Query psy17386
Match_columns 276
No_of_seqs 151 out of 1236
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 21:08:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17386.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17386hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4db1_A Myosin-7; S1DC, cardiac 100.0 1.9E-98 7E-103 764.3 27.6 264 1-266 116-509 (783)
2 1lkx_A Myosin IE heavy chain; 100.0 4E-98 1E-102 755.2 29.1 266 1-266 39-434 (697)
3 1w7j_A Myosin VA; motor protei 100.0 3.6E-98 1E-102 764.4 27.7 266 1-266 101-485 (795)
4 1kk8_A Myosin heavy chain, str 100.0 1.2E-97 4E-102 763.9 26.5 266 1-266 114-508 (837)
5 1w9i_A Myosin II heavy chain; 100.0 2.9E-97 1E-101 754.0 27.3 264 1-265 117-501 (770)
6 4anj_A Unconventional myosin-V 100.0 1.8E-96 6E-101 767.9 26.5 263 1-265 88-503 (1052)
7 2v26_A Myosin VI; calmodulin-b 100.0 4.9E-96 2E-100 748.2 26.3 263 1-265 84-499 (784)
8 2dfs_A Myosin-5A; myosin-V, in 100.0 7E-96 2E-100 769.0 24.9 266 1-266 101-485 (1080)
9 1g8x_A Myosin II heavy chain f 100.0 4.9E-95 1.7E-99 757.7 27.7 264 1-265 117-501 (1010)
10 2ycu_A Non muscle myosin 2C, a 100.0 1.5E-95 5E-100 761.6 23.2 265 1-265 91-480 (995)
11 1i84_S Smooth muscle myosin he 100.0 1.1E-94 3.7E-99 768.5 25.4 264 1-266 114-512 (1184)
12 1jbk_A CLPB protein; beta barr 96.5 0.0016 5.5E-08 52.4 3.4 33 50-82 37-69 (195)
13 2p65_A Hypothetical protein PF 96.3 0.0071 2.4E-07 48.6 6.4 63 18-82 7-69 (187)
14 3ec2_A DNA replication protein 96.3 0.0038 1.3E-07 51.2 4.7 28 55-82 37-64 (180)
15 4eun_A Thermoresistant glucoki 96.1 0.0038 1.3E-07 52.4 3.8 32 49-80 22-53 (200)
16 3uie_A Adenylyl-sulfate kinase 96.0 0.006 2.1E-07 51.1 4.7 30 52-81 21-50 (200)
17 3bos_A Putative DNA replicatio 96.0 0.0097 3.3E-07 50.0 5.8 38 45-82 41-78 (242)
18 1qhx_A CPT, protein (chloramph 95.8 0.0052 1.8E-07 49.9 3.4 25 56-80 3-27 (178)
19 3c8u_A Fructokinase; YP_612366 95.8 0.0094 3.2E-07 50.3 5.1 29 54-82 20-48 (208)
20 1ex7_A Guanylate kinase; subst 95.8 0.0046 1.6E-07 52.4 3.0 24 58-81 3-26 (186)
21 1kgd_A CASK, peripheral plasma 95.8 0.0053 1.8E-07 50.7 3.3 27 55-81 4-30 (180)
22 2w58_A DNAI, primosome compone 95.7 0.011 3.7E-07 49.2 5.0 26 57-82 55-80 (202)
23 1zp6_A Hypothetical protein AT 95.7 0.0057 1.9E-07 50.3 3.1 30 50-79 3-32 (191)
24 3a00_A Guanylate kinase, GMP k 95.7 0.0056 1.9E-07 50.8 3.0 25 57-81 2-26 (186)
25 1lvg_A Guanylate kinase, GMP k 95.6 0.0072 2.5E-07 50.9 3.3 26 56-81 4-29 (198)
26 1zuh_A Shikimate kinase; alpha 95.5 0.0096 3.3E-07 48.1 3.6 26 56-81 7-32 (168)
27 3tr0_A Guanylate kinase, GMP k 95.4 0.0096 3.3E-07 49.4 3.5 26 55-80 6-31 (205)
28 3kb2_A SPBC2 prophage-derived 95.4 0.0097 3.3E-07 47.7 3.4 24 58-81 3-26 (173)
29 2eyu_A Twitching motility prot 95.4 0.016 5.4E-07 51.4 5.1 37 46-83 16-52 (261)
30 2chg_A Replication factor C sm 95.4 0.02 6.9E-07 46.9 5.3 36 46-81 28-63 (226)
31 3iij_A Coilin-interacting nucl 95.3 0.012 4E-07 48.1 3.7 26 55-80 10-35 (180)
32 3vaa_A Shikimate kinase, SK; s 95.3 0.012 4.1E-07 49.2 3.8 26 55-80 24-49 (199)
33 3tau_A Guanylate kinase, GMP k 95.3 0.0089 3E-07 50.6 3.0 28 54-81 6-33 (208)
34 3t61_A Gluconokinase; PSI-biol 95.3 0.011 3.6E-07 49.4 3.4 26 56-81 18-43 (202)
