074 1.6E-06 47.2 5.6 32 53-84 30-61 (229)
80 PF03668 ATP_bind_2: P-loop AT 94.5 0.027 5.9E-07 52.2 2.8 20 57-76 2-21 (284)
81 PF13245 AAA_19: Part of AAA d 94.5 0.062 1.3E-06 39.9 4.2 28 55-82 9-36 (76)
82 PF00910 RNA_helicase: RNA hel 94.5 0.035 7.5E-07 43.5 3.0 25 59-83 1-25 (107)
83 TIGR01313 therm_gnt_kin carboh 94.5 0.025 5.5E-07 47.0 2.4 23 59-81 1-23 (163)
84 cd00071 GMPK Guanosine monopho 94.4 0.029 6.3E-07 46.0 2.6 23 59-81 2-24 (137)
85 TIGR03263 guanyl_kin guanylate 94.4 0.027 5.9E-07 47.5 2.5 25 57-81 2-26 (180)
86 cd02027 APSK Adenosine 5'-phos 94.4 0.038 8.2E-07 45.9 3.3 24 59-82 2-25 (149)
87 PRK10078 ribose 1,5-bisphospho 94.4 0.03 6.5E-07 48.0 2.7 24 57-80 3-26 (186)
88 PRK14961 DNA polymerase III su 94.4 0.09 2E-06 50.1 6.1 58 23-82 6-64 (363)
89 PRK14737 gmk guanylate kinase; 94.3 0.034 7.3E-07 48.2 2.9 26 55-80 3-28 (186)
90 cd02025 PanK Pantothenate kina 94.3 0.037 8E-07 49.2 3.2 24 59-82 2-25 (220)
91 cd00464 SK Shikimate kinase (S 94.3 0.041 8.8E-07 44.9 3.1 24 58-81 1-24 (154)
92 PRK08903 DnaA regulatory inact 94.2 0.1 2.2E-06 45.9 5.6 29 54-82 40-68 (227)
93 cd01120 RecA-like_NTPases RecA 94.2 0.048 1E-06 44.0 3.3 24 59-82 2-25 (165)
94 PRK13342 recombination factor 94.1 0.069 1.5E-06 51.8 4.9 36 45-80 25-60 (413)
95 TIGR01360 aden_kin_iso1 adenyl 94.1 0.045 9.9E-07 46.2 3.2 24 57-80 4-27 (188)
96 PRK00411 cdc6 cell division co 94.1 0.073 1.6E-06 50.6 5.0 34 49-82 48-81 (394)
97 PRK13900 type IV secretion sys 94.1 0.065 1.4E-06 50.7 4.5 25 57-81 161-185 (332)
98 cd02024 NRK1 Nicotinamide ribo 94.1 0.042 9.1E-07 47.9 2.9 22 59-80 2-23 (187)
99 PRK03846 adenylylsulfate kinas 94.0 0.06 1.3E-06 46.6 3.9 30 53-82 21-50 (198)
100 PRK14738 gmk guanylate kinase; 94.0 0.05 1.1E-06 47.6 3.4 26 54-79 11-36 (206)
101 PRK13851 type IV secretion sys 94.0 0.055 1.2E-06 51.5 3.7 26 56-81 162-187 (344)
102 COG1660 Predicted P-loop-conta 93.9 0.039 8.5E-07 50.6 2.5 19 58-76 3-21 (286)
103 PF00437 T2SE: Type II/IV secr 93.9 0.041 9E-07 49.8 2.7 28 55-82 126-153 (270)
104 TIGR01420 pilT_fam pilus retra 93.9 0.058 1.3E-06 51.1 3.8 35 47-82 114-148 (343)
105 cd02021 GntK Gluconate kinase 93.9 0.048 1E-06 44.6 2.8 22 59-80 2-23 (150)
106 TIGR02524 dot_icm_DotB Dot/Icm 93.8 0.051 1.1E-06 52.0 3.3 29 55-83 133-161 (358)
107 PRK04182 cytidylate kinase; Pr 93.8 0.051 1.1E-06 45.4 2.9 23 58-80 2-24 (180)
108 PRK12377 putative replication 93.8 0.12 2.5E-06 47.1 5.4 43 39-83 86-128 (248)
109 TIGR02902 spore_lonB ATP-depen 93.8 0.087 1.9E-06 52.9 5.0 35 46-80 76-110 (531)
110 PRK05057 aroK shikimate kinase 93.7 0.066 1.4E-06 45.6 3.4 25 56-80 4-28 (172)
111 PRK04040 adenylate kinase; Pro 93.7 0.065 1.4E-06 46.5 3.4 25 57-81 3-27 (188)
112 PRK06893 DNA replication initi 93.7 0.15 3.3E-06 45.3 5.8 32 52-83 35-66 (229)
113 TIGR01359 UMP_CMP_kin_fam UMP- 93.6 0.061 1.3E-06 45.4 3.1 23 59-81 2-24 (183)
114 TIGR00554 panK_bact pantothena 93.6 0.12 2.7E-06 48.1 5.2 29 54-82 60-88 (290)
115 PRK10751 molybdopterin-guanine 93.6 0.066 1.4E-06 46.2 3.2 26 57-82 7-32 (173)
116 COG0563 Adk Adenylate kinase a 93.6 0.065 1.4E-06 46.2 3.2 23 58-80 2-24 (178)
117 PRK14531 adenylate kinase; Pro 93.5 0.075 1.6E-06 45.5 3.5 24 57-80 3-26 (183)
118 KOG0922|consensus 93.5 0.098 2.1E-06 53.3 4.7 115 39-161 52-180 (674)
119 PRK14527 adenylate kinase; Pro 93.5 0.076 1.6E-06 45.6 3.5 28 54-81 4-31 (191)
120 PF07728 AAA_5: AAA domain (dy 93.5 0.068 1.5E-06 43.1 3.0 22 59-80 2-23 (139)
121 TIGR02525 plasmid_TraJ plasmid 93.5 0.065 1.4E-06 51.6 3.3 28 56-83 149-176 (372)
122 PRK09825 idnK D-gluconate kina 93.4 0.08 1.7E-06 45.4 3.5 26 56-81 3-28 (176)
123 PRK14964 DNA polymerase III su 93.4 0.092 2E-06 52.3 4.3 55 24-82 4-61 (491)
124 PRK06645 DNA polymerase III su 93.4 0.12 2.7E-06 51.7 5.2 57 24-82 12-69 (507)
125 PRK14956 DNA polymerase III su 93.3 0.12 2.6E-06 51.4 5.0 55 24-82 9-66 (484)
126 COG1125 OpuBA ABC-type proline 93.3 0.058 1.3E-06 49.6 2.6 29 57-85 28-56 (309)
127 PRK03839 putative kinase; Prov 93.3 0.076 1.7E-06 45.0 3.2 23 58-80 2-24 (180)
128 PRK08727 hypothetical protein; 93.3 0.17 3.7E-06 45.2 5.5 31 53-83 38-68 (233)
129 PF03205 MobB: Molybdopterin g 93.3 0.095 2.1E-06 43.4 3.6 27 58-84 2-28 (140)
130 PF03215 Rad17: Rad17 cell cyc 93.3 0.11 2.4E-06 52.2 4.6 59 23-81 9-70 (519)
131 PF01637 Arch_ATPase: Archaeal 93.2 0.095 2E-06 45.0 3.7 34 47-80 11-44 (234)
132 PHA00729 NTP-binding motif con 93.2 0.17 3.7E-06 45.5 5.3 39 42-81 4-42 (226)
133 PRK14955 DNA polymerase III su 93.2 0.16 3.6E-06 49.0 5.6 56 25-82 8-64 (397)
134 PF13555 AAA_29: P-loop contai 93.2 0.12 2.5E-06 37.2 3.4 24 58-81 25-48 (62)
135 PF00158 Sigma54_activat: Sigm 93.1 0.12 2.5E-06 44.2 4.0 26 54-79 20-45 (168)
136 PHA02530 pseT polynucleotide k 93.1 0.078 1.7E-06 48.5 3.1 24 57-80 3-26 (300)
137 PF00625 Guanylate_kin: Guanyl 93.1 0.1 2.2E-06 44.6 3.6 26 56-81 2-27 (183)
138 COG1102 Cmk Cytidylate kinase 93.1 0.081 1.8E-06 45.4 2.9 24 58-81 2-25 (179)
139 PF03193 DUF258: Protein of un 93.1 0.1 2.3E-06 44.5 3.6 31 49-79 28-58 (161)
140 COG0529 CysC Adenylylsulfate k 93.1 0.16 3.4E-06 44.4 4.6 34 52-85 19-52 (197)
141 PF00005 ABC_tran: ABC transpo 93.0 0.083 1.8E-06 42.3 2.8 27 55-81 10-36 (137)
142 TIGR03574 selen_PSTK L-seryl-t 93.0 0.087 1.9E-06 47.3 3.2 24 59-82 2-25 (249)
143 COG0572 Udk Uridine kinase [Nu 93.0 0.087 1.9E-06 47.1 3.1 23 59-81 11-33 (218)
144 PRK07667 uridine kinase; Provi 93.0 0.096 2.1E-06 45.3 3.3 26 57-82 18-43 (193)
145 cd03115 SRP The signal recogni 92.9 0.12 2.6E-06 43.4 3.7 26 58-83 2-27 (173)
146 TIGR01166 cbiO cobalt transpor 92.9 0.1 2.2E-06 44.6 3.3 27 54-80 16-42 (190)
147 PRK04195 replication factor C 92.9 0.11 2.3E-06 51.5 3.9 27 54-80 37-63 (482)
148 PRK14528 adenylate kinase; Pro 92.8 0.11 2.3E-06 44.8 3.5 24 57-80 2-25 (186)
149 TIGR02533 type_II_gspE general 92.8 0.12 2.7E-06 51.4 4.2 35 46-81 233-267 (486)
150 cd03293 ABC_NrtD_SsuB_transpor 92.8 0.097 2.1E-06 45.8 3.1 27 54-80 28-54 (220)
151 PTZ00112 origin recognition co 92.8 0.33 7.1E-06 51.8 7.3 37 46-82 770-807 (1164)
152 TIGR02673 FtsE cell division A 92.7 0.11 2.3E-06 45.2 3.3 27 54-80 26-52 (214)
153 TIGR00960 3a0501s02 Type II (G 92.7 0.11 2.4E-06 45.3 3.3 27 54-80 27-53 (216)
154 PRK14962 DNA polymerase III su 92.7 0.21 4.7E-06 49.5 5.7 54 25-82 6-62 (472)
155 PF06414 Zeta_toxin: Zeta toxi 92.6 0.12 2.5E-06 44.9 3.4 28 53-80 12-39 (199)
156 COG4608 AppF ABC-type oligopep 92.6 0.095 2.1E-06 48.2 2.9 53 54-106 37-97 (268)
157 PRK14957 DNA polymerase III su 92.6 0.21 4.6E-06 50.4 5.6 55 24-82 7-64 (546)
158 PF02367 UPF0079: Uncharacteri 92.6 0.23 4.9E-06 40.5 4.8 28 54-81 13-40 (123)
159 cd03292 ABC_FtsE_transporter F 92.6 0.12 2.5E-06 45.0 3.3 27 54-80 25-51 (214)
160 cd03225 ABC_cobalt_CbiO_domain 92.5 0.12 2.6E-06 44.8 3.3 27 54-80 25-51 (211)
161 PRK14970 DNA polymerase III su 92.5 0.28 6.1E-06 46.5 6.1 58 23-82 7-65 (367)
162 cd03259 ABC_Carb_Solutes_like 92.5 0.12 2.6E-06 45.0 3.3 27 54-80 24-50 (213)
163 cd03255 ABC_MJ0796_Lo1CDE_FtsE 92.5 0.12 2.6E-06 45.1 3.3 28 54-81 28-55 (218)
164 TIGR02881 spore_V_K stage V sp 92.5 0.13 2.8E-06 46.6 3.6 29 55-83 41-69 (261)
165 PRK15177 Vi polysaccharide exp 92.5 0.12 2.6E-06 45.4 3.3 28 54-81 11-38 (213)
166 cd03258 ABC_MetN_methionine_tr 92.4 0.12 2.7E-06 45.5 3.3 28 54-81 29-56 (233)
167 TIGR02903 spore_lon_C ATP-depe 92.4 0.22 4.8E-06 51.0 5.6 34 48-81 167-200 (615)
168 TIGR00455 apsK adenylylsulfate 92.4 0.2 4.4E-06 42.6 4.5 29 54-82 16-44 (184)
169 PRK15093 antimicrobial peptide 92.4 0.12 2.6E-06 48.7 3.4 28 54-81 31-58 (330)
170 cd03260 ABC_PstB_phosphate_tra 92.4 0.13 2.8E-06 45.2 3.4 27 54-80 24-50 (227)
171 PF07693 KAP_NTPase: KAP famil 92.4 0.25 5.5E-06 45.5 5.5 30 54-83 18-47 (325)
172 PRK13341 recombination factor 92.4 0.19 4.2E-06 52.4 5.2 36 45-80 41-76 (725)
173 TIGR02868 CydC thiol reductant 92.3 0.086 1.9E-06 52.4 2.4 29 54-82 359-387 (529)
174 PRK06761 hypothetical protein; 92.3 0.11 2.4E-06 48.2 2.9 26 57-82 4-29 (282)
175 PRK12608 transcription termina 92.3 0.17 3.7E-06 48.8 4.3 42 41-82 118-159 (380)
176 PRK05416 glmZ(sRNA)-inactivati 92.3 0.1 2.3E-06 48.4 2.8 22 56-77 6-27 (288)
177 PRK14530 adenylate kinase; Pro 92.3 0.13 2.7E-06 45.1 3.2 24 58-81 5-28 (215)
178 PRK08356 hypothetical protein; 92.3 0.1 2.3E-06 45.0 2.6 22 57-78 6-27 (195)
179 PRK00698 tmk thymidylate kinas 92.3 0.16 3.4E-06 43.5 3.7 27 56-82 3-29 (205)
180 cd00879 Sar1 Sar1 subfamily. 92.2 0.26 5.7E-06 41.5 5.1 34 44-77 7-40 (190)
181 PRK03731 aroL shikimate kinase 92.2 0.15 3.1E-06 42.8 3.4 25 57-81 3-27 (171)
182 PRK13894 conjugal transfer ATP 92.2 0.13 2.8E-06 48.5 3.4 28 56-83 148-175 (319)
183 PRK13947 shikimate kinase; Pro 92.2 0.14 3.1E-06 42.7 3.3 24 58-81 3-26 (171)
184 cd01983 Fer4_NifH The Fer4_Nif 92.2 0.18 3.9E-06 36.9 3.5 24 59-82 2-25 (99)
185 PF04665 Pox_A32: Poxvirus A32 92.2 0.13 2.8E-06 46.7 3.2 25 58-82 15-39 (241)
186 cd03229 ABC_Class3 This class 92.2 0.14 3.1E-06 43.4 3.3 27 54-80 24-50 (178)
187 PRK08116 hypothetical protein; 92.2 0.3 6.6E-06 44.7 5.7 29 55-83 113-141 (268)
188 PRK05896 DNA polymerase III su 92.2 0.26 5.6E-06 50.3 5.7 59 23-83 6-65 (605)
189 cd03296 ABC_CysA_sulfate_impor 92.2 0.13 2.9E-06 45.6 3.3 27 54-80 26-52 (239)
190 TIGR03608 L_ocin_972_ABC putat 92.2 0.14 2.9E-06 44.2 3.2 27 54-80 22-48 (206)
191 PRK11308 dppF dipeptide transp 92.2 0.13 2.8E-06 48.5 3.3 28 54-81 39-66 (327)
192 PF07475 Hpr_kinase_C: HPr Ser 92.2 0.12 2.7E-06 44.4 2.9 24 56-79 18-41 (171)
193 TIGR00176 mobB molybdopterin-g 92.1 0.16 3.5E-06 42.7 3.6 25 59-83 2-26 (155)
194 PRK13764 ATPase; Provisional 92.1 0.14 3.1E-06 52.2 3.8 27 56-82 257-283 (602)
195 cd01672 TMPK Thymidine monopho 92.1 0.14 3.1E-06 43.1 3.3 24 59-82 3-26 (200)
196 COG1618 Predicted nucleotide k 92.1 0.16 3.4E-06 43.7 3.4 26 57-82 6-31 (179)
197 COG1124 DppF ABC-type dipeptid 92.1 0.14 3E-06 46.6 3.2 30 53-82 30-59 (252)
198 COG1474 CDC6 Cdc6-related prot 92.1 0.41 8.8E-06 46.0 6.7 64 45-108 31-100 (366)
199 TIGR02788 VirB11 P-type DNA tr 92.1 0.11 2.3E-06 48.5 2.6 26 56-81 144-169 (308)
200 PRK14958 DNA polymerase III su 92.1 0.28 6.1E-06 49.1 5.8 55 24-82 7-64 (509)
201 cd04155 Arl3 Arl3 subfamily. 92.1 0.2 4.3E-06 41.4 4.0 30 48-77 6-35 (173)
202 TIGR00678 holB DNA polymerase 92.1 0.22 4.7E-06 42.6 4.4 37 47-83 4-41 (188)
203 PF13173 AAA_14: AAA domain 92.1 0.17 3.8E-06 40.5 3.5 26 56-81 2-27 (128)
204 cd03224 ABC_TM1139_LivF_branch 92.1 0.14 3E-06 44.7 3.2 27 54-80 24-50 (222)
205 cd02029 PRK_like Phosphoribulo 92.1 0.14 3E-06 47.3 3.3 25 59-83 2-26 (277)
206 cd01124 KaiC KaiC is a circadi 92.0 0.15 3.2E-06 42.9 3.3 26 58-83 1-26 (187)
207 cd03269 ABC_putative_ATPase Th 92.0 0.15 3.2E-06 44.2 3.3 27 54-80 24-50 (210)
208 PRK02496 adk adenylate kinase; 92.0 0.15 3.2E-06 43.4 3.2 23 58-80 3-25 (184)
209 cd03219 ABC_Mj1267_LivG_branch 92.0 0.13 2.9E-06 45.3 3.1 27 54-80 24-50 (236)
210 cd03235 ABC_Metallic_Cations A 92.0 0.13 2.9E-06 44.6 3.0 27 54-80 23-49 (213)
211 PF13604 AAA_30: AAA domain; P 92.0 0.3 6.5E-06 42.5 5.2 38 45-83 8-45 (196)
212 TIGR02315 ABC_phnC phosphonate 92.0 0.15 3.2E-06 45.3 3.3 27 54-80 26-52 (243)
213 PF00308 Bac_DnaA: Bacterial d 92.0 0.41 8.8E-06 42.5 6.1 43 43-85 19-63 (219)
214 cd03262 ABC_HisP_GlnQ_permease 92.0 0.15 3.3E-06 44.2 3.3 27 54-80 24-50 (213)
215 PRK06620 hypothetical protein; 92.0 0.3 6.4E-06 43.3 5.2 22 57-78 45-66 (214)
216 PRK13946 shikimate kinase; Pro 92.0 0.16 3.5E-06 43.5 3.4 26 55-80 9-34 (184)
217 cd03265 ABC_DrrA DrrA is the A 92.0 0.15 3.3E-06 44.6 3.4 26 54-79 24-49 (220)
218 TIGR03864 PQQ_ABC_ATP ABC tran 92.0 0.15 3.3E-06 45.2 3.3 27 54-80 25-51 (236)
219 PRK09473 oppD oligopeptide tra 92.0 0.13 2.8E-06 48.5 3.1 28 54-81 40-67 (330)
220 cd03268 ABC_BcrA_bacitracin_re 91.9 0.16 3.4E-06 44.1 3.3 27 54-80 24-50 (208)
221 TIGR03499 FlhF flagellar biosy 91.9 0.18 4E-06 46.4 4.0 29 55-83 193-221 (282)
222 cd03256 ABC_PhnC_transporter A 91.9 0.15 3.3E-06 45.0 3.3 27 54-80 25-51 (241)
223 smart00072 GuKc Guanylate kina 91.9 0.14 3E-06 43.9 2.9 23 58-80 4-26 (184)
224 TIGR02880 cbbX_cfxQ probable R 91.9 0.16 3.4E-06 46.9 3.5 27 58-84 60-86 (284)
225 PRK11176 lipid transporter ATP 91.9 0.13 2.8E-06 51.7 3.1 29 54-82 367-395 (582)
226 PRK14969 DNA polymerase III su 91.9 0.28 6E-06 49.3 5.5 55 24-82 7-64 (527)
227 cd03297 ABC_ModC_molybdenum_tr 91.8 0.15 3.2E-06 44.5 3.1 26 54-80 22-47 (214)
228 cd03266 ABC_NatA_sodium_export 91.8 0.16 3.4E-06 44.3 3.3 27 54-80 29-55 (218)
229 PRK15453 phosphoribulokinase; 91.8 0.15 3.3E-06 47.4 3.3 28 55-82 4-31 (290)
230 cd03226 ABC_cobalt_CbiO_domain 91.8 0.16 3.4E-06 44.0 3.2 27 54-80 24-50 (205)
231 PRK15079 oligopeptide ABC tran 91.8 0.15 3.2E-06 48.2 3.3 28 54-81 45-72 (331)
232 PF01580 FtsK_SpoIIIE: FtsK/Sp 91.8 0.16 3.5E-06 43.9 3.3 25 58-82 40-64 (205)
233 PRK09112 DNA polymerase III su 91.8 0.29 6.3E-06 46.7 5.2 40 43-82 31-71 (351)
234 cd03218 ABC_YhbG The ABC trans 91.8 0.16 3.5E-06 44.6 3.3 27 54-80 24-50 (232)
235 TIGR02397 dnaX_nterm DNA polym 91.7 0.4 8.6E-06 44.8 6.1 57 24-82 5-62 (355)
236 PRK11124 artP arginine transpo 91.7 0.16 3.6E-06 45.0 3.3 27 54-80 26-52 (242)
237 PRK10908 cell division protein 91.7 0.17 3.7E-06 44.4 3.3 27 54-80 26-52 (222)
238 cd03116 MobB Molybdenum is an 91.7 0.21 4.6E-06 42.3 3.8 27 57-83 2-28 (159)
239 cd01428 ADK Adenylate kinase ( 91.7 0.16 3.5E-06 43.1 3.0 22 59-80 2-23 (194)
240 COG0802 Predicted ATPase or ki 91.6 0.44 9.6E-06 40.2 5.6 29 54-82 23-51 (149)
241 COG0630 VirB11 Type IV secreto 91.6 0.24 5.2E-06 46.5 4.4 38 43-81 131-168 (312)
242 PRK11022 dppD dipeptide transp 91.6 0.16 3.4E-06 47.8 3.2 28 54-81 31-58 (326)
243 cd03223 ABCD_peroxisomal_ALDP 91.6 0.18 3.9E-06 42.4 3.3 27 54-80 25-51 (166)
244 TIGR01184 ntrCD nitrate transp 91.6 0.17 3.8E-06 44.8 3.3 28 54-81 9-36 (230)
245 TIGR00972 3a0107s01c2 phosphat 91.6 0.17 3.8E-06 45.1 3.3 27 54-80 25-51 (247)
246 PRK13539 cytochrome c biogenes 91.6 0.18 3.9E-06 43.9 3.3 27 54-80 26-52 (207)
247 PF00448 SRP54: SRP54-type pro 91.6 0.19 4.2E-06 43.9 3.5 28 56-83 1-28 (196)
248 cd03301 ABC_MalK_N The N-termi 91.6 0.18 3.9E-06 43.8 3.3 27 54-80 24-50 (213)
249 TIGR01978 sufC FeS assembly AT 91.6 0.17 3.7E-06 44.8 3.3 26 54-79 24-49 (243)
250 TIGR03238 dnd_assoc_3 dnd syst 91.5 0.23 5E-06 49.4 4.3 37 38-74 9-50 (504)
251 PRK14974 cell division protein 91.5 0.39 8.4E-06 45.7 5.8 29 55-83 139-167 (336)
252 cd03245 ABCC_bacteriocin_expor 91.5 0.18 3.9E-06 44.0 3.3 27 54-80 28-54 (220)
253 cd03230 ABC_DR_subfamily_A Thi 91.5 0.18 4E-06 42.5 3.3 26 54-79 24-49 (173)
254 PF01695 IstB_IS21: IstB-like 91.5 0.34 7.4E-06 41.6 4.9 29 54-82 45-73 (178)
255 TIGR03410 urea_trans_UrtE urea 91.5 0.18 3.8E-06 44.4 3.2 28 54-81 24-51 (230)
256 TIGR02211 LolD_lipo_ex lipopro 91.5 0.18 4E-06 44.0 3.3 27 54-80 29-55 (221)
257 TIGR00635 ruvB Holliday juncti 91.4 0.3 6.6E-06 44.7 4.9 28 54-81 28-55 (305)
258 TIGR02770 nickel_nikD nickel i 91.4 0.18 3.9E-06 44.5 3.2 28 54-81 10-37 (230)
259 cd03270 ABC_UvrA_I The excisio 91.4 0.18 4E-06 44.7 3.3 24 54-77 19-42 (226)
260 PRK13541 cytochrome c biogenes 91.4 0.19 4.2E-06 43.2 3.3 27 54-80 24-50 (195)
261 cd03238 ABC_UvrA The excision 91.4 0.2 4.3E-06 43.1 3.3 24 54-77 19-42 (176)
262 TIGR02640 gas_vesic_GvpN gas v 91.4 0.29 6.2E-06 44.5 4.6 41 37-80 5-45 (262)
263 PRK10584 putative ABC transpor 91.4 0.19 4.2E-06 44.1 3.3 27 54-80 34-60 (228)
264 PRK14242 phosphate transporter 91.4 0.18 4E-06 45.0 3.3 27 54-80 30-56 (253)
265 COG1136 SalX ABC-type antimicr 91.3 0.15 3.3E-06 45.8 2.7 22 54-75 29-50 (226)
266 COG1126 GlnQ ABC-type polar am 91.3 0.19 4E-06 45.2 3.2 20 229-248 219-238 (240)
267 PRK13695 putative NTPase; Prov 91.3 0.2 4.3E-06 42.3 3.3 24 59-82 3-26 (174)
268 PRK00625 shikimate kinase; Pro 91.3 0.19 4.2E-06 43.1 3.2 24 58-81 2-25 (173)
269 cd03298 ABC_ThiQ_thiamine_tran 91.3 0.2 4.2E-06 43.5 3.3 27 54-80 22-48 (211)
270 cd03234 ABCG_White The White s 91.3 0.19 4.1E-06 44.2 3.2 28 54-81 31-58 (226)
271 PRK10463 hydrogenase nickel in 91.3 0.36 7.9E-06 45.0 5.2 36 47-82 95-130 (290)
272 cd03261 ABC_Org_Solvent_Resist 91.3 0.19 4.2E-06 44.4 3.3 27 54-80 24-50 (235)
273 PRK11248 tauB taurine transpor 91.3 0.19 4.2E-06 45.3 3.3 27 54-80 25-51 (255)
274 COG2805 PilT Tfp pilus assembl 91.3 0.18 4E-06 47.3 3.2 29 54-82 123-151 (353)
275 PRK10436 hypothetical protein; 91.3 0.17 3.6E-06 50.1 3.1 36 46-82 209-244 (462)
276 PRK13949 shikimate kinase; Pro 91.3 0.2 4.4E-06 42.5 3.2 24 58-81 3-26 (169)
277 cd02034 CooC The accessory pro 91.2 0.24 5.3E-06 39.6 3.5 25 59-83 2-26 (116)
278 cd03237 ABC_RNaseL_inhibitor_d 91.2 0.2 4.3E-06 45.2 3.3 26 55-80 24-49 (246)
279 PRK00279 adk adenylate kinase; 91.2 0.21 4.6E-06 43.7 3.4 24 58-81 2-25 (215)
280 PRK11629 lolD lipoprotein tran 91.2 0.2 4.3E-06 44.3 3.3 27 54-80 33-59 (233)
281 PRK14247 phosphate ABC transpo 91.2 0.2 4.3E-06 44.7 3.3 27 54-80 27-53 (250)
282 PRK14950 DNA polymerase III su 91.2 0.36 7.9E-06 49.1 5.6 57 25-83 8-65 (585)
283 PRK14532 adenylate kinase; Pro 91.2 0.18 4E-06 42.9 2.9 24 58-81 2-25 (188)
284 PRK08154 anaerobic benzoate ca 91.2 0.35 7.7E-06 45.1 5.1 47 34-80 107-157 (309)
285 PRK05537 bifunctional sulfate 91.1 0.19 4.2E-06 51.0 3.5 29 54-82 390-418 (568)
286 cd02026 PRK Phosphoribulokinas 91.1 0.19 4.1E-06 46.3 3.1 23 59-81 2-24 (273)
287 PF13086 AAA_11: AAA domain; P 91.1 0.28 6E-06 42.1 4.0 23 58-80 19-41 (236)
288 PRK13645 cbiO cobalt transport 91.1 0.19 4.1E-06 46.1 3.2 28 54-81 35-62 (289)
289 COG2274 SunT ABC-type bacterio 91.1 0.18 3.9E-06 52.5 3.3 32 54-85 497-528 (709)
290 cd03294 ABC_Pro_Gly_Bertaine T 91.1 0.21 4.5E-06 45.4 3.3 27 54-80 48-74 (269)
291 PRK10416 signal recognition pa 91.0 0.25 5.5E-06 46.5 4.0 29 55-83 113-141 (318)
292 cd03257 ABC_NikE_OppD_transpor 91.0 0.21 4.5E-06 43.7 3.2 27 54-80 29-55 (228)
293 PRK09087 hypothetical protein; 91.0 0.37 8E-06 43.0 4.8 25 55-79 43-67 (226)
294 PRK13540 cytochrome c biogenes 91.0 0.22 4.9E-06 43.0 3.4 27 54-80 25-51 (200)
295 PRK09493 glnQ glutamine ABC tr 91.0 0.21 4.7E-06 44.2 3.3 27 54-80 25-51 (240)
296 COG1493 HprK Serine kinase of 91.0 0.18 4E-06 47.0 2.9 23 57-79 146-168 (308)
297 PLN02165 adenylate isopentenyl 91.0 0.2 4.4E-06 47.5 3.2 32 50-81 37-68 (334)
298 PRK14248 phosphate ABC transpo 91.0 0.21 4.6E-06 45.2 3.3 27 54-80 45-71 (268)
299 PRK13538 cytochrome c biogenes 91.0 0.22 4.8E-06 43.1 3.3 28 54-81 25-52 (204)
300 PRK05342 clpX ATP-dependent pr 91.0 0.43 9.4E-06 46.6 5.6 25 56-80 108-132 (412)
301 cd03267 ABC_NatA_like Similar 90.9 0.21 4.7E-06 44.3 3.2 26 54-79 45-70 (236)
302 CHL00081 chlI Mg-protoporyphyr 90.9 0.36 7.9E-06 46.1 5.0 30 54-83 36-65 (350)
303 cd03214 ABC_Iron-Siderophores_ 90.9 0.23 5.1E-06 42.2 3.3 27 54-80 23-49 (180)
304 COG1123 ATPase components of v 90.9 0.16 3.5E-06 51.1 2.6 30 54-83 33-62 (539)
305 COG1936 Predicted nucleotide k 90.9 0.18 3.8E-06 43.7 2.5 19 59-77 3-21 (180)
306 PLN02348 phosphoribulokinase 90.9 0.35 7.6E-06 46.9 4.9 29 54-82 47-75 (395)
307 PRK06305 DNA polymerase III su 90.9 0.46 1E-05 46.8 5.8 57 24-82 8-65 (451)
308 PRK04220 2-phosphoglycerate ki 90.9 0.33 7.1E-06 45.5 4.5 27 54-80 90-116 (301)
309 cd03263 ABC_subfamily_A The AB 90.9 0.23 5E-06 43.3 3.3 27 54-80 26-52 (220)
310 PF14532 Sigma54_activ_2: Sigm 90.9 0.13 2.8E-06 41.9 1.6 26 54-79 19-44 (138)
311 cd03250 ABCC_MRP_domain1 Domai 90.9 0.23 5.1E-06 42.9 3.3 28 53-80 28-55 (204)
312 cd03222 ABC_RNaseL_inhibitor T 90.8 0.22 4.8E-06 42.8 3.1 27 54-80 23-49 (177)
313 cd03290 ABCC_SUR1_N The SUR do 90.8 0.23 5E-06 43.4 3.3 27 54-80 25-51 (218)
314 PRK00023 cmk cytidylate kinase 90.8 0.22 4.9E-06 44.3 3.3 26 56-81 4-29 (225)
315 TIGR01351 adk adenylate kinase 90.8 0.21 4.5E-06 43.6 3.0 22 59-80 2-23 (210)
316 PF08433 KTI12: Chromatin asso 90.8 0.23 5.1E-06 45.7 3.4 25 58-82 3-27 (270)
317 PRK10247 putative ABC transpor 90.8 0.24 5.1E-06 43.7 3.3 27 54-80 31-57 (225)
318 cd03215 ABC_Carb_Monos_II This 90.8 0.23 5E-06 42.3 3.2 27 54-80 24-50 (182)
319 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 90.8 0.23 4.9E-06 43.9 3.2 27 54-80 46-72 (224)
320 PF08477 Miro: Miro-like prote 90.8 0.24 5.3E-06 38.3 3.1 19 59-77 2-20 (119)
321 cd03247 ABCC_cytochrome_bd The 90.8 0.25 5.3E-06 41.9 3.3 27 54-80 26-52 (178)
322 PRK11247 ssuB aliphatic sulfon 90.8 0.23 5E-06 45.1 3.3 28 54-81 36-63 (257)
323 PRK14251 phosphate ABC transpo 90.7 0.24 5.1E-06 44.3 3.3 27 54-80 28-54 (251)
324 PRK14960 DNA polymerase III su 90.7 0.4 8.6E-06 49.6 5.3 55 24-82 6-63 (702)
325 TIGR00041 DTMP_kinase thymidyl 90.7 0.26 5.7E-06 42.0 3.5 26 57-82 4-29 (195)
326 cd03254 ABCC_Glucan_exporter_l 90.7 0.24 5.2E-06 43.5 3.3 27 54-80 27-53 (229)
327 cd03246 ABCC_Protease_Secretio 90.7 0.26 5.6E-06 41.6 3.4 27 54-80 26-52 (173)
328 cd03252 ABCC_Hemolysin The ABC 90.7 0.23 5.1E-06 43.8 3.3 28 54-81 26-53 (237)
329 TIGR01277 thiQ thiamine ABC tr 90.7 0.23 5E-06 43.3 3.2 27 54-80 22-48 (213)
330 PRK10646 ADP-binding protein; 90.7 0.57 1.2E-05 39.7 5.4 27 56-82 28-54 (153)
331 TIGR02323 CP_lyasePhnK phospho 90.7 0.23 4.9E-06 44.4 3.2 27 54-80 27-53 (253)
332 PRK14250 phosphate ABC transpo 90.7 0.24 5.2E-06 44.1 3.3 27 54-80 27-53 (241)
333 PRK06921 hypothetical protein; 90.7 0.5 1.1E-05 43.3 5.5 29 55-83 116-144 (266)
334 KOG3354|consensus 90.7 0.24 5.2E-06 42.5 3.1 26 57-82 13-38 (191)
335 TIGR02324 CP_lyasePhnL phospho 90.6 0.25 5.3E-06 43.3 3.3 28 54-81 32-59 (224)
336 PRK13648 cbiO cobalt transport 90.6 0.24 5.2E-06 44.9 3.3 27 54-80 33-59 (269)
337 PRK14963 DNA polymerase III su 90.6 0.38 8.2E-06 48.1 5.0 30 53-82 33-62 (504)
338 PRK07994 DNA polymerase III su 90.6 0.44 9.6E-06 49.1 5.5 55 24-82 7-64 (647)
339 cd03295 ABC_OpuCA_Osmoprotecti 90.6 0.25 5.4E-06 43.9 3.4 27 54-80 25-51 (242)
340 TIGR02538 type_IV_pilB type IV 90.6 0.2 4.4E-06 50.7 3.1 25 57-81 317-341 (564)
341 PRK10419 nikE nickel transport 90.6 0.24 5.1E-06 45.0 3.3 27 54-80 36-62 (268)
342 cd03232 ABC_PDR_domain2 The pl 90.6 0.24 5.2E-06 42.6 3.1 25 54-78 31-55 (192)
343 PRK14949 DNA polymerase III su 90.6 0.4 8.7E-06 51.1 5.3 55 24-82 7-64 (944)
344 COG2884 FtsE Predicted ATPase 90.6 0.22 4.7E-06 44.1 2.8 26 55-80 27-52 (223)
345 TIGR02858 spore_III_AA stage I 90.6 0.27 5.9E-06 45.3 3.6 43 41-83 96-138 (270)
346 PF13479 AAA_24: AAA domain 90.6 0.19 4.1E-06 44.2 2.5 22 55-76 2-23 (213)
347 PRK10744 pstB phosphate transp 90.6 0.24 5.2E-06 44.6 3.3 27 54-80 37-63 (260)
348 PRK14267 phosphate ABC transpo 90.6 0.25 5.3E-06 44.2 3.3 27 54-80 28-54 (253)
349 TIGR00101 ureG urease accessor 90.6 0.27 5.9E-06 43.0 3.5 25 58-82 3-27 (199)
350 PLN02796 D-glycerate 3-kinase 90.6 0.23 4.9E-06 47.5 3.2 24 59-82 103-126 (347)
351 PRK11264 putative amino-acid A 90.5 0.25 5.5E-06 44.0 3.3 27 54-80 27-53 (250)
352 PRK11300 livG leucine/isoleuci 90.5 0.24 5.2E-06 44.3 3.2 27 54-80 29-55 (255)
353 TIGR03005 ectoine_ehuA ectoine 90.5 0.25 5.4E-06 44.2 3.3 27 54-80 24-50 (252)
354 TIGR00073 hypB hydrogenase acc 90.5 0.38 8.2E-06 41.9 4.3 34 48-81 14-47 (207)
355 PRK14273 phosphate ABC transpo 90.5 0.25 5.5E-06 44.2 3.3 28 54-81 31-58 (254)
356 TIGR00017 cmk cytidylate kinas 90.5 0.27 5.8E-06 43.7 3.4 24 58-81 4-27 (217)
357 TIGR01189 ccmA heme ABC export 90.5 0.27 5.8E-06 42.4 3.3 27 54-80 24-50 (198)
358 PRK01184 hypothetical protein; 90.5 0.22 4.9E-06 42.2 2.8 18 58-75 3-20 (184)
359 cd03228 ABCC_MRP_Like The MRP 90.5 0.28 6E-06 41.3 3.4 27 54-80 26-52 (171)
360 PRK14255 phosphate ABC transpo 90.5 0.25 5.5E-06 44.1 3.3 26 54-79 29-54 (252)
361 cd03233 ABC_PDR_domain1 The pl 90.5 0.25 5.4E-06 42.9 3.1 28 54-81 31-58 (202)
362 PRK09435 membrane ATPase/prote 90.4 0.55 1.2E-05 44.6 5.6 41 43-83 42-83 (332)
363 PRK13632 cbiO cobalt transport 90.4 0.26 5.6E-06 44.8 3.3 27 54-80 33-59 (271)
364 PF13476 AAA_23: AAA domain; P 90.4 0.3 6.6E-06 41.0 3.5 27 55-81 18-44 (202)
365 COG2804 PulE Type II secretory 90.4 0.24 5.2E-06 49.3 3.2 40 43-83 246-285 (500)
366 TIGR03740 galliderm_ABC gallid 90.3 0.27 5.9E-06 43.1 3.3 27 54-80 24-50 (223)
367 cd00046 DEXDc DEAD-like helica 90.3 0.31 6.7E-06 37.5 3.3 26 58-83 2-27 (144)
368 cd03216 ABC_Carb_Monos_I This 90.3 0.28 6E-06 41.2 3.2 27 54-80 24-50 (163)
369 cd01128 rho_factor Transcripti 90.3 0.19 4.2E-06 45.7 2.4 35 47-81 7-41 (249)
370 TIGR02204 MsbA_rel ABC transpo 90.3 0.23 4.9E-06 49.8 3.1 30 53-82 363-392 (576)
371 PRK11174 cysteine/glutathione 90.3 0.18 4E-06 50.7 2.4 27 54-80 374-400 (588)
372 PLN02200 adenylate kinase fami 90.3 0.32 6.9E-06 43.7 3.7 27 55-81 42-68 (234)
373 cd03213 ABCG_EPDR ABCG transpo 90.3 0.27 5.9E-06 42.4 3.2 27 54-80 33-59 (194)
374 PRK14240 phosphate transporter 90.3 0.27 5.9E-06 43.8 3.3 26 54-79 27-52 (250)
375 cd03244 ABCC_MRP_domain2 Domai 90.2 0.28 6.2E-06 42.8 3.4 28 54-81 28-55 (221)
376 TIGR02203 MsbA_lipidA lipid A 90.2 0.23 4.9E-06 49.7 3.1 30 54-83 356-385 (571)
377 PRK06835 DNA replication prote 90.2 0.76 1.6E-05 43.5 6.4 29 55-83 182-210 (329)
378 PRK05428 HPr kinase/phosphoryl 90.2 0.25 5.4E-06 46.4 3.1 23 57-79 147-169 (308)
379 PRK10771 thiQ thiamine transpo 90.2 0.27 5.9E-06 43.4 3.2 27 54-80 23-49 (232)
380 PF12775 AAA_7: P-loop contain 90.2 0.58 1.3E-05 43.0 5.5 43 37-80 15-57 (272)
381 cd03249 ABC_MTABC3_MDL1_MDL2 M 90.2 0.27 5.8E-06 43.5 3.2 28 54-81 27-54 (238)
382 TIGR00968 3a0106s01 sulfate AB 90.2 0.28 6.1E-06 43.6 3.3 27 54-80 24-50 (237)
383 PRK05642 DNA replication initi 90.2 0.66 1.4E-05 41.5 5.7 26 57-82 46-71 (234)
384 PF01935 DUF87: Domain of unkn 90.2 0.32 6.9E-06 42.7 3.6 26 57-82 24-49 (229)
385 PRK05563 DNA polymerase III su 90.2 0.39 8.5E-06 48.6 4.7 56 25-83 8-65 (559)
386 PRK14269 phosphate ABC transpo 90.2 0.28 6.1E-06 43.8 3.3 27 54-80 26-52 (246)
387 COG4172 ABC-type uncharacteriz 90.2 0.23 4.9E-06 48.6 2.8 31 53-83 310-340 (534)
388 cd03231 ABC_CcmA_heme_exporter 90.2 0.28 6.2E-06 42.4 3.3 27 54-80 24-50 (201)
389 PRK13638 cbiO cobalt transport 90.2 0.26 5.6E-06 44.8 3.1 27 54-80 25-51 (271)
390 cd03283 ABC_MutS-like MutS-lik 90.2 0.25 5.3E-06 43.2 2.9 22 56-77 25-46 (199)
391 TIGR00064 ftsY signal recognit 90.1 0.35 7.6E-06 44.5 4.0 46 38-83 45-99 (272)
392 PRK10418 nikD nickel transport 90.1 0.28 6.1E-06 44.0 3.3 27 54-80 27-53 (254)
393 PRK10575 iron-hydroxamate tran 90.1 0.26 5.6E-06 44.6 3.1 27 54-80 35-61 (265)
394 PRK13646 cbiO cobalt transport 90.1 0.27 5.9E-06 45.1 3.2 28 54-81 31-58 (286)
395 PRK13975 thymidylate kinase; P 90.1 0.29 6.3E-06 41.7 3.2 25 57-81 3-27 (196)
396 PRK14274 phosphate ABC transpo 90.1 0.29 6.3E-06 44.0 3.3 27 54-80 36-62 (259)
397 PRK14237 phosphate transporter 90.0 0.29 6.3E-06 44.3 3.4 27 54-80 44-70 (267)
398 PRK14238 phosphate transporter 90.0 0.29 6.2E-06 44.5 3.3 28 54-81 48-75 (271)
399 PRK14959 DNA polymerase III su 90.0 0.48 1E-05 48.6 5.2 56 23-82 6-64 (624)
400 PRK06526 transposase; Provisio 90.0 0.31 6.7E-06 44.4 3.5 29 55-83 97-125 (254)
401 PRK14270 phosphate ABC transpo 90.0 0.3 6.4E-06 43.7 3.4 27 54-80 28-54 (251)
402 PRK14954 DNA polymerase III su 90.0 0.55 1.2E-05 48.2 5.6 57 24-82 7-64 (620)
403 PRK13543 cytochrome c biogenes 90.0 0.3 6.4E-06 42.7 3.3 27 54-80 35-61 (214)
404 PRK14239 phosphate transporter 90.0 0.29 6.3E-06 43.7 3.3 26 54-79 29-54 (252)
405 PRK10790 putative multidrug tr 90.0 0.21 4.5E-06 50.4 2.6 29 54-82 365-393 (592)
406 PRK10619 histidine/lysine/argi 90.0 0.29 6.4E-06 43.9 3.3 28 54-81 29-56 (257)
407 PRK09544 znuC high-affinity zi 90.0 0.3 6.4E-06 44.1 3.3 27 54-80 28-54 (251)
408 cd03248 ABCC_TAP TAP, the Tran 90.0 0.3 6.6E-06 42.8 3.3 27 54-80 38-64 (226)
409 PRK07952 DNA replication prote 90.0 0.61 1.3E-05 42.3 5.3 28 56-83 99-126 (244)
410 TIGR03771 anch_rpt_ABC anchore 90.0 0.3 6.5E-06 43.0 3.3 27 55-81 5-31 (223)
411 TIGR03411 urea_trans_UrtD urea 89.9 0.3 6.5E-06 43.3 3.3 27 54-80 26-52 (242)
412 PRK14241 phosphate transporter 89.9 0.29 6.3E-06 44.0 3.3 27 54-80 28-54 (258)
413 TIGR01288 nodI ATP-binding ABC 89.9 0.29 6.3E-06 45.3 3.3 27 54-80 28-54 (303)
414 TIGR01193 bacteriocin_ABC ABC- 89.9 0.22 4.8E-06 51.4 2.8 29 54-82 498-526 (708)
415 PRK11701 phnK phosphonate C-P 89.9 0.29 6.2E-06 44.0 3.2 27 54-80 30-56 (258)