35 2kjq_A DNAA-related protein; s 95.3 0.016 5.4E-07 46.9 4.3 28 55-82 35-62 (149)
36 2qor_A Guanylate kinase; phosp 95.2 0.0098 3.3E-07 50.0 3.0 27 55-81 11-37 (204)
37 1kht_A Adenylate kinase; phosp 95.2 0.012 3.9E-07 48.1 3.3 26 56-81 3-28 (192)
38 2j41_A Guanylate kinase; GMP, 95.2 0.0097 3.3E-07 49.3 2.9 26 55-80 5-30 (207)
39 1njg_A DNA polymerase III subu 95.2 0.029 1E-06 46.4 5.9 30 53-82 42-71 (250)
40 1knq_A Gluconate kinase; ALFA/ 95.1 0.016 5.4E-07 47.0 4.0 26 55-80 7-32 (175)
41 1znw_A Guanylate kinase, GMP k 95.1 0.013 4.5E-07 49.3 3.4 28 54-81 18-45 (207)
42 2rhm_A Putative kinase; P-loop 95.1 0.014 4.9E-07 47.7 3.6 26 56-81 5-30 (193)
43 1m7g_A Adenylylsulfate kinase; 95.1 0.022 7.4E-07 48.0 4.7 31 51-81 20-50 (211)
44 1l8q_A Chromosomal replication 94.9 0.029 1E-06 50.3 5.5 45 37-83 18-64 (324)
45 2pez_A Bifunctional 3'-phospho 94.9 0.018 6.3E-07 47.0 3.8 27 55-81 4-30 (179)
46 1nks_A Adenylate kinase; therm 94.9 0.014 4.7E-07 47.6 3.0 24 58-81 3-26 (194)
47 2bbw_A Adenylate kinase 4, AK4 94.9 0.018 6.2E-07 49.7 3.8 26 56-81 27-52 (246)
48 3asz_A Uridine kinase; cytidin 94.8 0.017 5.9E-07 48.3 3.5 28 54-81 4-31 (211)
49 3ney_A 55 kDa erythrocyte memb 94.8 0.016 5.6E-07 49.5 3.4 27 55-81 18-44 (197)
50 1s96_A Guanylate kinase, GMP k 94.8 0.016 5.6E-07 50.0 3.4 27 55-81 15-41 (219)
51 1ofh_A ATP-dependent HSL prote 94.8 0.051 1.7E-06 47.6 6.7 27 54-80 48-74 (310)
52 1z6g_A Guanylate kinase; struc 94.8 0.015 5.2E-07 49.7 3.1 26 55-80 22-47 (218)
53 3trf_A Shikimate kinase, SK; a 94.8 0.02 7E-07 46.7 3.8 25 56-80 5-29 (185)
54 3lw7_A Adenylate kinase relate 94.8 0.015 5.1E-07 46.2 2.9 22 58-80 3-24 (179)
55 1kag_A SKI, shikimate kinase I 94.8 0.016 5.6E-07 46.7 3.0 25 57-81 5-29 (173)
56 2yvu_A Probable adenylyl-sulfa 94.7 0.02 6.9E-07 47.0 3.6 28 55-82 12-39 (186)
57 1ye8_A Protein THEP1, hypothet 94.7 0.021 7.3E-07 47.5 3.6 23 58-80 2-24 (178)
58 1iqp_A RFCS; clamp loader, ext 94.7 0.073 2.5E-06 46.9 7.4 57 23-81 15-71 (327)
59 1odf_A YGR205W, hypothetical 3 94.7 0.04 1.4E-06 49.6 5.6 30 53-82 28-57 (290)
60 3cr8_A Sulfate adenylyltranfer 94.7 0.023 7.9E-07 55.9 4.4 29 54-82 367-395 (552)
61 1sxj_C Activator 1 40 kDa subu 94.6 0.054 1.8E-06 49.0 6.5 57 23-81 15-71 (340)
62 1e6c_A Shikimate kinase; phosp 94.6 0.022 7.5E-07 45.8 3.4 24 58-81 4-27 (173)
63 1gvn_B Zeta; postsegregational 94.6 0.021 7.2E-07 51.1 3.6 26 55-80 32-57 (287)
64 1htw_A HI0065; nucleotide-bind 94.5 0.025 8.5E-07 46.4 3.7 27 54-80 31-57 (158)
65 2gks_A Bifunctional SAT/APS ki 94.5 0.04 1.4E-06 54.0 5.8 50 33-82 345-398 (546)
66 2jaq_A Deoxyguanosine kinase; 94.5 0.022 7.5E-07 46.9 3.3 24 58-81 2-25 (205)
67 1ly1_A Polynucleotide kinase; 94.5 0.023 7.8E-07 45.8 3.4 22 57-78 3-24 (181)
68 2bdt_A BH3686; alpha-beta prot 94.5 0.022 7.4E-07 46.9 3.3 23 57-79 3-25 (189)
69 2pt5_A Shikimate kinase, SK; a 94.5 0.024 8.1E-07 45.5 3.4 24 58-81 2-25 (168)
70 1rz3_A Hypothetical protein rb 94.5 0.025 8.5E-07 47.4 3.6 29 54-82 20-48 (201)
71 2f1r_A Molybdopterin-guanine d 94.5 0.011 3.7E-07 49.3 1.3 27 57-83 3-29 (171)
72 2qby_B CDC6 homolog 3, cell di 94.5 0.037 1.3E-06 50.2 5.0 38 45-82 34-71 (384)
73 1cke_A CK, MSSA, protein (cyti 94.4 0.027 9.2E-07 47.5 3.8 25 56-80 5-29 (227)
74 1gtv_A TMK, thymidylate kinase 94.4 0.01 3.4E-07 49.6 1.0 25 58-82 2-26 (214)
75 3n70_A Transport activator; si 94.4 0.023 7.7E-07 45.2 3.1 26 54-79 22-47 (145)
76 3cm0_A Adenylate kinase; ATP-b 94.4 0.025 8.6E-07 46.1 3.4 25 56-80 4-28 (186)
77 1sxj_E Activator 1 40 kDa subu 94.4 0.024 8.1E-07 51.2 3.6 54 26-81 7-61 (354)
78 2iyv_A Shikimate kinase, SK; t 94.4 0.025 8.7E-07 46.2 3.4 24 58-81 4-27 (184)
79 1d2n_A N-ethylmaleimide-sensit 94.4 0.045 1.5E-06 47.8 5.2 28 53-80 61-88 (272)
80 1fnn_A CDC6P, cell division co 94.4 0.046 1.6E-06 49.5 5.4 37 46-82 32-70 (389)
81 1via_A Shikimate kinase; struc 94.4 0.026 8.7E-07 45.9 3.3 23 58-80 6-28 (175)
82 1np6_A Molybdopterin-guanine d 94.4 0.032 1.1E-06 46.6 3.9 27 57-83 7-33 (174)
83 1p9r_A General secretion pathw 94.4 0.042 1.4E-06 52.1 5.3 37 45-82 157-193 (418)
84 1zd8_A GTP:AMP phosphotransfer 94.3 0.021 7.2E-07 48.6 2.9 26 55-80 6-31 (227)
85 3aez_A Pantothenate kinase; tr 94.2 0.041 1.4E-06 50.0 4.8 30 53-82 87-116 (312)
86 3jvv_A Twitching mobility prot 94.2 0.038 1.3E-06 51.3 4.6 37 46-83 114-150 (356)
87 4gp7_A Metallophosphoesterase; 94.2 0.035 1.2E-06 45.4 3.9 21 55-75 8-28 (171)
88 2z0h_A DTMP kinase, thymidylat 94.2 0.029 1E-06 46.0 3.4 25 58-82 2-26 (197)
89 3te6_A Regulatory protein SIR3 94.2 0.042 1.4E-06 50.4 4.6 38 45-82 34-71 (318)
90 1qf9_A UMP/CMP kinase, protein 94.2 0.026 9E-07 45.8 3.0 26 56-81 6-31 (194)
91 1sq5_A Pantothenate kinase; P- 94.1 0.051 1.7E-06 49.0 5.1 28 54-81 78-105 (308)
92 2pbr_A DTMP kinase, thymidylat 94.1 0.031 1.1E-06 45.6 3.4 24 58-81 2-25 (195)
93 2plr_A DTMP kinase, probable t 94.1 0.031 1E-06 46.3 3.4 27 56-82 4-30 (213)
94 3pvs_A Replication-associated 94.1 0.049 1.7E-06 52.0 5.2 58 24-81 17-75 (447)
95 3fb4_A Adenylate kinase; psych 94.1 0.031 1.1E-06 46.8 3.4 22 59-80 3-24 (216)
96 2c95_A Adenylate kinase 1; tra 94.1 0.036 1.2E-06 45.4 3.6 26 55-80 8-33 (196)
97 1tev_A UMP-CMP kinase; ploop, 94.0 0.038 1.3E-06 45.0 3.7 25 56-80 3-27 (196)
98 1jr3_A DNA polymerase III subu 94.0 0.12 4E-06 46.6 7.3 57 24-82 7-64 (373)
99 2bwj_A Adenylate kinase 5; pho 94.0 0.029 1E-06 46.0 3.0 26 56-81 12-37 (199)
100 3u61_B DNA polymerase accessor 94.0 0.12 4.3E-06 45.9 7.4 56 23-80 16-72 (324)
101 2vli_A Antibiotic resistance p 94.0 0.026 9E-07 45.8 2.6 26 56-81 5-30 (183)
102 1xjc_A MOBB protein homolog; s 94.0 0.037 1.3E-06 46.1 3.6 27 57-83 5-31 (169)
103 2cdn_A Adenylate kinase; phosp 94.0 0.042 1.4E-06 45.6 3.9 29 53-81 17-45 (201)
104 2qz4_A Paraplegin; AAA+, SPG7, 93.9 0.043 1.5E-06 47.1 4.0 28 54-81 37-64 (262)
105 2p5t_B PEZT; postsegregational 93.9 0.028 9.6E-07 49.0 2.8 28 54-81 30-57 (253)
106 2ewv_A Twitching motility prot 93.9 0.04 1.4E-06 51.3 4.0 31 53-83 133-163 (372)
107 1sxj_D Activator 1 41 kDa subu 93.9 0.089 3.1E-06 47.0 6.2 56 24-81 28-83 (353)
108 2v1u_A Cell division control p 93.8 0.027 9.3E-07 50.8 2.6 30 53-82 41-70 (387)
109 1lv7_A FTSH; alpha/beta domain 93.8 0.041 1.4E-06 47.5 3.7 26 55-80 44-69 (257)
110 3syl_A Protein CBBX; photosynt 93.7 0.07 2.4E-06 47.0 5.2 29 54-82 65-93 (309)
111 2wwf_A Thymidilate kinase, put 93.7 0.042 1.4E-06 45.6 3.5 27 56-82 10-36 (212)
112 3dl0_A Adenylate kinase; phosp 93.7 0.034 1.1E-06 46.7 2.9 22 59-80 3-24 (216)