416 COG1123 ATPase components of v 89.9 0.27 5.9E-06 49.4 3.3 29 54-82 315-343 (539)
417 TIGR00602 rad24 checkpoint pro 89.9 0.5 1.1E-05 48.7 5.2 59 23-81 74-135 (637)
418 PF04851 ResIII: Type III rest 89.9 0.72 1.6E-05 38.0 5.4 28 55-82 24-51 (184)
419 cd04163 Era Era subfamily. Er 89.9 0.3 6.5E-06 39.1 3.0 22 56-77 3-24 (168)
420 cd03273 ABC_SMC2_euk Eukaryoti 89.9 0.33 7.2E-06 43.5 3.6 26 56-81 25-50 (251)
421 PRK13768 GTPase; Provisional 89.9 0.34 7.3E-06 43.9 3.6 26 58-83 4-29 (253)
422 PRK13657 cyclic beta-1,2-gluca 89.9 0.22 4.7E-06 50.3 2.6 30 54-83 359-388 (588)
423 cd03264 ABC_drug_resistance_li 89.8 0.26 5.6E-06 42.8 2.8 23 58-80 27-49 (211)
424 PRK15056 manganese/iron transp 89.8 0.3 6.5E-06 44.4 3.3 27 54-80 31-57 (272)
425 cd03369 ABCC_NFT1 Domain 2 of 89.8 0.32 7E-06 42.1 3.3 28 54-81 32-59 (207)
426 PF13177 DNA_pol3_delta2: DNA 89.8 0.75 1.6E-05 38.8 5.5 35 51-85 14-48 (162)
427 PRK14262 phosphate ABC transpo 89.8 0.31 6.7E-06 43.5 3.3 27 54-80 27-53 (250)
428 COG4172 ABC-type uncharacteriz 89.8 0.21 4.6E-06 48.8 2.3 29 55-83 35-63 (534)
429 PRK14244 phosphate ABC transpo 89.8 0.32 6.9E-06 43.5 3.4 27 54-80 29-55 (251)
430 cd03217 ABC_FeS_Assembly ABC-t 89.8 0.32 6.9E-06 42.1 3.3 26 54-79 24-49 (200)
431 COG0703 AroK Shikimate kinase 89.8 0.42 9.1E-06 41.2 3.9 27 56-82 2-28 (172)
432 TIGR01242 26Sp45 26S proteasom 89.8 0.31 6.7E-06 46.3 3.4 27 55-81 155-181 (364)
433 PRK10895 lipopolysaccharide AB 89.8 0.32 6.9E-06 43.2 3.3 27 54-80 27-53 (241)
434 cd01876 YihA_EngB The YihA (En 89.8 0.26 5.7E-06 39.6 2.6 19 59-77 2-20 (170)
435 PRK11831 putative ABC transpor 89.8 0.3 6.6E-06 44.3 3.3 27 54-80 31-57 (269)
436 PRK09984 phosphonate/organopho 89.8 0.31 6.7E-06 43.9 3.2 27 54-80 28-54 (262)
437 PRK13548 hmuV hemin importer A 89.7 0.3 6.6E-06 44.0 3.2 27 54-80 26-52 (258)
438 PRK08451 DNA polymerase III su 89.7 0.64 1.4E-05 46.9 5.8 55 24-82 5-62 (535)
439 PRK14268 phosphate ABC transpo 89.7 0.31 6.8E-06 43.8 3.3 27 54-80 36-62 (258)
440 PRK14952 DNA polymerase III su 89.7 0.39 8.4E-06 49.0 4.3 54 25-82 5-61 (584)
441 cd03236 ABC_RNaseL_inhibitor_d 89.7 0.32 7E-06 44.1 3.4 36 48-83 18-53 (255)
442 PRK05439 pantothenate kinase; 89.7 0.58 1.3E-05 44.0 5.1 30 54-83 84-113 (311)
443 cd00267 ABC_ATPase ABC (ATP-bi 89.7 0.34 7.5E-06 40.0 3.3 25 54-78 23-47 (157)
444 PRK11144 modC molybdate transp 89.7 0.31 6.6E-06 46.3 3.3 27 54-80 22-48 (352)
445 PRK14265 phosphate ABC transpo 89.7 0.32 7E-06 44.4 3.3 27 54-80 44-70 (274)
446 COG1132 MdlB ABC-type multidru 89.7 0.25 5.3E-06 49.7 2.8 30 54-83 353-382 (567)
447 TIGR02237 recomb_radB DNA repa 89.7 0.42 9E-06 41.3 3.9 28 55-82 11-38 (209)
448 cd03112 CobW_like The function 89.6 0.27 6E-06 41.2 2.7 23 58-80 2-24 (158)
449 PRK14951 DNA polymerase III su 89.6 0.63 1.4E-05 47.8 5.7 55 24-82 7-64 (618)
450 cd03251 ABCC_MsbA MsbA is an e 89.6 0.33 7.2E-06 42.7 3.3 27 54-80 26-52 (234)
451 PRK12323 DNA polymerase III su 89.6 0.37 8.1E-06 49.7 4.1 55 24-82 7-64 (700)
452 PRK14235 phosphate transporter 89.6 0.33 7.2E-06 44.0 3.4 27 54-80 43-69 (267)
453 TIGR01188 drrA daunorubicin re 89.6 0.32 6.9E-06 45.0 3.3 28 54-81 17-44 (302)
454 PRK14256 phosphate ABC transpo 89.6 0.33 7.1E-06 43.4 3.3 27 54-80 28-54 (252)
455 cd03221 ABCF_EF-3 ABCF_EF-3 E 89.6 0.33 7.2E-06 39.9 3.1 26 54-79 24-49 (144)
456 PRK00080 ruvB Holliday junctio 89.6 0.57 1.2E-05 43.8 5.0 28 54-81 49-76 (328)
457 PRK14965 DNA polymerase III su 89.6 0.66 1.4E-05 47.2 5.8 54 25-82 8-64 (576)
458 PRK14259 phosphate ABC transpo 89.6 0.33 7.1E-06 44.1 3.3 27 54-80 37-63 (269)
459 TIGR00362 DnaA chromosomal rep 89.5 0.71 1.5E-05 44.5 5.8 27 57-83 137-163 (405)
460 PRK13649 cbiO cobalt transport 89.5 0.32 6.9E-06 44.3 3.2 27 54-80 31-57 (280)
461 PRK14260 phosphate ABC transpo 89.5 0.34 7.3E-06 43.7 3.3 27 54-80 31-57 (259)
462 PRK14732 coaE dephospho-CoA ki 89.5 0.37 8E-06 42.1 3.5 48 59-108 2-54 (196)
463 PRK08691 DNA polymerase III su 89.5 0.5 1.1E-05 49.1 4.9 55 24-82 7-64 (709)
464 CHL00181 cbbX CbbX; Provisiona 89.5 0.36 7.8E-06 44.7 3.6 26 58-83 61-86 (287)
465 PRK14263 phosphate ABC transpo 89.5 0.34 7.3E-06 43.9 3.3 27 54-80 32-58 (261)
466 cd03253 ABCC_ATM1_transporter 89.5 0.34 7.4E-06 42.7 3.3 28 54-81 25-52 (236)
467 PLN02318 phosphoribulokinase/u 89.5 0.5 1.1E-05 48.4 4.8 42 40-81 48-90 (656)
468 COG4778 PhnL ABC-type phosphon 89.4 0.3 6.5E-06 42.7 2.7 23 54-76 35-57 (235)
469 CHL00131 ycf16 sulfate ABC tra 89.4 0.33 7.1E-06 43.3 3.2 26 54-79 31-56 (252)
470 COG4619 ABC-type uncharacteriz 89.4 0.29 6.3E-06 42.7 2.7 26 55-80 28-53 (223)
471 cd01394 radB RadB. The archaea 89.4 0.44 9.5E-06 41.5 3.9 37 47-83 8-46 (218)
472 PRK12339 2-phosphoglycerate ki 89.3 0.39 8.5E-06 42.0 3.5 25 56-80 3-27 (197)
473 TIGR02769 nickel_nikE nickel i 89.3 0.35 7.6E-06 43.7 3.3 27 54-80 35-61 (265)
474 PRK03695 vitamin B12-transport 89.3 0.32 6.9E-06 43.6 3.0 27 54-80 20-46 (248)
475 PRK14243 phosphate transporter 89.3 0.36 7.8E-06 43.7 3.4 27 54-80 34-60 (264)
476 PRK14272 phosphate ABC transpo 89.3 0.36 7.8E-06 43.0 3.3 27 54-80 28-54 (252)
477 PRK07429 phosphoribulokinase; 89.3 0.32 6.9E-06 46.0 3.1 26 56-81 8-33 (327)
478 PRK10851 sulfate/thiosulfate t 89.3 0.34 7.3E-06 46.2 3.3 27 54-80 26-52 (353)
479 PRK14253 phosphate ABC transpo 89.3 0.36 7.9E-06 43.0 3.3 27 54-80 27-53 (249)
480 PRK07003 DNA polymerase III su 89.3 0.56 1.2E-05 49.2 5.0 55 24-82 7-64 (830)
481 PRK09580 sufC cysteine desulfu 89.3 0.33 7.1E-06 43.2 3.0 26 54-79 25-50 (248)
482 PRK10253 iron-enterobactin tra 89.2 0.33 7.2E-06 43.9 3.1 27 54-80 31-57 (265)
483 PRK15112 antimicrobial peptide 89.2 0.35 7.7E-06 43.8 3.3 27 54-80 37-63 (267)
484 PRK14526 adenylate kinase; Pro 89.2 0.35 7.7E-06 42.8 3.2 22 59-80 3-24 (211)
485 PF01591 6PF2K: 6-phosphofruct 89.2 0.47 1E-05 42.5 4.0 29 56-84 12-40 (222)
486 cd01673 dNK Deoxyribonucleosid 89.2 0.36 7.9E-06 41.1 3.2 22 59-80 2-23 (193)
487 PRK13547 hmuV hemin importer A 89.2 0.35 7.6E-06 44.2 3.2 27 54-80 25-51 (272)
488 TIGR02857 CydD thiol reductant 89.2 0.25 5.5E-06 49.0 2.4 28 54-81 346-373 (529)
489 COG3839 MalK ABC-type sugar tr 89.2 0.28 6.1E-06 46.7 2.6 20 57-76 30-49 (338)
490 KOG0056|consensus 89.2 0.36 7.8E-06 48.3 3.4 32 54-85 562-593 (790)
491 PRK09111 DNA polymerase III su 89.2 0.63 1.4E-05 47.6 5.3 58 24-83 15-73 (598)
492 PRK13639 cbiO cobalt transport 89.2 0.35 7.7E-06 44.1 3.2 27 54-80 26-52 (275)
493 TIGR03878 thermo_KaiC_2 KaiC d 89.1 0.44 9.6E-06 43.3 3.8 28 55-82 35-62 (259)
494 PRK08699 DNA polymerase III su 89.1 0.63 1.4E-05 43.9 4.9 39 45-83 8-48 (325)
495 TIGR00152 dephospho-CoA kinase 89.1 0.5 1.1E-05 40.4 3.9 46 59-106 2-53 (188)
496 COG1131 CcmA ABC-type multidru 89.0 0.37 8.1E-06 44.7 3.3 29 54-82 29-57 (293)
497 PRK14493 putative bifunctional 89.0 0.44 9.6E-06 44.0 3.7 27 58-84 3-29 (274)
498 PRK13631 cbiO cobalt transport 89.0 0.37 8E-06 45.2 3.3 28 54-81 50-77 (320)
499 cd02022 DPCK Dephospho-coenzym 89.0 0.36 7.7E-06 41.1 2.9 20 59-78 2-21 (179)
500 PTZ00088 adenylate kinase 1; P 89.0 0.38 8.2E-06 43.2 3.2 25 57-81 7-31 (229)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=8.5e-100 Score=785.17 Aligned_cols=269 Identities=52% Similarity=0.814 Sum_probs=247.1
Q ss_pred CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
||+|.+|||||||+.+|+|+.++++.|+++++.++||||||||+.||+.|...++||||||||||||||||++|.|||||
T Consensus 97 TYSGlvLIAvNPy~~L~iYt~d~i~~Y~~K~r~el~PHvfAIAe~aY~~lls~~eNQtIiISGESGAGKTe~aK~ImqYl 176 (1463)
T COG5022 97 TYSGLVLIAVNPYRDLGIYTDDIIQSYSGKNRLELEPHVFAIAEEAYRNLLSEKENQTIIISGESGAGKTENAKRIMQYL 176 (1463)
T ss_pred EEeeeEEEEecCcccCCCccHHHHHHhccCccccCCchHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCC---cchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCCc
Q psy17386 81 CSVTSNV---STWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERN 157 (276)
Q Consensus 81 ~~~~~~~---~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~Ern 157 (276)
+.++++. .+.++++|+++||||||||||||++||||||||||++|.||.+|.|+||+|.+|||||||||+|+.+|||
T Consensus 177 asv~~s~~~~~~~iE~~ILaTNPILEAFGNAkTvRNdNSSRFGKyikI~Fd~~g~I~GA~I~~YLLEKSRVV~Q~~~ERN 256 (1463)
T COG5022 177 ASVTSSSTVEISSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYIKIEFDENGEICGAKIETYLLEKSRVVHQNKNERN 256 (1463)
T ss_pred HHhccCCcchHHHHHHHHHhcchHHHHhccccccccCCcccccceEEEEECCCCceechhhhhhhhhhhhhccCCCCccc
Confidence 9998754 3578899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhcccChhHH--------HHcc-----------------------------CCChhh---------------
Q psy17386 158 YHVFYQLVEAAQYSSSIN--------KEIM-----------------------------HYTSEE--------------- 185 (276)
Q Consensus 158 fHIFYqllaG~~~~~~l~--------~~~~-----------------------------~~~~~d--------------- 185 (276)
|||||||++|.+. .++ ++|. |++.++
T Consensus 257 YHIFYQll~G~~~--~~k~~~~~~~~~dY~Yl~~~~~~~I~gIdD~kefk~t~~AlktiGi~~eeq~~IF~iLAaILhiG 334 (1463)
T COG5022 257 YHIFYQLLAGDPE--ELKKLLLLQNPKDYIYLSQGGCDKIDGIDDAKEFKITLDALKTIGIDEEEQDQIFKILAAILHIG 334 (1463)
T ss_pred hhhhhhHhcCChH--HHHHHhhccChHhhHhHhhcCCCcCCCcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhc
Confidence 9999999999442 222 2222 222221
Q ss_pred -------------------------------------------------------------hhhh------hhHHHHHHH
Q psy17386 186 -------------------------------------------------------------KSHV------IWVFAWLVN 198 (276)
Q Consensus 186 -------------------------------------------------------------~rda------~~LF~wlv~ 198 (276)
.||| ++||+|||+
T Consensus 335 NIef~~~r~g~a~~~~~~~~~~~c~LLgId~~~f~k~lvk~~ikt~~E~i~~~~n~~QA~~irdslAK~lY~~lFdwiV~ 414 (1463)
T COG5022 335 NIEFKEDRNGAAIFSDNSVLDKACYLLGIDPSLFVKWLVKRQIKTGGEWIVVPLNLEQALAIRDSLAKALYSNLFDWIVD 414 (1463)
T ss_pred ceeeeecccchhhcCCchHHHHHHHHhCCCHHHHHHHHHHhHhhcCceEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555 999999999
Q ss_pred HhhhccCCCCCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCC-----------Cchh
Q psy17386 199 HINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIK-----------PRLE 267 (276)
Q Consensus 199 ~iN~~l~~~~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~-----------~~~~ 267 (276)
+||.+|..+....+|||||||||||+|+.|||||||||||||||||+||+|||++|||||.+||| ||+|
T Consensus 415 rIN~sL~~~~~~~~fIGVLDIyGFEiFEkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~Idy~DnQ~~ID 494 (1463)
T COG5022 415 RINKSLDHSAAASNFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCID 494 (1463)
T ss_pred HHHhhccCccccccceeEEeecchhhhccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCcchhH
Confidence 99999986666789999999999999999999999999999999999999999999999999965 6689
Q ss_pred hhhh
Q psy17386 268 LTES 271 (276)
Q Consensus 268 ~~~~ 271 (276)
|||+
T Consensus 495 LIE~ 498 (1463)
T COG5022 495 LIEK 498 (1463)
T ss_pred HHhc
Confidence 9998
No 2
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=5.8e-97 Score=755.93 Aligned_cols=266 Identities=40% Similarity=0.598 Sum_probs=241.5
Q ss_pred CcccCeEEEecCCCCCCCCCHHHHHHhhcC-cCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGA-KMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~-~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~y 79 (276)
||+|++||+||||+.+|+|+++++++|+++ ...++|||||+||+.||+.|+..++||||||||||||||||++|++|+|
T Consensus 127 Ty~G~iLIavNPyk~l~~y~~~~~~~Y~~~~~~~~lpPHifavA~~Ay~~m~~~~~~QsIiiSGESGAGKTe~tK~im~y 206 (821)
T PTZ00014 127 TTADPLLVAINPFKDLGNTTNDWIRRYRDAKDSDKLPPHVFTTARRALENLHGVKKSQTIIVSGESGAGKTEATKQIMRY 206 (821)
T ss_pred eeECCEEEEECCCCCCCCCcHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHHHHHHHH
Confidence 899999999999999999999999999986 5678999999999999999999999999999999999999999999999
Q ss_pred HHhhccCC-cchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCCch
Q psy17386 80 LCSVTSNV-STWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNY 158 (276)
Q Consensus 80 L~~~~~~~-~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~Ernf 158 (276)
|+..+++. ...++++|++++|||||||||||.+|+||||||||++|+|+.+|.|+||+|.+||||||||++|++|||||
T Consensus 207 la~~~~~~~~~~ie~~Il~sNpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~YLLEKSRVv~q~~gERNf 286 (821)
T PTZ00014 207 FASSKSGNMDLKIQNAIMAANPVLEAFGNAKTIRNNNSSRFGRFMQLQLGEEGGIRYGSIVAFLLEKSRVVTQEDDERSY 286 (821)
T ss_pred HHHhccCCCcccHHHHHHHHHHHHHHhhccCcCCCCCcCcceeEEEEEEcCCCcEeeEEEEEEeccCceeeecCCCCCCE
Confidence 99987643 35799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccChh--HH----HHcc----------------------------CCChhh-------------------
Q psy17386 159 HVFYQLVEAAQYSSS--IN----KEIM----------------------------HYTSEE------------------- 185 (276)
Q Consensus 159 HIFYqllaG~~~~~~--l~----~~~~----------------------------~~~~~d------------------- 185 (276)
|||||||+|++++.. +. +.|+ +|+++|
T Consensus 287 HIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~dD~~~f~~~~~A~~~lg~s~~e~~~If~ilaaILhLGNi~F 366 (821)
T PTZ00014 287 HIFYQLLKGANDEMKEKYKLKSLEEYKYINPKCLDVPGIDDVKDFEEVMESFDSMGLSESQIEDIFSILSGVLLLGNVEI 366 (821)
T ss_pred eHHHHHHhCCCHHHHHHcCCCChHhccccCCCCccCCCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeE
Confidence 999999999975321 00 1121 111111
Q ss_pred ---------------------------------------------------------------hhhh------hhHHHHH
Q psy17386 186 ---------------------------------------------------------------KSHV------IWVFAWL 196 (276)
Q Consensus 186 ---------------------------------------------------------------~rda------~~LF~wl 196 (276)
+||| ++||+||
T Consensus 367 ~~~~~~~~~~~~~i~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~i~~~~~~~qA~~~rdalaK~lY~rLF~wi 446 (821)
T PTZ00014 367 EGKEEGGLTDAAAISDESLEVFNEACELLFLDYESLKKELTVKVTYAGNQKIEGPWSKDESEMLKDSLSKAVYEKLFLWI 446 (821)
T ss_pred eccccCCCCCceeccCCCHHHHHHHHHHhCCCHHHHHHHhhceEEEeCCeeEecCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3565 9999999
Q ss_pred HHHhhhccCCCCCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCch
Q psy17386 197 VNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPRL 266 (276)
Q Consensus 197 v~~iN~~l~~~~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~~ 266 (276)
|++||++|.+......+||||||||||+|+.|||||||||||||||||+|+++||+.||+||++|||+|.
T Consensus 447 V~~IN~~l~~~~~~~~~IGiLDI~GFE~f~~NSfEQLcINy~NEkLQq~F~~~vF~~EqeeY~~EgI~~~ 516 (821)
T PTZ00014 447 IRNLNATIEPPGGFKVFIGMLDIFGFEVFKNNSLEQLFINITNEMLQKNFVDIVFERESKLYKDEGISTE 516 (821)
T ss_pred HHHHHHHhcCCcccCceEEEEecccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCC
Confidence 9999999987766778999999999999999999999999999999999999999999999999999883
No 3
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=1.6e-95 Score=737.55 Aligned_cols=265 Identities=49% Similarity=0.819 Sum_probs=242.5
Q ss_pred CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
||+|++||+||||+.+|+|+++++++|+++...++|||||+||+.||+.|+.+++||||||||||||||||++|+||+||
T Consensus 31 T~~G~iLiavNPyk~l~~Y~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiiSGESGaGKTes~K~i~~yL 110 (691)
T cd01380 31 TYSGIVLVAINPYARLPIYGEEIIQAYSGQRKGELDPHIFAIAEEAYKQMTRDEKNQSIIVSGESGAGKTVSAKYIMRYF 110 (691)
T ss_pred EeECCEEEEeCCCCCCCcCCHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCC-----cchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCC
Q psy17386 81 CSVTSNV-----STWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGE 155 (276)
Q Consensus 81 ~~~~~~~-----~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~E 155 (276)
+.++++. ...++++|++++|||||||||||.+|+||||||||++|+|+.+|+|+||+|.+||||||||+.|++||
T Consensus 111 a~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~f~~~g~i~Ga~i~~yLLEksRv~~~~~gE 190 (691)
T cd01380 111 ASVGGSDSREVSETQVEEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIQILFDKRGRIIGANMRTYLLEKSRVVFQAPGE 190 (691)
T ss_pred HHhcCCCcccccccCHHHHHHHHHHHHHHhhcCCCCCCCCccccceEEEEEECCCCCEEEEEEEEeeccccceeecCCCC
Confidence 9998653 35789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHhhcccChh--HH----HHcc-----------------------------CCChhh---------------
Q psy17386 156 RNYHVFYQLVEAAQYSSS--IN----KEIM-----------------------------HYTSEE--------------- 185 (276)
Q Consensus 156 rnfHIFYqllaG~~~~~~--l~----~~~~-----------------------------~~~~~d--------------- 185 (276)
||||||||||+|+++++. +. +.|+ +|++++
T Consensus 191 rnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~~d~~~f~~~~~al~~lg~s~~e~~~I~~iLaaILhLG 270 (691)
T cd01380 191 RNYHIFYQLCAGAPSQELKELHLGHADKFNYLNQGGAPTIEGVDDAEDFNATVQALTLLGISEEQQMDIFKLLAALLHLG 270 (691)
T ss_pred ChhHHHHHHHhCCCHHHHHHhCCCCHHHCccccCCCCccCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc
Confidence 999999999999874321 00 1121 222111
Q ss_pred --------------------------------------------------------------hhhh------hhHHHHHH
Q psy17386 186 --------------------------------------------------------------KSHV------IWVFAWLV 197 (276)
Q Consensus 186 --------------------------------------------------------------~rda------~~LF~wlv 197 (276)
+||| ++||+|||
T Consensus 271 ni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~i~~~~~~~qA~~~rdalak~lY~~LF~wiV 350 (691)
T cd01380 271 NIEIEATRNDSSSISPKDENLQIACELLGVDASDLRKWLVKRQIVTRSEKIVKPLTKEQAIVARDALAKHIYSKLFDWIV 350 (691)
T ss_pred ceeeeccCCccceecCChHHHHHHHHHhCCCHHHHHHHHHhCEEEECCeeEEecCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4565 99999999
Q ss_pred HHhhhccCCC---CCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCc
Q psy17386 198 NHINTCTNPG---QDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPR 265 (276)
Q Consensus 198 ~~iN~~l~~~---~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~ 265 (276)
++||+++.+. .....+||||||||||+|+.||||||||||||||||++|++++|+.||++|++|||+|
T Consensus 351 ~~iN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~iF~~eq~~Y~~EgI~~ 421 (691)
T cd01380 351 DVINKSLNTGEVKKKQTSFIGVLDIYGFETFEKNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEW 421 (691)
T ss_pred HHHHHHhCcCcccCCccceEEEEecCcccccCCCCHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999876 4567899999999999999999999999999999999999999999999999999998
No 4
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=1.7e-95 Score=737.52 Aligned_cols=267 Identities=52% Similarity=0.791 Sum_probs=244.2
Q ss_pred CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
||+|++||+||||+.+|+|++++++.|+++...++|||||++|+.||+.|...++||||||||||||||||++|+||+||
T Consensus 36 T~~G~iLIavNP~k~l~ly~~~~~~~Y~~~~~~~~~PHiyaiA~~Ay~~m~~~~~~QsIiiSGESGAGKTes~K~il~yL 115 (693)
T cd01377 36 TYSGLFCVAVNPYKRLPIYTEEVVEMYRGKKREEMPPHIFAIADNAYRSMLQDRENQSILITGESGAGKTENTKKVIQYL 115 (693)
T ss_pred EeecceeEeecCCccCCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCC---------cchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeeccccccccc
Q psy17386 81 CSVTSNV---------STWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQ 151 (276)
Q Consensus 81 ~~~~~~~---------~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~ 151 (276)
+.++++. ...++++|++++|||||||||||.+|+||||||||++|+|+.+|+|+||+|.+||||||||+.|
T Consensus 116 a~~~~~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~~g~i~Ga~i~~yLLEksRVv~q 195 (693)
T cd01377 116 ASVAASSKKKKQSGKGQGTLEDQILQANPILEAFGNAKTVRNDNSSRFGKFIRIHFGNTGKIAGADIETYLLEKSRVVFQ 195 (693)
T ss_pred HhhcCCCCcccccccccccHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEEECCCCCEEEEEEEEEecccCceeec
Confidence 9997643 2468999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHhhcccChh----HH---HHcc----------------------------CCChhh-----------
Q psy17386 152 SPGERNYHVFYQLVEAAQYSSS----IN---KEIM----------------------------HYTSEE----------- 185 (276)
Q Consensus 152 ~~~ErnfHIFYqllaG~~~~~~----l~---~~~~----------------------------~~~~~d----------- 185 (276)
++||||||||||||+|++++.. |. +.|+ ||++++
T Consensus 196 ~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~~y~yL~~~~~~~~~~~d~~~f~~~~~al~~lG~~~~e~~~i~~iLaaI 275 (693)
T cd01377 196 ASGERNYHIFYQLLSGADPELKSMLLLTGNPNDYRYLSQGELTIPGVDDAEEFKLTDEAFDILGFSDEEKNSIFKIVAAI 275 (693)
T ss_pred CCCCCcHHHHHHHHcCCCHHHHHHcCCCCchhcCeeeCCCCccCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999874321 00 1111 222211
Q ss_pred ------------------------------------------------------------------hhhh------hhHH
Q psy17386 186 ------------------------------------------------------------------KSHV------IWVF 193 (276)
Q Consensus 186 ------------------------------------------------------------------~rda------~~LF 193 (276)
+||| ++||
T Consensus 276 LhLGni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~i~~~~~~~~A~~~rDalak~lY~~LF 355 (693)
T cd01377 276 LHLGNIKFKQRQREEQAELDGTEEADKAAHLLGVNSADLLKALLHPRIKVGREWVTKGQNVEQVSFSVGALAKALYERLF 355 (693)
T ss_pred HhhcceEEEecCCCCccccCChHHHHHHHHHhCCCHHHHHHHhcceEEEECCeeEeeCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4565 9999
Q ss_pred HHHHHHhhhccCCCCCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCchh
Q psy17386 194 AWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPRLE 267 (276)
Q Consensus 194 ~wlv~~iN~~l~~~~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~~~ 267 (276)
+|||++||++|.+..+...+||||||||||+|+.||||||||||||||||++|++++|+.||++|++|||+|..
T Consensus 356 ~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~ 429 (693)
T cd01377 356 LWLVKRINKTLDTKQQRAYFIGVLDIAGFEIFDFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTF 429 (693)
T ss_pred HHHHHHHHHHhCCCCCCCceEEEEecccccccCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 99999999999887778899999999999999999999999999999999999999999999999999998854
No 5
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=3.9e-95 Score=732.33 Aligned_cols=264 Identities=50% Similarity=0.843 Sum_probs=241.6
Q ss_pred CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
||+|++||+||||+.+|+|+++.++.|+++...++|||||++|+.||+.|+.+++||||||||||||||||++|++|+||
T Consensus 31 T~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTes~K~i~~yL 110 (671)
T cd01381 31 TYTGSILVAVNPYQILPIYTADEIKLYKNKSIGELPPHIFAISDNAYTNMQREKKNQCIIISGESGAGKTESTKLILQYL 110 (671)
T ss_pred EeeCCEEEEeCCCccCCCCCHHHHHHHhcCCccccCCCHHHHHHHHHHHHHHcCCCceEEEEcCCCCCeehHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCcchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCCchHH
Q psy17386 81 CSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHV 160 (276)
Q Consensus 81 ~~~~~~~~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~ErnfHI 160 (276)
+.+++. .+.++++|++++|||||||||||.+|+||||||||++|+|+.+|+|+||+|.+||||||||+.|++|||||||
T Consensus 111 a~~s~~-~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~F~~~g~i~Ga~i~~yLLEksRV~~q~~gERnfHI 189 (671)
T cd01381 111 AAISGK-HSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNKRGAIEGAKIEQYLLEKSRIVRQARDERNYHI 189 (671)
T ss_pred HHhcCC-CCcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEEECCCCcEEEEEEEEEeccCCceeecCCCCCcHHH
Confidence 998764 3568999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccChh----HH--HHcc-----------------------------CCChhh--------------------
Q psy17386 161 FYQLVEAAQYSSS----IN--KEIM-----------------------------HYTSEE-------------------- 185 (276)
Q Consensus 161 FYqllaG~~~~~~----l~--~~~~-----------------------------~~~~~d-------------------- 185 (276)
|||||+|+++++. |. +.|+ ||++++
T Consensus 190 FYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~al~~lG~~~~e~~~i~~ilaaILhLGni~F~ 269 (671)
T cd01381 190 FYCMLAGLSTDEKERLKLGEASDYHYLAQGGCITCEGRDDAKDFADIRSAMKVLMFTDQEIWEIFKLLAAILHIGNLRFE 269 (671)
T ss_pred HHHHHcCCCHHHHHHcCCCChhhceeecCCCCccCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEe
Confidence 9999999874321 00 1121 222111
Q ss_pred -----------------------------------------------------------hhhh------hhHHHHHHHHh
Q psy17386 186 -----------------------------------------------------------KSHV------IWVFAWLVNHI 200 (276)
Q Consensus 186 -----------------------------------------------------------~rda------~~LF~wlv~~i 200 (276)
+||| ++||+|||.+|
T Consensus 270 ~~~~~~~~~~~i~~~~~l~~~a~LLgv~~~~L~~~lt~~~~~~~~e~i~~~~~~~qA~~~rdalak~lY~~lF~wiV~~I 349 (671)
T cd01381 270 ATEVDNLAACEVDDTPNLQRVAQLLGVPIQDLMDALTSRTIFTRGETVVTPLSREQAVDVRDAFVKGIYGRLFVWIVRKI 349 (671)
T ss_pred eccCCCCCceeeCChHHHHHHHHHhCCCHHHHhhhhceEEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4565 99999999999
Q ss_pred hhccCCC-CCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCc
Q psy17386 201 NTCTNPG-QDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPR 265 (276)
Q Consensus 201 N~~l~~~-~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~ 265 (276)
|++|.++ .....+||||||||||+|+.||||||||||||||||++|++++|+.||++|++|||+|
T Consensus 350 N~~l~~~~~~~~~~IgiLDIfGFE~f~~NsfEQLcINy~NEkLQ~~f~~~vf~~eq~eY~~EgI~~ 415 (671)
T cd01381 350 NAAIYKPVQQSRNSIGVLDIFGFENFDVNSFEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINW 415 (671)
T ss_pred HHHhcCccccccceEEEEecCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 9999755 4567899999999999999999999999999999999999999999999999999998
No 6
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=8.3e-94 Score=722.46 Aligned_cols=265 Identities=51% Similarity=0.789 Sum_probs=241.0
Q ss_pred CcccCeEEEecCCCCCC-CCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386 1 TYTGTILVAVNPYKELD-IYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 1 Ty~G~~LiavNP~~~l~-~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~y 79 (276)
||+|++||+||||+.+| +|+++.++.|+++...++|||||+||++||+.|+.+++||||||||||||||||++|++|+|
T Consensus 32 T~~G~iLiavNPyk~l~~iy~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~y 111 (674)
T cd01384 32 TYTGNILIAVNPFQRLPHLYDVHMMEQYKGAALGELSPHVFAIADAAYRAMINEGKSQSILVSGESGAGKTETTKMLMRY 111 (674)
T ss_pred eeECCEEEEECCCCcCCcCCCHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHcCCCceEEEECCCCCCchhHHHHHHHH
Confidence 89999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCC---cchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCC
Q psy17386 80 LCSVTSNV---STWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGER 156 (276)
Q Consensus 80 L~~~~~~~---~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~Er 156 (276)
|+.+++.. ...++++|++++|||||||||||.+|+||||||||++|+|+.+|+|+||+|.+||||||||++|++|||
T Consensus 112 La~~~~~~~~~~~~i~~~il~~npiLEAFGNAkT~~N~NSSRFGK~~~l~f~~~g~i~Ga~i~~yLLEksRv~~~~~gEr 191 (674)
T cd01384 112 LAYMGGRAGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDDYGRISGAAIRTYLLERSRVCQISDPER 191 (674)
T ss_pred HHhhcCCCCcccccHHHHHHHHHHHHHHhhCCCCCCCCCcchhheeEEEEECCCCcEEEEEEEEEecccCceeecCCCCC
Confidence 99987643 346899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHhhcccChh----HH--HHcc-----------------------------CCChhh----------------
Q psy17386 157 NYHVFYQLVEAAQYSSS----IN--KEIM-----------------------------HYTSEE---------------- 185 (276)
Q Consensus 157 nfHIFYqllaG~~~~~~----l~--~~~~-----------------------------~~~~~d---------------- 185 (276)
|||||||||+| ++++. |. +.|+ ||++++
T Consensus 192 nfHIFYqLl~g-~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~D~~~f~~~~~al~~lG~~~~e~~~I~~iLaaILhLGn 270 (674)
T cd01384 192 NYHCFYQLCAA-PPEDVKKYKLGDPKEFHYLNQSNCFELDGVDDAEEYLATRRAMDVVGISEEEQDAIFRVVAAILHLGN 270 (674)
T ss_pred chhHHHHHHcC-CHHHHHHcCCCChHhCccccCCCCccccccchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccc
Confidence 99999999999 43210 00 1111 111111
Q ss_pred ----------------------------------------------------------------hhhh------hhHHHH
Q psy17386 186 ----------------------------------------------------------------KSHV------IWVFAW 195 (276)
Q Consensus 186 ----------------------------------------------------------------~rda------~~LF~w 195 (276)
+||| ++||+|
T Consensus 271 i~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~i~~~~~~~~a~~~rdalak~lY~~LF~w 350 (674)
T cd01384 271 IEFAKGEEIDSSVLKDEKSEFHLKTAAELLMCDEKALEDALCKRVMVTPEEVITKPLDPDSAELSRDALAKTIYSRLFDW 350 (674)
T ss_pred eeeeccCCCCcccccCcccHHHHHHHHHHhCCCHHHHHHHhcccEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555 999999
Q ss_pred HHHHhhhccCCCCCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCch
Q psy17386 196 LVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPRL 266 (276)
Q Consensus 196 lv~~iN~~l~~~~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~~ 266 (276)
||.+||+++.+......+||||||||||+|+.||||||||||||||||++|++++|+.||++|++|||+|.
T Consensus 351 iV~~iN~~l~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~eq~eY~~EgI~~~ 421 (674)
T cd01384 351 LVNKINSSIGQDPDSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWS 421 (674)
T ss_pred HHHHHHHHhcCCCCCCeEEEEEecccccccCcCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 99999999987766778999999999999999999999999999999999999999999999999999984
No 7
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=1e-93 Score=722.53 Aligned_cols=263 Identities=46% Similarity=0.786 Sum_probs=240.4
Q ss_pred CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
||+|++||+||||+.+|+|+++.++.|+++...++|||||+||+.||+.|+.+++||||||||||||||||++|++|+||
T Consensus 32 T~~G~iLiavNP~k~l~ly~~~~~~~Y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl 111 (677)
T cd01387 32 TYIGSILVSVNPYKMFPIYGPEQVQQYAGRALGENPPHLFAIANLAFAKMLDAKQNQCVIISGESGSGKTEATKLILRYL 111 (677)
T ss_pred EeECCEEEEECCCCCCCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCeehHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCcchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCCchHH
Q psy17386 81 CSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHV 160 (276)
Q Consensus 81 ~~~~~~~~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~ErnfHI 160 (276)
+.++++.+..++++|++++|||||||||||.+|+||||||||++|+|+ +|.|+||+|.+||||||||+.|++|||||||
T Consensus 112 ~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~~~l~f~-~g~i~Ga~i~~yLLEksRvv~q~~gErnfHI 190 (677)
T cd01387 112 AAMNQGGSAVITEQILEATPLLEAFGNAKTVRNDNSSRFGKFVEIFLE-GGVIVGAITSQYLLEKSRIVFQAKNERNYHI 190 (677)
T ss_pred HhhcCCCcchHHHHHHHHHHHHHHHhCcCCCCCCCccccceEEEEEec-CCcEeEEEEEEEecCCCceeecCCCCchHHH
Confidence 999876667799999999999999999999999999999999999995 7999999999999999999999999999999
Q ss_pred HHHHHhhcccChh--HH----HHcc-----------------------------CCChhh--------------------
Q psy17386 161 FYQLVEAAQYSSS--IN----KEIM-----------------------------HYTSEE-------------------- 185 (276)
Q Consensus 161 FYqllaG~~~~~~--l~----~~~~-----------------------------~~~~~d-------------------- 185 (276)
|||||+|++++++ +. +.|+ +|++++
T Consensus 191 FYqll~g~~~~~~~~~~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~al~~lg~~~~e~~~i~~iLaaILhLGni~F~ 270 (677)
T cd01387 191 FYELLAGLPAQLRQAFSLQEAETYYYLNQGGNCEIAGKSDADDFRRLLAAMEVLGFSSEDQDSIFRILASILHLGNVYFE 270 (677)
T ss_pred HHHHHhCCCHHHHHHhcCCCHHhCchhcCCCcccCCCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCeEEe
Confidence 9999999875321 00 1111 121111
Q ss_pred -----------------------------------------------------------hhhh------hhHHHHHHHHh
Q psy17386 186 -----------------------------------------------------------KSHV------IWVFAWLVNHI 200 (276)
Q Consensus 186 -----------------------------------------------------------~rda------~~LF~wlv~~i 200 (276)
+||| ++||+|||++|
T Consensus 271 ~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~lt~~~~~~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~i 350 (677)
T cd01387 271 KRETDAQEVASVVSAREIQAVAELLQISPEGLQKAITFKVTETRREKIFTPLTVESAVDARDAIAKVLYALLFNWLITRV 350 (677)
T ss_pred eccCCCCcccccCCHHHHHHHHHHhCCCHHHHHHHhccCeEEeCCceEeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3565 99999999999
Q ss_pred hhccCCCCCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCc
Q psy17386 201 NTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPR 265 (276)
Q Consensus 201 N~~l~~~~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~ 265 (276)
|++|.+. ....+||||||||||+|+.||||||||||||||||++|++++|+.||+||.+|||+|
T Consensus 351 N~~l~~~-~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~vF~~eq~eY~~EgI~~ 414 (677)
T cd01387 351 NALVSPT-QDTLSIAILDIYGFEDLSFNSFEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDW 414 (677)
T ss_pred HHhcCCC-CCCceEEEEecCccccCCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999874 456899999999999999999999999999999999999999999999999999987
No 8
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=7.4e-94 Score=725.06 Aligned_cols=266 Identities=47% Similarity=0.731 Sum_probs=240.4
Q ss_pred CcccCeEEEecCCCCCCCCCHHHHHHhhcCc-CCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAK-MGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~-~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~y 79 (276)
||+|++||+||||+.+|+|++++++.|+++. ..++|||||++|+.||+.|+.+++||||||||||||||||++|++|+|
T Consensus 38 T~~G~iLiavNPyk~l~~y~~~~~~~Y~~~~~~~~lpPHiy~iA~~Ay~~m~~~~~~QsIiisGESGAGKTet~K~il~y 117 (692)
T cd01385 38 TYAGSILVAVNPFKFLPIYNPKYVRLYENQQRLGKLPPHIFAIADVAYYNMLRKKVNQCIVISGESGSGKTESTNFLIHH 117 (692)
T ss_pred EeECCEEEEECCCcCCCCCCHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHHHHHHHH
Confidence 8999999999999999999999999999887 789999999999999999999999999999999999999999999999
Q ss_pred HHhhccCC--cchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCCc
Q psy17386 80 LCSVTSNV--STWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERN 157 (276)
Q Consensus 80 L~~~~~~~--~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~Ern 157 (276)
|+.+++.. ...++++|++++|||||||||||.+|+||||||||++|+|+.+|.|+||+|.+||||||||+.|++||||
T Consensus 118 L~~~s~~~~~~~~i~~~i~~snpiLEAFGNAkT~~N~NSSRFGK~i~l~F~~~g~i~Ga~i~~yLLEksRV~~q~~gERN 197 (692)
T cd01385 118 LTALSQKGYAGSGVEQTILSAGPVLEAFGNAKTAHNNNSSRFGKFIQVNYRENGMVRGAVVEKYLLEKSRIVSQEKDERN 197 (692)
T ss_pred HHHhccCCccCCcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEEECCCCCEEEEEEEEeecccceeeecCCCCch
Confidence 99987543 3578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhcccChhHH------HHcc-----------------------------CCChhh-----------------
Q psy17386 158 YHVFYQLVEAAQYSSSIN------KEIM-----------------------------HYTSEE----------------- 185 (276)
Q Consensus 158 fHIFYqllaG~~~~~~l~------~~~~-----------------------------~~~~~d----------------- 185 (276)
||||||||+|+++++.-. ..|+ ||++++
T Consensus 198 fHIFYqll~G~~~~~~~~~~l~~~~~y~yL~~~~~~~~~~~dd~~~f~~~~~al~~lG~~~~~~~~i~~iLaaILhLGni 277 (692)
T cd01385 198 YHVFYYLLLGASEEERKQEFLLKQPDYFYLNQHNLKIEDGEDEKHEFERLKQAMEMVGFLAATQKQIFAVLSAVLLLGNV 277 (692)
T ss_pred hHHHHHHHcCCCHHHHHHhcCCChhcCCeeCCCCCccCCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc
Confidence 999999999997532110 1111 111111
Q ss_pred ---------------------------------------------------------------hhhh------hhHHHHH
Q psy17386 186 ---------------------------------------------------------------KSHV------IWVFAWL 196 (276)
Q Consensus 186 ---------------------------------------------------------------~rda------~~LF~wl 196 (276)
+||| ++||+||
T Consensus 278 ~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~i~~~~~~~qa~~~rdalak~lY~~LF~wi 357 (692)
T cd01385 278 TYKKRATYHRDESLEVGNPEVVDLLSQLLKVKRETLMEALTKKRTVTVNETLILPYSLSEAITARDAMAKCLYSALFDWI 357 (692)
T ss_pred eeeecccCCCCCceecCCHHHHHHHHHHhCCCHHHHHHHhccCeEEeCCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555 9999999
Q ss_pred HHHhhhccCCCCC---CcceeeeeecccccccCC-CcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCch
Q psy17386 197 VNHINTCTNPGQD---STRFLGVLDIFGFENFAV-NSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPRL 266 (276)
Q Consensus 197 v~~iN~~l~~~~~---~~~~IgiLDi~GFE~~~~-NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~~ 266 (276)
|++||++|.+..+ ...+||||||||||+|+. ||||||||||||||||++|+++||+.||++|++|||+|.
T Consensus 358 V~~IN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~ 431 (692)
T cd01385 358 VLRINHALLNKDDVAVSGLSIGVLDIFGFEDFGRCNSFEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWT 431 (692)
T ss_pred HHHHHHHhcccccccccceEEEEEecCccccCCCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 9999999986543 457999999999999999 999999999999999999999999999999999999875
No 9
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=9.9e-94 Score=729.23 Aligned_cols=265 Identities=31% Similarity=0.457 Sum_probs=238.7
Q ss_pred CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
||+|++||+||||+.+++|++++++.|+++...++|||||++|+.||+.|+.+++||||||||||||||||++|+||+||
T Consensus 31 T~~G~iLIavNPyk~l~iY~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiiSGESGAGKTe~tK~i~~yl 110 (767)
T cd01386 31 TCAGPDLLVLNPMAPLALYSEKVPSMFRGCKAEDMPPHIYSLAQTAYRALLETRRDQSIIFLGRSGAGKTTSCKHALEYL 110 (767)
T ss_pred EeECCeEEEECCCCCCCCCCHHHHHHHhcCCcCCCCCCHHHHHHHHHHHHHHcCCCceEEEecCCCCCcHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCc-chHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCCchH
Q psy17386 81 CSVTSNVS-TWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYH 159 (276)
Q Consensus 81 ~~~~~~~~-~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~ErnfH 159 (276)
+.++++.. ....++|++++|||||||||||.+|+||||||||++|+|+.+|.|+||+|.+||||||||+.|++||||||
T Consensus 111 a~~~~~~~~~~~~e~i~~~npiLEAFGNAkT~rNdNSSRFGK~i~l~F~~~g~i~Ga~i~~yLLEKSRVv~q~~gERNFH 190 (767)
T cd01386 111 ALAAGSVDGRVSVEKVRALFTILEAFGNVSTALNGNATRFTQILSLDFDQTGQIASASLQTMLLERSRVARRPNGETNFV 190 (767)
T ss_pred HhccCCCCcccHHHHHHhhchHHHHhhccCcCCCCCcCcceeEEEEEECCCCcEeEEEEEEEecccCceeecCCCCCcch
Confidence 99876432 23357899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccChh--HH-------------------------HHcc---------CCChhh------------------
Q psy17386 160 VFYQLVEAAQYSSS--IN-------------------------KEIM---------HYTSEE------------------ 185 (276)
Q Consensus 160 IFYqllaG~~~~~~--l~-------------------------~~~~---------~~~~~d------------------ 185 (276)
||||||+|++.+.. +. +.|. ||+++|
T Consensus 191 IFYqLlaG~~~~~~~~l~L~~~~~~~~~~~~~~~~~~d~~~D~~~f~~~~~Al~~lGfs~~e~~~If~iLaaILhLGNi~ 270 (767)
T cd01386 191 VFSQLLAGVDGDLRTELHLEQMAESSSFGMGGLSKPEDKQKAAIDFSRLQQAMEVLGISEGEQRAIWRVLAAIYHLGAAG 270 (767)
T ss_pred hHHHHHhCCCHHHHHHhcCCCccccchhhcCCCCCCcCcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCce
Confidence 99999999864210 00 0111 111111
Q ss_pred ----------------------------------------------------------------------hhhh------
Q psy17386 186 ----------------------------------------------------------------------KSHV------ 189 (276)
Q Consensus 186 ----------------------------------------------------------------------~rda------ 189 (276)
+|||
T Consensus 271 f~~~~~~~~~~~~~~~~~vA~LLgv~~~~L~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~rdalaK~lY 350 (767)
T cd01386 271 ATKVAGRKQFARPEWAQKAAELLGCPLEELSSATFKHTLRGGINQMTTGPQRPGLSDTETSSGLKMTAVECLEGMASGLY 350 (767)
T ss_pred eeecCCccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEeecceeeeccccccccccccccCCCHHHHHHHHHHHHHHHH
Confidence 2455
Q ss_pred hhHHHHHHHHhhhccCCCCCCcceeeeeecccccccCC------CcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCC
Q psy17386 190 IWVFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAV------NSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIK 263 (276)
Q Consensus 190 ~~LF~wlv~~iN~~l~~~~~~~~~IgiLDi~GFE~~~~------NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~ 263 (276)
+|||+|||.+||++|.+......+||||||||||+|+. |||||||||||||||||+|+++||+.||+||++|||
T Consensus 351 ~rLF~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f~~n~~~~~NsfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI 430 (767)
T cd01386 351 SELFAAVVSLINRSISSSHHSIASIMLVDTPGFQNPASQGKDRAATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGV 430 (767)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcEEEEEecccccccccccccCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 89999999999999988766678999999999999984 899999999999999999999999999999999999
Q ss_pred Cc
Q psy17386 264 PR 265 (276)
Q Consensus 264 ~~ 265 (276)
+|
T Consensus 431 ~~ 432 (767)
T cd01386 431 EV 432 (767)
T ss_pred Cc
Confidence 99
No 10
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=1.6e-93 Score=721.24 Aligned_cols=266 Identities=44% Similarity=0.704 Sum_probs=242.1
Q ss_pred CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
||+|++||+||||+.+|+|++++++.|+++...++|||||++|+.||+.|+.+++||||||||||||||||++|++++||
T Consensus 31 T~~G~iLiavNPy~~l~ly~~~~~~~Y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yL 110 (674)
T cd01378 31 TYIGPVLISVNPFKQLPIYTDETIELYKGKSRYELPPHIYALADNAYRSMKSENENQCVIISGESGAGKTEAAKKIMQYI 110 (674)
T ss_pred eccCCcEEEEcCCCCCCCCCHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHcCCCceEEEEcCCCCCcchHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCC--cchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCCch
Q psy17386 81 CSVTSNV--STWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNY 158 (276)
Q Consensus 81 ~~~~~~~--~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~Ernf 158 (276)
+.++++. ...++++|++++|||||||||||.+|+||||||||++|+|+.+|.++||+|.+||||||||+.|++|||||
T Consensus 111 ~~~~~~~~~~~~i~~~i~~~npiLEAFGNAkT~~N~NSSRFgk~~~l~f~~~g~i~ga~i~~yLLEksRVv~~~~gErnf 190 (674)
T cd01378 111 AAVSGGGQKVERVKDVILQSNPLLEAFGNAKTLRNNNSSRFGKYMEIQFDFKGDPVGGKITNYLLEKSRVVSQNKGERNF 190 (674)
T ss_pred HhcCCCCCccccHHHHHHHHHHHHHHhhccccCCCCCcchhheeEEEEECCCCCEeeEEEEEeecCCCceeecCCCCchh
Confidence 9998754 34688999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccChhHH------HHcc-----------------------------CCChhh------------------
Q psy17386 159 HVFYQLVEAAQYSSSIN------KEIM-----------------------------HYTSEE------------------ 185 (276)
Q Consensus 159 HIFYqllaG~~~~~~l~------~~~~-----------------------------~~~~~d------------------ 185 (276)
|||||||+|+++++.-. +.|. +|+++|
T Consensus 191 HIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~al~~lG~s~~e~~~i~~ilaaILhLGni~ 270 (674)
T cd01378 191 HIFYQLLAGASEQLLRELGLQKPEYYYYLNQSQCYTVDGIDDKKDFKETQNAMKVIGFSEDEQDEIFRIVAAILHLGNVQ 270 (674)
T ss_pred HHHHHHHcCCCHHHHHHhCCCChhhCeeecCCCccCCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceE
Confidence 99999999987432100 1111 122111
Q ss_pred --------------------------------------------------------------hhhh------hhHHHHHH
Q psy17386 186 --------------------------------------------------------------KSHV------IWVFAWLV 197 (276)
Q Consensus 186 --------------------------------------------------------------~rda------~~LF~wlv 197 (276)
.||| ++||+|||
T Consensus 271 f~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV 350 (674)
T cd01378 271 FAENGDGAAVISDKDVLDFAAYLLGVDPSELEKALTSRTIETGGGGRGEVYDVPLNVEQAAYTRDALAKAIYSRLFDWLV 350 (674)
T ss_pred EeccCCCccccCChHHHHHHHHHcCCCHHHHHHHhcccEEEeCCCCCceeEEecCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2455 89999999
Q ss_pred HHhhhccCCC-CCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCch
Q psy17386 198 NHINTCTNPG-QDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPRL 266 (276)
Q Consensus 198 ~~iN~~l~~~-~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~~ 266 (276)
.+||++|.+. .....+||||||||||+|+.||||||||||||||||++|++++|+.||++|++|||+|.
T Consensus 351 ~~IN~~l~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~~Y~~EgI~~~ 420 (674)
T cd01378 351 SRINKALQVKSPGKNKVIGVLDIYGFEIFQKNSFEQFCINYVNEKLQQIFIELTLKAEQEEYVREGIKWT 420 (674)
T ss_pred HHHHHHhcCCcccCcceEEEEecccccccccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 9999999875 45678999999999999999999999999999999999999999999999999999983
No 11
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=1.9e-93 Score=720.09 Aligned_cols=261 Identities=46% Similarity=0.754 Sum_probs=236.9
Q ss_pred CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
||+|++||+||||+.+|+|+++.++.|+++. ..|||||++|++||+.|+.+++||||||||||||||||++|++|+||
T Consensus 39 T~~G~iLiavNPy~~l~ly~~~~~~~y~~~~--~~~PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~i~~yL 116 (677)
T cd01383 39 TKAGPVLVAVNPFKEVPLYGNDYIEAYRKKS--NDSPHVYAIADTAYNEMMRDEVNQSIIISGESGAGKTETAKIAMQYL 116 (677)
T ss_pred EEECCEEEEEcCCcCCCCCCHHHHHHhhCCC--CCCCCHHHHHHHHHHHHHHcCCCceEEEecCCCCCcchHHHHHHHHH
Confidence 8999999999999999999999999999765 46999999999999999999999999999999999999999999999
Q ss_pred HhhccCCcchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCCchHH
Q psy17386 81 CSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHV 160 (276)
Q Consensus 81 ~~~~~~~~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~ErnfHI 160 (276)
+.++++ +.++++|++++|||||||||||.+|+||||||||++|+|+.+|+|+||+|.+||||||||+.|++|||||||
T Consensus 117 a~~~~~--~~i~~~il~snpiLEaFGNAkT~~N~NSSRFGK~~~l~f~~~g~i~ga~i~~yLLEksRv~~q~~gErNfHI 194 (677)
T cd01383 117 ASLGGG--SGIEYEILQTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGAKIQTFLLEKSRVVQCARGERSYHI 194 (677)
T ss_pred HhhCCC--CcHHHHHHHHHHHHHHhhccccCCCCCcCccceeEEEEECCCCcEEEEEEEEEecCCCceeccCCCCchhHH
Confidence 998764 378999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccChh--H--H--HHcc-----------------------------CCChhh--------------------
Q psy17386 161 FYQLVEAAQYSSS--I--N--KEIM-----------------------------HYTSEE-------------------- 185 (276)
Q Consensus 161 FYqllaG~~~~~~--l--~--~~~~-----------------------------~~~~~d-------------------- 185 (276)
|||||+|++++.. + . +.|+ ||+++|
T Consensus 195 FYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dd~~~f~~~~~al~~lG~~~~e~~~I~~iLaaILhLGNi~F~ 274 (677)
T cd01383 195 FYQLCAGAPPALKEKLNLKSASEYKYLKQSCCYSINGVDDAQRFHTLVEALDIVHISKEDQENVFAMLAAVLWLGNVSFT 274 (677)
T ss_pred HHHHHcCCCHHHHHHhCCCCHHHCceecCCCcccCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEE
Confidence 9999999875321 0 0 1121 222211
Q ss_pred ---------------------------------------------------------hhhh------hhHHHHHHHHhhh
Q psy17386 186 ---------------------------------------------------------KSHV------IWVFAWLVNHINT 202 (276)
Q Consensus 186 ---------------------------------------------------------~rda------~~LF~wlv~~iN~ 202 (276)
+||| ++||+|||++||+
T Consensus 275 ~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~~~~~~~~~qa~~~rdalak~lY~~lF~wiV~~IN~ 354 (677)
T cd01383 275 VIDNENHVEPVADEALSTAAKLIGCNIEDLMLALSTRKMHVNNDNIVQKLTLQQAIDARDALAKSIYASLFDWLVEQINK 354 (677)
T ss_pred ecCCCcccccCChHHHHHHHHHhCCCHHHHHHHhhhcEEEeCCceEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4565 9999999999999
Q ss_pred ccCCCCC-CcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCc
Q psy17386 203 CTNPGQD-STRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPR 265 (276)
Q Consensus 203 ~l~~~~~-~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~ 265 (276)
+|.++.. ...+||||||||||+|+.||||||||||||||||++|++++|+.||++|++|||+|
T Consensus 355 ~l~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~vF~~EqeeY~~EgI~~ 418 (677)
T cd01383 355 SLEVGKRRTGRSISILDIYGFESFDKNSFEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDW 418 (677)
T ss_pred HhcCCcccccceEEEeeccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 9986543 46799999999999999999999999999999999999999999999999999988
No 12
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=2.4e-93 Score=717.03 Aligned_cols=265 Identities=42% Similarity=0.710 Sum_probs=242.1
Q ss_pred CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
||+|++||+||||+.+++|++++++.|+++.+.++|||||++|+.||+.|...+++|||||||||||||||++|++++||
T Consensus 31 T~~G~iLiavNPyk~l~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGESGsGKTet~K~l~~yL 110 (653)
T cd01379 31 TYVGDILIAVNPFQQLGLYTTQHSRLYTGQKRSSNPPHIFAIADAAYQSLVTYNQDQCIVISGESGSGKTESAHLLVQQL 110 (653)
T ss_pred EeECCEEEEECCCCCCCCCCHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCcchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCCchHH
Q psy17386 81 CSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHV 160 (276)
Q Consensus 81 ~~~~~~~~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~ErnfHI 160 (276)
+.++++....++++|++++|||||||||||.+|+||||||||++|+|+.+|+|+||+|.+||||||||++|++|||||||
T Consensus 111 ~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHI 190 (653)
T cd01379 111 TVLGKANNRTLQEKILQVNSLVEAFGNARTGINDNSSRFGKYLEMKFTRSGAVVGARISEYLLEKSRVVHQAEGEKNFHI 190 (653)
T ss_pred HHhcCCCCccHHHHHHHHHHHHHHhhccCcCCCCCcccceeEEEEEECCCCcEEEEEEEEEeccCCceeccCCCCCceee
Confidence 99876656789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccChhHH-------------------------------HHcc---------CCChhh---------------
Q psy17386 161 FYQLVEAAQYSSSIN-------------------------------KEIM---------HYTSEE--------------- 185 (276)
Q Consensus 161 FYqllaG~~~~~~l~-------------------------------~~~~---------~~~~~d--------------- 185 (276)
|||||+|+++++.++ +.|. +|++++
T Consensus 191 FYqLl~G~~~~~~~~~~~L~~~~~~~yL~~~~~~~~~~~~~~~~~~~~f~~~~~al~~lg~~~~e~~~I~~iLaaILhLG 270 (653)
T cd01379 191 FYYIYAGLAEEKKLAEYKLPESKTPRYLQNEATRVVQDITSNKFYKDQFEQIEQCFRVIGFTDEEVGSVYRILAAILNLG 270 (653)
T ss_pred HHHHHhCCCHHHHHHhcCCCCccccCccCCCCccccCCCccchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhc
Confidence 999999987543221 0111 122111
Q ss_pred -----------------------------------------------------------------hhhh------hhHHH
Q psy17386 186 -----------------------------------------------------------------KSHV------IWVFA 194 (276)
Q Consensus 186 -----------------------------------------------------------------~rda------~~LF~ 194 (276)
+||| ++||+
T Consensus 271 Ni~F~~~~~~~~~~~~~i~~~~~l~~~A~LLgv~~~~L~~~L~~~~~~~~ge~i~~~~~~~qA~~~rdalak~lY~~LF~ 350 (653)
T cd01379 271 DIEFGSVASEHQTDKSRVSNVAALENAASLLCIRSDELQEALTSHCVVTRGETIVRHNTVEKATDARDAMAKALYGRLFS 350 (653)
T ss_pred ceEEEeccccCCCcccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEEeCCceeeecCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4565 99999
Q ss_pred HHHHHhhhccCCCCC-----CcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCc
Q psy17386 195 WLVNHINTCTNPGQD-----STRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPR 265 (276)
Q Consensus 195 wlv~~iN~~l~~~~~-----~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~ 265 (276)
|||++||++|.+... ...+||||||||||+|+.||||||||||||||||++|+++||+.||++|++|||+|
T Consensus 351 wiV~~IN~~l~~~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~ 426 (653)
T cd01379 351 WIVNRINSLLKHDRNASNSSDQLNVGILDIFGFENFKKNSFEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVDA 426 (653)
T ss_pred HHHHHHHHHhccccccccccccceEEEEeccccccCCCCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999976532 35799999999999999999999999999999999999999999999999999999
No 13
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=9.1e-92 Score=710.75 Aligned_cols=266 Identities=50% Similarity=0.808 Sum_probs=244.3
Q ss_pred CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
||+|++||+||||+.+|+|+++.+++|+++...++|||||++|++||+.|+.+++||||||||||||||||++|++|+||
T Consensus 31 T~~G~iLiavNPy~~l~~y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl 110 (679)
T cd00124 31 TYAGPILIAVNPYKDLPNYGPETIRKYRGKSRSELPPHVFAIADRAYRNMLRDRRNQSIIISGESGAGKTENTKLIMKYL 110 (679)
T ss_pred EeECCEEEEECCCCCCCCCCHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCcchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCCchHH
Q psy17386 81 CSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHV 160 (276)
Q Consensus 81 ~~~~~~~~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~ErnfHI 160 (276)
+.++++....++++|++++|||||||||||.+|+||||||||++|+|+.+|+|+||+|.+||||||||+.|++|||||||
T Consensus 111 ~~~~~~~~~~i~~~i~~~n~iLEaFGNAkT~~N~NSSRfGk~~~l~f~~~g~i~ga~i~~yLLEksRv~~~~~gErnfHI 190 (679)
T cd00124 111 ASLAGSNDTGIEEKILAANPILEAFGNAKTVRNNNSSRFGKFIELQFDETGKISGAKITTYLLEKSRVVSQEPGERNFHI 190 (679)
T ss_pred HhccCCCcchHHHHHHHHhHHHHHhcccccCCCCCcccceeEEEEEECCCCcEeEEEEEEEEcccceeeccCCCCCchhH
Confidence 99987666779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccChh----HH--HHcc-----------------------------CCChhh--------------------
Q psy17386 161 FYQLVEAAQYSSS----IN--KEIM-----------------------------HYTSEE-------------------- 185 (276)
Q Consensus 161 FYqllaG~~~~~~----l~--~~~~-----------------------------~~~~~d-------------------- 185 (276)
|||||+|+++++. |. +.|+ ||++++
T Consensus 191 FYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~al~~lg~~~~e~~~i~~iLaaILhLGni~f~ 270 (679)
T cd00124 191 FYQLLAGASPEERKKLGLKRPESYRYLNQGGCNDVDGIDDAEEFEELKEALKSLGFSEEEIESIFRILAAILHLGNIEFK 270 (679)
T ss_pred HHHHHcCCCHHHHHhcCCCCcccCeeeCCCCcccCCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCeeEE
Confidence 9999999864211 00 1111 121111
Q ss_pred -----------------------------------------------------------hhhh------hhHHHHHHHHh
Q psy17386 186 -----------------------------------------------------------KSHV------IWVFAWLVNHI 200 (276)
Q Consensus 186 -----------------------------------------------------------~rda------~~LF~wlv~~i 200 (276)
.||| ++||+|||++|
T Consensus 271 ~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~~~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~i 350 (679)
T cd00124 271 SVGGEGQEAAEVKNTEVLSKAAELLGLDPEELEEALTYKVTKVGGEVITIPLTKEEAVDSRDSLAKALYSRLFDWIVSRI 350 (679)
T ss_pred ecCCCCcceeecCCHHHHHHHHHHhCCCHHHHHHHhhccEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555 99999999999
Q ss_pred hhccCCCCCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCch
Q psy17386 201 NTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPRL 266 (276)
Q Consensus 201 N~~l~~~~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~~ 266 (276)
|.+|.++.....+||||||||||+|+.||||||||||||||||++|++++|+.||++|++|||+|.
T Consensus 351 N~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQLcINy~NEkLq~~f~~~~f~~eq~~y~~EgI~~~ 416 (679)
T cd00124 351 NSSLKPKDGRSLFIGILDIFGFEIFEKNSFEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWE 416 (679)
T ss_pred HHHhcCCCCCCceeeEEeccccccCCCCCHHHHhcccchHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 999988767789999999999999999999999999999999999999999999999999999984
No 14
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=1.7e-91 Score=708.06 Aligned_cols=267 Identities=54% Similarity=0.816 Sum_probs=244.2
Q ss_pred CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
||+|++||+||||+.+|+|+++++++|+++...++|||||++|++||+.|+.+++||||||||||||||||++|++++||
T Consensus 37 T~~G~iLiavNP~~~l~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl 116 (677)
T smart00242 37 TYIGLVLVAVNPYKQLPIYTDEVIKKYRGKSRGELPPHVFAIADNAYRNMLNDKENQSIIISGESGAGKTENTKKIMQYL 116 (677)
T ss_pred ccccceEEEecCCccCCCCCHHHHHHccCCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEecCCCCcchHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCC--cchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCCch
Q psy17386 81 CSVTSNV--STWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNY 158 (276)
Q Consensus 81 ~~~~~~~--~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~Ernf 158 (276)
+.++++. ...++++|++++|||||||||||.+|+||||||||++|+|+.+|+|+||+|.+||||||||+.|++|||||
T Consensus 117 ~~~~~~~~~~~~i~~~i~~~n~iLEAFGNAkT~~N~NSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRv~~~~~gErnf 196 (677)
T smart00242 117 AAVSGSNTSVGSVEDQILESNPILEAFGNAKTVRNNNSSRFGKFIEIHFDAKGKIVGAKIETYLLEKSRVVSQAKGERNY 196 (677)
T ss_pred HhhcCCCCccccHHHHHHHHHHHHHHhhccccCCCCCccchheeEEEEECCCCcEeEEEEEEeecCCceEEecCCCCCch
Confidence 9998764 56799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccChh----HH--HHcc-----------------------------CCChhh------------------
Q psy17386 159 HVFYQLVEAAQYSSS----IN--KEIM-----------------------------HYTSEE------------------ 185 (276)
Q Consensus 159 HIFYqllaG~~~~~~----l~--~~~~-----------------------------~~~~~d------------------ 185 (276)
|||||||+|+++++. |. +.|+ ||++++
T Consensus 197 HIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~al~~lG~~~~e~~~I~~iLaaILhLGni~ 276 (677)
T smart00242 197 HIFYQLLAGASEELKKELGLKSPEDYRYLNQGGCLSVDGIDDAEEFKETLNAMRVLGFSEEEQESIFKILAAILHLGNIE 276 (677)
T ss_pred HHHHHHHcCCCHHHHHhcCCCChhhCceeCCCCCccCCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccee
Confidence 999999999874211 00 1111 121111
Q ss_pred ------------------------------------------------------------hhhh------hhHHHHHHHH
Q psy17386 186 ------------------------------------------------------------KSHV------IWVFAWLVNH 199 (276)
Q Consensus 186 ------------------------------------------------------------~rda------~~LF~wlv~~ 199 (276)
.||| ++||+|||++
T Consensus 277 F~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~~~~~~~~~~a~~~rd~lak~lY~~lF~wiV~~ 356 (677)
T smart00242 277 FEEGRNDNAASTVKDKEELENAAELLGVDPEELEKALTKRKIKTGGEVITKPLNVEQALDARDALAKALYSRLFDWLVKR 356 (677)
T ss_pred EEecCCCCcccccCCHHHHHHHHHHhCCCHHHHHHHhcccEEEeCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455 9999999999
Q ss_pred hhhccCCCCCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCchh
Q psy17386 200 INTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPRLE 267 (276)
Q Consensus 200 iN~~l~~~~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~~~ 267 (276)
||++|.++.....+||||||||||+|+.||||||||||||||||++|++++|+.||++|++|||+|.+
T Consensus 357 iN~~l~~~~~~~~~IgiLDifGFE~f~~NsfEQLcINyaNEkLq~~f~~~~f~~eq~~y~~EgI~~~~ 424 (677)
T smart00242 357 INKSLSFKDGSTYFIGVLDIYGFEIFEVNSFEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTF 424 (677)
T ss_pred HHHHhcCCCCCceEEEEEecccccccccCCHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 99999887678899999999999999999999999999999999999999999999999999999854
No 15
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=3.6e-91 Score=707.82 Aligned_cols=264 Identities=45% Similarity=0.757 Sum_probs=238.6
Q ss_pred CcccCeEEEecCCCCCC-CCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386 1 TYTGTILVAVNPYKELD-IYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 1 Ty~G~~LiavNP~~~l~-~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~y 79 (276)
||+|++||+||||+.+| +|+++.++.|+++...++|||||++|++||+.|+.+++||||||||||||||||++|++|+|
T Consensus 35 T~~G~iLiavNPy~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~K~il~y 114 (717)
T cd01382 35 TYVANILIAVNPYFDIPKLYSSDTIKKYQGKSLGTLPPHVFAIADKAYRDMKVLKMSQSIIVSGESGAGKTENTKFVLRY 114 (717)
T ss_pred EeECCEEEEECCCCcccccCCHHHHHHhhCCCcCcCCCcHHHHHHHHHHHHHhcCCCCeEEEecCCCCChhHHHHHHHHH
Confidence 89999999999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCcchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCCchH
Q psy17386 80 LCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYH 159 (276)
Q Consensus 80 L~~~~~~~~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~ErnfH 159 (276)
|+...++ ...++++|++++|||||||||||.+|+||||||||++|+|+.+|+|+||+|.+||||||||+.|++||||||
T Consensus 115 La~~~~~-~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~f~~~g~i~Ga~i~~yLLEksRVv~~~~gErNfH 193 (717)
T cd01382 115 LTESYGS-GQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKNSVVGGFVSHYLLEKSRICVQSAEERNYH 193 (717)
T ss_pred HHhhccC-CccHHHHHHHHHHHHHHhhccccCCCCCcccceeEEEEEECCCCCEeEEEEEEEeccCCceEecCCCCCchH
Confidence 9987654 367899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccChh----H------------------------------------------------HHHcc--------
Q psy17386 160 VFYQLVEAAQYSSS----I------------------------------------------------NKEIM-------- 179 (276)
Q Consensus 160 IFYqllaG~~~~~~----l------------------------------------------------~~~~~-------- 179 (276)
||||||+|++++.. | .+.|.
T Consensus 194 IFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~dD~~~f~~~~~Al~~ 273 (717)
T cd01382 194 IFYRLCAGASEDIREKLHLSSPDDFRYLNRGCTRYFANKETDKQILQNRKSPEHLKKGALKDPLLDDYGDFQRMCVALKK 273 (717)
T ss_pred HHHHHHhCCCHHHHHHhcCCChhhCeeecCCcccccccccccccccccccccccccccccCCCCCcHHHHHHHHHHHHHH
Confidence 99999999863210 0 00111
Q ss_pred -CCChhh-------------------------------------------------------------------------
Q psy17386 180 -HYTSEE------------------------------------------------------------------------- 185 (276)
Q Consensus 180 -~~~~~d------------------------------------------------------------------------- 185 (276)
+|++++
T Consensus 274 lg~s~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~r~~~~~~g~~~~~~ 353 (717)
T cd01382 274 IGLDDTEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNVKNQSEQSLEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTV 353 (717)
T ss_pred cCCCHHHHHHHHHHHHHHHhcCceeEeccCCCCCcceecCCCHHHHHHHHHHcCCCHHHHHHHHhheEEecccccCCCce
Confidence 111100
Q ss_pred ------------hhhh------hhHHHHHHHHhhhccCCCCCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHH
Q psy17386 186 ------------KSHV------IWVFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFN 247 (276)
Q Consensus 186 ------------~rda------~~LF~wlv~~iN~~l~~~~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~ 247 (276)
.||| ++||+|||++||+++.+. ....+||||||||||+|+.||||||||||||||||++|+
T Consensus 354 i~~~l~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~-~~~~~IgiLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~ 432 (717)
T cd01382 354 IKVPLKVEQANNARDALAKAVYSHLFDHVVSRVNQCFPFE-TSSNFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFN 432 (717)
T ss_pred EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCcEEEEEeccccccCCCCCHHHHhhhhhHHHHHHHHH
Confidence 3454 899999999999999654 456899999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHhhhCCCch
Q psy17386 248 HYVFALEQEIVSISIKPRL 266 (276)
Q Consensus 248 ~~~f~~eq~eY~~E~~~~~ 266 (276)
++||..||++|++|||+|.