113 3tqf_A HPR(Ser) kinase; transf 93.7 0.036 1.2E-06 46.9 3.0 25 55-79 15-39 (181)
114 1uf9_A TT1252 protein; P-loop, 93.7 0.039 1.3E-06 45.4 3.3 25 55-79 7-31 (203)
115 4e22_A Cytidylate kinase; P-lo 93.7 0.043 1.5E-06 47.9 3.7 27 55-81 26-52 (252)
116 1svm_A Large T antigen; AAA+ f 93.7 0.094 3.2E-06 49.1 6.2 47 34-80 146-193 (377)
117 3lnc_A Guanylate kinase, GMP k 93.7 0.026 9E-07 48.1 2.2 26 55-80 26-52 (231)
118 1nn5_A Similar to deoxythymidy 93.7 0.045 1.5E-06 45.5 3.7 28 55-82 8-35 (215)
119 2qby_A CDC6 homolog 1, cell di 93.7 0.028 9.6E-07 50.6 2.5 30 53-82 42-71 (386)
120 3tlx_A Adenylate kinase 2; str 93.7 0.096 3.3E-06 45.4 5.8 27 54-80 27-53 (243)
121 1m8p_A Sulfate adenylyltransfe 93.6 0.061 2.1E-06 53.1 5.0 48 34-82 370-422 (573)
122 3e70_C DPA, signal recognition 93.6 0.059 2E-06 49.4 4.6 32 54-85 127-158 (328)
123 3ake_A Cytidylate kinase; CMP 93.6 0.043 1.5E-06 45.3 3.4 23 58-80 4-26 (208)
124 1zak_A Adenylate kinase; ATP:A 93.6 0.037 1.3E-06 46.8 3.0 26 56-81 5-30 (222)
125 2v9p_A Replication protein E1; 93.6 0.051 1.7E-06 49.5 4.0 35 46-80 115-150 (305)
126 2jeo_A Uridine-cytidine kinase 93.6 0.054 1.8E-06 46.8 4.0 28 54-81 23-50 (245)
127 2ehv_A Hypothetical protein PH 93.6 0.043 1.5E-06 46.5 3.4 27 55-81 29-55 (251)
128 2qt1_A Nicotinamide riboside k 93.5 0.029 9.8E-07 46.9 2.1 26 55-80 20-45 (207)
129 2z4s_A Chromosomal replication 93.5 0.085 2.9E-06 50.0 5.6 41 43-83 116-157 (440)
130 1y63_A LMAJ004144AAA protein; 93.5 0.057 1.9E-06 44.5 3.9 25 55-79 9-33 (184)
131 2bjv_A PSP operon transcriptio 93.5 0.069 2.3E-06 46.3 4.6 27 55-81 28-54 (265)
132 1ukz_A Uridylate kinase; trans 93.5 0.05 1.7E-06 45.1 3.6 26 55-80 14-39 (203)
133 4a74_A DNA repair and recombin 93.5 0.041 1.4E-06 46.1 3.0 27 55-81 24-50 (231)
134 2chq_A Replication factor C sm 93.4 0.064 2.2E-06 47.1 4.4 36 46-81 28-63 (319)
135 3tif_A Uncharacterized ABC tra 93.4 0.046 1.6E-06 47.5 3.4 27 54-80 29-55 (235)
136 1rj9_A FTSY, signal recognitio 93.4 0.066 2.2E-06 48.5 4.5 29 55-83 101-129 (304)
137 2gza_A Type IV secretion syste 93.4 0.025 8.6E-07 52.4 1.7 27 55-81 174-200 (361)
138 2w0m_A SSO2452; RECA, SSPF, un 93.4 0.062 2.1E-06 44.8 4.0 29 55-83 22-50 (235)
139 2vp4_A Deoxynucleoside kinase; 93.4 0.032 1.1E-06 47.8 2.2 26 54-79 18-43 (230)
140 3nwj_A ATSK2; P loop, shikimat 93.3 0.052 1.8E-06 47.9 3.6 25 56-80 48-72 (250)
141 3d8b_A Fidgetin-like protein 1 93.3 0.22 7.4E-06 45.6 7.9 27 54-80 115-141 (357)
142 3uk6_A RUVB-like 2; hexameric 93.3 0.088 3E-06 47.6 5.2 26 56-81 70-95 (368)
143 4fcw_A Chaperone protein CLPB; 93.3 0.062 2.1E-06 47.4 4.0 26 56-81 47-72 (311)
144 2i3b_A HCR-ntpase, human cance 93.3 0.051 1.8E-06 45.7 3.3 25 57-81 2-26 (189)
145 3b9p_A CG5977-PA, isoform A; A 93.3 0.058 2E-06 47.4 3.8 27 55-81 53-79 (297)
146 1g8f_A Sulfate adenylyltransfe 93.3 0.04 1.4E-06 53.8 2.9 46 35-82 376-421 (511)
147 3co5_A Putative two-component 93.3 0.023 7.9E-07 45.1 1.1 26 54-79 25-50 (143)
148 3b9q_A Chloroplast SRP recepto 93.3 0.073 2.5E-06 48.2 4.5 47 38-84 71-128 (302)
149 3a4m_A L-seryl-tRNA(SEC) kinas 93.3 0.057 2E-06 47.2 3.7 26 57-82 5-30 (260)
150 2ze6_A Isopentenyl transferase 93.2 0.052 1.8E-06 47.5 3.4 24 58-81 3-26 (253)
151 3h4m_A Proteasome-activating n 93.2 0.093 3.2E-06 45.8 5.0 27 54-80 49-75 (285)
152 2v54_A DTMP kinase, thymidylat 93.2 0.049 1.7E-06 44.9 3.0 25 56-80 4-28 (204)
153 1e4v_A Adenylate kinase; trans 93.1 0.051 1.7E-06 45.7 3.0 23 58-80 2-24 (214)
154 1aky_A Adenylate kinase; ATP:A 93.1 0.069 2.3E-06 45.0 3.9 26 56-81 4-29 (220)
155 1ixz_A ATP-dependent metallopr 93.1 0.057 2E-06 46.5 3.4 25 56-80 49-73 (254)
156 2if2_A Dephospho-COA kinase; a 92.8 0.049 1.7E-06 45.2 2.5 21 58-78 3-23 (204)
157 2xb4_A Adenylate kinase; ATP-b 92.8 0.065 2.2E-06 45.6 3.3 24 58-81 2-25 (223)
158 1nij_A Hypothetical protein YJ 92.7 0.054 1.9E-06 49.0 2.8 24 57-80 5-28 (318)
159 3cf0_A Transitional endoplasmi 92.6 0.08 2.7E-06 47.3 3.7 27 54-80 47-73 (301)
160 1sxj_B Activator 1 37 kDa subu 92.6 0.14 4.9E-06 44.9 5.3 35 47-81 33-67 (323)
161 3pfi_A Holliday junction ATP-d 92.5 0.13 4.6E-06 45.9 5.2 27 54-80 53-79 (338)
162 1jjv_A Dephospho-COA kinase; P 92.5 0.06 2.1E-06 44.8 2.7 21 58-78 4-24 (206)
163 1vht_A Dephospho-COA kinase; s 92.5 0.067 2.3E-06 45.0 3.0 22 57-78 5-26 (218)
164 1hqc_A RUVB; extended AAA-ATPa 92.5 0.12 4.2E-06 45.7 4.9 28 54-81 36-63 (324)
165 3b85_A Phosphate starvation-in 92.5 0.074 2.5E-06 45.4 3.2 40 36-79 6-45 (208)
166 2cbz_A Multidrug resistance-as 92.5 0.076 2.6E-06 46.1 3.4 27 54-80 29-55 (237)
167 2onk_A Molybdate/tungstate ABC 92.5 0.078 2.7E-06 46.3 3.4 26 54-80 23-48 (240)
168 2og2_A Putative signal recogni 92.4 0.11 3.7E-06 48.3 4.5 46 38-83 128-184 (359)
169 2ff7_A Alpha-hemolysin translo 92.4 0.075 2.6E-06 46.5 3.2 27 55-81 34-60 (247)
170 3tqc_A Pantothenate kinase; bi 92.4 0.11 3.7E-06 47.6 4.4 25 58-82 94-118 (321)
171 2d2e_A SUFC protein; ABC-ATPas 92.4 0.08 2.7E-06 46.3 3.4 25 55-79 28-52 (250)
172 1in4_A RUVB, holliday junction 92.3 0.17 5.9E-06 45.8 5.7 27 54-80 49-75 (334)
173 1mv5_A LMRA, multidrug resista 92.3 0.081 2.8E-06 46.1 3.3 28 54-81 26-53 (243)
174 1a7j_A Phosphoribulokinase; tr 92.3 0.053 1.8E-06 48.7 2.1 26 56-81 5-30 (290)
175 1g8p_A Magnesium-chelatase 38 92.3 0.079 2.7E-06 47.4 3.3 27 55-81 44-70 (350)
176 2ghi_A Transport protein; mult 92.3 0.083 2.8E-06 46.6 3.4 28 54-81 44-71 (260)
177 2r62_A Cell division protease 92.2 0.055 1.9E-06 46.8 2.2 27 55-81 43-69 (268)
178 4eaq_A DTMP kinase, thymidylat 92.2 0.11 3.7E-06 44.8 4.0 28 55-82 25-52 (229)
179 1b0u_A Histidine permease; ABC 92.2 0.084 2.9E-06 46.6 3.3 27 54-80 30-56 (262)
180 1iy2_A ATP-dependent metallopr 92.2 0.087 3E-06 46.2 3.4 25 56-80 73-97 (278)
181 2zu0_C Probable ATP-dependent 92.2 0.09 3.1E-06 46.6 3.5 26 54-79 44-69 (267)
182 1vma_A Cell division protein F 92.1 0.13 4.3E-06 46.7 4.5 46 39-84 79-132 (306)
183 1a5t_A Delta prime, HOLB; zinc 92.1 0.21 7.2E-06 45.2 6.0 31 52-82 20-50 (334)
184 2pcj_A ABC transporter, lipopr 92.1 0.074 2.5E-06 45.8 2.8 25 55-79 29-53 (224)
185 3llm_A ATP-dependent RNA helic 92.1 0.15 5.1E-06 43.6 4.7 36 39-77 62-97 (235)
186 3r20_A Cytidylate kinase; stru 92.1 0.092 3.2E-06 45.9 3.4 26 56-81 9-34 (233)
187 1ojl_A Transcriptional regulat 92.0 0.13 4.3E-06 46.3 4.4 27 54-80 23-49 (304)
188 4g1u_C Hemin import ATP-bindin 92.0 0.085 2.9E-06 46.8 3.2 28 54-81 35-62 (266)
189 2ixe_A Antigen peptide transpo 92.0 0.081 2.8E-06 47.0 3.0 28 54-81 43-70 (271)