T Consensus 433 ~~if~~Eq~~Y~~EgI~~~ 451 (717)
T cd01382 433 ERILKEEQELYQREGLGVN 451 (717)
T ss_pred HHHHHHHHHHHHhcCCCCc
Confidence 9999999999999999884
No 16
>KOG0164|consensus
Probab=100.00 E-value=7.1e-92 Score=684.82 Aligned_cols=266 Identities=45% Similarity=0.747 Sum_probs=243.3
Q ss_pred CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
||+|++||+||||+.++||+++++++|+|...-+.|||+||+|+.||+.|.+..+||||+|||||||||||++|+||+|+
T Consensus 39 TyIGeV~VsvNPYrql~IYg~~ti~kYkgre~yE~~PHlfAiad~aYrslk~r~rDtcI~ISGESGAGKTEASK~iMqYi 118 (1001)
T KOG0164|consen 39 TYIGEVLVSVNPYRQLNIYGPETIEKYKGREFYERPPHLFAIADAAYRSLKRRSRDTCILISGESGAGKTEASKIIMQYI 118 (1001)
T ss_pred EEEccEEEEecchhhcCccCHHHHHHhCCeeecccCchHHHhHHHHHHHHHhccCCeEEEEecCCCCCccHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCc----chHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCC
Q psy17386 81 CSVTSNVS----TWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGER 156 (276)
Q Consensus 81 ~~~~~~~~----~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~Er 156 (276)
|.+.+.+. ..+..+++++++||||||||||.+|+|||||||||.++||-+|..+|+.|..||||||||+.|.+|||
T Consensus 119 AAvtn~~qq~eierVKn~LLqSN~VLEAFGNAKT~RNdNSSRFGKYMDInFDfKGdPvGG~I~nYLLEKSRVv~Q~~GER 198 (1001)
T KOG0164|consen 119 AAVTNASQQGEIERVKNVLLQSNCVLEAFGNAKTNRNDNSSRFGKYMDINFDFKGDPVGGHITNYLLEKSRVVKQQPGER 198 (1001)
T ss_pred HHhcCccccchHHHHHHHHHhcchHHHHhcccccccCCchhhhhcceeeeccccCCcccchHhHHHHhhhhhhhcCcCcc
Confidence 99987542 35667899999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHhhcccChhHH--------HHcc----------------------------CCChhh---------------
Q psy17386 157 NYHVFYQLVEAAQYSSSIN--------KEIM----------------------------HYTSEE--------------- 185 (276)
Q Consensus 157 nfHIFYqllaG~~~~~~l~--------~~~~----------------------------~~~~~d--------------- 185 (276)
|||||||||.|+++. .|+ ..|. +|+++|
T Consensus 199 NFH~FYQLL~G~~e~-~Lr~l~Ler~~~~Y~ylnqg~~~v~sinD~~dfk~V~~Am~vIgFs~eEVe~v~~iiAavLhLG 277 (1001)
T KOG0164|consen 199 NFHIFYQLLRGGEEQ-LLRQLGLERNPQSYNYLNQGSAKVSSINDASDFKAVQKAMRVIGFSEEEVESVLSIIAAVLHLG 277 (1001)
T ss_pred hHHHHHHHHcCCcHH-HHHHhccccCcchhhhhhhhhhhhcccccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc
Confidence 999999999999853 222 1121 555554
Q ss_pred ------------------------------------------------------------hhhh------hhHHHHHHHH
Q psy17386 186 ------------------------------------------------------------KSHV------IWVFAWLVNH 199 (276)
Q Consensus 186 ------------------------------------------------------------~rda------~~LF~wlv~~ 199 (276)
+||| +|||.|||.+
T Consensus 278 Nv~f~~~ed~~~~~~~~~l~~~aell~v~~del~~aL~~Rtvaa~~e~v~k~hn~~qA~YaRDAlAKaiY~RlF~Wiv~r 357 (1001)
T KOG0164|consen 278 NVEFADNEDSSGIVNGAQLKYIAELLSVTGDELERALTSRTVAAGGEIVLKQHNVEQASYARDALAKAIYSRLFTWIVNR 357 (1001)
T ss_pred ceEEeecCcccccchhHHHHHHHHHHcCCHHHHHHHHHHHHHHhccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4676 9999999999
Q ss_pred hhhccCCC-----CCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCchh
Q psy17386 200 INTCTNPG-----QDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPRLE 267 (276)
Q Consensus 200 iN~~l~~~-----~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~~~ 267 (276)
||+.+... .....-||+|||||||+|+.|||||||||||||||||.|++-+++.|||||++|||||-.
T Consensus 358 In~~i~~~~~~~~~~~~~Vigvldiygfeif~~NSFEQfcINYCNEKLQQlFIel~LKqEQEEY~rEgI~W~~ 430 (1001)
T KOG0164|consen 358 INRSIEVKGVITLRKGNTVIGVLDIYGFEIFQDNSFEQFCINYCNEKLQQLFIELVLKQEQEEYEREGIEWTH 430 (1001)
T ss_pred hhhheecccccccccCceEEEEEEeeeEEeecCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCCcee
Confidence 99998543 223578999999999999999999999999999999999999999999999999999964
No 17
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=8.4e-90 Score=698.35 Aligned_cols=268 Identities=49% Similarity=0.818 Sum_probs=227.0
Q ss_pred CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
||+|++||+||||+++|+|+++.+++|+++...++|||||++|++||+.|+.+++|||||++|||||||||++|++++||
T Consensus 30 T~~G~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHif~~a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~k~il~~L 109 (689)
T PF00063_consen 30 TYIGPILIAVNPYKPLPLYSDEVMEKYRGKRRQDLPPHIFAVAQRAYRQMLRTRQNQSIIISGESGSGKTETSKLILRYL 109 (689)
T ss_dssp EEETTEEEEE--SS--STSSHHHHHHHTTS-GGGS-SSHHHHHHHHHHHHHHHTSEEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCCeEEEECCchhhhhhhhhhhhhhhhhccccccCccchhhhcccccccccccccceeeccccccccccchHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCc----chHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCC
Q psy17386 81 CSVTSNVS----TWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGER 156 (276)
Q Consensus 81 ~~~~~~~~----~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~Er 156 (276)
+.++.+.. ..+.++|+++++||||||||||.+|+||||||||++|+|+.+|.++||+|.+||||||||+.+++|||
T Consensus 110 ~~~~~~~~~~~~~~i~~~i~~~~~iLeaFGnAkT~~N~nSSRfgk~~~l~f~~~~~~~g~~i~~ylLEksRv~~~~~~Er 189 (689)
T PF00063_consen 110 ASLSSSSSSSKSSSIEKKILAANPILEAFGNAKTPRNDNSSRFGKFIELQFDDSGQIVGAKIETYLLEKSRVVRQPPGER 189 (689)
T ss_dssp HHHSSSSSSTCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEEEETTSSEEEEEEEEEEE-GGGGT---TTS-
T ss_pred hhhcccccccccccccceEEeccchhhhhcccccccCCcccccceEEEEEecccccccccceecccccccceeecccccc
Confidence 99987653 57899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHhhcccChh--HH----HHcc-----------------------------CCChhh----------------
Q psy17386 157 NYHVFYQLVEAAQYSSS--IN----KEIM-----------------------------HYTSEE---------------- 185 (276)
Q Consensus 157 nfHIFYqllaG~~~~~~--l~----~~~~-----------------------------~~~~~d---------------- 185 (276)
|||||||||+|+++++. +. +.|+ +|++++
T Consensus 190 nfhiFYqll~G~~~~~~~~l~L~~~~~~~yL~~~~~~~~~~~~d~~~f~~l~~al~~lg~~~~e~~~I~~iLaaILhLGn 269 (689)
T PF00063_consen 190 NFHIFYQLLAGADDEERKELRLNDASDYRYLNQSGCSTIPGIDDAEEFQELKDALKTLGFSDEEIDDIFRILAAILHLGN 269 (689)
T ss_dssp SBHHHHHHHHTSSHHHHHHTT-S-GGGSTTCCTTSSSSBTTCTHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT
T ss_pred ccchhhhhhhccchhhhhcccccccccccceecccccccCCccCHHHhhhhhhhhccccCchhHHHHHHHHHHHHhhhcc
Confidence 99999999999986431 00 1111 222111
Q ss_pred -------------------------------------------------------------hhhh------hhHHHHHHH
Q psy17386 186 -------------------------------------------------------------KSHV------IWVFAWLVN 198 (276)
Q Consensus 186 -------------------------------------------------------------~rda------~~LF~wlv~ 198 (276)
+||| ++||+|||+
T Consensus 270 i~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~~~~~~~~~~a~~~rdalak~LY~~LF~wIV~ 349 (689)
T PF00063_consen 270 IEFVEDESDESAEVENSEELQKAAELLGVDSEELEKALTTRTIKVGGETVTKPLSVEQASDARDALAKALYSRLFDWIVE 349 (689)
T ss_dssp SSEEEETTSSSEEESTSHHHHHHHHHTTS-HHHHHHHHHSEEEESTTSEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccceeechHHHHHHhhhhcCCCHHHHHHHHhhccccccccccccccchhhhhhhhhhhhhhhhhHHHHHHHH
Confidence 4565 999999999
Q ss_pred HhhhccCCCC-CCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCchhh
Q psy17386 199 HINTCTNPGQ-DSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPRLEL 268 (276)
Q Consensus 199 ~iN~~l~~~~-~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~~~~ 268 (276)
+||.+|++.. ....+||||||||||+|..||||||||||||||||++|++++|..||++|++|||+|.++
T Consensus 350 ~iN~~L~~~~~~~~~~IgILDi~GFE~~~~N~fEQLciNyanErLq~~f~~~~f~~e~~~y~~EgI~~~~i 420 (689)
T PF00063_consen 350 RINSALSPSESENSSSIGILDIFGFENFSVNSFEQLCINYANERLQQFFNQHIFKSEQEEYKEEGIDWPFI 420 (689)
T ss_dssp HHHHHH--SS-S-SEEEEEEEEE-B---SSB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCS
T ss_pred hhhhccccccccccccCcccCccccccccccccccceeeeccccccceeeeeccccccccccccccccccc
Confidence 9999998765 577899999999999999999999999999999999999999999999999999999764
No 18
>KOG0161|consensus
Probab=100.00 E-value=4.7e-89 Score=730.63 Aligned_cols=270 Identities=53% Similarity=0.810 Sum_probs=247.7
Q ss_pred CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
||+|.+||+||||+++|||+++++++|+|+++.++||||||||+.||+.|+..++||||+|+||||||||++||.||+||
T Consensus 113 TYSGLFcVviNPyk~lpiYt~~v~~~ykgkrr~e~pPHIfavad~AYr~mL~~renQSiLiTGESGAGKTeNTKkVIqyl 192 (1930)
T KOG0161|consen 113 TYSGLFCVVINPYKRLPIYTESVVRMYKGKKREEMPPHIFAVADEAYRNMLQDRENQSILITGESGAGKTENTKKVIQYL 192 (1930)
T ss_pred HcccceeEEecCCcCCCCCCHHHHHHhcccccccCCchHHHHHHHHHHHHHhcCCCceEeeecCCCCCcchhHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCC----c--chHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCC
Q psy17386 81 CSVTSNV----S--TWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPG 154 (276)
Q Consensus 81 ~~~~~~~----~--~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~ 154 (276)
+.++++. . ..++++|++++|||||||||+|++|+|||||||||+|+|+.+|.|+||.|.+||||||||++|+++
T Consensus 193 a~va~~~~~~~~~~~~le~qi~q~npvLeaFGNa~tvrn~NssRFgkfirI~F~~~G~i~~a~Ie~yLLEKsRv~~Q~~~ 272 (1930)
T KOG0161|consen 193 ASVASSSTKKVKIEGTLEDQILQANPVLEAFGNAKTVRNDNSSRFGKFIRIHFDATGKIAGADIETYLLEKSRVIRQAPG 272 (1930)
T ss_pred HHHhhccccCCCCCCChHHHHHHhCchHHHhcChhhhcCCCCcccceeEEEecCCCCccchhhHHHHHHHHhHhhccCcc
Confidence 9998742 1 468899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHhhcccChhHH---------HHcc----------------------------CCChhh------------
Q psy17386 155 ERNYHVFYQLVEAAQYSSSIN---------KEIM----------------------------HYTSEE------------ 185 (276)
Q Consensus 155 ErnfHIFYqllaG~~~~~~l~---------~~~~----------------------------~~~~~d------------ 185 (276)
||||||||||++|.++ .++ ..|. ||++++
T Consensus 273 Er~yhiFyqlls~~~~--~l~~~l~L~~~~~~Y~f~~~~~~~i~g~dd~eef~~t~~a~~ilgfs~~E~~~~~~i~sail 350 (1930)
T KOG0161|consen 273 ERNYHIFYQLLSGADP--ELKEELLLSDNVKDYKFLSNGESTIPGVDDAEEFQETDEAMDILGFSEEEKISIFRIVSAIL 350 (1930)
T ss_pred hhHHHHHHHHHhCCCH--HHHHHHhhcccchhhhhhccccCCCCCcchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 9999999999999964 222 1222 333332
Q ss_pred -----------------------------------------------------------------hhhh------hhHHH
Q psy17386 186 -----------------------------------------------------------------KSHV------IWVFA 194 (276)
Q Consensus 186 -----------------------------------------------------------------~rda------~~LF~ 194 (276)
+..| +|||.
T Consensus 351 hlGn~~f~~~~~~~qa~~~~~~~a~ka~~llg~~~~~~~~al~~priKvg~e~v~k~q~~~q~~~~v~alAk~lYerlF~ 430 (1930)
T KOG0161|consen 351 HLGNIKFKQEPREEQAEFDNTEVADKACHLLGINVEEFLKALLRPRIKVGREWVSKAQNVEQVLFAVEALAKALYERLFG 430 (1930)
T ss_pred HhcchhhhccccccccCCCCchHHHHHHHHcCCCHHHHHHHhcccceeccchhhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 0011 99999
Q ss_pred HHHHHhhhccCCCCCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCc---------
Q psy17386 195 WLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPR--------- 265 (276)
Q Consensus 195 wlv~~iN~~l~~~~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~--------- 265 (276)
|||.+||++|+...+..+|||||||+|||+|+.||||||||||+|||||||||+|||.+||++|.+|||+|
T Consensus 431 wlV~riN~sld~~~~~~~fIgvLDiaGFEIfe~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~EgIew~fidfG~Dl 510 (1930)
T KOG0161|consen 431 WLVKRINKSLDSKQQRDYFIGVLDIAGFEIFEFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWDFIDFGLDL 510 (1930)
T ss_pred HHHHHHHHHhhhccccCCcceeeeeccccccCcCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhCCceeeeccccch
Confidence 99999999998777889999999999999999999999999999999999999999999999999998865
Q ss_pred ---hhhhhhh
Q psy17386 266 ---LELTESF 272 (276)
Q Consensus 266 ---~~~~~~~ 272 (276)
+||||+.
T Consensus 511 q~~idLIEkp 520 (1930)
T KOG0161|consen 511 QPTIDLIEKP 520 (1930)
T ss_pred hhhHHHHhch
Confidence 7888874
No 19
>KOG0162|consensus
Probab=100.00 E-value=1.5e-87 Score=655.10 Aligned_cols=265 Identities=40% Similarity=0.664 Sum_probs=241.4
Q ss_pred CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
||+|++||+||||+.+|+|++..+..|+|+..-+.||||||+|+.+|++|....+|||||||||||||||+++|.||+|+
T Consensus 49 TYIG~VLISVNPFk~m~~ft~~~~~~YqG~~q~E~pPHiyAladnmY~nM~~~~EnQCVIISGESGAGKT~aAK~IM~YI 128 (1106)
T KOG0162|consen 49 TYIGHVLISVNPFKQMPYFTEKEMELYQGAAQYENPPHIYALADNMYRNMKIDNENQCVIISGESGAGKTVAAKRIMQYI 128 (1106)
T ss_pred EEeeeEEEeecchhccccchHHHHHHhhchhhccCCchhhhhHHHHHHHhhhccccceEEEecCCCCCchHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCC--cchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCCch
Q psy17386 81 CSVTSNV--STWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNY 158 (276)
Q Consensus 81 ~~~~~~~--~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~Ernf 158 (276)
+.+++++ -..+.+-|+++||+|||||||||++|+||||||||++++|+..|.-+|++|..|||||+|||.|.++||||
T Consensus 129 s~vS~~g~kvq~vkdiiL~sNPLLEaFG~akTvRNnNSSR~GKY~Ei~Fs~ggeP~ggkisNfLLEKsRVV~q~~neRnF 208 (1106)
T KOG0162|consen 129 SRVSGGGEKVQHVKDIILQSNPLLEAFGNAKTVRNNNSSRFGKYLEIQFSRGGEPDGGKISNFLLEKSRVVMQNENERNF 208 (1106)
T ss_pred HHhccCCcchhhhhhHhhccchHHHHhcchhhhccCCcccccceEEEEecCCCCcCcchhhHHHHhhhhhhhccCCccce
Confidence 9998654 24567889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccChhHHHHc----------------------------c---------CCChhh----------------
Q psy17386 159 HVFYQLVEAAQYSSSINKEI----------------------------M---------HYTSEE---------------- 185 (276)
Q Consensus 159 HIFYqllaG~~~~~~l~~~~----------------------------~---------~~~~~d---------------- 185 (276)
||||||+.|++.+ .+..| . |+.++|
T Consensus 209 HIfYQ~~kgAs~~--~r~t~Gi~~pe~Y~Y~~~sg~~s~D~idd~kdfq~Tl~AM~vIGi~~~eQ~~v~rmva~IL~lGN 286 (1106)
T KOG0162|consen 209 HIFYQLTKGASQE--YRQTFGIQEPEYYVYLNASGCYSVDDIDDRKDFQETLHAMKVIGINQEEQDEVLRMVAGILHLGN 286 (1106)
T ss_pred eeehhhhcCccHH--HHhhhCcCCchheeeeccccceeccccchHHHHHHHHHHheeccCChHHHHHHHHHHHHHHhccc
Confidence 9999999999853 22111 1 111111
Q ss_pred ---------------------------------------------------------------hhhh------hhHHHHH
Q psy17386 186 ---------------------------------------------------------------KSHV------IWVFAWL 196 (276)
Q Consensus 186 ---------------------------------------------------------------~rda------~~LF~wl 196 (276)
.||| .+||+||
T Consensus 287 IsF~Ee~~~a~V~~~~~~~f~ayLlgi~s~~l~~~Lt~R~M~s~~G~kr~~~~v~LNv~QA~~~RDAlakaiy~~lFD~l 366 (1106)
T KOG0162|consen 287 ISFIEEGNYAAVSDKSVLEFPAYLLGIDSARLEEKLTSRIMESKWGGKREVIHVPLNVEQASYTRDALAKAIYARLFDWL 366 (1106)
T ss_pred eeEEeeCCcceeccchHHHhHHHHhcCCHHHHHHHHHHHHHhhcccccceeEEecccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4676 9999999
Q ss_pred HHHhhhccCCCC-CCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCchh
Q psy17386 197 VNHINTCTNPGQ-DSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPRLE 267 (276)
Q Consensus 197 v~~iN~~l~~~~-~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~~~ 267 (276)
|++||+++.... ....+||||||||||+|+.||||||||||+||||||.|++-+++.|||||.+|||.|-+
T Consensus 367 V~rvNkam~~~~~~~~~sIGiLDIYGFEIFe~N~FEQ~CINfVNEKLQQIFIeLTLKaEQEeYvrE~I~WTp 438 (1106)
T KOG0162|consen 367 VERVNKAMQAFKGSEEYSIGILDIYGFEIFENNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVREGIKWTP 438 (1106)
T ss_pred HHHHHHHHhcCCCccccceeeEEeeeeeecccCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccccc
Confidence 999999997332 25689999999999999999999999999999999999999999999999999999964
No 20
>KOG0163|consensus
Probab=100.00 E-value=1.7e-87 Score=655.84 Aligned_cols=269 Identities=50% Similarity=0.810 Sum_probs=244.5
Q ss_pred CcccCeEEEecCCCCCC-CCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386 1 TYTGTILVAVNPYKELD-IYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 1 Ty~G~~LiavNP~~~l~-~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~y 79 (276)
||+.+|||+||||..++ +|++++++.|+|+..+.+||||||||+.|||.|..-+.+||||+||||||||||++|.+++|
T Consensus 88 tYVANILIavNPY~~I~~lYs~etIK~Y~GkSLGq~~PHvFAIADKa~RdMr~~k~SQSIIVSGESGAGKTEstK~vLrY 167 (1259)
T KOG0163|consen 88 TYVANILIAVNPYQEIDGLYSPETIKEYRGKSLGQLPPHVFAIADKAYRDMRVYKLSQSIIVSGESGAGKTESTKAVLRY 167 (1259)
T ss_pred hhhhhhheeccchhhcccccCHHHHHHhcCCcccCCCCceeeechHHHHHHHHHhhcccEEEecCCCCCcchhHHHHHHH
Confidence 89999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCcchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCCchH
Q psy17386 80 LCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYH 159 (276)
Q Consensus 80 L~~~~~~~~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~ErnfH 159 (276)
||..-++ ...++++|+++||||||||||||.+|+||||||||+++||+.+|.++|+-+.+||||||||+.|+.+|||||
T Consensus 168 Lces~gs-ag~Iq~rileaNPiLEAFGNAKT~RNNNSSRFGKFveiHf~dk~~VvGGyvSHYLLEkSRiC~Qaa~ERNYH 246 (1259)
T KOG0163|consen 168 LCESWGS-AGPIQTRILEANPILEAFGNAKTLRNNNSSRFGKFVEIHFDDKGQVVGGYVSHYLLEKSRICRQAAEERNYH 246 (1259)
T ss_pred HHhccCC-CCcHHHHHhccChHHHHhccchhhccCChhhccceEEEEEcCCCceechhhhHHHHHHhHHHHhhhcccchh
Confidence 9986554 567999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccChh--HH----HHcc------------------------------------------------------
Q psy17386 160 VFYQLVEAAQYSSS--IN----KEIM------------------------------------------------------ 179 (276)
Q Consensus 160 IFYqllaG~~~~~~--l~----~~~~------------------------------------------------------ 179 (276)
|||||+||++++-. |. +.|+
T Consensus 247 iFY~LiAGas~dl~~kL~L~~pd~f~YL~rG~t~yFan~~t~~ki~~nr~S~~~~~~~~~kD~iidD~~dF~rl~~Al~~ 326 (1259)
T KOG0163|consen 247 IFYQLIAGASPDLRKKLSLGKPDDFRYLKRGCTQYFANAKTEQKIPGNRKSKNHQQKGSLKDPIIDDYQDFHRLEKALKL 326 (1259)
T ss_pred HHHHHHcCCCHHHHHHhccCCchhhhHHhcchhhhccCcchhhcCcccccCccccccCcccCcccccHHHHHHHHHHHHh
Confidence 99999999986421 10 1111
Q ss_pred -CCChhh-------------------------------------------------------------------------
Q psy17386 180 -HYTSEE------------------------------------------------------------------------- 185 (276)
Q Consensus 180 -~~~~~d------------------------------------------------------------------------- 185 (276)
|++++|
T Consensus 327 ~Glsd~Ekl~i~s~vA~vLHLGNieFEE~~ddsrGGC~v~n~seqsL~~~a~LLGld~~elr~~L~aRvMqtt~GG~kGT 406 (1259)
T KOG0163|consen 327 LGLSDTEKLFIWSTVAAVLHLGNIEFEEIPDDSRGGCQVSNGSEQSLTIAAELLGLDQTELRTGLCARVMQTTKGGFKGT 406 (1259)
T ss_pred cCCChHHHHHHHHHHHHHHHccccchhcccCcCCCceecccCchhhHHHHHHHhCCCHHHHHHHHHHHHHHhccCCccce
Confidence 222221
Q ss_pred -------------hhhh------hhHHHHHHHHhhhccCCCCCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHH
Q psy17386 186 -------------KSHV------IWVFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFF 246 (276)
Q Consensus 186 -------------~rda------~~LF~wlv~~iN~~l~~~~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f 246 (276)
+||| ++||+|||.+||+++ |-..+..+||||||.|||.|.+||||||||||||||||+||
T Consensus 407 vIrVPLK~~eA~n~RDALaKaiYSkLFD~lV~~iNqsi-PFe~St~fiGVLDiAGFEyf~~NSFEQFCINyCNEKLQ~FF 485 (1259)
T KOG0163|consen 407 VIRVPLKIHEASNARDALAKAIYSKLFDWLVGRINQSI-PFEKSTFFIGVLDIAGFEYFAVNSFEQFCINYCNEKLQKFF 485 (1259)
T ss_pred EEEeeccHHhhcchHHHHHHHHHHHHHHHHHHHhhccc-ccccccceeEEEeeccceeeecccHHHHHHHHHHHHHHHHH
Confidence 4676 999999999999999 44557899999999999999999999999999999999999
Q ss_pred HHHhhHHHHHHHhhhCC-----------Cchhhhhh
Q psy17386 247 NHYVFALEQEIVSISIK-----------PRLELTES 271 (276)
Q Consensus 247 ~~~~f~~eq~eY~~E~~-----------~~~~~~~~ 271 (276)
|+.|++.|||.|++||+ .|+||||.
T Consensus 486 NerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~ 521 (1259)
T KOG0163|consen 486 NERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEA 521 (1259)
T ss_pred HHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHH
Confidence 99999999999999965 46667764
No 21
>KOG0160|consensus
Probab=100.00 E-value=6e-76 Score=594.30 Aligned_cols=264 Identities=48% Similarity=0.806 Sum_probs=236.9
Q ss_pred CcccCeEEEecCCCCCC-CCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386 1 TYTGTILVAVNPYKELD-IYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 1 Ty~G~~LiavNP~~~l~-~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~y 79 (276)
||.|.+||+||||+.+| +|+++.+..|+ ....++.||+|++|+.||+.|.....+|+||+|||||||||+++|.+|+|
T Consensus 39 ty~G~vLiAiNPf~~~~~ly~~~~i~~y~-~~~~~l~ph~favA~~ay~~m~~~~~~QsIivsGESGAgkT~~aK~~m~y 117 (862)
T KOG0160|consen 39 TYKGIVLIAINPFKRLPHLYGKKMISAYQ-AIQGELSPHLFAVAEEAYRDMTPDGVNQSIIVSGESGAGKTETAKYLMEY 117 (862)
T ss_pred hhhceeeeeeccccccchhccHHHHHhhc-ccccccCcchhhHHHHHHHHhhhccCCceeeeeCCCCCchhHHHHHHHHH
Confidence 89999999999999999 99999999999 88889999999999999999999999999999999999999999999999
Q ss_pred HHhhccCC-cchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCCch
Q psy17386 80 LCSVTSNV-STWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNY 158 (276)
Q Consensus 80 L~~~~~~~-~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~Ernf 158 (276)
|+.++++. ...+++++++++||+||||||||.+|+||||||||++++|+.+|+|.||++.|||||||||+.++++||||
T Consensus 118 la~v~~~~~~~~vE~~vL~snpi~EafgNakT~rndnsSrFgK~iei~Fd~~~~I~GA~~~TYLLekSRv~~~~~~erny 197 (862)
T KOG0160|consen 118 LASVGGSVEGRSIENKVLASNPILEAFGNAKTTRNDNSSRFGKVIEITFDQQGRISGAKIRTYLLEKSRVVQLSAPERNY 197 (862)
T ss_pred HHHHhccchhhHHHHHHHhcCCcchhhccchhhhcccHHHhhhHHHHhhhhhcccccceeeeEEeecceeeecCccccch
Confidence 99998763 45789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccCh-hHH----H--------------------Hcc---------CCChh--------------------
Q psy17386 159 HVFYQLVEAAQYSS-SIN----K--------------------EIM---------HYTSE-------------------- 184 (276)
Q Consensus 159 HIFYqllaG~~~~~-~l~----~--------------------~~~---------~~~~~-------------------- 184 (276)
|||||+|+|...+. +++ . .|. +.+.+
T Consensus 198 hiFyQlca~~~~~~~~l~L~~~~~f~yl~q~~~~~i~~v~d~~e~~~t~~A~~~vgi~~~~q~~if~lla~ilhlGni~f 277 (862)
T KOG0160|consen 198 HIFYQLCAGAPEELEKLKLGTLRRFSYLNQSACVLISGVSDAEEFLSTTEAMLFVGISESHQELIFRLLAAILHLGNIQF 277 (862)
T ss_pred HHHHHHhcCCchhhhccCcCccccceecccccchhhcccccHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhccCceEe
Confidence 99999999976210 000 0 000 00000
Q ss_pred -------------h-------------------------------------------hhhh------hhHHHHHHHHhhh
Q psy17386 185 -------------E-------------------------------------------KSHV------IWVFAWLVNHINT 202 (276)
Q Consensus 185 -------------d-------------------------------------------~rda------~~LF~wlv~~iN~ 202 (276)
| .||+ ++||+|+|++||.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~a~Llg~~~~~l~~~L~~r~i~~~~e~i~k~l~~~qa~~~rD~lak~iys~LFdwlV~~in~ 357 (862)
T KOG0160|consen 278 SSGVEETSSSPVDDHLWTAAELLGCDEEALEQWLSKRKILTARESIVKPLTLSQAVKRRDALAKQLYSLLFDWLVAKING 357 (862)
T ss_pred ecccccccccccchHHHHHHHHhCCCHHHHHHHHHHHHhhcccceeecccCHHHHHHhhhhhHHHHHHHHHHHHHHHhhc
Confidence 0 3454 9999999999999
Q ss_pred ccCCCC-CCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCc
Q psy17386 203 CTNPGQ-DSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPR 265 (276)
Q Consensus 203 ~l~~~~-~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~ 265 (276)
.|.... ....+||||||||||.|+.||||||||||+||||||.|++|+|+.||+||.+|+++|
T Consensus 358 sL~~~~~~~~~~igVLDiYgFEsF~~nsfeQfcINyanEkLqq~fnqHvfk~Eqeey~~e~i~W 421 (862)
T KOG0160|consen 358 SLGANDPKAERFIGVLDIYGFESFEVNSFEQFCINYANEKLQQQFNQHVFKLEQEEYTKEEIDW 421 (862)
T ss_pred ccccCCCCccceeeeehcccccccccCcHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhhcccc
Confidence 997533 347899999999999999999999999999999999999999999999999997766
No 22
>KOG4229|consensus
Probab=100.00 E-value=2.1e-66 Score=535.45 Aligned_cols=268 Identities=45% Similarity=0.716 Sum_probs=243.8
Q ss_pred CcccCeEEEecCCCCCC-CCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386 1 TYTGTILVAVNPYKELD-IYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 1 Ty~G~~LiavNP~~~l~-~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~y 79 (276)
||.|.+|++||||+.++ +|.+..++.|.++++++.|||||++|+.||+.|+....+|||+++||||||||+++++++++
T Consensus 92 ~y~gsil~~lnp~~~~~fiy~~~~~~ly~~~~~ge~~phifa~ad~~y~~m~~~~~~QcivisGesgsGktest~l~~~~ 171 (1062)
T KOG4229|consen 92 EYLGSILVALNPLQPIPFLYLPRFSKLYSGKPLGEDPPHIFAIADLAYQDMLREKEDQCIVISGESGSGKTESTKLLWQF 171 (1062)
T ss_pred eeechhhhhcCccccccccccHHhhccccccccCCCCcchhhhhhhHHHhhhhhccceeEEEecccCCCCchhhHHHHHH
Confidence 79999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCcchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCCchH
Q psy17386 80 LCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYH 159 (276)
Q Consensus 80 L~~~~~~~~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~ErnfH 159 (276)
|+.++.+...+.+.+|+.++++||+||||+|.+|+||||||||+++.|..+|.+.||++..|||||+||+.|..+|||||
T Consensus 172 Ls~Lsq~~~~~~e~~il~a~~llEafgnA~t~~ndnssrfgk~i~~~~~~~g~i~Gaki~~yllEKsr~~~q~~~e~nyh 251 (1062)
T KOG4229|consen 172 LSILSQGNNSPVEQLILSANPLLEAFGNAKTPRNDNSSRFGKYIKVNFRKTGIIEGAKIVEYLLEKSRLVIQAGGERNYH 251 (1062)
T ss_pred HHHHhcCCCCchhhhhhcchHHHHHhcccCCcccCchhhhhheEEeccccCCCCCcchHHHHHHHHHHHHHhcCCCcccc
Confidence 99999555678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccChhHH------HHcc------------------------------CCChhh------------------
Q psy17386 160 VFYQLVEAAQYSSSIN------KEIM------------------------------HYTSEE------------------ 185 (276)
Q Consensus 160 IFYqllaG~~~~~~l~------~~~~------------------------------~~~~~d------------------ 185 (276)
|||++++|+..++... +.|. +|+.++
T Consensus 252 ify~~~agl~~~e~~~~~l~~~e~y~yL~~~~~~~~~d~~~~~~~~~~l~~~m~v~~f~~~~~~si~~~la~il~~gni~ 331 (1062)
T KOG4229|consen 252 IFYYLLAGLSENELKAFVLGEAENYEYLEQGALFTISDGEDDVAQFIRLEAAMSVVGFTDKVLGSIFKSLAAILHIGNIS 331 (1062)
T ss_pred cchhheeccchhhhhHHhhcCCCCHHHhhccccccccchHHHHHhHHHHHHHHHHhccchhHHHHHHHhcccceeeccee
Confidence 9999999998743211 1111 110000
Q ss_pred -------------------------------------------------------------hhhh------hhHHHHHHH
Q psy17386 186 -------------------------------------------------------------KSHV------IWVFAWLVN 198 (276)
Q Consensus 186 -------------------------------------------------------------~rda------~~LF~wlv~ 198 (276)
.||| .+||.|||.
T Consensus 332 ~~~~~~~~~d~~~v~~~~~v~~vA~lL~~~~~~l~~alt~~~~~~~ge~~~~~l~~~~A~d~rda~ak~ly~~lf~~iv~ 411 (1062)
T KOG4229|consen 332 YIKFALDQQDSAEVENEEAVERVACLLLIKEKLLQEALTARVNVTRGELLLAPLLVERAVDVRDAMAKTLYGRLFDWIVL 411 (1062)
T ss_pred HHhhhcccccchhcccchHHHHHHHHhhcCHHHhhhhhcccceeeehhhhhhhhhHHHhccCchHHHHHHHHHHHHHHHh
Confidence 3454 999999999
Q ss_pred HhhhccCCCCC--CcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCchhh
Q psy17386 199 HINTCTNPGQD--STRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPRLEL 268 (276)
Q Consensus 199 ~iN~~l~~~~~--~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~~~~ 268 (276)
+||..+.+..+ ...+||||||||||+|..|||||+|||||||+||+||++|+|..||+||..|+|+|-++
T Consensus 412 rIn~~~~~~~~~~~~~~IgiLdiFgfE~f~~nsfEq~~in~Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i 483 (1062)
T KOG4229|consen 412 RINAALSPESDISDILSIGILDIFGFENFERNSFEQLCINLANEQLQYYFNQHIFALEQEEYDNESIDWRNI 483 (1062)
T ss_pred hHHhccCccccccccceeehhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCeeee
Confidence 99999977654 36899999999999999999999999999999999999999999999999999999765
No 23
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=98.84 E-value=5.8e-09 Score=90.30 Aligned_cols=87 Identities=22% Similarity=0.175 Sum_probs=63.7
Q ss_pred hhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHhhccCCcchHHHHHHHhHHHHHHhc-CCccccCCCCC
Q psy17386 39 VFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFG-NAKTVRNDNSS 117 (276)
Q Consensus 39 ifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~~~~~~~~~~~~i~~a~~ILeaFG-nAkT~~N~nSS 117 (276)
||..+..++..++. +.|++|+..|++|||||+++.--. ... +--....+.+.+.....+++. ++.|..|.+||
T Consensus 8 vf~~~~~~v~~~~~-G~n~~i~~yG~tGsGKT~Tm~G~~----~~~-Giip~~~~~~~~ll~~g~~~R~~~~t~~N~~SS 81 (186)
T cd01363 8 VFRDVGPLLQSALD-GYNVCIFAYGQTGSGKTYTMEGKR----EGA-GIIPRTVTDVIDLMDKGNANRTTAATAMNEHSS 81 (186)
T ss_pred HHHHHHHHHHHHhC-CcceeEEEECCCCCcceEecCCCC----CCC-CcchHHHHHHHHHHhhccccccccccCCCCccC
Confidence 88888888888885 589999999999999998753110 000 000111222556666777888 89999999999
Q ss_pred cccccEEEEecCCC
Q psy17386 118 RFGKFMQVCFDPKW 131 (276)
Q Consensus 118 Rfgk~~~l~f~~~g 131 (276)
|+..+++|++....
T Consensus 82 RsH~i~~i~v~~~~ 95 (186)
T cd01363 82 RSHSVFRIHFGGKN 95 (186)
T ss_pred cccEEEEEEEEEee
Confidence 99999999987543
No 24
>KOG0925|consensus
Probab=96.63 E-value=0.0019 Score=63.66 Aligned_cols=64 Identities=31% Similarity=0.375 Sum_probs=45.6
Q ss_pred EEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHH-HHHHHH
Q psy17386 8 VAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETT-KFILQY 79 (276)
Q Consensus 8 iavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~-k~il~y 79 (276)
.++|||...| |++...+.++ .+.++|-+-+ -+.-|..-.++|+||+.||.|||||+-. +.++.|
T Consensus 22 k~~Npf~~~p-~s~rY~~ilk--~R~~LPvw~~-----k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~ 86 (699)
T KOG0925|consen 22 KAINPFNGKP-YSQRYYDILK--KRRELPVWEQ-----KEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEY 86 (699)
T ss_pred hhcCCCCCCc-CcHHHHHHHH--HHhcCchHHh-----HHHHHHHHhcCceEEEEecCCCCccccCcHHHHHH
Confidence 3499999998 7777666665 3446775543 2344555678999999999999999864 344444
No 25
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.60 E-value=0.0019 Score=50.91 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=21.2
Q ss_pred eEEEeCCCCCChhHHHHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL 80 (276)
.|+|+|.||||||+.++.+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999875
No 26
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.24 E-value=0.0079 Score=47.20 Aligned_cols=30 Identities=27% Similarity=0.387 Sum_probs=25.9
Q ss_pred hcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 52 NLDVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 52 ~~~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.......+++.|++|+|||..++.+.+.+.
T Consensus 15 ~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 15 ELPPPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred hCCCCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 344567899999999999999999999875
No 27
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.18 E-value=0.0042 Score=49.32 Aligned_cols=29 Identities=34% Similarity=0.433 Sum_probs=21.3
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
++..+++++|++|+|||..++.+++-+..