190 2oap_1 GSPE-2, type II secreti 92.0 0.046 1.6E-06 53.2 1.5 26 55-80 259-284 (511)
191 2yhs_A FTSY, cell division pro 92.0 0.13 4.3E-06 50.1 4.6 47 38-84 266-321 (503)
192 3gfo_A Cobalt import ATP-bindi 92.0 0.087 3E-06 47.1 3.2 27 54-80 32-58 (275)
193 1g6h_A High-affinity branched- 92.0 0.09 3.1E-06 46.2 3.2 26 55-80 32-57 (257)
194 2olj_A Amino acid ABC transpor 92.0 0.093 3.2E-06 46.5 3.3 27 54-80 48-74 (263)
195 3hws_A ATP-dependent CLP prote 92.0 0.13 4.5E-06 46.9 4.5 26 55-80 50-75 (363)
196 2qgz_A Helicase loader, putati 91.9 0.21 7.1E-06 45.0 5.7 26 56-81 152-177 (308)
197 1uj2_A Uridine-cytidine kinase 91.9 0.1 3.5E-06 45.2 3.5 27 55-81 21-47 (252)
198 1r6b_X CLPA protein; AAA+, N-t 91.9 0.28 9.7E-06 49.3 7.2 65 16-82 169-233 (758)
199 1ak2_A Adenylate kinase isoenz 91.9 0.13 4.3E-06 44.0 4.0 27 55-81 15-41 (233)
200 3be4_A Adenylate kinase; malar 91.9 0.089 3.1E-06 44.4 3.0 24 57-80 6-29 (217)
201 2hf9_A Probable hydrogenase ni 91.9 0.18 6.2E-06 42.1 4.9 35 47-81 29-63 (226)
202 2cvh_A DNA repair and recombin 91.8 0.11 3.8E-06 43.1 3.5 25 54-78 18-42 (220)
203 2pze_A Cystic fibrosis transme 91.8 0.084 2.9E-06 45.6 2.8 27 54-80 32-58 (229)
204 1sgw_A Putative ABC transporte 91.8 0.087 3E-06 45.3 2.9 26 55-80 34-59 (214)
205 4edh_A DTMP kinase, thymidylat 91.8 0.11 3.6E-06 44.6 3.4 27 56-82 6-32 (213)
206 2yz2_A Putative ABC transporte 91.8 0.1 3.5E-06 46.1 3.4 27 54-80 31-57 (266)
207 1w5s_A Origin recognition comp 91.7 0.16 5.6E-06 46.2 4.8 29 54-82 48-78 (412)
208 3upu_A ATP-dependent DNA helic 91.7 0.24 8.3E-06 46.9 6.1 29 57-85 46-74 (459)
209 1sxj_A Activator 1 95 kDa subu 91.7 0.13 4.5E-06 49.6 4.3 26 55-80 76-101 (516)
210 1ltq_A Polynucleotide kinase; 91.7 0.11 3.7E-06 45.9 3.4 23 57-79 3-25 (301)
211 1vpl_A ABC transporter, ATP-bi 91.6 0.11 3.7E-06 45.9 3.3 27 54-80 39-65 (256)
212 1um8_A ATP-dependent CLP prote 91.6 0.11 3.7E-06 47.7 3.4 26 55-80 71-96 (376)
213 1ji0_A ABC transporter; ATP bi 91.5 0.11 3.7E-06 45.2 3.2 26 55-80 31-56 (240)
214 1cr0_A DNA primase/helicase; R 91.5 0.13 4.5E-06 45.4 3.8 31 53-83 32-62 (296)
215 3t15_A Ribulose bisphosphate c 91.4 0.12 4.2E-06 46.0 3.6 27 54-80 34-60 (293)
216 3sr0_A Adenylate kinase; phosp 91.4 0.12 4.3E-06 44.0 3.4 23 59-81 3-25 (206)
217 3sop_A Neuronal-specific septi 91.4 0.11 3.9E-06 46.0 3.2 25 58-82 4-28 (270)
218 1zu4_A FTSY; GTPase, signal re 91.3 0.18 6.1E-06 45.9 4.6 30 55-84 104-133 (320)
219 2ga8_A Hypothetical 39.9 kDa p 91.3 0.27 9.4E-06 45.8 5.9 41 41-81 6-49 (359)
220 2px0_A Flagellar biosynthesis 91.3 0.14 4.8E-06 46.1 3.8 46 37-82 79-131 (296)
221 1n0w_A DNA repair protein RAD5 91.3 0.13 4.4E-06 43.4 3.4 25 55-79 23-47 (243)
222 2pt7_A CAG-ALFA; ATPase, prote 91.3 0.05 1.7E-06 49.8 0.8 27 55-81 170-196 (330)
223 2wsm_A Hydrogenase expression/ 91.2 0.19 6.5E-06 41.8 4.3 32 50-81 24-55 (221)
224 3pxg_A Negative regulator of g 91.2 0.36 1.2E-05 46.0 6.8 33 49-81 194-226 (468)
225 1q3t_A Cytidylate kinase; nucl 91.2 0.17 5.8E-06 43.2 4.1 27 54-80 14-40 (236)
226 2nq2_C Hypothetical ABC transp 91.2 0.12 4.2E-06 45.4 3.2 26 55-80 30-55 (253)
227 3v9p_A DTMP kinase, thymidylat 91.1 0.11 3.8E-06 45.1 2.9 29 55-83 24-52 (227)
228 3rlf_A Maltose/maltodextrin im 91.1 0.13 4.5E-06 48.2 3.5 28 54-81 27-54 (381)