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~ 30 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNA 30 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHH
Confidence 35678999999999999999999998764
No 28
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.13 E-value=0.0047 Score=48.55 Aligned_cols=22 Identities=41% Similarity=0.468 Sum_probs=20.8
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q psy17386 59 CVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 59 IiisGeSGsGKTe~~k~il~yL 80 (276)
|+|+|.+|||||+.++.+.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999996
No 29
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.01 E-value=0.0058 Score=51.18 Aligned_cols=33 Identities=27% Similarity=0.431 Sum_probs=22.9
Q ss_pred HhcCCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 51 QNLDVNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 51 ~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
......+.+++.|++|+|||...+.+++.+..-
T Consensus 19 ~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 19 AQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp TSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 355677899999999999999999999998875
No 30
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.79 E-value=0.008 Score=46.52 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=24.8
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
.+.+++.|.+|+|||+.++.+...+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 4789999999999999999998887764
No 31
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.78 E-value=0.0085 Score=47.23 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=21.6
Q ss_pred EEEeCCCCCChhHHHHHHHHHHH
Q psy17386 59 CVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 59 IiisGeSGsGKTe~~k~il~yL~ 81 (276)
|++.|.+|+|||+.++.+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 78999999999999999999974
No 32
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.75 E-value=0.0091 Score=50.55 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=21.8
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
+.|+|+|.||||||+.++.+...+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999998877753
No 33
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.69 E-value=0.012 Score=42.67 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=20.6
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q psy17386 59 CVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 59 IiisGeSGsGKTe~~k~il~yL 80 (276)
|.++|.+|||||+.++.+.+.|
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999987
No 34
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.48 E-value=0.029 Score=48.94 Aligned_cols=40 Identities=23% Similarity=0.124 Sum_probs=31.2
Q ss_pred HHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 43 AEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 43 A~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
+-.+.+.+........|++.|++|+|||..++.+.+++..
T Consensus 25 ~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~ 64 (226)
T TIGR03420 25 LLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE 64 (226)
T ss_pred HHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3344455544566789999999999999999999988764
No 35
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.43 E-value=0.016 Score=50.50 Aligned_cols=27 Identities=33% Similarity=0.351 Sum_probs=24.1
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
.+...|.|+|.||||||+.++.+.+.|
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356689999999999999999999987
No 36
>PRK06762 hypothetical protein; Provisional
Probab=95.40 E-value=0.017 Score=48.32 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=22.8
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...|+++|.+|||||+.++.+.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999987
No 37
>PRK07261 topology modulation protein; Provisional
Probab=95.38 E-value=0.015 Score=49.58 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=20.9
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL 80 (276)
+-|+|.|.||||||+.++.+.+.+
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHh
Confidence 358999999999999999987764
No 38
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.36 E-value=0.015 Score=50.26 Aligned_cols=27 Identities=37% Similarity=0.368 Sum_probs=24.0
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
..+.|++.|.||||||+.++.+.+.+-
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 457899999999999999999998863
No 39
>PRK06696 uridine kinase; Validated
Probab=95.34 E-value=0.028 Score=49.71 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=26.0
Q ss_pred cCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 53 LDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 53 ~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
..+.--|.|+|.||||||+.++.+.+.|..
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 446678999999999999999999999853
No 40
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.31 E-value=0.017 Score=48.84 Aligned_cols=29 Identities=28% Similarity=0.279 Sum_probs=25.5
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.+...|++.|.+|||||+.++.+.+.|..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 35568999999999999999999999864
No 41
>PRK08118 topology modulation protein; Reviewed
Probab=95.31 E-value=0.016 Score=49.18 Aligned_cols=25 Identities=20% Similarity=0.405 Sum_probs=22.1
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
+-|+|.|.+|||||+.++.+-+.+-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999988753
No 42
>PRK08233 hypothetical protein; Provisional
Probab=95.23 E-value=0.014 Score=48.97 Aligned_cols=25 Identities=32% Similarity=0.332 Sum_probs=22.6
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.-|.|+|.+|||||+.++.+.+.|.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5688999999999999999999885
No 43
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.20 E-value=0.022 Score=47.34 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=23.5
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
....|++.|.+|||||+.++.+-+.|
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998886
No 44
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.19 E-value=0.017 Score=50.30 Aligned_cols=25 Identities=24% Similarity=0.593 Sum_probs=22.5
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 58 SCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.|+|+|.+|||||+..+.+++++..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4899999999999999999998764
No 45
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.18 E-value=0.019 Score=46.40 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=20.5
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q psy17386 59 CVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 59 IiisGeSGsGKTe~~k~il~yL 80 (276)
|+|+|.+|||||+.++.+.+.+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999998876
No 46
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.16 E-value=0.026 Score=47.89 Aligned_cols=29 Identities=24% Similarity=0.276 Sum_probs=25.2
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhc
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLCSVT 84 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~~~~ 84 (276)
.-.|.++|.||||||+.++.+-+.|-..+
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g 30 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARG 30 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 34789999999999999999999998654
No 47
>PF05729 NACHT: NACHT domain
Probab=95.15 E-value=0.023 Score=46.40 Aligned_cols=27 Identities=33% Similarity=0.405 Sum_probs=23.9
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHhhc
Q psy17386 58 SCVISGESGAGKTETTKFILQYLCSVT 84 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL~~~~ 84 (276)
.++|+|+.|+|||..++.++..+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 589999999999999999998887654
No 48
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.13 E-value=0.017 Score=49.86 Aligned_cols=25 Identities=40% Similarity=0.429 Sum_probs=22.6
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 59 CVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 59 IiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
|-|+|.||||||+.++.+...|-..
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCcc
Confidence 6799999999999999999999743
No 49
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.11 E-value=0.029 Score=51.81 Aligned_cols=54 Identities=15% Similarity=0.191 Sum_probs=33.6
Q ss_pred HHhhcCcCCCCCCchhHHHHHHHHHhHhcC-CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 25 CEYHGAKMGSQEPHVFALAEAAYSSLQNLD-VNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 25 ~~y~~~~~~~~pPHifavA~~Ay~~m~~~~-~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
++|+-+...++-.|-- .....+.....+ -+..++++|++|+|||+.++.+.+.+
T Consensus 13 ~kyrP~~~~~~~~~~~--~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 13 QKYRPSTIDECILPAA--DKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred eccCCCcHHHhcCcHH--HHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 4555555444433321 122344443333 45677779999999999999998875
No 50
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.03 E-value=0.019 Score=47.68 Aligned_cols=23 Identities=39% Similarity=0.576 Sum_probs=20.8
Q ss_pred eEEEeCCCCCChhHHHHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL 80 (276)
.|+++|++|||||+.++.+.+.|
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999998865
No 51
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.01 E-value=0.025 Score=47.97 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=21.9
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
.+-|+++|.||||||+.+|.+.+-+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3579999999999999999888765
No 52
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.00 E-value=0.042 Score=50.82 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=28.0
Q ss_pred HHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 47 YSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 47 y~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.+.+...+....+++.|++|+|||+.++.+.+.+..
T Consensus 27 L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 27 LSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred HHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 344444454457999999999999999999998753
No 53
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.97 E-value=0.035 Score=49.74 Aligned_cols=28 Identities=36% Similarity=0.449 Sum_probs=23.9
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.....+++.|++|+|||+.++.+.+.+.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3456799999999999999999988765
No 54
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.94 E-value=0.022 Score=49.07 Aligned_cols=22 Identities=41% Similarity=0.566 Sum_probs=20.4
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q psy17386 59 CVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 59 IiisGeSGsGKTe~~k~il~yL 80 (276)
|.|+|.||||||+.++.+...|
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998887
No 55
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.93 E-value=0.055 Score=44.70 Aligned_cols=28 Identities=36% Similarity=0.475 Sum_probs=24.3
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.....|++.|+.|||||+.+|.+.+.|-
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3456899999999999999999998874
No 56
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.92 E-value=0.024 Score=45.11 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.4
Q ss_pred CCceEEEeCCCCCChhHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il 77 (276)
..+.+.+.|+||||||+.++.++
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 45789999999999999999876
No 57
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.92 E-value=0.026 Score=49.23 Aligned_cols=27 Identities=33% Similarity=0.358 Sum_probs=23.5
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
+...|.|+|.||||||+.++.+...+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456788999999999999999988765
No 58
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=94.90 E-value=0.025 Score=47.68 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=21.7
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~y 79 (276)
....|+|+|.||+|||+.+..+++.
T Consensus 13 ~g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 13 GGIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3678999999999999999877765
No 59
>PRK06547 hypothetical protein; Provisional
Probab=94.90 E-value=0.048 Score=46.71 Aligned_cols=29 Identities=24% Similarity=0.204 Sum_probs=24.8
Q ss_pred hcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 52 NLDVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 52 ~~~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
......-|+|+|.||||||+.++.+.+-+
T Consensus 11 ~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 11 CGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred hcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35667889999999999999999988764
No 60
>PLN03025 replication factor C subunit; Provisional
Probab=94.88 E-value=0.041 Score=51.40 Aligned_cols=56 Identities=20% Similarity=0.215 Sum_probs=40.1
Q ss_pred HHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 24 VCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 24 ~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
+++|+-+...++-.|--.+ ...+.+...+.-..+++.|.+|+|||+.++.+.+.+.
T Consensus 4 ~~kyrP~~l~~~~g~~~~~--~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 4 VEKYRPTKLDDIVGNEDAV--SRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred hhhcCCCCHHHhcCcHHHH--HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 4566666655554443322 3456666666667899999999999999999998874
No 61
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.88 E-value=0.038 Score=50.51 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=27.0
Q ss_pred HHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 46 AYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 46 Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.++.+... ..-.|+|+|++|||||++.+.++.++..
T Consensus 71 ~l~~~~~~-~~GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 71 IFRKLLEK-PHGIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred HHHHHHhc-CCCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 34444432 2346999999999999999999988753
No 62
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.86 E-value=0.037 Score=52.26 Aligned_cols=34 Identities=26% Similarity=0.404 Sum_probs=27.3
Q ss_pred HHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 47 YSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 47 y~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
++.++..+. .|+|+|.+|||||+.++.++.++..
T Consensus 137 L~~~v~~~~--nilI~G~tGSGKTTll~aL~~~i~~ 170 (323)
T PRK13833 137 IRSAIDSRL--NIVISGGTGSGKTTLANAVIAEIVA 170 (323)
T ss_pred HHHHHHcCC--eEEEECCCCCCHHHHHHHHHHHHhc
Confidence 444555554 5999999999999999999998764
No 63
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.84 E-value=0.06 Score=48.17 Aligned_cols=40 Identities=15% Similarity=0.084 Sum_probs=31.3
Q ss_pred HHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 43 AEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 43 A~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
|-.+.+.+........+++.|.+|+|||..++.+.+.+..
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~ 71 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQ 71 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4455555555556679999999999999999988888764
No 64
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.81 E-value=0.039 Score=51.86 Aligned_cols=37 Identities=27% Similarity=0.416 Sum_probs=29.9
Q ss_pred HHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 46 AYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 46 Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
+++.......+.+++|+|++|+|||..++.+++.|..
T Consensus 30 ~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 30 ALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred HHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3344444567789999999999999999999998864
No 65
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.78 E-value=0.027 Score=48.09 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=21.0
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 59 CVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 59 IiisGeSGsGKTe~~k~il~yL~~ 82 (276)
|+|+|++|+|||+..+.+++.|..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 899999999999999999998754
No 66
>KOG0924|consensus
Probab=94.76 E-value=0.069 Score=54.85 Aligned_cols=115 Identities=24% Similarity=0.293 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHhhccCCcc---hHH-HH---HHHhHHHHHHhcCCccc
Q psy17386 39 VFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCSVTSNVST---WVE-QQ---ILEANTILEAFGNAKTV 111 (276)
Q Consensus 39 ifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~~~~~~~---~~~-~~---i~~a~~ILeaFGnAkT~ 111 (276)
||++-++- |..-+.||.|||.||+|||||+ .+-|||..-+-.... ..+ .| +.-|..+-|-.|.---.
T Consensus 357 vf~~R~~l---l~~ir~n~vvvivgETGSGKTT---Ql~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~ 430 (1042)
T KOG0924|consen 357 VFACRDQL---LSVIRENQVVVIVGETGSGKTT---QLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGD 430 (1042)
T ss_pred hHHHHHHH---HHHHhhCcEEEEEecCCCCchh---hhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCcccc
Confidence 66666544 4445789999999999999998 678888764322110 011 11 22233344444222111
Q ss_pred cCCCCCcc----cccEEEEecCCCceeeeeeeeeecccccccc-cCCCCCchH
Q psy17386 112 RNDNSSRF----GKFMQVCFDPKWMIKGCIIQDYLLEQSRITF-QSPGERNYH 159 (276)
Q Consensus 112 ~N~nSSRf----gk~~~l~f~~~g~i~ga~i~~yLLEksRV~~-~~~~ErnfH 159 (276)
.=.-|=|| +.-..|-|-.+|.+.--.+..-+|+|-+|+- -...||.-+
T Consensus 431 ~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslN 483 (1042)
T KOG0924|consen 431 TVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLN 483 (1042)
T ss_pred ccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccc
Confidence 11223343 3344566666777666667777788877764 556788654
No 67
>PF12846 AAA_10: AAA-like domain
Probab=94.74 E-value=0.031 Score=50.16 Aligned_cols=30 Identities=33% Similarity=0.447 Sum_probs=25.8
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcc
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLCSVTS 85 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~~~~~ 85 (276)
|..++|.|.+|||||+.++.++..+...+.
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g~ 30 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRGP 30 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcCC
Confidence 456899999999999999999988887654
No 68
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.73 E-value=0.033 Score=47.73 Aligned_cols=24 Identities=38% Similarity=0.603 Sum_probs=22.8
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL~ 81 (276)
++++.|.||+|||+.++.+-++|-
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~ 28 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLF 28 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 589999999999999999999988
No 69
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.70 E-value=0.026 Score=49.35 Aligned_cols=25 Identities=36% Similarity=0.421 Sum_probs=22.5
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
..-||+||.||+|||+.+|.+++-.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4568999999999999999999886
No 70
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.69 E-value=0.024 Score=45.73 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.8
Q ss_pred EEEeCCCCCChhHHHHHHHHHHH
Q psy17386 59 CVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 59 IiisGeSGsGKTe~~k~il~yL~ 81 (276)
|+++|.+|||||+.++.+.+.+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 89999999999999999987764
No 71
>PTZ00301 uridine kinase; Provisional
Probab=94.69 E-value=0.028 Score=49.77 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=20.4
Q ss_pred EEEeCCCCCChhHHHHHHHHHHH
Q psy17386 59 CVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 59 IiisGeSGsGKTe~~k~il~yL~ 81 (276)
|-|+|-||||||+.++.+.+.|.
T Consensus 6 IgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred EEEECCCcCCHHHHHHHHHHHHH
Confidence 67899999999999999987763
No 72
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.67 E-value=0.03 Score=48.08 Aligned_cols=24 Identities=38% Similarity=0.401 Sum_probs=21.9
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 59 CVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 59 IiisGeSGsGKTe~~k~il~yL~~ 82 (276)
|.|+|.||||||+.++.+.+.|..
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999999863
No 73
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.63 E-value=0.029 Score=48.22 Aligned_cols=26 Identities=31% Similarity=0.566 Sum_probs=22.8
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
...|+++|++|||||+..+.++..+-
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 46799999999999999999888764
No 74
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=94.62 E-value=0.061 Score=49.28 Aligned_cols=37 Identities=19% Similarity=0.208 Sum_probs=28.5
Q ss_pred HHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 45 AAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 45 ~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
...+.....+....++++|++|+|||+.++.+.+.+.
T Consensus 27 ~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 27 ERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 3455555555445689999999999999999988874
No 75
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.59 E-value=0.026 Score=52.95 Aligned_cols=28 Identities=36% Similarity=0.402 Sum_probs=25.5
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
++.+.+=|-||||||||.+++.||+.|-
T Consensus 29 ~~GE~lgiVGESGsGKS~~~~aim~llp 56 (316)
T COG0444 29 KKGEILGIVGESGSGKSVLAKAIMGLLP 56 (316)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHhccC
Confidence 4668899999999999999999999986
No 76
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.57 E-value=0.052 Score=50.58 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=27.1
Q ss_pred HHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 47 YSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 47 y~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
++.+... ...|+++|.+|||||+.++.+++++..
T Consensus 125 L~~~v~~--~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 125 LREAVLA--RKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred HHHHHHc--CCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 3344443 357999999999999999999999865
No 77
>PRK06217 hypothetical protein; Validated
Probab=94.55 E-value=0.03 Score=47.92 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=21.5
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL~ 81 (276)
-|+|+|-||||||+.++.+-+.|-
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 499999999999999999888763
No 78
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.54 E-value=0.043 Score=46.34 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=25.0
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
+...|++.|.+|||||+.++.+.+.|..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999999864
No 79
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.52 E-value=0.074 Score=47.19 Aligned_cols=32 Identities=25% Similarity=0.301 Sum_probs=27.5
Q ss_pred cCCCceEEEeCCCCCChhHHHHHHHHHHHhhc
Q psy17386 53 LDVNQSCVISGESGAGKTETTKFILQYLCSVT 84 (276)
Q Consensus 53 ~~~~QsIiisGeSGsGKTe~~k~il~yL~~~~ 84 (276)
..+...|.|+|.+|||||+.++.+...|...+
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~ 61 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDG 61 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhcc
Confidence 35678899999999999999999999887644
No 80
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=94.51 E-value=0.027 Score=52.21 Aligned_cols=20 Identities=35% Similarity=0.615 Sum_probs=17.2
Q ss_pred ceEEEeCCCCCChhHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFI 76 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~i 76 (276)
+-|||+|.||||||++.+.+
T Consensus 2 ~~vIiTGlSGaGKs~Al~~l 21 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRAL 21 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHH
Confidence 46999999999999987654
No 81
>PF13245 AAA_19: Part of AAA domain
Probab=94.51 E-value=0.062 Score=39.92 Aligned_cols=28 Identities=29% Similarity=0.319 Sum_probs=23.2
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.+...++.|..|||||++...++.++..
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~ 36 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELLA 36 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4566778999999999888888888774
No 82
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.50 E-value=0.035 Score=43.54 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=22.0
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 59 CVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 59 IiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
|.|.|++|.|||..++.+.+.|...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 6799999999999999998887753
No 83
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.50 E-value=0.025 Score=47.03 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.7
Q ss_pred EEEeCCCCCChhHHHHHHHHHHH
Q psy17386 59 CVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 59 IiisGeSGsGKTe~~k~il~yL~ 81 (276)
|++.|.+|||||+.++.+-+.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 67899999999999999998864
No 84
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.44 E-value=0.029 Score=46.05 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=20.4
Q ss_pred EEEeCCCCCChhHHHHHHHHHHH
Q psy17386 59 CVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 59 IiisGeSGsGKTe~~k~il~yL~ 81 (276)
|+|+|.||||||+.++.+++.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 78999999999999999988753
No 85
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.44 E-value=0.027 Score=47.49 Aligned_cols=25 Identities=40% Similarity=0.392 Sum_probs=22.0
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
+-|++.|.||||||+.++.+.+.+.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCc
Confidence 5689999999999999999988653
No 86
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.44 E-value=0.038 Score=45.93 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=22.0
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 59 CVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 59 IiisGeSGsGKTe~~k~il~yL~~ 82 (276)
|+++|.+|||||+.++.+.+.+..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999999863
No 87
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.39 E-value=0.03 Score=48.00 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=21.3
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL 80 (276)
+.|+|+|.||||||+..+.+...+
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 579999999999999999997764
No 88
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.37 E-value=0.09 Score=50.12 Aligned_cols=58 Identities=17% Similarity=0.248 Sum_probs=40.4
Q ss_pred HHHHhhcCcCCCCCCchhHHHHHHHHHhHhc-CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 23 KVCEYHGAKMGSQEPHVFALAEAAYSSLQNL-DVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 23 ~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~-~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
..++|+-+...++--|-..+ +.++.++.. +-+++++++|+.|+|||+.++.+.+.|-+
T Consensus 6 l~~kyrP~~~~~iiGq~~~~--~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 6 LARKWRPQYFRDIIGQKHIV--TAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred HHHHhCCCchhhccChHHHH--HHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 35677766666654333222 234555444 56789999999999999999999998853
No 89
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.34 E-value=0.034 Score=48.22 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=22.7
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
..-.||++|.||||||+.++.+++.+
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 34569999999999999999998875
No 90
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.34 E-value=0.037 Score=49.22 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.3
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 59 CVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 59 IiisGeSGsGKTe~~k~il~yL~~ 82 (276)
|-|+|.||||||+.++.+...|..
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhh
Confidence 568999999999999999998853
No 91
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.27 E-value=0.041 Score=44.91 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.5
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL~ 81 (276)
+|++.|.+|||||+.++.+-+.|-
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999988763
No 92
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.18 E-value=0.1 Score=45.94 Aligned_cols=29 Identities=14% Similarity=0.244 Sum_probs=25.2
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.....+++.|++|+|||..++.+.+.+..
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~ 68 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASY 68 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45678999999999999999999887654
No 93
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.17 E-value=0.048 Score=44.05 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=22.0
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 59 CVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 59 IiisGeSGsGKTe~~k~il~yL~~ 82 (276)
+++.|.+|+|||+.++.++..++.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~ 25 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT 25 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh
Confidence 689999999999999999998875
No 94
>PRK13342 recombination factor protein RarA; Reviewed
Probab=94.14 E-value=0.069 Score=51.79 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=30.4
Q ss_pred HHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 45 AAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 45 ~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+...+...++++.|++|+|||+.++.+.+.+
T Consensus 25 ~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 25 KPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred hHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 456777777777899999999999999999987764
No 95
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.14 E-value=0.045 Score=46.15 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.4
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL 80 (276)
..|++.|.+|||||+.++.+.+.+
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999998775
No 96
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.13 E-value=0.073 Score=50.60 Aligned_cols=34 Identities=26% Similarity=0.275 Sum_probs=28.4
Q ss_pred HhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 49 SLQNLDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 49 ~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.......+..++|+|.+|+|||..++.+++.+..
T Consensus 48 ~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~ 81 (394)
T PRK00411 48 PALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEE 81 (394)
T ss_pred HHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3344566788999999999999999999998854
No 97
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.09 E-value=0.065 Score=50.74 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=22.4
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
..|+++|.+|||||+..+.++.++.
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCC
Confidence 4599999999999999999888864
No 98
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.07 E-value=0.042 Score=47.90 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=20.3
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q psy17386 59 CVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 59 IiisGeSGsGKTe~~k~il~yL 80 (276)
|.|+|-||||||+.++.+.+.+
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998886
No 99
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.05 E-value=0.06 Score=46.64 Aligned_cols=30 Identities=20% Similarity=0.170 Sum_probs=26.2
Q ss_pred cCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 53 LDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 53 ~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
..+...|.++|.||||||+.++.+.+.|..
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~ 50 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHE 50 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 356789999999999999999999998854
No 100
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.02 E-value=0.05 Score=47.63 Aligned_cols=26 Identities=31% Similarity=0.298 Sum_probs=22.6
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~y 79 (276)
....-|||+|.||+|||+.++.+.+.
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 46688999999999999999888764
No 101
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=93.96 E-value=0.055 Score=51.52 Aligned_cols=26 Identities=23% Similarity=0.471 Sum_probs=22.8
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
...|+++|.+|||||+.++.++.++.
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccC
Confidence 35699999999999999999988864
No 102
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=93.95 E-value=0.039 Score=50.60 Aligned_cols=19 Identities=32% Similarity=0.613 Sum_probs=16.4
Q ss_pred eEEEeCCCCCChhHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFI 76 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~i 76 (276)
-|||||.||||||.+.+-+
T Consensus 3 lvIVTGlSGAGKsvAl~~l 21 (286)
T COG1660 3 LVIVTGLSGAGKSVALRVL 21 (286)
T ss_pred EEEEecCCCCcHHHHHHHH
Confidence 4899999999999987654
No 103
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=93.93 E-value=0.041 Score=49.79 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=24.4
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
....|+++|+.|||||+..+.+++++-.
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~ 153 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPP 153 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHT
T ss_pred cceEEEEECCCccccchHHHHHhhhccc
Confidence 4577999999999999999999888654
No 104
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.93 E-value=0.058 Score=51.09 Aligned_cols=35 Identities=20% Similarity=0.427 Sum_probs=26.9
Q ss_pred HHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 47 YSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 47 y~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
+..+.. .....|+++|.+|||||++.+.+++++..
T Consensus 114 l~~~~~-~~~g~ili~G~tGSGKTT~l~al~~~i~~ 148 (343)
T TIGR01420 114 LRELAE-RPRGLILVTGPTGSGKSTTLASMIDYINK 148 (343)
T ss_pred HHHHHh-hcCcEEEEECCCCCCHHHHHHHHHHhhCc
Confidence 344443 23577999999999999999999988653
No 105
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.90 E-value=0.048 Score=44.62 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=19.7
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q psy17386 59 CVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 59 IiisGeSGsGKTe~~k~il~yL 80 (276)
|+++|.+|||||+.++.+.+-+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 7899999999999999987764
No 106
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=93.85 E-value=0.051 Score=52.02 Aligned_cols=29 Identities=24% Similarity=0.396 Sum_probs=25.6
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
..--|+++|++|||||++.+.+++++...
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~~ 161 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAEA 161 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 45789999999999999999999998653
No 107
>PRK04182 cytidylate kinase; Provisional
Probab=93.84 E-value=0.051 Score=45.43 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=20.6
Q ss_pred eEEEeCCCCCChhHHHHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL 80 (276)
.|+|+|.+|||||+.++.+.+-|
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999988765
No 108
>PRK12377 putative replication protein; Provisional
Probab=93.83 E-value=0.12 Score=47.11 Aligned_cols=43 Identities=23% Similarity=0.237 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 39 VFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 39 ifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
++..|..-.+... . ..+.++++|.+|+|||..+..|.+.|..-
T Consensus 86 a~~~a~~~a~~~~-~-~~~~l~l~G~~GtGKThLa~AIa~~l~~~ 128 (248)
T PRK12377 86 ALSQAKSIADELM-T-GCTNFVFSGKPGTGKNHLAAAIGNRLLAK 128 (248)
T ss_pred HHHHHHHHHHHHH-h-cCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4444443333332 2 34789999999999999999999998853
No 109
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=93.82 E-value=0.087 Score=52.93 Aligned_cols=35 Identities=26% Similarity=0.333 Sum_probs=28.5
Q ss_pred HHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 46 AYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 46 Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
+.+..+....++.++|.||+|+|||..++.+.++.
T Consensus 76 ~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 76 ALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34444556678999999999999999999998764
No 110
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.71 E-value=0.066 Score=45.60 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=22.5
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
++.|++.|.+|||||+.++.+.+.+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 5679999999999999999998775
No 111
>PRK04040 adenylate kinase; Provisional
Probab=93.69 E-value=0.065 Score=46.50 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=22.7
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
..|+++|.+|+|||+.++.+.+.|.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 4699999999999999999998883
No 112
>PRK06893 DNA replication initiation factor; Validated
Probab=93.65 E-value=0.15 Score=45.30 Aligned_cols=32 Identities=16% Similarity=-0.046 Sum_probs=26.7
Q ss_pred hcCCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 52 NLDVNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 52 ~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
....+.++++.|.+|+|||..+..+.+.++..
T Consensus 35 ~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~ 66 (229)
T PRK06893 35 IDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLN 66 (229)
T ss_pred hccCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 34556789999999999999999999887653
No 113
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.62 E-value=0.061 Score=45.45 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.8
Q ss_pred EEEeCCCCCChhHHHHHHHHHHH
Q psy17386 59 CVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 59 IiisGeSGsGKTe~~k~il~yL~ 81 (276)
|++.|.+|||||+.++.+.+.+-
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999988764
No 114
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.58 E-value=0.12 Score=48.05 Aligned_cols=29 Identities=21% Similarity=0.363 Sum_probs=23.8
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
+.+.-|-|.|.+|||||+.++.+...|..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~ 88 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSR 88 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 35567779999999999999888777654
No 115
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.57 E-value=0.066 Score=46.18 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=23.4
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 57 QSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
-.|.|.|.||||||+.++.++..|..
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHhh
Confidence 46889999999999999999999875
No 116
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.56 E-value=0.065 Score=46.25 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=20.9
Q ss_pred eEEEeCCCCCChhHHHHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL 80 (276)
-|+|.|.||||||+-++.+.+.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999883
No 117
>PRK14531 adenylate kinase; Provisional
Probab=93.52 E-value=0.075 Score=45.47 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=21.9
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL 80 (276)
|.|++.|.+|||||+.++.+.+.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998875
No 118
>KOG0922|consensus
Probab=93.51 E-value=0.098 Score=53.33 Aligned_cols=115 Identities=24% Similarity=0.365 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHhhccCCcchH---H-HHHH---HhHHHHHHhcCC---
Q psy17386 39 VFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCSVTSNVSTWV---E-QQIL---EANTILEAFGNA--- 108 (276)
Q Consensus 39 ifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~~~~~~~~~---~-~~i~---~a~~ILeaFGnA--- 108 (276)
||+..++- |..-.++|.+|+-||+|||||+ .|-|||...+-.....+ + .||. -|..+-|-.|+-
T Consensus 52 I~~~r~~i---l~~ve~nqvlIviGeTGsGKST---QipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~ 125 (674)
T KOG0922|consen 52 IYKYRDQI---LYAVEDNQVLIVIGETGSGKST---QIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGE 125 (674)
T ss_pred HHHHHHHH---HHHHHHCCEEEEEcCCCCCccc---cHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCc
Confidence 56555544 3334568999999999999999 78999976543221111 1 1222 244566666653
Q ss_pred ---ccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccc-cCCCCCchHHH
Q psy17386 109 ---KTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITF-QSPGERNYHVF 161 (276)
Q Consensus 109 ---kT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~-~~~~ErnfHIF 161 (276)
-|++=++++ ++-.++-|=.+|.+.--.+..=+|+|--|+- -...||+-|.-
T Consensus 126 ~VGY~IRFed~t--s~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TD 180 (674)
T KOG0922|consen 126 EVGYTIRFEDST--SKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTD 180 (674)
T ss_pred eeeeEEEecccC--CCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHH
Confidence 222222221 2345566666665544444444577766655 45579988864
No 119
>PRK14527 adenylate kinase; Provisional
Probab=93.51 E-value=0.076 Score=45.65 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=23.8
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.+.+.|++.|.+|||||+.++.+.+.+.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567899999999999999998876653
No 120
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.49 E-value=0.068 Score=43.13 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=20.3
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q psy17386 59 CVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 59 IiisGeSGsGKTe~~k~il~yL 80 (276)
|++.|++|+|||+.++.+.+-+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7999999999999999888887
No 121
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=93.46 E-value=0.065 Score=51.59 Aligned_cols=28 Identities=29% Similarity=0.340 Sum_probs=24.6
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
.--|+++|.+|||||++.+.+++++...
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~~ 176 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGET 176 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4469999999999999999999998753
No 122
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=93.44 E-value=0.08 Score=45.38 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=22.8
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
...+++.|.||||||+.++.+...+.
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45789999999999999999888764
No 123
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.41 E-value=0.092 Score=52.34 Aligned_cols=55 Identities=20% Similarity=0.230 Sum_probs=38.4
Q ss_pred HHHhhcCcCCCCC--CchhHHHHHHHHHhH-hcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 24 VCEYHGAKMGSQE--PHVFALAEAAYSSLQ-NLDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 24 ~~~y~~~~~~~~p--PHifavA~~Ay~~m~-~~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
..+|+-+...++- +|+-. .++.+. .++-+|+++++|..|.|||+.++.+-+.|-+
T Consensus 4 a~KyRP~~f~dliGQe~vv~----~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC 61 (491)
T PRK14964 4 ALKYRPSSFKDLVGQDVLVR----ILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNC 61 (491)
T ss_pred hHHhCCCCHHHhcCcHHHHH----HHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcC
Confidence 4566666555543 44432 344443 4556899999999999999999999988744
No 124
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=93.37 E-value=0.12 Score=51.67 Aligned_cols=57 Identities=16% Similarity=0.273 Sum_probs=38.1
Q ss_pred HHHhhcCcCCCCCCchhHHHHHHHHH-hHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 24 VCEYHGAKMGSQEPHVFALAEAAYSS-LQNLDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 24 ~~~y~~~~~~~~pPHifavA~~Ay~~-m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.++|+-+...++.-|--.+ +.++. +...+-.++++++|+.|.|||++++.+.+.|-+
T Consensus 12 a~kyRP~~f~dliGq~~vv--~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 12 ARKYRPSNFAELQGQEVLV--KVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred hhhhCCCCHHHhcCcHHHH--HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3456655544443222222 23333 344556899999999999999999999999865
No 125
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.34 E-value=0.12 Score=51.35 Aligned_cols=55 Identities=15% Similarity=0.243 Sum_probs=38.2
Q ss_pred HHHhhcCcCCCC--CCchhHHHHHHHHHhHhcC-CCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 24 VCEYHGAKMGSQ--EPHVFALAEAAYSSLQNLD-VNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 24 ~~~y~~~~~~~~--pPHifavA~~Ay~~m~~~~-~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.++|+-+...++ ..|+.. ..+.+...+ -.++++++|+.|+|||+.++.+.+.|-+
T Consensus 9 ~~KyRP~~f~dvVGQe~iv~----~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 9 SRKYRPQFFRDVIHQDLAIG----ALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred HHHhCCCCHHHHhChHHHHH----HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 345665554443 345443 344444444 4678999999999999999999999865
No 126
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=93.34 E-value=0.058 Score=49.65 Aligned_cols=29 Identities=34% Similarity=0.468 Sum_probs=23.8
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcc
Q psy17386 57 QSCVISGESGAGKTETTKFILQYLCSVTS 85 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL~~~~~ 85 (276)
--+++.|.||||||++.|+|-+-+.-.++
T Consensus 28 ef~vliGpSGsGKTTtLkMINrLiept~G 56 (309)
T COG1125 28 EFLVLIGPSGSGKTTTLKMINRLIEPTSG 56 (309)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCCCc
Confidence 45788999999999999999887665443
No 127
>PRK03839 putative kinase; Provisional
Probab=93.33 E-value=0.076 Score=44.99 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=20.8
Q ss_pred eEEEeCCCCCChhHHHHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL 80 (276)
-|++.|-+|||||+.++.+-+-+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999988875
No 128
>PRK08727 hypothetical protein; Validated
Probab=93.27 E-value=0.17 Score=45.16 Aligned_cols=31 Identities=19% Similarity=0.146 Sum_probs=26.0
Q ss_pred cCCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 53 LDVNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 53 ~~~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
....+.|++.|.+|+|||..+..+...++..
T Consensus 38 ~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~ 68 (233)
T PRK08727 38 GQSSDWLYLSGPAGTGKTHLALALCAAAEQA 68 (233)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4455789999999999999999988887654
No 129
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.27 E-value=0.095 Score=43.37 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=24.0
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHhhc
Q psy17386 58 SCVISGESGAGKTETTKFILQYLCSVT 84 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL~~~~ 84 (276)
.|.+.|.+|||||+.++.++++|...+
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g 28 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRG 28 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcC
Confidence 478999999999999999999998543
No 130
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=93.25 E-value=0.11 Score=52.17 Aligned_cols=59 Identities=20% Similarity=0.227 Sum_probs=41.9
Q ss_pred HHHHhhcCcCCCCCCchhHHH--HHHHHHhHhcC-CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 23 KVCEYHGAKMGSQEPHVFALA--EAAYSSLQNLD-VNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 23 ~~~~y~~~~~~~~pPHifavA--~~Ay~~m~~~~-~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.+++|+-+...++.-|-=.+. +.+.+.+.... ..+-++++|.+|+|||++.+.+.+-|.
T Consensus 9 W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 9 WVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG 70 (519)
T ss_pred cchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 456777777777777765443 34455554444 356778899999999999999888864
No 131
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=93.23 E-value=0.095 Score=45.05 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=27.3
Q ss_pred HHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 47 YSSLQNLDVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 47 y~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
....+.....+.|++.|..|+|||..++.+++.+
T Consensus 11 l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 11 LKELLESGPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp HHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred HHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 3445556678999999999999999999999887
No 132
>PHA00729 NTP-binding motif containing protein
Probab=93.20 E-value=0.17 Score=45.51 Aligned_cols=39 Identities=31% Similarity=0.278 Sum_probs=28.6
Q ss_pred HHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 42 LAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 42 vA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
+|....+.+... .-..|+|+|.+|+|||+.+..+.+.+.
T Consensus 4 ~~k~~~~~l~~~-~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 4 LAKKIVSAYNNN-GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHHHHHhcC-CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344444444333 346899999999999999999988765
No 133
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.17 E-value=0.16 Score=48.97 Aligned_cols=56 Identities=16% Similarity=0.265 Sum_probs=40.1
Q ss_pred HHhhcCcCCCCCCchhHHHHHHHHHhHhc-CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 25 CEYHGAKMGSQEPHVFALAEAAYSSLQNL-DVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 25 ~~y~~~~~~~~pPHifavA~~Ay~~m~~~-~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
++|+-....++--|-.. ...++.++.. +-+++++++|+.|.|||+.++.+-+.|-+
T Consensus 8 ~k~RP~~~~eiiGq~~~--~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 8 RKYRPKKFADITAQEHI--TRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred HhcCCCcHhhccChHHH--HHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 45665555555444332 2346666665 56788999999999999999999998855
No 134
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.15 E-value=0.12 Score=37.24 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=18.9
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL~ 81 (276)
..+|+|++|||||+..-.+.--|.
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHc
Confidence 589999999999998766554443
No 135
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=93.14 E-value=0.12 Score=44.16 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=21.9
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~y 79 (276)
..+..|+|.||+|+||+..++.|-++
T Consensus 20 ~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 20 SSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp TSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 45688999999999999999988774
No 136
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=93.12 E-value=0.078 Score=48.55 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=22.2
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL 80 (276)
+.||++|.+|||||+.++.+.+.+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 579999999999999999998887
No 137
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.11 E-value=0.1 Score=44.56 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=22.8
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
..-|||+|.||||||+.++.+++-+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc
Confidence 35699999999999999999998764
No 138
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=93.10 E-value=0.081 Score=45.44 Aligned_cols=24 Identities=33% Similarity=0.428 Sum_probs=21.6
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL~ 81 (276)
-|.|||.+|||||+-++.+-+++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 388999999999999999998864
No 139
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.07 E-value=0.1 Score=44.47 Aligned_cols=31 Identities=29% Similarity=0.449 Sum_probs=23.6
Q ss_pred HhHhcCCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386 49 SLQNLDVNQSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 49 ~m~~~~~~QsIiisGeSGsGKTe~~k~il~y 79 (276)
.+...-+++.+++.|.||+|||+....++..
T Consensus 28 ~l~~~l~~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 28 ELKELLKGKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp HHHHHHTTSEEEEECSTTSSHHHHHHHHHTS
T ss_pred HHHHHhcCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3444445589999999999999987766655
No 140
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=93.06 E-value=0.16 Score=44.36 Aligned_cols=34 Identities=18% Similarity=0.161 Sum_probs=28.4
Q ss_pred hcCCCceEEEeCCCCCChhHHHHHHHHHHHhhcc
Q psy17386 52 NLDVNQSCVISGESGAGKTETTKFILQYLCSVTS 85 (276)
Q Consensus 52 ~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~~~ 85 (276)
...+.-.|-++|-||||||+.+..+-+-|...+-
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~ 52 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGY 52 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCC
Confidence 3445678999999999999999999998887543
No 141
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=93.03 E-value=0.083 Score=42.32 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=22.1
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
..+.+.|.|++|||||+..+.+...+.
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CCCEEEEEccCCCccccceeeeccccc
Confidence 467899999999999998877666544
No 142
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.02 E-value=0.087 Score=47.27 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=22.2
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 59 CVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 59 IiisGeSGsGKTe~~k~il~yL~~ 82 (276)
|+++|-+|||||+.++.+-++|..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999999854
No 143
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=93.00 E-value=0.087 Score=47.10 Aligned_cols=23 Identities=39% Similarity=0.453 Sum_probs=20.5
Q ss_pred EEEeCCCCCChhHHHHHHHHHHH
Q psy17386 59 CVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 59 IiisGeSGsGKTe~~k~il~yL~ 81 (276)
|-|+|-||||||+.++.+.+.|-
T Consensus 11 IgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 11 IGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred EEEeCCCCCCHHHHHHHHHHHhC
Confidence 44699999999999999999887
No 144
>PRK07667 uridine kinase; Provisional
Probab=92.95 E-value=0.096 Score=45.33 Aligned_cols=26 Identities=23% Similarity=0.119 Sum_probs=22.3
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 57 QSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
--|-|+|.+|||||+.++.+.+.|..
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 36678999999999999999888754
No 145
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=92.90 E-value=0.12 Score=43.44 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=23.1
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 58 SCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
.|++.|++|+|||+.+..+...+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 47899999999999999999888765
No 146
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=92.86 E-value=0.1 Score=44.63 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=22.3
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999888776543
No 147
>PRK04195 replication factor C large subunit; Provisional
Probab=92.85 E-value=0.11 Score=51.47 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=24.0
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
.....++++|++|+|||+.++.+.+.+
T Consensus 37 ~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 37 KPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 336899999999999999999998876
No 148
>PRK14528 adenylate kinase; Provisional
Probab=92.85 E-value=0.11 Score=44.79 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=21.3
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL 80 (276)
+.|++.|.+|||||+.++.+.+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 459999999999999999987765
No 149
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=92.78 E-value=0.12 Score=51.37 Aligned_cols=35 Identities=26% Similarity=0.332 Sum_probs=26.0
Q ss_pred HHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 46 AYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 46 Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.++.+... ..--|+++|++|||||++.+.+++++.
T Consensus 233 ~l~~~~~~-~~GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 233 RFERLIRR-PHGIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred HHHHHHhc-CCCEEEEEcCCCCCHHHHHHHHHhccC
Confidence 34444432 234689999999999999998888864
No 150
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.77 E-value=0.097 Score=45.82 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=22.6
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..|.+.-.+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999988876543
No 151
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=92.76 E-value=0.33 Score=51.79 Aligned_cols=37 Identities=35% Similarity=0.294 Sum_probs=28.0
Q ss_pred HHHHhHhc-CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 46 AYSSLQNL-DVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 46 Ay~~m~~~-~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
+++..+.. ..+.++.|+|.+|+|||.+++.+++-|..
T Consensus 770 fL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 770 FLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred HHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 44444443 34456779999999999999999998864
No 152
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=92.72 E-value=0.11 Score=45.24 Aligned_cols=27 Identities=33% Similarity=0.444 Sum_probs=23.1
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.+.|++|||||+..+.+.-.+
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999988877654
No 153
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=92.66 E-value=0.11 Score=45.31 Aligned_cols=27 Identities=33% Similarity=0.439 Sum_probs=22.9
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.+.|+||||||+..|.+.-.+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999888877654
No 154
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.66 E-value=0.21 Score=49.50 Aligned_cols=54 Identities=17% Similarity=0.352 Sum_probs=38.0
Q ss_pred HHhhcCcCCCC--CCchhHHHHHHHHHhHhcC-CCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 25 CEYHGAKMGSQ--EPHVFALAEAAYSSLQNLD-VNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 25 ~~y~~~~~~~~--pPHifavA~~Ay~~m~~~~-~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
++|+.+...++ ++|+ .+.++.+...+ -+++++++|+.|+|||+.++.+.+.|-.
T Consensus 6 ~kyRP~~~~divGq~~i----~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 6 RKYRPKTFSEVVGQDHV----KKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred HHHCCCCHHHccCcHHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 45666655554 3454 34455555544 4578999999999999999999887653
No 155
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=92.63 E-value=0.12 Score=44.91 Aligned_cols=28 Identities=21% Similarity=0.457 Sum_probs=23.1
Q ss_pred cCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 53 LDVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 53 ~~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
..++..|++.|.+|||||+....++..+
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~ 39 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEF 39 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhc
Confidence 4678999999999999999999998887
No 156
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.63 E-value=0.095 Score=48.20 Aligned_cols=53 Identities=23% Similarity=0.310 Sum_probs=36.3
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHHhhccCC---cch-----HHHHHHHhHHHHHHhc
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLCSVTSNV---STW-----VEQQILEANTILEAFG 106 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~~~~~~---~~~-----~~~~i~~a~~ILeaFG 106 (276)
.+...+-+-||||+|||+..|.+++-+--.++.- ... .+++......+|+..|
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vg 97 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVG 97 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhC
Confidence 4667899999999999999999999876444421 111 2223334566777777
No 157
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.60 E-value=0.21 Score=50.43 Aligned_cols=55 Identities=16% Similarity=0.332 Sum_probs=38.8
Q ss_pred HHHhhcCcCCCCC--CchhHHHHHHHHHhHhc-CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 24 VCEYHGAKMGSQE--PHVFALAEAAYSSLQNL-DVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 24 ~~~y~~~~~~~~p--PHifavA~~Ay~~m~~~-~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.++|+-....++- +|+.. ....++.. +-.++++++|+.|+|||+.++.+.+.|-+
T Consensus 7 a~KyRP~~f~diiGq~~~v~----~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 7 ARKYRPQSFAEVAGQQHALN----SLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred HHHHCcCcHHHhcCcHHHHH----HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4567666555554 44433 24444444 55678999999999999999999999864
No 158
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=92.60 E-value=0.23 Score=40.51 Aligned_cols=28 Identities=29% Similarity=0.374 Sum_probs=24.1
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
+....|++.|+=|||||+-+|-+++.|.
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg 40 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALG 40 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4568899999999999999999999873
No 159
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=92.57 E-value=0.12 Score=44.96 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=23.0
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|+||||||+..+.+.-.+
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467889999999999999888887654
No 160
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=92.52 E-value=0.12 Score=44.83 Aligned_cols=27 Identities=22% Similarity=0.417 Sum_probs=23.0
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.+.|++|||||+..+.+.-.+
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 456889999999999999988887654
No 161
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.52 E-value=0.28 Score=46.46 Aligned_cols=58 Identities=12% Similarity=0.198 Sum_probs=43.1
Q ss_pred HHHHhhcCcCCCCCCchhHHHHHHHHHhHhc-CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 23 KVCEYHGAKMGSQEPHVFALAEAAYSSLQNL-DVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 23 ~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~-~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
..++|+.....++--|-.+ -+.++..... +-++.++++|+.|.|||+.++.+.+.+..
T Consensus 7 ~~~k~rP~~~~~iig~~~~--~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 7 SARKYRPQTFDDVVGQSHI--TNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred HHHHHCCCcHHhcCCcHHH--HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4567877777776655443 3455555544 45789999999999999999999998865
No 162
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.51 E-value=0.12 Score=44.95 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=22.8
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999888877654
No 163
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=92.48 E-value=0.12 Score=45.05 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=23.6
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
...+.+.+.|++|||||+..|.+.-.+.
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence 4678999999999999999888876643
No 164
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=92.48 E-value=0.13 Score=46.59 Aligned_cols=29 Identities=17% Similarity=0.350 Sum_probs=25.1
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
..-.+++.|++|+|||+.++.+-+.|...
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~ 69 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEM 69 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 44679999999999999999999987654
No 165
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=92.47 E-value=0.12 Score=45.41 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=23.3
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.+.+.+.+.|++|||||+..|.+.-.+.
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 38 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLDA 38 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 3568899999999999999888876543
No 166
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.42 E-value=0.12 Score=45.52 Aligned_cols=28 Identities=29% Similarity=0.245 Sum_probs=23.9
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
...+.+.|.|++|||||+..+.+...+.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5678999999999999999888876654
No 167
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=92.42 E-value=0.22 Score=50.97 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=27.8
Q ss_pred HHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 48 SSLQNLDVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 48 ~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
........++.++|.|++|+|||+.++.+.+...
T Consensus 167 ~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~ 200 (615)
T TIGR02903 167 LAKVASPFPQHIILYGPPGVGKTTAARLALEEAK 200 (615)
T ss_pred HHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhh
Confidence 3344556788999999999999999999987764
No 168
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=92.41 E-value=0.2 Score=42.60 Aligned_cols=29 Identities=24% Similarity=0.265 Sum_probs=25.1
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
...-.|+++|.+|||||+.++.+...|..
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 44568999999999999999999998853
No 169
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=92.40 E-value=0.12 Score=48.68 Aligned_cols=28 Identities=29% Similarity=0.246 Sum_probs=24.4
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.+.+.+.|.|+||||||+..+.|+..+.
T Consensus 31 ~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~ 58 (330)
T PRK15093 31 TEGEIRGLVGESGSGKSLIAKAICGVTK 58 (330)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHccCC
Confidence 4678999999999999999999887653
No 170
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=92.38 E-value=0.13 Score=45.24 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=24.1
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..+.|.-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 467899999999999999999988776
No 171
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=92.36 E-value=0.25 Score=45.45 Aligned_cols=30 Identities=23% Similarity=0.191 Sum_probs=27.7
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
..+-+|-+.|+.|||||+..+++.+.|-..
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 578899999999999999999999999876
No 172
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=92.36 E-value=0.19 Score=52.37 Aligned_cols=36 Identities=22% Similarity=0.251 Sum_probs=30.9
Q ss_pred HHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 45 AAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 45 ~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+...++..++++.|++|+|||+.++.+-+.+
T Consensus 41 ~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 41 RLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 456777777788899999999999999999988765
No 173
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=92.33 E-value=0.086 Score=52.38 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=25.6
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.+.+.+.|.|+||||||+..|.++..+.-
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p 387 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLDP 387 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 57799999999999999999999887653
No 174
>PRK06761 hypothetical protein; Provisional
Probab=92.33 E-value=0.11 Score=48.25 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=23.7
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 57 QSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.-|+++|.+|||||+.++.+.+.|..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 46999999999999999999999864
No 175
>PRK12608 transcription termination factor Rho; Provisional
Probab=92.33 E-value=0.17 Score=48.84 Aligned_cols=42 Identities=19% Similarity=0.157 Sum_probs=37.3
Q ss_pred HHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 41 ALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 41 avA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.++.++...|.--++-|.++|.|++|+|||+.++.+.+.+..
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 567788888888888999999999999999999999988765
No 176
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=92.31 E-value=0.1 Score=48.44 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.4
Q ss_pred CceEEEeCCCCCChhHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il 77 (276)
.+-|+++|.||||||+.++.+-
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l~ 27 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRALE 27 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHHH
Confidence 3579999999999999999873
No 177
>PRK14530 adenylate kinase; Provisional
Probab=92.28 E-value=0.13 Score=45.15 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=21.7
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.|+|.|.+|||||+.++.+.+.+-
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 599999999999999999988764
No 178
>PRK08356 hypothetical protein; Provisional
Probab=92.28 E-value=0.1 Score=45.02 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=19.4
Q ss_pred ceEEEeCCCCCChhHHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFILQ 78 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~ 78 (276)
--|+++|.+|||||+.++.+-+
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999855
No 179
>PRK00698 tmk thymidylate kinase; Validated
Probab=92.26 E-value=0.16 Score=43.52 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=23.8
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
+-.|+|.|.+|||||+.++.+-++|..
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~ 29 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQ 29 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 357999999999999999999998754
No 180
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=92.25 E-value=0.26 Score=41.50 Aligned_cols=34 Identities=24% Similarity=0.218 Sum_probs=25.7
Q ss_pred HHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHH
Q psy17386 44 EAAYSSLQNLDVNQSCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 44 ~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il 77 (276)
..++..|-...+.-.|++.|.+|||||+..+.+.
T Consensus 7 ~~~~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~ 40 (190)
T cd00879 7 YNVLSSLGLYNKEAKILFLGLDNAGKTTLLHMLK 40 (190)
T ss_pred HHHHHHhhcccCCCEEEEECCCCCCHHHHHHHHh
Confidence 4456666555667779999999999999876543
No 181
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=92.24 E-value=0.15 Score=42.77 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=22.3
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
+.|+++|-+|||||+.++.+-+.|.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5699999999999999999988763
No 182
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=92.24 E-value=0.13 Score=48.46 Aligned_cols=28 Identities=21% Similarity=0.410 Sum_probs=24.1
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
...|+|+|.+|||||+.++.++.++...
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~ 175 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQ 175 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 4679999999999999999999886543
No 183
>PRK13947 shikimate kinase; Provisional
Probab=92.24 E-value=0.14 Score=42.71 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=21.1
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.|++.|.+|||||+.++.+-+-|-
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 499999999999999999877653
No 184
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=92.24 E-value=0.18 Score=36.90 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=22.3
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 59 CVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 59 IiisGeSGsGKTe~~k~il~yL~~ 82 (276)
|+++|..|+|||+.+..+.+.|+.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 688999999999999999999986
No 185
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=92.23 E-value=0.13 Score=46.73 Aligned_cols=25 Identities=48% Similarity=0.632 Sum_probs=22.7
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 58 SCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.|++.|.||||||...+.++.++..
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~ 39 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRH 39 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcc
Confidence 5899999999999999999998765
No 186
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.21 E-value=0.14 Score=43.42 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=22.7
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..|.+.-.+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999888876543
No 187
>PRK08116 hypothetical protein; Validated
Probab=92.21 E-value=0.3 Score=44.72 Aligned_cols=29 Identities=28% Similarity=0.272 Sum_probs=25.7
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
.+..+++.|.+|+|||..+..|.+.|...
T Consensus 113 ~~~gl~l~G~~GtGKThLa~aia~~l~~~ 141 (268)
T PRK08116 113 ENVGLLLWGSVGTGKTYLAACIANELIEK 141 (268)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 34579999999999999999999998764
No 188
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=92.21 E-value=0.26 Score=50.34 Aligned_cols=59 Identities=15% Similarity=0.183 Sum_probs=40.9
Q ss_pred HHHHhhcCcCCCCCCchhHHHHHHHHHhH-hcCCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 23 KVCEYHGAKMGSQEPHVFALAEAAYSSLQ-NLDVNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 23 ~~~~y~~~~~~~~pPHifavA~~Ay~~m~-~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
..++|+.....++--|-..+ +.++.+. ..+-.++++++|..|+|||+.++.+.+.|.+.
T Consensus 6 ~~~KyRP~~F~dIIGQe~iv--~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~ 65 (605)
T PRK05896 6 FYRKYRPHNFKQIIGQELIK--KILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCL 65 (605)
T ss_pred HHHHhCCCCHHHhcCcHHHH--HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 35567766555554333222 3444444 44668999999999999999999999998653
No 189
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.19 E-value=0.13 Score=45.56 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=22.9
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..|.+.-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999888877654
No 190
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=92.18 E-value=0.14 Score=44.24 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=22.7
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 356889999999999999888887654
No 191
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=92.18 E-value=0.13 Score=48.45 Aligned_cols=28 Identities=21% Similarity=0.430 Sum_probs=24.5
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.+.+.+.|.|+||||||+..+.|+..+.
T Consensus 39 ~~Ge~~~IvG~sGsGKSTLl~~l~gl~~ 66 (327)
T PRK11308 39 ERGKTLAVVGESGCGKSTLARLLTMIET 66 (327)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHcCCC
Confidence 4678999999999999999999888754
No 192
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=92.16 E-value=0.12 Score=44.43 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=20.3
Q ss_pred CceEEEeCCCCCChhHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~y 79 (276)
...|+|.|+||+|||+.+-.+++-
T Consensus 18 G~GVLi~G~SG~GKS~lAl~Li~r 41 (171)
T PF07475_consen 18 GVGVLITGPSGIGKSELALELIKR 41 (171)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHC
Confidence 467999999999999988777653
No 193
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=92.15 E-value=0.16 Score=42.69 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=22.5
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 59 CVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 59 IiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
|.+.|.+|||||+.++.+++.|...
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc
Confidence 6789999999999999999998754
No 194
>PRK13764 ATPase; Provisional
Probab=92.14 E-value=0.14 Score=52.22 Aligned_cols=27 Identities=22% Similarity=0.517 Sum_probs=24.0
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
...|+++|.+|||||+.++.+++++..
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 355999999999999999999999864
No 195
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=92.13 E-value=0.14 Score=43.12 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=22.1
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 59 CVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 59 IiisGeSGsGKTe~~k~il~yL~~ 82 (276)
|+|.|..|||||+.++.+.++|..
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 889999999999999999999864
No 196
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=92.12 E-value=0.16 Score=43.74 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=22.9
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 57 QSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
=.|.++|.+|+|||+.++.+...|..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~ 31 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLRE 31 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 35899999999999999999888765
No 197
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.11 E-value=0.14 Score=46.61 Aligned_cols=30 Identities=23% Similarity=0.401 Sum_probs=24.8
Q ss_pred cCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 53 LDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 53 ~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
-.+..++=|.||||||||+.++.++-+.--
T Consensus 30 i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p 59 (252)
T COG1124 30 IERGETLGIVGESGSGKSTLARLLAGLEKP 59 (252)
T ss_pred ecCCCEEEEEcCCCCCHHHHHHHHhcccCC
Confidence 356788999999999999999888777543
No 198
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=92.11 E-value=0.41 Score=46.00 Aligned_cols=64 Identities=23% Similarity=0.331 Sum_probs=43.9
Q ss_pred HHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHhhccCC------cchHHHHHHHhHHHHHHhcCC
Q psy17386 45 AAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCSVTSNV------STWVEQQILEANTILEAFGNA 108 (276)
Q Consensus 45 ~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~~~~~------~~~~~~~i~~a~~ILeaFGnA 108 (276)
.++...+....+-.|++.|.+|+|||.++|.+++-+-..+... +......-.-...|+.+||+.
T Consensus 31 ~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~ 100 (366)
T COG1474 31 SFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKV 100 (366)
T ss_pred HHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCC
Confidence 3466677777777799999999999999999999998765432 111112222334567777733
No 199
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=92.11 E-value=0.11 Score=48.55 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=22.8
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
...|+++|.+|||||+.++.++.++.
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCC
Confidence 46899999999999999998887754
No 200
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.08 E-value=0.28 Score=49.11 Aligned_cols=55 Identities=16% Similarity=0.246 Sum_probs=40.5
Q ss_pred HHHhhcCcCCCCC--CchhHHHHHHHHHhH-hcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 24 VCEYHGAKMGSQE--PHVFALAEAAYSSLQ-NLDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 24 ~~~y~~~~~~~~p--PHifavA~~Ay~~m~-~~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.++|+-+...++- +|+- ++.+++. ..+-+++++++|..|.|||+.++.+.+.|-+
T Consensus 7 ~~kyRP~~f~divGq~~v~----~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 7 ARKWRPRCFQEVIGQAPVV----RALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred HHHHCCCCHHHhcCCHHHH----HHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5677766655553 4443 3455554 4567889999999999999999999999854
No 201
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=92.08 E-value=0.2 Score=41.37 Aligned_cols=30 Identities=27% Similarity=0.284 Sum_probs=22.5
Q ss_pred HHhHhcCCCceEEEeCCCCCChhHHHHHHH
Q psy17386 48 SSLQNLDVNQSCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 48 ~~m~~~~~~QsIiisGeSGsGKTe~~k~il 77 (276)
+.+....+.-.|++.|.+|+|||+..+.+.
T Consensus 6 ~~~~~~~~~~~v~i~G~~g~GKStLl~~l~ 35 (173)
T cd04155 6 RKLRKSSEEPRILILGLDNAGKTTILKQLA 35 (173)
T ss_pred HHhhccCCccEEEEEccCCCCHHHHHHHHh
Confidence 334444456679999999999999877664
No 202
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=92.08 E-value=0.22 Score=42.56 Aligned_cols=37 Identities=14% Similarity=0.154 Sum_probs=29.7
Q ss_pred HHHhHh-cCCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 47 YSSLQN-LDVNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 47 y~~m~~-~~~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
++.+.. .+-++++++.|++|.|||+.++.+.+.+...
T Consensus 4 l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~ 41 (188)
T TIGR00678 4 LKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCE 41 (188)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 344443 4467999999999999999999999998653
No 203
>PF13173 AAA_14: AAA domain
Probab=92.06 E-value=0.17 Score=40.54 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=23.8
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
++.+++.|..|+|||+.++.+++.+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 46799999999999999999998877
No 204
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=92.06 E-value=0.14 Score=44.72 Aligned_cols=27 Identities=33% Similarity=0.443 Sum_probs=22.3
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999888765443
No 205
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=92.05 E-value=0.14 Score=47.33 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=22.2
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 59 CVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 59 IiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
|.++|-||||||+.++.+.+.|...
T Consensus 2 IgItG~SGSGKTTv~~~l~~~l~~~ 26 (277)
T cd02029 2 IAVTGSSGAGTTTVKRAFEHIFARE 26 (277)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc
Confidence 7789999999999999999988643
No 206
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=92.05 E-value=0.15 Score=42.95 Aligned_cols=26 Identities=31% Similarity=0.285 Sum_probs=21.8
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 58 SCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
++++.|++|+|||..+..++...+..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~ 26 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR 26 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC
Confidence 47899999999999988887776643
No 207
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.02 E-value=0.15 Score=44.24 Aligned_cols=27 Identities=33% Similarity=0.512 Sum_probs=22.5
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999999988887643
No 208
>PRK02496 adk adenylate kinase; Provisional
Probab=92.01 E-value=0.15 Score=43.39 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.7
Q ss_pred eEEEeCCCCCChhHHHHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL 80 (276)
-|++.|.+|||||+.++.+.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999998765
No 209
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=92.01 E-value=0.13 Score=45.32 Aligned_cols=27 Identities=30% Similarity=0.398 Sum_probs=22.7
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.+.|++|||||+..|.+.-.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 456889999999999999988876544
No 210
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=92.00 E-value=0.13 Score=44.63 Aligned_cols=27 Identities=37% Similarity=0.447 Sum_probs=22.8
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.+.|++|||||+..+.+.-.+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 467889999999999999988876654
No 211
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=92.00 E-value=0.3 Score=42.46 Aligned_cols=38 Identities=24% Similarity=0.339 Sum_probs=30.3
Q ss_pred HHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 45 AAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 45 ~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
+|.+.++. ..++..++.|..|+|||+..+.+.+.+...
T Consensus 8 ~a~~~~l~-~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 8 EAVRAILT-SGDRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp HHHHHHHH-CTCSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHh-cCCeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 34555544 456889999999999999999999988764
No 212
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=92.00 E-value=0.15 Score=45.26 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=23.2
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 467899999999999999988887654
No 213
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=91.99 E-value=0.41 Score=42.46 Aligned_cols=43 Identities=23% Similarity=0.142 Sum_probs=30.9
Q ss_pred HHHHHHHhHhcCC--CceEEEeCCCCCChhHHHHHHHHHHHhhcc
Q psy17386 43 AEAAYSSLQNLDV--NQSCVISGESGAGKTETTKFILQYLCSVTS 85 (276)
Q Consensus 43 A~~Ay~~m~~~~~--~QsIiisGeSGsGKTe~~k~il~yL~~~~~ 85 (276)
|-.+.+.+..... -..++|.|.+|+|||...+.+...+....+
T Consensus 19 a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~ 63 (219)
T PF00308_consen 19 AYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHP 63 (219)
T ss_dssp HHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccc
Confidence 4445555554432 357999999999999999999888776433
No 214
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=91.99 E-value=0.15 Score=44.17 Aligned_cols=27 Identities=30% Similarity=0.354 Sum_probs=22.8
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.+.|++|||||+..|.+.-.+
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999888877654
No 215
>PRK06620 hypothetical protein; Validated
Probab=91.98 E-value=0.3 Score=43.26 Aligned_cols=22 Identities=36% Similarity=0.386 Sum_probs=18.9
Q ss_pred ceEEEeCCCCCChhHHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFILQ 78 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~ 78 (276)
.++++.|++|+|||..++.+.+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~ 66 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQN 66 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHh
Confidence 7899999999999998886433
No 216
>PRK13946 shikimate kinase; Provisional
Probab=91.97 E-value=0.16 Score=43.51 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=23.2
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
....|++.|-+|||||+..+.+-+.|
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999988876
No 217
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.96 E-value=0.15 Score=44.55 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=21.9
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~y 79 (276)
...+.+.|.|++|||||+..+.+.-.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45688999999999999998887654
No 218
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=91.96 E-value=0.15 Score=45.16 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=22.6
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 25 RPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 457889999999999999888876543
No 219
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=91.95 E-value=0.13 Score=48.50 Aligned_cols=28 Identities=32% Similarity=0.493 Sum_probs=24.5
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.+.+.+.|.|+||||||+..+.|+..+.
T Consensus 40 ~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~ 67 (330)
T PRK09473 40 RAGETLGIVGESGSGKSQTAFALMGLLA 67 (330)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 4678999999999999999999887764
No 220
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=91.92 E-value=0.16 Score=44.06 Aligned_cols=27 Identities=37% Similarity=0.474 Sum_probs=22.8
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
.+.+.+.|.|++|||||+..+.+.-.+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 467889999999999999988877654
No 221
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=91.92 E-value=0.18 Score=46.43 Aligned_cols=29 Identities=21% Similarity=0.224 Sum_probs=25.1
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
+...|++.|.+|+|||+++..+..+++..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 35689999999999999999999888754
No 222
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.91 E-value=0.15 Score=45.03 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=23.2
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|+||||||+..|.+.-.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 456889999999999999998887655
No 223
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=91.90 E-value=0.14 Score=43.88 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=21.0
Q ss_pred eEEEeCCCCCChhHHHHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL 80 (276)
-||++|.|||||++.++.+++..
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999998884
No 224
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=91.90 E-value=0.16 Score=46.94 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=24.0
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHhhc
Q psy17386 58 SCVISGESGAGKTETTKFILQYLCSVT 84 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL~~~~ 84 (276)
.|++.|++|+|||..++.+-+.+...+
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g 86 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLG 86 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 599999999999999999999887643
No 225
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=91.87 E-value=0.13 Score=51.72 Aligned_cols=29 Identities=17% Similarity=0.446 Sum_probs=25.7
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.+.|.+.|.|+||||||+..|.++..+.-
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~~p 395 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTRFYDI 395 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 46799999999999999999999988654
No 226
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.85 E-value=0.28 Score=49.33 Aligned_cols=55 Identities=16% Similarity=0.309 Sum_probs=38.2
Q ss_pred HHHhhcCcCCCCC--CchhHHHHHHHHHhHhc-CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 24 VCEYHGAKMGSQE--PHVFALAEAAYSSLQNL-DVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 24 ~~~y~~~~~~~~p--PHifavA~~Ay~~m~~~-~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.++|+-+...++- +|+-. +++.+... +-.++++++|++|.|||+.++.+.+.|-+
T Consensus 7 ~~k~rP~~f~divGq~~v~~----~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 7 ARKWRPKSFSELVGQEHVVR----ALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred HHHhCCCcHHHhcCcHHHHH----HHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4556655544443 44433 44444444 56788999999999999999999999854
No 227
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.85 E-value=0.15 Score=44.46 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=22.2
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
.+ +.+.|.|++|||||+..+.+.-.+
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence 46 899999999999999888876554
No 228
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=91.84 E-value=0.16 Score=44.27 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=22.6
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|.+|||||+..|.+...+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 457889999999999999988876543
No 229
>PRK15453 phosphoribulokinase; Provisional
Probab=91.84 E-value=0.15 Score=47.42 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=22.9
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
+.=-|.|+|-||||||+.++.+.+-|..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~ 31 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRR 31 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3346889999999999999988876653
No 230
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=91.83 E-value=0.16 Score=43.99 Aligned_cols=27 Identities=26% Similarity=0.466 Sum_probs=22.7
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 457889999999999999988876544
No 231
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=91.81 E-value=0.15 Score=48.16 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=24.7
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.+.+.+.|.|+||||||+..|.|+..+.
T Consensus 45 ~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~ 72 (331)
T PRK15079 45 YEGETLGVVGESGCGKSTFARAIIGLVK 72 (331)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCC
Confidence 5678999999999999999999987654
No 232
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=91.77 E-value=0.16 Score=43.88 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=20.6
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 58 SCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.+++.|.+|||||...+.++..|+.
T Consensus 40 h~li~G~tgsGKS~~l~~ll~~l~~ 64 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRTLLLSLAL 64 (205)
T ss_dssp SEEEE--TTSSHHHHHHHHHHHHHT
T ss_pred eEEEEcCCCCCccHHHHHHHHHHHH
Confidence 6999999999999999988888775
No 233
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=91.76 E-value=0.29 Score=46.69 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=32.2
Q ss_pred HHHHHHHhHh-cCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 43 AEAAYSSLQN-LDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 43 A~~Ay~~m~~-~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
|.+.+..+.. .+-+++++|+|+.|.|||+.++.+.+.|.+
T Consensus 31 a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 31 AEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred HHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 3445555554 445889999999999999999999999876
No 234
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=91.75 E-value=0.16 Score=44.64 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=22.4
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.+.|++|||||+..|.+.-.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 24 KQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 466889999999999999888776543
No 235
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=91.75 E-value=0.4 Score=44.77 Aligned_cols=57 Identities=16% Similarity=0.231 Sum_probs=36.3
Q ss_pred HHHhhcCcCCCCCCchhHHHHHHHHHhH-hcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 24 VCEYHGAKMGSQEPHVFALAEAAYSSLQ-NLDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 24 ~~~y~~~~~~~~pPHifavA~~Ay~~m~-~~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.++|+.....++.-|--.+ +.++... ..+-.+++++.|++|.|||+.++.+.+.|..
T Consensus 5 ~~~~rp~~~~~iig~~~~~--~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~ 62 (355)
T TIGR02397 5 ARKYRPQTFEDVIGQEHIV--QTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNC 62 (355)
T ss_pred HHHhCCCcHhhccCcHHHH--HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3455544444443222222 2333333 3445788999999999999999999998753
No 236
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=91.73 E-value=0.16 Score=45.03 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=22.8
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..|.+.-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 466899999999999999988876553
No 237
>PRK10908 cell division protein FtsE; Provisional
Probab=91.70 E-value=0.17 Score=44.35 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=22.9
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999988877554
No 238
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=91.69 E-value=0.21 Score=42.30 Aligned_cols=27 Identities=26% Similarity=0.295 Sum_probs=23.6
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 57 QSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
+.|.++|.||||||+.++.+++.|...
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~ 28 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSAR 28 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 358899999999999999999988754
No 239
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=91.65 E-value=0.16 Score=43.08 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=20.0
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q psy17386 59 CVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 59 IiisGeSGsGKTe~~k~il~yL 80 (276)
|++.|.+|||||+.++.+-+.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 8999999999999999887764
No 240
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=91.65 E-value=0.44 Score=40.16 Aligned_cols=29 Identities=31% Similarity=0.388 Sum_probs=26.0
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
...-.|+++|+=|||||+-+|-+++.|..
T Consensus 23 ~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 23 KAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 45668999999999999999999999984
No 241
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.63 E-value=0.24 Score=46.52 Aligned_cols=38 Identities=29% Similarity=0.408 Sum_probs=28.1
Q ss_pred HHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 43 AEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 43 A~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.+.||-++.... ..+|+++|+.|||||+..+.++.++-
T Consensus 131 ~~~ayL~~~ie~-~~siii~G~t~sGKTt~lnall~~Ip 168 (312)
T COG0630 131 EQAAYLWLAIEA-RKSIIICGGTASGKTTLLNALLDFIP 168 (312)
T ss_pred HHHHHHHHHHHc-CCcEEEECCCCCCHHHHHHHHHHhCC
Confidence 345554443332 36799999999999999999988865
No 242
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=91.63 E-value=0.16 Score=47.82 Aligned_cols=28 Identities=29% Similarity=0.398 Sum_probs=24.5
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.+.+.+-|.|+||||||+.++.++..+.
T Consensus 31 ~~Ge~~~lvG~sGsGKSTL~~~l~Gll~ 58 (326)
T PRK11022 31 KQGEVVGIVGESGSGKSVSSLAIMGLID 58 (326)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 4668899999999999999999988764
No 243
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=91.62 E-value=0.18 Score=42.42 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=23.0
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.+.|++|||||+..+.+.-.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467889999999999999888877654
No 244
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=91.60 E-value=0.17 Score=44.76 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=23.1
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
...+.+.|.|++|||||+..|.+.-.+.
T Consensus 9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 36 (230)
T TIGR01184 9 QQGEFISLIGHSGCGKSTLLNLISGLAQ 36 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3567899999999999999888776643
No 245
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=91.59 E-value=0.17 Score=45.09 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=23.2
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 25 PKNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 467889999999999999988877554
No 246
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.58 E-value=0.18 Score=43.88 Aligned_cols=27 Identities=30% Similarity=0.544 Sum_probs=23.0
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..+.+...+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999988877654
No 247
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=91.58 E-value=0.19 Score=43.91 Aligned_cols=28 Identities=25% Similarity=0.265 Sum_probs=23.7
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
++.|++.|.+|+|||+++-++-.++...
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~ 28 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK 28 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc
Confidence 4679999999999999988877777654
No 248
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=91.57 E-value=0.18 Score=43.75 Aligned_cols=27 Identities=33% Similarity=0.400 Sum_probs=22.6
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.+.|++|||||+..|.+.-.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999888877654
No 249
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=91.56 E-value=0.17 Score=44.76 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=22.4
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~y 79 (276)
...+.+.|.|++|||||+..|.+.-.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45688999999999999998887765
No 250
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=91.55 E-value=0.23 Score=49.43 Aligned_cols=37 Identities=19% Similarity=0.182 Sum_probs=26.7
Q ss_pred chhHHHHHHHHHhHhc-----CCCceEEEeCCCCCChhHHHH
Q psy17386 38 HVFALAEAAYSSLQNL-----DVNQSCVISGESGAGKTETTK 74 (276)
Q Consensus 38 HifavA~~Ay~~m~~~-----~~~QsIiisGeSGsGKTe~~k 74 (276)
||=.-.+..+...+.. ...+.|.++|+||||||+..+
T Consensus 9 hi~r~Ie~~l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 9 YVKRKIQTDLERILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred eechHHHHHHHHHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 3333344555555543 577999999999999999988
No 251
>PRK14974 cell division protein FtsY; Provisional
Probab=91.54 E-value=0.39 Score=45.67 Aligned_cols=29 Identities=31% Similarity=0.314 Sum_probs=25.6
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
++..|++.|.+|+|||+++..+..+|...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999888654
No 252
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=91.54 E-value=0.18 Score=44.00 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=23.0
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.+.|++|||||+..+.+.-.+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 467899999999999999988876554
No 253
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.52 E-value=0.18 Score=42.52 Aligned_cols=26 Identities=35% Similarity=0.459 Sum_probs=21.6
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~y 79 (276)
...+.+.|.|++|||||+..|.+.-.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45688999999999999987776544
No 254
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=91.51 E-value=0.34 Score=41.62 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=24.6
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
...+.+++.|.+|+|||..+..+.+.++.
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~ 73 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIR 73 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhcc
Confidence 35688999999999999999999998887
No 255
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=91.50 E-value=0.18 Score=44.43 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=23.7
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.+.+.+.|.|++|||||+..+.+.-.+.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLMGLLP 51 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678999999999999999888776653
No 256
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=91.49 E-value=0.18 Score=43.97 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=22.7
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999888876554
No 257
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=91.44 E-value=0.3 Score=44.74 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=24.1
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
...+.+++.|++|+|||..++.+.+.+.
T Consensus 28 ~~~~~~ll~Gp~G~GKT~la~~ia~~~~ 55 (305)
T TIGR00635 28 EALDHLLLYGPPGLGKTTLAHIIANEMG 55 (305)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4567899999999999999998887764
No 258
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=91.41 E-value=0.18 Score=44.54 Aligned_cols=28 Identities=36% Similarity=0.407 Sum_probs=23.4
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
...+.+.|.|.+|||||+..|.+.-.+.
T Consensus 10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 10 KRGEVLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4578999999999999998888876543
No 259
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=91.41 E-value=0.18 Score=44.66 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=19.7
Q ss_pred CCCceEEEeCCCCCChhHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il 77 (276)
...+.+.+.|+||||||+.++.++
T Consensus 19 ~~Ge~~~l~G~sGsGKSTL~~~~i 42 (226)
T cd03270 19 PRNKLVVITGVSGSGKSSLAFDTI 42 (226)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHH
Confidence 467899999999999999974333
No 260
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.40 E-value=0.19 Score=43.19 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=22.8
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.+.|++|||||+..+.+.--+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 467889999999999999888876654
No 261
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=91.39 E-value=0.2 Score=43.13 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=20.3
Q ss_pred CCCceEEEeCCCCCChhHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il 77 (276)
.....+.+.|+||||||+..+.++
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 355778999999999999998764
No 262
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=91.38 E-value=0.29 Score=44.50 Aligned_cols=41 Identities=20% Similarity=0.245 Sum_probs=29.1
Q ss_pred CchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 37 PHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 37 PHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
|.+=.+-+++.+.+.. ++.|++.|++|+|||+.++.+-+.+
T Consensus 5 ~~~~~l~~~~l~~l~~---g~~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 5 DAVKRVTSRALRYLKS---GYPVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred HHHHHHHHHHHHHHhc---CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3444455555544443 4679999999999999999887644
No 263
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=91.36 E-value=0.19 Score=44.12 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=23.1
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 467899999999999999888887654
No 264
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=91.35 E-value=0.18 Score=45.03 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=23.1
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..|.+.-.+
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 30 EQNQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 467889999999999999988887643
No 265
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=91.35 E-value=0.15 Score=45.83 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=17.3
Q ss_pred CCCceEEEeCCCCCChhHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKF 75 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~ 75 (276)
.+.-.+.|.|+||||||+....
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLni 50 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNL 50 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHH
Confidence 3456789999999999996443
No 266
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=91.35 E-value=0.19 Score=45.23 Aligned_cols=20 Identities=20% Similarity=0.311 Sum_probs=17.1
Q ss_pred cHHHHHhhhhhhHHHHHHHH
Q psy17386 229 SFEQLCINYTNEKLHKFFNH 248 (276)
Q Consensus 229 sfeQl~iNy~NEkLq~~f~~ 248 (276)
+-+++.-|-.+||+++|..+
T Consensus 219 ~p~~~f~~p~~~R~~~FL~~ 238 (240)
T COG1126 219 PPEEFFDNPKSERTRQFLSK 238 (240)
T ss_pred CHHHHhcCCCCHHHHHHHHh
Confidence 67888889999999998765
No 267
>PRK13695 putative NTPase; Provisional
Probab=91.34 E-value=0.2 Score=42.29 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=21.3
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 59 CVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 59 IiisGeSGsGKTe~~k~il~yL~~ 82 (276)
|.++|++|+|||+.++.+...+..
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l~~ 26 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELLKE 26 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999998887654
No 268
>PRK00625 shikimate kinase; Provisional
Probab=91.32 E-value=0.19 Score=43.06 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.2
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL~ 81 (276)
-|++.|..|||||+.++.+-+.|-
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999987753
No 269
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.32 E-value=0.2 Score=43.53 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=23.0
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.+.|++|||||+..|.+...+
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 22 AQGEITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999888877554
No 270
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=91.32 E-value=0.19 Score=44.23 Aligned_cols=28 Identities=32% Similarity=0.326 Sum_probs=24.1
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
...+.+.+.|++|||||+..|.+.-.+.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 31 ESGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCccC
Confidence 5678999999999999999988877653
No 271
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=91.31 E-value=0.36 Score=44.97 Aligned_cols=36 Identities=17% Similarity=0.041 Sum_probs=30.7
Q ss_pred HHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 47 YSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 47 y~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
-|..+..+.-..|-++|.+|||||+..+.+++.|..