229 3eie_A Vacuolar protein sortin 91.1 0.16 5.6E-06 45.6 4.0 26 55-80 50-75 (322)
230 3nh6_A ATP-binding cassette SU 91.0 0.051 1.8E-06 49.4 0.6 29 54-82 78-106 (306)
231 2qi9_C Vitamin B12 import ATP- 91.0 0.13 4.4E-06 45.2 3.2 27 55-81 25-51 (249)
232 3foz_A TRNA delta(2)-isopenten 91.0 0.14 4.8E-06 46.9 3.5 32 50-81 4-35 (316)
233 2ihy_A ABC transporter, ATP-bi 91.0 0.13 4.4E-06 46.0 3.2 27 55-81 46-72 (279)
234 1ko7_A HPR kinase/phosphatase; 90.9 0.12 4E-06 47.4 2.9 24 56-79 144-167 (314)
235 2grj_A Dephospho-COA kinase; T 90.9 0.15 5.2E-06 42.9 3.4 53 55-108 11-65 (192)
236 2h92_A Cytidylate kinase; ross 90.8 0.14 4.7E-06 42.9 3.1 25 56-80 3-27 (219)
237 3kta_A Chromosome segregation 90.8 0.14 4.8E-06 41.5 3.1 25 57-81 27-51 (182)
238 4tmk_A Protein (thymidylate ki 90.7 0.15 5.2E-06 43.7 3.3 26 57-82 4-29 (213)
239 1knx_A Probable HPR(Ser) kinas 90.7 0.11 3.8E-06 47.5 2.5 24 55-78 146-169 (312)
240 2qmh_A HPR kinase/phosphorylas 90.6 0.14 4.8E-06 44.1 3.0 27 55-81 33-59 (205)
241 2dr3_A UPF0273 protein PH0284; 90.6 0.18 6.1E-06 42.5 3.6 29 55-83 22-50 (247)
242 1lw7_A Transcriptional regulat 90.6 0.12 4E-06 47.5 2.7 27 56-82 170-196 (365)
243 3lv8_A DTMP kinase, thymidylat 90.6 0.16 5.4E-06 44.4 3.3 28 55-82 26-53 (236)
244 3zvl_A Bifunctional polynucleo 90.5 0.11 3.9E-06 48.8 2.5 27 54-80 256-282 (416)
245 3ld9_A DTMP kinase, thymidylat 90.5 0.21 7.1E-06 43.3 4.0 30 53-82 18-47 (223)
246 2ocp_A DGK, deoxyguanosine kin 90.5 0.14 4.9E-06 43.8 2.9 26 56-81 2-27 (241)
247 1xwi_A SKD1 protein; VPS4B, AA 90.4 0.18 6.2E-06 45.6 3.7 26 55-80 44-69 (322)
248 2pjz_A Hypothetical protein ST 90.4 0.14 4.9E-06 45.3 2.9 25 56-80 30-54 (263)
249 3fvq_A Fe(3+) IONS import ATP- 90.3 0.15 5.2E-06 47.4 3.2 27 54-80 28-54 (359)
250 3umf_A Adenylate kinase; rossm 90.3 0.22 7.6E-06 42.9 4.0 28 54-81 27-54 (217)
251 3m6a_A ATP-dependent protease 90.3 0.23 7.9E-06 48.4 4.6 29 53-81 105-133 (543)
252 2yyz_A Sugar ABC transporter, 90.2 0.18 6.2E-06 46.8 3.5 27 54-80 27-53 (359)
253 3tui_C Methionine import ATP-b 90.1 0.18 6.3E-06 47.0 3.5 27 54-80 52-78 (366)
254 2bbs_A Cystic fibrosis transme 90.1 0.14 4.9E-06 46.0 2.6 27 54-80 62-88 (290)
255 2it1_A 362AA long hypothetical 90.0 0.19 6.4E-06 46.8 3.5 27 54-80 27-53 (362)
256 3d3q_A TRNA delta(2)-isopenten 90.0 0.17 5.6E-06 46.9 3.1 25 57-81 8-32 (340)
257 2qp9_X Vacuolar protein sortin 90.0 0.21 7E-06 45.8 3.7 27 55-81 83-109 (355)
258 2x8a_A Nuclear valosin-contain 90.0 0.17 5.8E-06 44.8 3.1 25 56-80 44-68 (274)
259 3tmk_A Thymidylate kinase; pho 89.9 0.17 5.9E-06 43.5 3.0 27 56-82 5-31 (216)
260 1z47_A CYSA, putative ABC-tran 89.9 0.19 6.3E-06 46.7 3.4 26 55-80 40-65 (355)
261 2obl_A ESCN; ATPase, hydrolase 89.9 0.18 6.2E-06 46.5 3.3 43 39-81 54-96 (347)
262 1nlf_A Regulatory protein REPA 89.8 0.22 7.4E-06 43.7 3.6 27 55-81 29-55 (279)
263 1v43_A Sugar-binding transport 89.7 0.2 6.9E-06 46.7 3.5 27 54-80 35-61 (372)
264 2yv5_A YJEQ protein; hydrolase 89.6 0.28 9.7E-06 44.0 4.3 29 49-77 158-186 (302)
265 2dpy_A FLII, flagellum-specifi 89.5 0.21 7.3E-06 47.5 3.6 38 44-81 145-182 (438)
266 1g29_1 MALK, maltose transport 89.5 0.21 7.1E-06 46.6 3.4 26 55-80 28-53 (372)