T Consensus 95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~ 130 (290)
T PRK10463 95 NRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKD 130 (290)
T ss_pred HHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 455666777899999999999999999999998754
No 272
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.30 E-value=0.19 Score=44.36 Aligned_cols=27 Identities=30% Similarity=0.457 Sum_probs=22.8
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.+.|++|||||+..+.+.-.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999988887654
No 273
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=91.28 E-value=0.19 Score=45.32 Aligned_cols=27 Identities=30% Similarity=0.508 Sum_probs=22.9
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 25 ESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999988887654
No 274
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.27 E-value=0.18 Score=47.34 Aligned_cols=29 Identities=21% Similarity=0.476 Sum_probs=25.1
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
...=-|+++|.+|||||++.-.++.|+-.
T Consensus 123 ~~~GLILVTGpTGSGKSTTlAamId~iN~ 151 (353)
T COG2805 123 SPRGLILVTGPTGSGKSTTLAAMIDYINK 151 (353)
T ss_pred CCCceEEEeCCCCCcHHHHHHHHHHHHhc
Confidence 44567999999999999999999999754
No 275
>PRK10436 hypothetical protein; Provisional
Probab=91.26 E-value=0.17 Score=50.15 Aligned_cols=36 Identities=25% Similarity=0.321 Sum_probs=26.4
Q ss_pred HHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 46 AYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 46 Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.++.+.. ...=-|+++|.+|||||++...+++++..
T Consensus 209 ~l~~~~~-~~~GliLvtGpTGSGKTTtL~a~l~~~~~ 244 (462)
T PRK10436 209 QFRQALQ-QPQGLILVTGPTGSGKTVTLYSALQTLNT 244 (462)
T ss_pred HHHHHHH-hcCCeEEEECCCCCChHHHHHHHHHhhCC
Confidence 3444442 23346889999999999999988888643
No 276
>PRK13949 shikimate kinase; Provisional
Probab=91.25 E-value=0.2 Score=42.55 Aligned_cols=24 Identities=33% Similarity=0.351 Sum_probs=21.4
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.|++.|.+|||||+.++.+-+.|-
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 599999999999999998887754
No 277
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=91.25 E-value=0.24 Score=39.64 Aligned_cols=25 Identities=32% Similarity=0.628 Sum_probs=23.2
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 59 CVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 59 IiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
|+++|.+|+|||..+..+.++|+..
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~ 26 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEK 26 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 8899999999999999999999763
No 278
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=91.24 E-value=0.2 Score=45.19 Aligned_cols=26 Identities=31% Similarity=0.356 Sum_probs=22.1
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
..+.+.|.|++|||||+..|.+.-.+
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999988876654
No 279
>PRK00279 adk adenylate kinase; Reviewed
Probab=91.23 E-value=0.21 Score=43.75 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=21.3
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.|++.|.+|||||+.++.+-+.+-
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 499999999999999999887754
No 280
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=91.23 E-value=0.2 Score=44.30 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=22.8
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 456889999999999999888887654
No 281
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.20 E-value=0.2 Score=44.73 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=22.9
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 27 PDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 466889999999999999988877654
No 282
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.19 E-value=0.36 Score=49.05 Aligned_cols=57 Identities=12% Similarity=0.221 Sum_probs=37.8
Q ss_pred HHhhcCcCCCCCCchhHHHHHHHHHhHh-cCCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 25 CEYHGAKMGSQEPHVFALAEAAYSSLQN-LDVNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 25 ~~y~~~~~~~~pPHifavA~~Ay~~m~~-~~~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
++|+-....++-=|--.+ ..++..+. .+-.+++|++|++|.|||+.++.+.+.|.+.
T Consensus 8 ~kyRP~~~~eiiGq~~~~--~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~ 65 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVV--QTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCT 65 (585)
T ss_pred HHhCCCCHHHhcCCHHHH--HHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 456655555543222222 22343333 4567899999999999999999999998643
No 283
>PRK14532 adenylate kinase; Provisional
Probab=91.18 E-value=0.18 Score=42.89 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.1
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.|++.|.+|||||+.++.+-+.+-
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g 25 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERG 25 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999987753
No 284
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=91.16 E-value=0.35 Score=45.11 Aligned_cols=47 Identities=21% Similarity=0.320 Sum_probs=32.0
Q ss_pred CCCCchhHHHHHHHHHh----HhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 34 SQEPHVFALAEAAYSSL----QNLDVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 34 ~~pPHifavA~~Ay~~m----~~~~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
++||---..+....+.| ..-.....|+++|.+|||||+..+.+-+.|
T Consensus 107 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 107 QASPAQLARVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred cCCHHHHHHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 45554333333333333 334567899999999999999999987765
No 285
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=91.13 E-value=0.19 Score=50.96 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=25.4
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
++.-.|+++|.+|||||+.++.+-+.|-.
T Consensus 390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 390 KQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 35568999999999999999999998865
No 286
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=91.12 E-value=0.19 Score=46.27 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.5
Q ss_pred EEEeCCCCCChhHHHHHHHHHHH
Q psy17386 59 CVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 59 IiisGeSGsGKTe~~k~il~yL~ 81 (276)
|.|.|.||||||+.++.+...|-
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll~ 24 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLFG 24 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhhC
Confidence 67899999999999999988764
No 287
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=91.12 E-value=0.28 Score=42.07 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=19.4
Q ss_pred eEEEeCCCCCChhHHHHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL 80 (276)
..+|.|.+|+|||.+...++..+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 58899999999999988888888
No 288
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.11 E-value=0.19 Score=46.13 Aligned_cols=28 Identities=18% Similarity=0.361 Sum_probs=23.8
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
...+.+.+.|++|||||+..|.+.-.+.
T Consensus 35 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 62 (289)
T PRK13645 35 KKNKVTCVIGTTGSGKSTMIQLTNGLII 62 (289)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4568899999999999999988877653
No 289
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=91.09 E-value=0.18 Score=52.50 Aligned_cols=32 Identities=25% Similarity=0.374 Sum_probs=26.9
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHHhhcc
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLCSVTS 85 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~~~~ 85 (276)
...|.|-|.|+||||||+.+|.+.....-..+
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G 528 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQG 528 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 45789999999999999999999988764433
No 290
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.06 E-value=0.21 Score=45.44 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=23.1
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 48 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 48 REGEIFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999988876654
No 291
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=91.04 E-value=0.25 Score=46.48 Aligned_cols=29 Identities=21% Similarity=0.187 Sum_probs=26.0
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
+.+.|.+.|.+|+|||+++..+..++...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 56899999999999999999999998754
No 292
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=91.01 E-value=0.21 Score=43.69 Aligned_cols=27 Identities=33% Similarity=0.512 Sum_probs=22.7
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999888877654
No 293
>PRK09087 hypothetical protein; Validated
Probab=91.00 E-value=0.37 Score=43.01 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=20.3
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~y 79 (276)
.+..++|.|++|+|||..++.+.+.
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHh
Confidence 4567999999999999988865543
No 294
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.00 E-value=0.22 Score=42.95 Aligned_cols=27 Identities=33% Similarity=0.413 Sum_probs=23.1
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467889999999999999998877654
No 295
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=91.00 E-value=0.21 Score=44.23 Aligned_cols=27 Identities=33% Similarity=0.447 Sum_probs=23.4
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.+.|.+|||||+..+.+.-.+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 25 DQGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999988888764
No 296
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=90.99 E-value=0.18 Score=47.03 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=19.7
Q ss_pred ceEEEeCCCCCChhHHHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~y 79 (276)
.-|+|+|+||+||||++--+++-
T Consensus 146 vGVLItG~SG~GKSElALeLi~r 168 (308)
T COG1493 146 VGVLITGPSGAGKSELALELIKR 168 (308)
T ss_pred eEEEEECCCCCCHhHHHHHHHHh
Confidence 67999999999999988766655
No 297
>PLN02165 adenylate isopentenyltransferase
Probab=90.98 E-value=0.2 Score=47.55 Aligned_cols=32 Identities=19% Similarity=0.274 Sum_probs=26.5
Q ss_pred hHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 50 LQNLDVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 50 m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
|........|+|.|.+|||||..+..+-+.+-
T Consensus 37 ~~~~~~g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 37 MEQNCKDKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred cccCCCCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 55666677899999999999999988777753
No 298
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.98 E-value=0.21 Score=45.17 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=23.3
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|.+|||||+..+.+.-.+
T Consensus 45 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 71 (268)
T PRK14248 45 EKHAVTALIGPSGCGKSTFLRSINRMN 71 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 467899999999999999999887643
No 299
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=90.97 E-value=0.22 Score=43.12 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=23.1
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
...+.+.+.|++|||||+..+.+...+.
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (204)
T PRK13538 25 NAGELVQIEGPNGAGKTSLLRILAGLAR 52 (204)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3567899999999999999888776644
No 300
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=90.96 E-value=0.43 Score=46.56 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=22.2
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...|++.|++|+|||+.++.+-+.+
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHh
Confidence 4789999999999999999987765
No 301
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=90.94 E-value=0.21 Score=44.34 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=22.3
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~y 79 (276)
...+.+.|.|++|||||+..+.|.-.
T Consensus 45 ~~Ge~~~i~G~NGsGKSTLl~~i~Gl 70 (236)
T cd03267 45 EKGEIVGFIGPNGAGKTTTLKILSGL 70 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999998887654
No 302
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=90.94 E-value=0.36 Score=46.12 Aligned_cols=30 Identities=23% Similarity=0.422 Sum_probs=25.9
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
..-..|++.|++|+|||+.++.+.+++...
T Consensus 36 p~~~~vli~G~~GtGKs~~ar~~~~~l~~~ 65 (350)
T CHL00081 36 PKIGGVMIMGDRGTGKSTTIRALVDLLPEI 65 (350)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 344689999999999999999999998753
No 303
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=90.93 E-value=0.23 Score=42.16 Aligned_cols=27 Identities=30% Similarity=0.395 Sum_probs=22.9
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
.+.+.+.+.|.||||||+..+.+.-.+
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 466889999999999999888877654
No 304
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=90.91 E-value=0.16 Score=51.07 Aligned_cols=30 Identities=27% Similarity=0.313 Sum_probs=26.4
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
..-+.+-|.||||||||+.+..++.+|-.-
T Consensus 33 ~~GE~lgIvGESGsGKSt~a~~i~gll~~~ 62 (539)
T COG1123 33 EPGEILGIVGESGSGKSTLALALMGLLPEG 62 (539)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccCCCC
Confidence 356788899999999999999999998754
No 305
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=90.91 E-value=0.18 Score=43.70 Aligned_cols=19 Identities=37% Similarity=0.625 Sum_probs=17.9
Q ss_pred EEEeCCCCCChhHHHHHHH
Q psy17386 59 CVISGESGAGKTETTKFIL 77 (276)
Q Consensus 59 IiisGeSGsGKTe~~k~il 77 (276)
|+|+|.+|.|||+.++.+-
T Consensus 3 I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred EEEeCCCCCchHHHHHHHH
Confidence 8999999999999999876
No 306
>PLN02348 phosphoribulokinase
Probab=90.90 E-value=0.35 Score=46.91 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=23.8
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.+.--|-|.|.||||||+.++.|.+.|-.
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34445668999999999999999999853
No 307
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=90.90 E-value=0.46 Score=46.83 Aligned_cols=57 Identities=16% Similarity=0.208 Sum_probs=40.1
Q ss_pred HHHhhcCcCCCCCCchhHHHHHHHHHhHhc-CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 24 VCEYHGAKMGSQEPHVFALAEAAYSSLQNL-DVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 24 ~~~y~~~~~~~~pPHifavA~~Ay~~m~~~-~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.++|+-....++--|--.+. .++.+... +-.+++++.|++|.|||+.++.+.+.|.+
T Consensus 8 ~~kyRP~~~~diiGq~~~v~--~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c 65 (451)
T PRK06305 8 SRKYRPQTFSEILGQDAVVA--VLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNC 65 (451)
T ss_pred HHHhCCCCHHHhcCcHHHHH--HHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 45566655555544443332 34544444 45799999999999999999999999865
No 308
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=90.86 E-value=0.33 Score=45.51 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=24.6
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
+.+=.|+++|.||+|||+.++.+.+.|
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999999888
No 309
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=90.86 E-value=0.23 Score=43.32 Aligned_cols=27 Identities=33% Similarity=0.363 Sum_probs=22.5
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..|.+...+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999999888877654
No 310
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=90.86 E-value=0.13 Score=41.87 Aligned_cols=26 Identities=27% Similarity=0.571 Sum_probs=21.1
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~y 79 (276)
..+..|+|.||+|+||+..++.+-++
T Consensus 19 ~~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp CSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 56677999999999999988866665
No 311
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=90.85 E-value=0.23 Score=42.86 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=23.5
Q ss_pred cCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 53 LDVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 53 ~~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
-...+.+.+.|.+|||||+..+.+...+
T Consensus 28 i~~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 28 VPKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 3467899999999999999988877654
No 312
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=90.84 E-value=0.22 Score=42.85 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=22.5
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
.....+.+.|++|||||+..|.+.-.+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 456789999999999999988776654
No 313
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=90.84 E-value=0.23 Score=43.36 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=22.9
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..+.|.--+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 51 (218)
T cd03290 25 PTGQLTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 467899999999999999888876554
No 314
>PRK00023 cmk cytidylate kinase; Provisional
Probab=90.83 E-value=0.22 Score=44.33 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=22.9
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.-.|.|.|.+|||||+.++.+.+.|-
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~ 29 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLG 29 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35689999999999999999998873
No 315
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=90.82 E-value=0.21 Score=43.60 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=19.9
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q psy17386 59 CVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 59 IiisGeSGsGKTe~~k~il~yL 80 (276)
|++.|.+|||||+.++.+-+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 8999999999999999987754
No 316
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=90.78 E-value=0.23 Score=45.67 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=21.4
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 58 SCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
-||++|-+|||||+.++.+.++|..
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 3899999999999999999999986
No 317
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=90.78 E-value=0.24 Score=43.68 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=22.8
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|.+|||||+..+.+.-.+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 467899999999999999988877643
No 318
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=90.78 E-value=0.23 Score=42.26 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=22.0
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.+.|++|||||+..+.+...+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999877766554
No 319
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=90.77 E-value=0.23 Score=43.86 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=22.9
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 46 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 46 PRGERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999988877643
No 320
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=90.77 E-value=0.24 Score=38.32 Aligned_cols=19 Identities=37% Similarity=0.578 Sum_probs=15.5
Q ss_pred EEEeCCCCCChhHHHHHHH
Q psy17386 59 CVISGESGAGKTETTKFIL 77 (276)
Q Consensus 59 IiisGeSGsGKTe~~k~il 77 (276)
|++.|.+|+|||...+.++
T Consensus 2 I~V~G~~g~GKTsLi~~l~ 20 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLC 20 (119)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHh
Confidence 8999999999999654443
No 321
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=90.77 E-value=0.25 Score=41.90 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=22.8
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.+.|.+|||||+..|.+.-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 467889999999999999888877654
No 322
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=90.75 E-value=0.23 Score=45.06 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=23.6
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
...+.+.|.|++|||||+..|.|.-.+.
T Consensus 36 ~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~ 63 (257)
T PRK11247 36 PAGQFVAVVGRSGCGKSTLLRLLAGLET 63 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4568899999999999999988876653
No 323
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.75 E-value=0.24 Score=44.28 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=23.3
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..|.+.-.+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 28 EEKELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 456889999999999999998888754
No 324
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.74 E-value=0.4 Score=49.59 Aligned_cols=55 Identities=22% Similarity=0.378 Sum_probs=38.6
Q ss_pred HHHhhcCcCCCC--CCchhHHHHHHHHHhHhcC-CCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 24 VCEYHGAKMGSQ--EPHVFALAEAAYSSLQNLD-VNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 24 ~~~y~~~~~~~~--pPHifavA~~Ay~~m~~~~-~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.++|+-+...++ .+|+ .++.+++...+ -.++++++|..|.|||+.++.+.+.|-+
T Consensus 6 arKyRPktFddVIGQe~v----v~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 6 ARKYRPRNFNELVGQNHV----SRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred HHHhCCCCHHHhcCcHHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 356665554444 3444 34455554444 4789999999999999999999998854
No 325
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=90.73 E-value=0.26 Score=41.95 Aligned_cols=26 Identities=35% Similarity=0.459 Sum_probs=23.5
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 57 QSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.-|+|.|-.|||||+-++.+-+.|..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 56999999999999999999988765
No 326
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.73 E-value=0.24 Score=43.49 Aligned_cols=27 Identities=26% Similarity=0.585 Sum_probs=23.2
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...|.+.+.|++|||||+..+.+.-.+
T Consensus 27 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 27 KPGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 467889999999999999988887654
No 327
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=90.73 E-value=0.26 Score=41.64 Aligned_cols=27 Identities=37% Similarity=0.596 Sum_probs=22.7
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.+.|++|||||+..+.+.-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 456889999999999999888877654
No 328
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=90.71 E-value=0.23 Score=43.85 Aligned_cols=28 Identities=32% Similarity=0.513 Sum_probs=23.7
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
...+.+.|.|++|||||+..+.+.-.+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (237)
T cd03252 26 KPGEVVGIVGRSGSGKSTLTKLIQRFYV 53 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 4678999999999999998888876653
No 329
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=90.70 E-value=0.23 Score=43.28 Aligned_cols=27 Identities=30% Similarity=0.473 Sum_probs=23.3
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..|.+.-.+
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 22 ADGEIVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999988887654
No 330
>PRK10646 ADP-binding protein; Provisional
Probab=90.69 E-value=0.57 Score=39.66 Aligned_cols=27 Identities=33% Similarity=0.370 Sum_probs=23.7
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.-.|++.|+-|||||+.+|-+++.|..
T Consensus 28 g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 28 ATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 347899999999999999999999853
No 331
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=90.69 E-value=0.23 Score=44.44 Aligned_cols=27 Identities=30% Similarity=0.302 Sum_probs=22.6
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 27 YPGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999888777654
No 332
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.68 E-value=0.24 Score=44.13 Aligned_cols=27 Identities=33% Similarity=0.463 Sum_probs=22.8
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..|.+.-.+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 27 EGGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999988877654
No 333
>PRK06921 hypothetical protein; Provisional
Probab=90.68 E-value=0.5 Score=43.25 Aligned_cols=29 Identities=24% Similarity=0.265 Sum_probs=25.7
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
....+++.|.+|+|||..+..|.+.+...
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~ 144 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRK 144 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhh
Confidence 46789999999999999999999988754
No 334
>KOG3354|consensus
Probab=90.68 E-value=0.24 Score=42.46 Aligned_cols=26 Identities=31% Similarity=0.334 Sum_probs=22.8
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 57 QSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
-.|+++|.||||||+..|.+.+-|..
T Consensus 13 ~~i~vmGvsGsGKSTigk~L~~~l~~ 38 (191)
T KOG3354|consen 13 YVIVVMGVSGSGKSTIGKALSEELGL 38 (191)
T ss_pred eeEEEEecCCCChhhHHHHHHHHhCC
Confidence 36999999999999999999887753
No 335
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=90.64 E-value=0.25 Score=43.31 Aligned_cols=28 Identities=29% Similarity=0.425 Sum_probs=23.6
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
...+.+.|.|++|||||+..+.+...+-
T Consensus 32 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 59 (224)
T TIGR02324 32 NAGECVALSGPSGAGKSTLLKSLYANYL 59 (224)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678899999999999999888876643
No 336
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.63 E-value=0.24 Score=44.93 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=23.0
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|.+|||||+..+.|.-.+
T Consensus 33 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 33 PKGQWTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467889999999999999988877654
No 337
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.63 E-value=0.38 Score=48.15 Aligned_cols=30 Identities=27% Similarity=0.408 Sum_probs=26.4
Q ss_pred cCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 53 LDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 53 ~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.+-.++++++|++|+|||+.++.+.+.|.+
T Consensus 33 ~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 33 GRLGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 445788899999999999999999999864
No 338
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=90.61 E-value=0.44 Score=49.11 Aligned_cols=55 Identities=20% Similarity=0.393 Sum_probs=39.3
Q ss_pred HHHhhcCcCCCC--CCchhHHHHHHHHHhHhc-CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 24 VCEYHGAKMGSQ--EPHVFALAEAAYSSLQNL-DVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 24 ~~~y~~~~~~~~--pPHifavA~~Ay~~m~~~-~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.++|+-+...++ ..|+-. +++.++.. +-.++++++|+.|.|||+.++.+.+.|-+
T Consensus 7 a~KyRP~~f~divGQe~vv~----~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 7 ARKWRPQTFAEVVGQEHVLT----ALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred HHHhCCCCHHHhcCcHHHHH----HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 456665555444 345443 45555544 56788999999999999999999999866
No 339
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.61 E-value=0.25 Score=43.92 Aligned_cols=27 Identities=37% Similarity=0.500 Sum_probs=22.4
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 25 AKGEFLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 466889999999999999888776543
No 340
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=90.61 E-value=0.2 Score=50.68 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=21.8
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
=-|+++|.+|||||++...+++++.
T Consensus 317 Glilv~G~tGSGKTTtl~a~l~~~~ 341 (564)
T TIGR02538 317 GMVLVTGPTGSGKTVSLYTALNILN 341 (564)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhC
Confidence 4578999999999999998888874
No 341
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=90.61 E-value=0.24 Score=45.04 Aligned_cols=27 Identities=19% Similarity=0.448 Sum_probs=22.6
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..|.|.-.+
T Consensus 36 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 62 (268)
T PRK10419 36 KSGETVALLGRSGCGKSTLARLLVGLE 62 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456899999999999999888876543
No 342
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.60 E-value=0.24 Score=42.61 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=21.5
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQ 78 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~ 78 (276)
...+.+.+.|++|||||+..|.+.-
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4678899999999999998887764
No 343
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.60 E-value=0.4 Score=51.05 Aligned_cols=55 Identities=18% Similarity=0.320 Sum_probs=39.0
Q ss_pred HHHhhcCcCCCCC--CchhHHHHHHHHHhHhc-CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 24 VCEYHGAKMGSQE--PHVFALAEAAYSSLQNL-DVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 24 ~~~y~~~~~~~~p--PHifavA~~Ay~~m~~~-~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.++|+-....++- .||-. .+++++.. +-.+++||+|+.|.|||+.++.+.+.|-+
T Consensus 7 aeKyRP~tFddIIGQe~Iv~----~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnc 64 (944)
T PRK14949 7 ARKWRPATFEQMVGQSHVLH----ALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 64 (944)
T ss_pred HHHhCCCCHHHhcCcHHHHH----HHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccC
Confidence 4566655554443 45442 35555444 56778899999999999999999999865
No 344
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=90.58 E-value=0.22 Score=44.10 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=21.3
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
+---+.+.|.||||||+..|+|+.-.
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhh
Confidence 34557899999999999999887654
No 345
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=90.58 E-value=0.27 Score=45.27 Aligned_cols=43 Identities=16% Similarity=0.112 Sum_probs=34.3
Q ss_pred HHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 41 ALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 41 avA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
..++.....++..+.-+.+++.|.+|||||+..+.+...+...
T Consensus 96 ~~~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~~ 138 (270)
T TIGR02858 96 GAADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILSTG 138 (270)
T ss_pred CcHHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCCC
Confidence 4566666677766555899999999999999999998887643
No 346
>PF13479 AAA_24: AAA domain
Probab=90.57 E-value=0.19 Score=44.23 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=19.1
Q ss_pred CCceEEEeCCCCCChhHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFI 76 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~i 76 (276)
++..|+|.|+||+|||+.++.+
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC
Confidence 4678999999999999987665
No 347
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=90.57 E-value=0.24 Score=44.61 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=23.4
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 37 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 37 AKNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 467899999999999999999887654
No 348
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.56 E-value=0.25 Score=44.20 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=22.8
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|+||||||+..+.+.-.+
T Consensus 28 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 28 PQNGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 466889999999999999888877654
No 349
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=90.56 E-value=0.27 Score=42.98 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=22.5
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 58 SCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.|.++|..|||||+..+.+++.+..
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~ 27 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQ 27 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCc
Confidence 5889999999999999999988764
No 350
>PLN02796 D-glycerate 3-kinase
Probab=90.55 E-value=0.23 Score=47.45 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=21.7
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 59 CVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 59 IiisGeSGsGKTe~~k~il~yL~~ 82 (276)
|-|+|.||||||+.++.+...|..
T Consensus 103 IGI~G~sGSGKSTLa~~L~~lL~~ 126 (347)
T PLN02796 103 IGISAPQGCGKTTLVFALVYLFNA 126 (347)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcc
Confidence 788999999999999999988864
No 351
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=90.54 E-value=0.25 Score=44.00 Aligned_cols=27 Identities=30% Similarity=0.325 Sum_probs=22.7
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 27 KPGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456889999999999999988877654
No 352
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=90.52 E-value=0.24 Score=44.30 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=23.1
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (255)
T PRK11300 29 REQEIVSLIGPNGAGKTTVFNCLTGFY 55 (255)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCc
Confidence 467899999999999999988887654
No 353
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=90.51 E-value=0.25 Score=44.21 Aligned_cols=27 Identities=19% Similarity=0.432 Sum_probs=22.6
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|+||||||+..|.+.-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 24 AAGEKVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999888876554
No 354
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=90.49 E-value=0.38 Score=41.93 Aligned_cols=34 Identities=15% Similarity=0.071 Sum_probs=27.8
Q ss_pred HHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 48 SSLQNLDVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 48 ~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
+..+.....-.|.++|-.|||||+..+.+++.+.
T Consensus 14 ~~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 14 RERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred HHHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3445555677899999999999999999998864
No 355
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.48 E-value=0.25 Score=44.19 Aligned_cols=28 Identities=21% Similarity=0.188 Sum_probs=23.6
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
...+.+.|.|++|||||+..|.+...+.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (254)
T PRK14273 31 LKNSITALIGPSGCGKSTFLRTLNRMND 58 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 4678999999999999999988876543
No 356
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=90.48 E-value=0.27 Score=43.72 Aligned_cols=24 Identities=38% Similarity=0.490 Sum_probs=21.3
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.|.|.|.+|||||+.++.+.+.|-
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~ 27 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLG 27 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999987654
No 357
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=90.48 E-value=0.27 Score=42.35 Aligned_cols=27 Identities=22% Similarity=0.468 Sum_probs=22.5
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 24 NAGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999888877654
No 358
>PRK01184 hypothetical protein; Provisional
Probab=90.46 E-value=0.22 Score=42.19 Aligned_cols=18 Identities=33% Similarity=0.453 Sum_probs=15.9
Q ss_pred eEEEeCCCCCChhHHHHH
Q psy17386 58 SCVISGESGAGKTETTKF 75 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~ 75 (276)
.|+++|.+|||||+.++.
T Consensus 3 ~i~l~G~~GsGKsT~a~~ 20 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSKI 20 (184)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 488999999999998874
No 359
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.46 E-value=0.28 Score=41.34 Aligned_cols=27 Identities=30% Similarity=0.521 Sum_probs=22.5
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.+.|++|||||+..+.+.-.+
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 467899999999999999877776554
No 360
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.46 E-value=0.25 Score=44.08 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=22.2
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~y 79 (276)
...+.+.|.|.+|||||+..+.|.-.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14255 29 NQNEITALIGPSGCGKSTYLRTLNRM 54 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 46789999999999999988888653
No 361
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.45 E-value=0.25 Score=42.91 Aligned_cols=28 Identities=14% Similarity=0.204 Sum_probs=23.4
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
...+.+.|.|++|||||+..+.+.-.+.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 4678999999999999998888766543
No 362
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=90.39 E-value=0.55 Score=44.60 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=31.6
Q ss_pred HHHHHHHhH-hcCCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 43 AEAAYSSLQ-NLDVNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 43 A~~Ay~~m~-~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
++...+... ..+..-.|-|+|.+|||||+.+..++.+|...
T Consensus 42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 333444333 25677899999999999999999999998764
No 363
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.36 E-value=0.26 Score=44.81 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=23.0
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.+.|++|||||+..+.+.-.+
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (271)
T PRK13632 33 NEGEYVAILGHNGSGKSTISKILTGLL 59 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999888777654
No 364
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=90.36 E-value=0.3 Score=41.01 Aligned_cols=27 Identities=30% Similarity=0.267 Sum_probs=21.0
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.+...||+|++|+|||+.+..|.-.|.
T Consensus 18 ~~g~~vi~G~Ng~GKStil~ai~~~L~ 44 (202)
T PF13476_consen 18 SPGLNVIYGPNGSGKSTILEAIRYALG 44 (202)
T ss_dssp -SEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 356789999999999999976655443
No 365
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.35 E-value=0.24 Score=49.28 Aligned_cols=40 Identities=28% Similarity=0.248 Sum_probs=28.7
Q ss_pred HHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 43 AEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 43 A~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
....++.+.... .=-|+++|.+|||||++...+++++-+-
T Consensus 246 ~~~~~~~~~~~p-~GliLvTGPTGSGKTTTLY~~L~~ln~~ 285 (500)
T COG2804 246 QLARLLRLLNRP-QGLILVTGPTGSGKTTTLYAALSELNTP 285 (500)
T ss_pred HHHHHHHHHhCC-CeEEEEeCCCCCCHHHHHHHHHHHhcCC
Confidence 344555554432 2346679999999999999999998753
No 366
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=90.35 E-value=0.27 Score=43.06 Aligned_cols=27 Identities=33% Similarity=0.395 Sum_probs=22.5
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 24 PKNSVYGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999888776543
No 367
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=90.35 E-value=0.31 Score=37.49 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=22.3
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 58 SCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
.+++.|.+|+|||..+-..+..+...
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~ 27 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDS 27 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhc
Confidence 37899999999999998888887754
No 368
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=90.35 E-value=0.28 Score=41.18 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=22.3
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.+.|.+|||||+..+.+.-.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999888776543
No 369
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=90.32 E-value=0.19 Score=45.69 Aligned_cols=35 Identities=20% Similarity=0.180 Sum_probs=28.7
Q ss_pred HHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 47 YSSLQNLDVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 47 y~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
...|..-++.|.++|.|++|+|||+.++.+.+.+.
T Consensus 7 id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~ 41 (249)
T cd01128 7 VDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAIT 41 (249)
T ss_pred eeeecccCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 33455567889999999999999999999887764
No 370
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=90.32 E-value=0.23 Score=49.81 Aligned_cols=30 Identities=23% Similarity=0.493 Sum_probs=26.2
Q ss_pred cCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 53 LDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 53 ~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
-.+.+.+.|.|+||||||+..|.++..+.-
T Consensus 363 i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p 392 (576)
T TIGR02204 363 VRPGETVALVGPSGAGKSTLFQLLLRFYDP 392 (576)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 357799999999999999999999987654
No 371
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=90.28 E-value=0.18 Score=50.72 Aligned_cols=27 Identities=37% Similarity=0.540 Sum_probs=25.0
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|+||||||+..+.++.++
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467999999999999999999999987
No 372
>PLN02200 adenylate kinase family protein
Probab=90.27 E-value=0.32 Score=43.70 Aligned_cols=27 Identities=19% Similarity=0.259 Sum_probs=22.9
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
..-.|++.|.+|||||+.++.+.+.+-
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g 68 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFG 68 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346789999999999999999888753
No 373
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=90.27 E-value=0.27 Score=42.38 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=22.9
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.+.|++|||||+..|.+.-.+
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999888776654
No 374
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=90.26 E-value=0.27 Score=43.85 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=22.5
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~y 79 (276)
...+.+.|.|++|||||+..+.|.-.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14240 27 EENQVTALIGPSGCGKSTFLRTLNRM 52 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 46788999999999999999888764
No 375
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=90.25 E-value=0.28 Score=42.76 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=23.5
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
...+.+.+.|.+|||||+.++.+.-.+.
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 55 (221)
T cd03244 28 KPGEKVGIVGRTGSGKSSLLLALFRLVE 55 (221)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4678999999999999999888876543
No 376
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=90.24 E-value=0.23 Score=49.69 Aligned_cols=30 Identities=20% Similarity=0.432 Sum_probs=26.0
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
+..+.|.|.|+||||||+..+.++..+.--
T Consensus 356 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~ 385 (571)
T TIGR02203 356 EPGETVALVGRSGSGKSTLVNLIPRFYEPD 385 (571)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccCCC
Confidence 467999999999999999999998886543
No 377
>PRK06835 DNA replication protein DnaC; Validated
Probab=90.23 E-value=0.76 Score=43.52 Aligned_cols=29 Identities=28% Similarity=0.358 Sum_probs=25.6
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
....+++.|.+|+|||..+..|.+.+...
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~ 210 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDR 210 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 34889999999999999999999988764
No 378
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=90.22 E-value=0.25 Score=46.41 Aligned_cols=23 Identities=39% Similarity=0.599 Sum_probs=20.4
Q ss_pred ceEEEeCCCCCChhHHHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~y 79 (276)
-.++|+|+||+|||+.+-.+++.
T Consensus 147 ~GvLi~G~SG~GKSelALeLi~r 169 (308)
T PRK05428 147 IGVLITGESGIGKSETALELIKR 169 (308)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 67999999999999998877765
No 379
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=90.22 E-value=0.27 Score=43.41 Aligned_cols=27 Identities=33% Similarity=0.546 Sum_probs=22.5
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.+.|++|||||+..+.+.-.+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (232)
T PRK10771 23 ERGERVAILGPSGAGKSTLLNLIAGFL 49 (232)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999888776543
No 380
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=90.22 E-value=0.58 Score=43.02 Aligned_cols=43 Identities=26% Similarity=0.276 Sum_probs=29.3
Q ss_pred CchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 37 PHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 37 PHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
|-+=.+.....-.++-. .++.+++.|++|+|||...+.+++-+
T Consensus 15 pT~dt~r~~~ll~~l~~-~~~pvLl~G~~GtGKT~li~~~l~~l 57 (272)
T PF12775_consen 15 PTVDTVRYSYLLDLLLS-NGRPVLLVGPSGTGKTSLIQNFLSSL 57 (272)
T ss_dssp --HHHHHHHHHHHHHHH-CTEEEEEESSTTSSHHHHHHHHHHCS
T ss_pred CcHHHHHHHHHHHHHHH-cCCcEEEECCCCCchhHHHHhhhccC
Confidence 44444555554444444 36889999999999999988877543
No 381
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=90.22 E-value=0.27 Score=43.49 Aligned_cols=28 Identities=18% Similarity=0.425 Sum_probs=24.0
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
...+.+.+.|++|||||+..+.|.-.+.
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 54 (238)
T cd03249 27 PPGKTVALVGSSGCGKSTVVSLLERFYD 54 (238)
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 4678999999999999999998887653
No 382
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=90.21 E-value=0.28 Score=43.56 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=23.1
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.+.|++|||||+..|.|.-.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (237)
T TIGR00968 24 PTGSLVALLGPSGSGKSTLLRIIAGLE 50 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999888887654
No 383
>PRK05642 DNA replication initiation factor; Validated
Probab=90.20 E-value=0.66 Score=41.46 Aligned_cols=26 Identities=12% Similarity=0.152 Sum_probs=22.3
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 57 QSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
-.+++.|.+|+|||..++.+...+..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~ 71 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQ 71 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999988877654
No 384
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=90.20 E-value=0.32 Score=42.75 Aligned_cols=26 Identities=35% Similarity=0.560 Sum_probs=23.5
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 57 QSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
+.+.+.|.+|||||.+++.+++-+..
T Consensus 24 ~H~~I~G~TGsGKS~~~~~ll~~l~~ 49 (229)
T PF01935_consen 24 RHIAIFGTTGSGKSNTVKVLLEELLK 49 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 56889999999999999999999884
No 385
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=90.19 E-value=0.39 Score=48.64 Aligned_cols=56 Identities=16% Similarity=0.303 Sum_probs=38.0
Q ss_pred HHhhcCcCCCC--CCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 25 CEYHGAKMGSQ--EPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 25 ~~y~~~~~~~~--pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
++|+-+...++ ++|+-..-..++ ...+-.++++++|+.|.|||+.++.+.+.|.+.
T Consensus 8 ~k~rP~~f~~viGq~~v~~~L~~~i---~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~ 65 (559)
T PRK05563 8 RKWRPQTFEDVVGQEHITKTLKNAI---KQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCL 65 (559)
T ss_pred HHhCCCcHHhccCcHHHHHHHHHHH---HcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 44555544443 456544333332 234568899999999999999999999987653
No 386
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.19 E-value=0.28 Score=43.76 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=22.7
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 26 EQNKITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 456889999999999999988887643
No 387
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=90.18 E-value=0.23 Score=48.58 Aligned_cols=31 Identities=32% Similarity=0.394 Sum_probs=27.4
Q ss_pred cCCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 53 LDVNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 53 ~~~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
-++.|++=+-||||||||+.-..+++-+...
T Consensus 310 L~~gqTlGlVGESGSGKsTlG~allrL~~s~ 340 (534)
T COG4172 310 LRRGQTLGLVGESGSGKSTLGLALLRLIPSQ 340 (534)
T ss_pred ecCCCeEEEEecCCCCcchHHHHHHhhcCcC
Confidence 4678999999999999999999999987654
No 388
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=90.18 E-value=0.28 Score=42.40 Aligned_cols=27 Identities=19% Similarity=0.385 Sum_probs=23.0
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..+.+...+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 24 AAGEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999988877654
No 389
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.17 E-value=0.26 Score=44.77 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=22.4
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..|.+.-.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (271)
T PRK13638 25 SLSPVTGLVGANGCGKSTLFMNLSGLL 51 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 456889999999999999888776544
No 390
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=90.16 E-value=0.25 Score=43.20 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=19.5
Q ss_pred CceEEEeCCCCCChhHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il 77 (276)
...++++|++|+|||+..|.|.
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~ 46 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIG 46 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 3789999999999999998884
No 391
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=90.13 E-value=0.35 Score=44.45 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=34.7
Q ss_pred chhHHHHHHHHHhHhc---------CCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 38 HVFALAEAAYSSLQNL---------DVNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 38 HifavA~~Ay~~m~~~---------~~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
.+..+..++++.++.. ++.+.|++.|.+|+|||+++..+..++...
T Consensus 45 ~~~~~~~e~l~~~~~~~~~~~~~~~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~ 99 (272)
T TIGR00064 45 LLKEILKEYLKEILKETDLELIVEENKPNVILFVGVNGVGKTTTIAKLANKLKKQ 99 (272)
T ss_pred HHHHHHHHHHHHHHcccchhhcccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 4566677777765432 345789999999999999998888887654
No 392
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=90.12 E-value=0.28 Score=44.03 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=22.9
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|.+|||||+..+.+.-.+
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 53 (254)
T PRK10418 27 QRGRVLALVGGSGSGKSLTCAAALGIL 53 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999888876654
No 393
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=90.10 E-value=0.26 Score=44.61 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=23.0
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 35 PAGKVTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 466889999999999999988877654
No 394
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.10 E-value=0.27 Score=45.11 Aligned_cols=28 Identities=25% Similarity=0.370 Sum_probs=24.1
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.+.+.+.|.|++|||||+..+.+.-.+.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~ 58 (286)
T PRK13646 31 EQGKYYAIVGQTGSGKSTLIQNINALLK 58 (286)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4678999999999999999998876643
No 395
>PRK13975 thymidylate kinase; Provisional
Probab=90.08 E-value=0.29 Score=41.72 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=22.7
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.-|++.|..|||||+.++.+-+.|-
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999998875
No 396
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.05 E-value=0.29 Score=44.00 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=23.3
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..+.|.-.+
T Consensus 36 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 36 PENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 467889999999999999999887654
No 397
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=90.04 E-value=0.29 Score=44.35 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=23.2
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|.+|||||+..+.+.-.+
T Consensus 44 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 44 EKNKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 467899999999999999988887654
No 398
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=90.04 E-value=0.29 Score=44.55 Aligned_cols=28 Identities=29% Similarity=0.356 Sum_probs=24.5
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
...+.+.|.|.+|||||+..+.|...+.
T Consensus 48 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 75 (271)
T PRK14238 48 HENEVTAIIGPSGCGKSTYIKTLNRMVE 75 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 4678999999999999999999987653
No 399
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.03 E-value=0.48 Score=48.64 Aligned_cols=56 Identities=21% Similarity=0.290 Sum_probs=40.2
Q ss_pred HHHHhhcCcCCCC--CCchhHHHHHHHHHhHhcC-CCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 23 KVCEYHGAKMGSQ--EPHVFALAEAAYSSLQNLD-VNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 23 ~~~~y~~~~~~~~--pPHifavA~~Ay~~m~~~~-~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
..++|+-+...++ .+|+- ..++++...+ -.++++++|+.|.|||+.++.+.+.|.+
T Consensus 6 la~KyRP~sf~dIiGQe~v~----~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 6 LTARYRPQTFAEVAGQETVK----AILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred HHHHhCCCCHHHhcCCHHHH----HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 3456766655554 35553 3445555554 4799999999999999999999999865
No 400
>PRK06526 transposase; Provisional
Probab=90.03 E-value=0.31 Score=44.41 Aligned_cols=29 Identities=24% Similarity=0.301 Sum_probs=25.0
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
+.+.+++.|.+|+|||..+..+...++..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 45679999999999999999998887753
No 401
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.03 E-value=0.3 Score=43.69 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=23.2
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|.+|||||+..+.+.-.+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (251)
T PRK14270 28 YENKITALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 467889999999999999998887654
No 402
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.02 E-value=0.55 Score=48.24 Aligned_cols=57 Identities=16% Similarity=0.261 Sum_probs=39.4
Q ss_pred HHHhhcCcCCCCCCchhHHHHHHHHHhHhc-CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 24 VCEYHGAKMGSQEPHVFALAEAAYSSLQNL-DVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 24 ~~~y~~~~~~~~pPHifavA~~Ay~~m~~~-~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.++|+-....++--|-..+ ..++.+... +-.+++|++|..|.|||+.++.+-+.|-+
T Consensus 7 ~~kyRP~~f~eivGQe~i~--~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 7 ARKYRPSKFADITAQEHIT--HTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred HHHHCCCCHHHhcCcHHHH--HHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3456655544443333222 235555544 67899999999999999999999999865
No 403
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=90.01 E-value=0.3 Score=42.71 Aligned_cols=27 Identities=30% Similarity=0.591 Sum_probs=22.5
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.+.|++|||||+..+.+.-.+
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 35 DAGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 456889999999999999888876654
No 404
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=90.01 E-value=0.29 Score=43.67 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=22.0
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~y 79 (276)
...+.+.|.|++|||||+..+.+...
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 29 YPNEITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 35688999999999999998887653
No 405
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=90.00 E-value=0.21 Score=50.38 Aligned_cols=29 Identities=17% Similarity=0.377 Sum_probs=25.5
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
...|.|.|.|+||||||+..|.++..+.-
T Consensus 365 ~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p 393 (592)
T PRK10790 365 PSRGFVALVGHTGSGKSTLASLLMGYYPL 393 (592)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 46799999999999999999999887654
No 406
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=89.99 E-value=0.29 Score=43.92 Aligned_cols=28 Identities=25% Similarity=0.261 Sum_probs=23.5
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
...+.+.|.|+||||||+..+.+.-.+-
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 56 (257)
T PRK10619 29 NAGDVISIIGSSGSGKSTFLRCINFLEK 56 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4568899999999999999888877643
No 407
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=89.98 E-value=0.3 Score=44.10 Aligned_cols=27 Identities=22% Similarity=0.428 Sum_probs=22.8
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..+.|.-.+
T Consensus 28 ~~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 28 KPGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999988876554
No 408
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=89.98 E-value=0.3 Score=42.78 Aligned_cols=27 Identities=19% Similarity=0.442 Sum_probs=23.4
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|.+|||||+..+.+.-.+
T Consensus 38 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 38 HPGEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 567899999999999999988887654
No 409
>PRK07952 DNA replication protein DnaC; Validated
Probab=89.96 E-value=0.61 Score=42.32 Aligned_cols=28 Identities=29% Similarity=0.315 Sum_probs=25.4
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
.+.++++|.+|+|||..+..|..+|...
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~ 126 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLR 126 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3689999999999999999999998864
No 410
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=89.95 E-value=0.3 Score=43.01 Aligned_cols=27 Identities=30% Similarity=0.333 Sum_probs=22.7
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
..+.+.|.|++|||||+..+.+...+.
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 31 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLIP 31 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457899999999999999888876543
No 411
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=89.95 E-value=0.3 Score=43.31 Aligned_cols=27 Identities=37% Similarity=0.399 Sum_probs=22.7
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.+.|++|||||+..|.+.-.+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 52 (242)
T TIGR03411 26 DPGELRVIIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999888877654
No 412
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=89.95 E-value=0.29 Score=43.98 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=23.2
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|.+|||||+..+.+.-.+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 28 EPRSVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 456889999999999999998887754
No 413
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=89.95 E-value=0.29 Score=45.32 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=23.0
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.+.|.+|||||+..|.+.-.+
T Consensus 28 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 54 (303)
T TIGR01288 28 ARGECFGLLGPNGAGKSTIARMLLGMI 54 (303)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999988887654
No 414
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=89.93 E-value=0.22 Score=51.40 Aligned_cols=29 Identities=28% Similarity=0.556 Sum_probs=25.4
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
...|.+.|.|+||||||+..|.++..+.-
T Consensus 498 ~~G~~vaIvG~SGsGKSTLlklL~gl~~p 526 (708)
T TIGR01193 498 KMNSKTTIVGMSGSGKSTLAKLLVGFFQA 526 (708)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 46799999999999999999999887653
No 415
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=89.92 E-value=0.29 Score=44.02 Aligned_cols=27 Identities=33% Similarity=0.318 Sum_probs=23.1
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..|.+.-.+
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 30 YPGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999888877654
No 416
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=89.91 E-value=0.27 Score=49.44 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=24.7
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
++-..+=+-||||||||+.+|.++..+.-
T Consensus 315 ~~GE~lglVGeSGsGKSTlar~i~gL~~P 343 (539)
T COG1123 315 REGETLGLVGESGSGKSTLARILAGLLPP 343 (539)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 45577889999999999999999888654
No 417
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.91 E-value=0.5 Score=48.67 Aligned_cols=59 Identities=22% Similarity=0.193 Sum_probs=39.1
Q ss_pred HHHHhhcCcCCCCCCchhHHH--HHHHHHhHh-cCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 23 KVCEYHGAKMGSQEPHVFALA--EAAYSSLQN-LDVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 23 ~~~~y~~~~~~~~pPHifavA--~~Ay~~m~~-~~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.+++|+-+...++.-|--.+. ..+...+.. ....+.++++|.+|+|||++++.+.+.+-
T Consensus 74 W~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 74 WVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred hHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 566777777777655544433 333333222 23446799999999999999998887654
No 418
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=89.89 E-value=0.72 Score=37.97 Aligned_cols=28 Identities=18% Similarity=0.309 Sum_probs=23.5
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
+....++.+.+|||||..+-.++..+..
T Consensus 24 ~~~~~ll~~~tGsGKT~~~~~~~~~l~~ 51 (184)
T PF04851_consen 24 EERRVLLNAPTGSGKTIIALALILELAR 51 (184)
T ss_dssp GCSEEEEEESTTSSHHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCcChhhhhhhhcccc
Confidence 4677899999999999999877777665
No 419
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=89.88 E-value=0.3 Score=39.05 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=18.6
Q ss_pred CceEEEeCCCCCChhHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il 77 (276)
...|++.|.+|||||+....++
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~ 24 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALV 24 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHh
Confidence 4579999999999999877765
No 420
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=89.87 E-value=0.33 Score=43.53 Aligned_cols=26 Identities=31% Similarity=0.316 Sum_probs=22.0
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
+....|.|+||||||...+.|.--|.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~ 50 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLG 50 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 45678999999999999888877765
No 421
>PRK13768 GTPase; Provisional
Probab=89.87 E-value=0.34 Score=43.93 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=23.6
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 58 SCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
.|++.|.+|+|||+.++.+..+|+..
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~ 29 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQ 29 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhc
Confidence 58999999999999999999998764
No 422
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=89.85 E-value=0.22 Score=50.28 Aligned_cols=30 Identities=23% Similarity=0.383 Sum_probs=25.8
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
...+.|.|.|+||||||+..|.++..+.-.
T Consensus 359 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~ 388 (588)
T PRK13657 359 KPGQTVAIVGPTGAGKSTLINLLQRVFDPQ 388 (588)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCcCCC
Confidence 467889999999999999999998886543
No 423
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.84 E-value=0.26 Score=42.75 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=19.9
Q ss_pred eEEEeCCCCCChhHHHHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL 80 (276)
.+.+.|++|||||+..+.+.-.+
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 78899999999999988887654
No 424
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=89.83 E-value=0.3 Score=44.42 Aligned_cols=27 Identities=19% Similarity=0.379 Sum_probs=22.7
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|.+|||||+..+.+.-.+
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 57 (272)
T PRK15056 31 PGGSIAALVGVNGSGKSTLFKALMGFV 57 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999988877654
No 425
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=89.83 E-value=0.32 Score=42.07 Aligned_cols=28 Identities=25% Similarity=0.432 Sum_probs=24.0
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.+.+.+.+.|++|||||+..+.+.-.+.
T Consensus 32 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (207)
T cd03369 32 KAGEKIGIVGRTGAGKSTLILALFRFLE 59 (207)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 4678999999999999999998877653
No 426
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=89.83 E-value=0.75 Score=38.75 Aligned_cols=35 Identities=17% Similarity=0.233 Sum_probs=26.9
Q ss_pred HhcCCCceEEEeCCCCCChhHHHHHHHHHHHhhcc
Q psy17386 51 QNLDVNQSCVISGESGAGKTETTKFILQYLCSVTS 85 (276)
Q Consensus 51 ~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~~~ 85 (276)
...+-++++++.|.+|+||++.++.+.+.+.....
T Consensus 14 ~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~ 48 (162)
T PF13177_consen 14 KSGRLPHALLFHGPSGSGKKTLALAFARALLCSNP 48 (162)
T ss_dssp HCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-
T ss_pred HcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCC
Confidence 34567899999999999999999999998876543
No 427
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.82 E-value=0.31 Score=43.49 Aligned_cols=27 Identities=37% Similarity=0.304 Sum_probs=23.0
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|.+|||||+..+.|...+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14262 27 FKNQITAIIGPSGCGKTTLLRSINRMN 53 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 456889999999999999999887654
No 428
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=89.81 E-value=0.21 Score=48.76 Aligned_cols=29 Identities=38% Similarity=0.462 Sum_probs=25.5
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
.--.+-+-||||||||.++..||+-|..-
T Consensus 35 ~GEtlAlVGESGSGKSvTa~sim~LLp~~ 63 (534)
T COG4172 35 AGETLALVGESGSGKSVTALSILGLLPSP 63 (534)
T ss_pred CCCEEEEEecCCCCccHHHHHHHHhcCCC
Confidence 44678899999999999999999999873
No 429
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.81 E-value=0.32 Score=43.51 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=23.1
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..+.|.-.+
T Consensus 29 ~~Ge~~~I~G~nGsGKSTLl~~i~G~~ 55 (251)
T PRK14244 29 YKREVTAFIGPSGCGKSTFLRCFNRMN 55 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 467889999999999999999887654
No 430
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=89.80 E-value=0.32 Score=42.11 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=21.9
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~y 79 (276)
...+.+.|.|++|||||+..+.+.-.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 24 KKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999988877654
No 431
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=89.79 E-value=0.42 Score=41.24 Aligned_cols=27 Identities=30% Similarity=0.350 Sum_probs=23.5
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.+.|++.|--|||||+.-|.+-+.|-.
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~ 28 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNL 28 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCC
Confidence 467999999999999999999777653
No 432
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=89.78 E-value=0.31 Score=46.32 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=23.4
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.+..+++.|++|+|||..++.+.+.+.
T Consensus 155 ~p~gvLL~GppGtGKT~lakaia~~l~ 181 (364)
T TIGR01242 155 PPKGVLLYGPPGTGKTLLAKAVAHETN 181 (364)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhCC
Confidence 467899999999999999999877653
No 433
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=89.78 E-value=0.32 Score=43.17 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=22.7
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|.+|||||+..+.+.-.+
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 27 NSGEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999888877654
No 434
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=89.77 E-value=0.26 Score=39.55 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=17.5
Q ss_pred EEEeCCCCCChhHHHHHHH
Q psy17386 59 CVISGESGAGKTETTKFIL 77 (276)
Q Consensus 59 IiisGeSGsGKTe~~k~il 77 (276)
|++.|.+|+|||...+.+.
T Consensus 2 i~l~G~~g~GKTtL~~~l~ 20 (170)
T cd01876 2 IAFAGRSNVGKSSLINALT 20 (170)
T ss_pred EEEEcCCCCCHHHHHHHHh
Confidence 7899999999999988887
No 435
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=89.76 E-value=0.3 Score=44.29 Aligned_cols=27 Identities=30% Similarity=0.343 Sum_probs=22.6
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|.+|||||+..|.|.-.+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (269)
T PRK11831 31 PRGKITAIMGPSGIGKTTLLRLIGGQI 57 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999888776554
No 436
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=89.76 E-value=0.31 Score=43.93 Aligned_cols=27 Identities=19% Similarity=0.367 Sum_probs=23.3
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|.+|||||+..+.|.-.+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 54 (262)
T PRK09984 28 HHGEMVALLGPSGSGKSTLLRHLSGLI 54 (262)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 467899999999999999988887654
No 437
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=89.75 E-value=0.3 Score=44.03 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=22.8
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|.+|||||+..+.|.-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 52 (258)
T PRK13548 26 RPGEVVAILGPNGAGKSTLLRALSGEL 52 (258)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999888887654
No 438
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=89.75 E-value=0.64 Score=46.92 Aligned_cols=55 Identities=20% Similarity=0.291 Sum_probs=38.9
Q ss_pred HHHhhcCcCCCC--CCchhHHHHHHHHHhH-hcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 24 VCEYHGAKMGSQ--EPHVFALAEAAYSSLQ-NLDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 24 ~~~y~~~~~~~~--pPHifavA~~Ay~~m~-~~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.++|+-....++ ++|+- +.++.++ ..+-.++++++|+.|+|||+.++.+.+.|.+
T Consensus 5 ~~KyRP~~fdeiiGqe~v~----~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c 62 (535)
T PRK08451 5 ALKYRPKHFDELIGQESVS----KTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVC 62 (535)
T ss_pred HHHHCCCCHHHccCcHHHH----HHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcC
Confidence 456776665554 34442 3333333 4456788999999999999999999999864
No 439
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.75 E-value=0.31 Score=43.82 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=22.9
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|.+|||||+..+.|.-.+
T Consensus 36 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 62 (258)
T PRK14268 36 PKNSVTALIGPSGCGKSTFIRCLNRMN 62 (258)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456889999999999999988887654
No 440
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.74 E-value=0.39 Score=48.96 Aligned_cols=54 Identities=26% Similarity=0.367 Sum_probs=37.3
Q ss_pred HHhhcCcCCCCC--CchhHHHHHHHHHhHh-cCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 25 CEYHGAKMGSQE--PHVFALAEAAYSSLQN-LDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 25 ~~y~~~~~~~~p--PHifavA~~Ay~~m~~-~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
++|+-+...++- .|+-.. ++.++. .+-+++++++|..|.|||+.++.+.+.|-+
T Consensus 5 ~kyRP~~f~eivGq~~i~~~----L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 5 RKYRPATFAEVVGQEHVTEP----LSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred HHhCCCcHHHhcCcHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 456655544442 444333 444444 456788999999999999999999988764
No 441
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=89.72 E-value=0.32 Score=44.10 Aligned_cols=36 Identities=22% Similarity=0.198 Sum_probs=28.0
Q ss_pred HHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 48 SSLQNLDVNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 48 ~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
+.+-.-...+.+.+.|++|||||+..|.+.-.+...
T Consensus 18 ~~i~~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~ 53 (255)
T cd03236 18 HRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPN 53 (255)
T ss_pred hcCCCCCCCCEEEEECCCCCCHHHHHHHHhCCcCCC
Confidence 334323567899999999999999999988886543
No 442
>PRK05439 pantothenate kinase; Provisional
Probab=89.70 E-value=0.58 Score=44.05 Aligned_cols=30 Identities=23% Similarity=0.302 Sum_probs=24.9
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
+..--|-|+|.+|||||+.++.+...|...
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~ 113 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRW 113 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 455678899999999999999988877543
No 443
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.68 E-value=0.34 Score=40.00 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=20.6
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQ 78 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~ 78 (276)
...+.+.|.|.+|||||+..+.+.-
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g 47 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAG 47 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3568899999999999998777643
No 444
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=89.68 E-value=0.31 Score=46.33 Aligned_cols=27 Identities=33% Similarity=0.310 Sum_probs=22.4
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~iaGl~ 48 (352)
T PRK11144 22 PAQGITAIFGRSGAGKTSLINAISGLT 48 (352)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999888776543
No 445
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.66 E-value=0.32 Score=44.35 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=22.8
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 44 ~~Ge~~~IiG~nGsGKSTLl~~l~Gl~ 70 (274)
T PRK14265 44 PAKKIIAFIGPSGCGKSTLLRCFNRMN 70 (274)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 456889999999999999988887553
No 446
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=89.66 E-value=0.25 Score=49.67 Aligned_cols=30 Identities=27% Similarity=0.470 Sum_probs=26.5
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
...+.+-+.|+||||||+..+.+++++-..
T Consensus 353 ~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~ 382 (567)
T COG1132 353 EPGEKVAIVGPSGSGKSTLIKLLLRLYDPT 382 (567)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCCC
Confidence 467888899999999999999999997753
No 447
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=89.65 E-value=0.42 Score=41.33 Aligned_cols=28 Identities=21% Similarity=0.245 Sum_probs=23.1
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
+.+.+.+.|++|+|||..+..+....+.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~ 38 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAAR 38 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5688999999999999998776666554
No 448
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=89.65 E-value=0.27 Score=41.17 Aligned_cols=23 Identities=39% Similarity=0.433 Sum_probs=19.9
Q ss_pred eEEEeCCCCCChhHHHHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL 80 (276)
-++++|.+|||||+..+.+++..
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~ 24 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQ 24 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhcc
Confidence 37899999999999999888763
No 449
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.64 E-value=0.63 Score=47.78 Aligned_cols=55 Identities=18% Similarity=0.347 Sum_probs=39.5
Q ss_pred HHHhhcCcCCCCC--CchhHHHHHHHHHhHhc-CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 24 VCEYHGAKMGSQE--PHVFALAEAAYSSLQNL-DVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 24 ~~~y~~~~~~~~p--PHifavA~~Ay~~m~~~-~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.++|+-+...++- .|+- +..+++... +-.++++++|..|.|||+.++.+.+.|-+
T Consensus 7 a~KyRP~~f~dviGQe~vv----~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 7 ARKYRPRSFSEMVGQEHVV----QALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred HHHHCCCCHHHhcCcHHHH----HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4567766555543 4433 355555544 45688999999999999999999999865
No 450
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.64 E-value=0.33 Score=42.72 Aligned_cols=27 Identities=22% Similarity=0.518 Sum_probs=22.7
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.+.|.+|||||+..+.+.-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 26 PAGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 467889999999999999888776554
No 451
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.64 E-value=0.37 Score=49.72 Aligned_cols=55 Identities=16% Similarity=0.329 Sum_probs=38.5
Q ss_pred HHHhhcCcCCCC--CCchhHHHHHHHHHhH-hcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 24 VCEYHGAKMGSQ--EPHVFALAEAAYSSLQ-NLDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 24 ~~~y~~~~~~~~--pPHifavA~~Ay~~m~-~~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.++|+-+...++ ..|+-. .+++++ ..+-.++++|+|..|.|||+.++.+.+.|-+
T Consensus 7 arKYRPqtFddVIGQe~vv~----~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 7 ARKWRPRDFTTLVGQEHVVR----ALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred HHHhCCCcHHHHcCcHHHHH----HHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 456665554443 344443 344444 3456788999999999999999999999875
No 452
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=89.64 E-value=0.33 Score=44.00 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=23.5
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|.+|||||+..+.|.-.+
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 43 PEKTVTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 467889999999999999999888654
No 453
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=89.63 E-value=0.32 Score=45.02 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=23.5
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
...+.+.+.|.+|||||+..|.+.-.+.
T Consensus 17 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~ 44 (302)
T TIGR01188 17 REGEVFGFLGPNGAGKTTTIRMLTTLLR 44 (302)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4568899999999999999888876653
No 454
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.63 E-value=0.33 Score=43.43 Aligned_cols=27 Identities=30% Similarity=0.345 Sum_probs=22.9
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|.+|||||+..+.+.--+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 28 PENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 467889999999999999888877654
No 455
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=89.63 E-value=0.33 Score=39.92 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=21.3
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~y 79 (276)
...+.+.+.|++|||||+..+.+...
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 45688899999999999987776544
No 456
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=89.62 E-value=0.57 Score=43.83 Aligned_cols=28 Identities=21% Similarity=0.359 Sum_probs=24.1
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.....++++|.+|+|||+.++.+.+.+.
T Consensus 49 ~~~~~~ll~GppG~GKT~la~~ia~~l~ 76 (328)
T PRK00080 49 EALDHVLLYGPPGLGKTTLANIIANEMG 76 (328)
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHHhC
Confidence 3457899999999999999999888764
No 457
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.60 E-value=0.66 Score=47.15 Aligned_cols=54 Identities=20% Similarity=0.326 Sum_probs=38.1
Q ss_pred HHhhcCcCCCCC--CchhHHHHHHHHHhHh-cCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 25 CEYHGAKMGSQE--PHVFALAEAAYSSLQN-LDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 25 ~~y~~~~~~~~p--PHifavA~~Ay~~m~~-~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
++|+-+...++- .|+- +.++.... ++-.++++++|+.|.|||+.++.+.+.|.+
T Consensus 8 ~k~RP~~f~~iiGq~~v~----~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c 64 (576)
T PRK14965 8 RKYRPQTFSDLTGQEHVS----RTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNC 64 (576)
T ss_pred HHhCCCCHHHccCcHHHH----HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcC
Confidence 456655555543 4443 34444443 456788999999999999999999999864
No 458
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.56 E-value=0.33 Score=44.14 Aligned_cols=27 Identities=19% Similarity=0.275 Sum_probs=23.1
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 37 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 63 (269)
T PRK14259 37 PRGKVTALIGPSGCGKSTVLRSLNRMN 63 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 467889999999999999998887653
No 459
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=89.54 E-value=0.71 Score=44.48 Aligned_cols=27 Identities=26% Similarity=0.215 Sum_probs=24.0
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 57 QSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
..+++.|.+|+|||..++.+.+.+...
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~ 163 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILEN 163 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 468999999999999999999988754
No 460
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.52 E-value=0.32 Score=44.33 Aligned_cols=27 Identities=15% Similarity=0.297 Sum_probs=22.6
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..+.|.-.+
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 57 (280)
T PRK13649 31 EDGSYTAFIGHTGSGKSTIMQLLNGLH 57 (280)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999888877654
No 461
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.52 E-value=0.34 Score=43.66 Aligned_cols=27 Identities=30% Similarity=0.305 Sum_probs=23.5
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|.+|||||+..|.+.-.+
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl~ 57 (259)
T PRK14260 31 YRNKVTAIIGPSGCGKSTFIKTLNRIS 57 (259)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 457889999999999999999888764
No 462
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=89.52 E-value=0.37 Score=42.09 Aligned_cols=48 Identities=17% Similarity=0.297 Sum_probs=28.8
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHhhccCCcchHHHHHHHh-----HHHHHHhcCC
Q psy17386 59 CVISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEA-----NTILEAFGNA 108 (276)
Q Consensus 59 IiisGeSGsGKTe~~k~il~yL~~~~~~~~~~~~~~i~~a-----~~ILeaFGnA 108 (276)
|.++|.+|||||+.++.+-+. -.. .-..+.+...+.+- ..|.+.||..
T Consensus 2 i~itG~~gsGKst~~~~l~~~-g~~-~i~~D~i~~~~~~~~~~~~~~i~~~fG~~ 54 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEEL-GAF-GISADRLAKRYTEPDSPILSELVSLLGPS 54 (196)
T ss_pred EEEECCCCccHHHHHHHHHHC-CCE-EEecchHHHHHHhcCcHHHHHHHHHhChh
Confidence 789999999999999876543 110 00123444444432 2366777764
No 463
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=89.51 E-value=0.5 Score=49.06 Aligned_cols=55 Identities=16% Similarity=0.311 Sum_probs=37.8
Q ss_pred HHHhhcCcCCCCC--CchhHHHHHHHHHhHh-cCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 24 VCEYHGAKMGSQE--PHVFALAEAAYSSLQN-LDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 24 ~~~y~~~~~~~~p--PHifavA~~Ay~~m~~-~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.++|+-+...++- .|+-. .++.++. .+-.+++|++|..|.|||+.++.+.+.|-+
T Consensus 7 arKYRP~tFddIIGQe~vv~----~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC 64 (709)
T PRK08691 7 ARKWRPKTFADLVGQEHVVK----ALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 (709)
T ss_pred HHHhCCCCHHHHcCcHHHHH----HHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 4566655544442 34432 4444444 445789999999999999999999998754
No 464
>CHL00181 cbbX CbbX; Provisional
Probab=89.50 E-value=0.36 Score=44.70 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=23.2
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 58 SCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
.|++.|.+|+|||+.++.+.+.+...
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~ 86 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKL 86 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 48999999999999999999987654
No 465
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.50 E-value=0.34 Score=43.89 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=23.1
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..|.+.-.+
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (261)
T PRK14263 32 RKNEITGFIGPSGCGKSTVLRSLNRMN 58 (261)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHccc
Confidence 467899999999999999998886654
No 466
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.49 E-value=0.34 Score=42.68 Aligned_cols=28 Identities=21% Similarity=0.509 Sum_probs=23.5
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.+.+.+.+.|.+|||||+..+.+.-.+.
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~ 52 (236)
T cd03253 25 PAGKKVAIVGPSGSGKSTILRLLFRFYD 52 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 4678899999999999999888876543
No 467
>PLN02318 phosphoribulokinase/uridine kinase
Probab=89.47 E-value=0.5 Score=48.35 Aligned_cols=42 Identities=29% Similarity=0.297 Sum_probs=29.5
Q ss_pred hHHHHHHHHHhHhcC-CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 40 FALAEAAYSSLQNLD-VNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 40 favA~~Ay~~m~~~~-~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
|-++-+|-+-+.... ..-.|-|.|.||||||+.++.|...+.
T Consensus 48 ~~~~ira~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglLp 90 (656)
T PLN02318 48 FFVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFMP 90 (656)
T ss_pred hhhhhHHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhCC
Confidence 444555544444332 335677899999999999999998863
No 468
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=89.44 E-value=0.3 Score=42.70 Aligned_cols=23 Identities=26% Similarity=0.549 Sum_probs=19.4
Q ss_pred CCCceEEEeCCCCCChhHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFI 76 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~i 76 (276)
..-.|+++.|.||||||+..|.+
T Consensus 35 ~aGECvvL~G~SG~GKStllr~L 57 (235)
T COG4778 35 NAGECVVLHGPSGSGKSTLLRSL 57 (235)
T ss_pred cCccEEEeeCCCCCcHHHHHHHH
Confidence 34579999999999999987754
No 469
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=89.43 E-value=0.33 Score=43.31 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=22.1
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~y 79 (276)
...+.+.|.|++|||||+..+.+.-.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 31 NKGEIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 46788999999999999998877653
No 470
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=89.43 E-value=0.29 Score=42.66 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=21.0
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
.--.|.|+|.||+|||+..|.+..-.
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhcc
Confidence 44679999999999999887765543
No 471
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=89.36 E-value=0.44 Score=41.52 Aligned_cols=37 Identities=16% Similarity=0.124 Sum_probs=27.9
Q ss_pred HHHhHhcC--CCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 47 YSSLQNLD--VNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 47 y~~m~~~~--~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
+..|+..+ +...++++|++|+|||..+..+...++..
T Consensus 8 LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~ 46 (218)
T cd01394 8 LDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQ 46 (218)
T ss_pred HHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 44455433 46778999999999999998888776643
No 472
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=89.34 E-value=0.39 Score=42.04 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=21.7
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
.--|+++|-||+|||+.++.+.+.+
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3468999999999999999888875
No 473
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=89.31 E-value=0.35 Score=43.74 Aligned_cols=27 Identities=22% Similarity=0.449 Sum_probs=22.8
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|+||||||+..+.|.-.+
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T TIGR02769 35 EEGETVGLLGRSGCGKSTLARLLLGLE 61 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999888877654
No 474
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=89.31 E-value=0.32 Score=43.61 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=22.8
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 20 ~~Gei~~l~G~nGsGKSTLl~~l~Gl~ 46 (248)
T PRK03695 20 RAGEILHLVGPNGAGKSTLLARMAGLL 46 (248)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 456889999999999999988877654
No 475
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=89.30 E-value=0.36 Score=43.68 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=23.2
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 60 (264)
T PRK14243 34 PKNQITAFIGPSGCGKSTILRCFNRLN 60 (264)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 467899999999999999999887643
No 476
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.30 E-value=0.36 Score=43.04 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=23.0
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|.+|||||+..|.+.-.+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 54 (252)
T PRK14272 28 QRGTVNALIGPSGCGKTTFLRAINRMH 54 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 467889999999999999988877654
No 477
>PRK07429 phosphoribulokinase; Provisional
Probab=89.30 E-value=0.32 Score=46.04 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=22.2
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.=-|-|+|.||||||+.++.+.+.|-
T Consensus 8 ~~IIgI~G~SGSGKSTla~~L~~ll~ 33 (327)
T PRK07429 8 PVLLGVAGDSGCGKTTFLRGLADLLG 33 (327)
T ss_pred CEEEEEECCCCCCHHHHHHHHHhHhc
Confidence 34677899999999999999988874
No 478
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=89.30 E-value=0.34 Score=46.17 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=22.9
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|+||||||+..|.|.-.+
T Consensus 26 ~~Ge~~~llGpsGsGKSTLLr~IaGl~ 52 (353)
T PRK10851 26 PSGQMVALLGPSGSGKTTLLRIIAGLE 52 (353)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356899999999999999888877654
No 479
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.28 E-value=0.36 Score=42.99 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=23.0
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (249)
T PRK14253 27 PARQVTALIGPSGCGKSTLLRCLNRMN 53 (249)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 456899999999999999988887653
No 480
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=89.26 E-value=0.56 Score=49.24 Aligned_cols=55 Identities=18% Similarity=0.323 Sum_probs=38.8
Q ss_pred HHHhhcCcCCCC--CCchhHHHHHHHHHhHhc-CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 24 VCEYHGAKMGSQ--EPHVFALAEAAYSSLQNL-DVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 24 ~~~y~~~~~~~~--pPHifavA~~Ay~~m~~~-~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.++|+-+...++ ..|+- +.+++++.. +-.+.+||+|..|.|||+.++.+.+.|-+
T Consensus 7 arKYRPqtFdEVIGQe~Vv----~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnC 64 (830)
T PRK07003 7 ARKWRPKDFASLVGQEHVV----RALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 (830)
T ss_pred HHHhCCCcHHHHcCcHHHH----HHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 456766655444 23443 345555554 45889999999999999999999998864
No 481
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=89.26 E-value=0.33 Score=43.15 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=22.1
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~y 79 (276)
...+.+.|.|.+|||||+..+.+.-.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 25 RPGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 45688999999999999988877665
No 482
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=89.25 E-value=0.33 Score=43.88 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=22.2
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..+.|.--+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 57 (265)
T PRK10253 31 PDGHFTAIIGPNGCGKSTLLRTLSRLM 57 (265)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 467899999999999999887766543
No 483
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=89.24 E-value=0.35 Score=43.81 Aligned_cols=27 Identities=30% Similarity=0.501 Sum_probs=22.7
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..+.+.-.+
T Consensus 37 ~~Ge~~~i~G~NGsGKSTLl~~l~Gl~ 63 (267)
T PRK15112 37 REGQTLAIIGENGSGKSTLAKMLAGMI 63 (267)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 467889999999999999888877654
No 484
>PRK14526 adenylate kinase; Provisional
Probab=89.24 E-value=0.35 Score=42.75 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=20.0
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q psy17386 59 CVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 59 IiisGeSGsGKTe~~k~il~yL 80 (276)
|++.|.+|||||+.++.+.+.+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999988764
No 485
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=89.23 E-value=0.47 Score=42.51 Aligned_cols=29 Identities=21% Similarity=0.281 Sum_probs=25.7
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhc
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLCSVT 84 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~~~~ 84 (276)
.=+|++.|-++.|||..++.|.+||..++
T Consensus 12 kl~ivmVGLPArGKs~ia~kl~ryL~w~g 40 (222)
T PF01591_consen 12 KLVIVMVGLPARGKSYIARKLCRYLNWLG 40 (222)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 45789999999999999999999998764
No 486
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=89.21 E-value=0.36 Score=41.15 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=20.4
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q psy17386 59 CVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 59 IiisGeSGsGKTe~~k~il~yL 80 (276)
|++.|-.|||||+.++.+-+++
T Consensus 2 I~ieG~~GsGKSTl~~~L~~~~ 23 (193)
T cd01673 2 IVVEGNIGAGKSTLAKELAEHL 23 (193)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999998875
No 487
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=89.21 E-value=0.35 Score=44.21 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=23.0
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..|.|.-.+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~laG~~ 51 (272)
T PRK13547 25 EPGRVTALLGRNGAGKSTLLKALAGDL 51 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456889999999999999998887654
No 488
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=89.18 E-value=0.25 Score=49.04 Aligned_cols=28 Identities=25% Similarity=0.471 Sum_probs=24.7
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
...+.+.+.|+||||||+..|.++..+-
T Consensus 346 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 373 (529)
T TIGR02857 346 PPGERVALVGPSGAGKSTLLNLLLGFVD 373 (529)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4678999999999999999999988754
No 489
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=89.18 E-value=0.28 Score=46.66 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=16.9
Q ss_pred ceEEEeCCCCCChhHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFI 76 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~i 76 (276)
--+++.|.||+|||+..+.|
T Consensus 30 ef~vllGPSGcGKSTlLr~I 49 (338)
T COG3839 30 EFVVLLGPSGCGKSTLLRMI 49 (338)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46899999999999986654
No 490
>KOG0056|consensus
Probab=89.16 E-value=0.36 Score=48.32 Aligned_cols=32 Identities=19% Similarity=0.473 Sum_probs=27.5
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHHhhcc
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLCSVTS 85 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~~~~ 85 (276)
...|.|-+-|+||+|||+.++.+++++-..++
T Consensus 562 ~pGktvAlVG~SGaGKSTimRlLfRffdv~sG 593 (790)
T KOG0056|consen 562 QPGKTVALVGPSGAGKSTIMRLLFRFFDVNSG 593 (790)
T ss_pred cCCcEEEEECCCCCchhHHHHHHHHHhhccCc
Confidence 34599999999999999999999999765544
No 491
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=89.16 E-value=0.63 Score=47.57 Aligned_cols=58 Identities=16% Similarity=0.186 Sum_probs=38.9
Q ss_pred HHHhhcCcCCCCCCchhHHHHHHHHHhH-hcCCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 24 VCEYHGAKMGSQEPHVFALAEAAYSSLQ-NLDVNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 24 ~~~y~~~~~~~~pPHifavA~~Ay~~m~-~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
.++|+-+...++--|-.. -+.+++++ .++-.++++++|.+|.|||++++.+.+.|-+.
T Consensus 15 a~KyRP~~f~dliGq~~~--v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 15 ARKYRPQTFDDLIGQEAM--VRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred HhhhCCCCHHHhcCcHHH--HHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 456665554444322211 13344444 34568999999999999999999999998653
No 492
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.16 E-value=0.35 Score=44.06 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=23.3
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|.+|||||+..|.+.-.+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 52 (275)
T PRK13639 26 EKGEMVALLGPNGAGKSTLFLHFNGIL 52 (275)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999998887654
No 493
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=89.12 E-value=0.44 Score=43.28 Aligned_cols=28 Identities=21% Similarity=0.141 Sum_probs=22.8
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
+...++++|++|+|||..+.+++...+.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~ 62 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQAS 62 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 5678999999999999988776666554
No 494
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=89.08 E-value=0.63 Score=43.91 Aligned_cols=39 Identities=21% Similarity=0.300 Sum_probs=32.0
Q ss_pred HHHHHhH--hcCCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 45 AAYSSLQ--NLDVNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 45 ~Ay~~m~--~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
.+|+.+. ..+-.++++++|.+|.|||..++.+-+.|.+.
T Consensus 8 ~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~ 48 (325)
T PRK08699 8 EQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCE 48 (325)
T ss_pred HHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 4556555 35778999999999999999999999998653
No 495
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=89.05 E-value=0.5 Score=40.42 Aligned_cols=46 Identities=22% Similarity=0.491 Sum_probs=29.2
Q ss_pred EEEeCCCCCChhHHHHHHHHHH-HhhccCCcchHHHHHHHh-----HHHHHHhc
Q psy17386 59 CVISGESGAGKTETTKFILQYL-CSVTSNVSTWVEQQILEA-----NTILEAFG 106 (276)
Q Consensus 59 IiisGeSGsGKTe~~k~il~yL-~~~~~~~~~~~~~~i~~a-----~~ILeaFG 106 (276)
|.++|-.|||||+.++.+-+.. +.+-. ...+..++..- ..|.+.||
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i~--~D~~~~~~~~~~~~~~~~i~~~fg 53 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVID--ADKIAHQVVEKGSPAYEKIVDHFG 53 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEEe--CCHHHHHHHhcCChHHHHHHHHHC
Confidence 7899999999999998777653 22111 23344444432 23677787
No 496
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=89.01 E-value=0.37 Score=44.67 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=24.1
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
...+...+.|++|||||+..|.++-.+..
T Consensus 29 ~~Gei~gllG~NGAGKTTllk~l~gl~~p 57 (293)
T COG1131 29 EPGEIFGLLGPNGAGKTTLLKILAGLLKP 57 (293)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 34578899999999999999988877654
No 497
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=89.00 E-value=0.44 Score=43.96 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=24.4
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHhhc
Q psy17386 58 SCVISGESGAGKTETTKFILQYLCSVT 84 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL~~~~ 84 (276)
.|.|.|.+|||||+.+..++..|...+
T Consensus 3 ~i~i~G~~gSGKTTLi~~Li~~L~~~G 29 (274)
T PRK14493 3 VLSIVGYKATGKTTLVERLVDRLSGRG 29 (274)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 588999999999999999999998754
No 498
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.00 E-value=0.37 Score=45.23 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=24.2
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.+.+.+.|.|+||||||+..+.+.-.+.
T Consensus 50 ~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~ 77 (320)
T PRK13631 50 EKNKIYFIIGNSGSGKSTLVTHFNGLIK 77 (320)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5679999999999999999888876653
No 499
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=89.00 E-value=0.36 Score=41.14 Aligned_cols=20 Identities=25% Similarity=0.518 Sum_probs=18.6
Q ss_pred EEEeCCCCCChhHHHHHHHH
Q psy17386 59 CVISGESGAGKTETTKFILQ 78 (276)
Q Consensus 59 IiisGeSGsGKTe~~k~il~ 78 (276)
|.++|.+|||||+.++.+.+
T Consensus 2 i~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999887
No 500
>PTZ00088 adenylate kinase 1; Provisional
Probab=88.99 E-value=0.38 Score=43.16 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=21.9
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
..|++.|.+|||||+.++.+-+.+-
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999888753
Done!