267 2f6r_A COA synthase, bifunctio 89.5 0.18 6.3E-06 44.7 2.9 24 55-78 74-97 (281)
268 1x6v_B Bifunctional 3'-phospho 89.3 0.34 1.2E-05 48.3 5.0 27 55-81 51-77 (630)
269 3vfd_A Spastin; ATPase, microt 89.2 0.26 9E-06 45.4 3.8 26 55-80 147-172 (389)
270 1ls1_A Signal recognition part 89.1 0.34 1.2E-05 43.4 4.5 30 55-84 97-126 (295)
271 3gd7_A Fusion complex of cysti 89.1 0.21 7.3E-06 46.9 3.2 28 54-81 45-72 (390)
272 4ag6_A VIRB4 ATPase, type IV s 89.1 0.27 9.1E-06 45.4 3.8 28 55-82 34-61 (392)
273 3d31_A Sulfate/molybdate ABC t 88.9 0.17 5.7E-06 46.9 2.2 27 54-80 24-50 (348)
274 3ice_A Transcription terminati 88.9 0.55 1.9E-05 44.6 5.8 46 37-82 155-200 (422)
275 3kl4_A SRP54, signal recogniti 88.8 0.57 2E-05 44.6 6.0 29 56-84 97-125 (433)
276 2axn_A 6-phosphofructo-2-kinas 88.7 0.29 1E-05 47.5 4.0 27 55-81 34-60 (520)
277 2qen_A Walker-type ATPase; unk 88.6 0.41 1.4E-05 42.2 4.6 24 57-80 32-55 (350)
278 2qm8_A GTPase/ATPase; G protei 88.6 0.43 1.5E-05 43.6 4.8 39 44-82 42-81 (337)
279 1tue_A Replication protein E1; 88.6 0.24 8.2E-06 42.9 2.9 36 45-80 46-82 (212)
280 2xau_A PRE-mRNA-splicing facto 88.6 0.63 2.2E-05 47.4 6.4 59 10-76 71-129 (773)
281 2f9l_A RAB11B, member RAS onco 88.6 0.27 9.1E-06 40.3 3.1 21 58-78 7-27 (199)
282 3crm_A TRNA delta(2)-isopenten 88.5 0.23 7.8E-06 45.6 2.9 25 57-81 6-30 (323)
283 3exa_A TRNA delta(2)-isopenten 88.4 0.21 7.1E-06 45.9 2.5 25 57-81 4-28 (322)
284 3dm5_A SRP54, signal recogniti 88.2 0.58 2E-05 44.7 5.6 29 55-83 99-127 (443)
285 2npi_A Protein CLP1; CLP1-PCF1 88.2 0.23 7.9E-06 47.6 2.8 32 54-85 136-167 (460)
286 2fna_A Conserved hypothetical 88.2 0.53 1.8E-05 41.5 5.0 24 57-80 31-54 (357)
287 1oix_A RAS-related protein RAB 88.0 0.26 8.9E-06 40.4 2.7 21 58-78 31-51 (191)
288 3ch4_B Pmkase, phosphomevalona 88.0 0.29 9.8E-06 42.0 3.0 23 58-80 13-35 (202)
289 1bif_A 6-phosphofructo-2-kinas 87.9 0.35 1.2E-05 46.0 3.8 28 54-81 37-64 (469)
290 3pxi_A Negative regulator of g 87.9 0.51 1.8E-05 47.5 5.2 32 50-81 195-226 (758)
291 1oxx_K GLCV, glucose, ABC tran 87.8 0.17 5.9E-06 46.8 1.6 27 54-80 29-55 (353)
292 2c9o_A RUVB-like 1; hexameric 87.8 0.67 2.3E-05 43.8 5.7 26 56-81 63-88 (456)
293 1z2a_A RAS-related protein RAB 87.8 0.33 1.1E-05 37.8 3.1 20 58-77 7-26 (168)
294 3fdi_A Uncharacterized protein 87.7 0.28 9.4E-06 41.4 2.7 25 57-81 7-31 (201)
295 3b5x_A Lipid A export ATP-bind 87.7 0.24 8.3E-06 48.5 2.6 29 54-82 367-395 (582)
296 3hu3_A Transitional endoplasmi 87.6 0.33 1.1E-05 46.8 3.5 27 54-80 236-262 (489)
297 3k1j_A LON protease, ATP-depen 87.6 0.24 8.3E-06 48.7 2.6 26 56-81 60-85 (604)
298 3eph_A TRNA isopentenyltransfe 87.5 0.29 1E-05 46.3 3.0 24 58-81 4-27 (409)
299 2dyk_A GTP-binding protein; GT 87.1 0.39 1.3E-05 37.2 3.0 20 58-77 3-22 (161)
300 3euj_A Chromosome partition pr 87.0 0.43 1.5E-05 46.1 3.9 26 57-82 30-55 (483)
301 1j8m_F SRP54, signal recogniti 86.8 0.55 1.9E-05 42.2 4.3 29 56-84 98-126 (297)
302 2ffh_A Protein (FFH); SRP54, s 86.8 0.47 1.6E-05 45.0 4.0 30 55-84 97-126 (425)
303 1tf7_A KAIC; homohexamer, hexa 86.7 0.34 1.2E-05 46.8 3.0 36 46-81 27-65 (525)
304 2zej_A Dardarin, leucine-rich 86.7 0.31 1.1E-05 39.4 2.4 20 58-77 4-23 (184)
305 3b60_A Lipid A export ATP-bind 86.7 0.22 7.7E-06 48.7 1.8 28 54-81 367-394 (582)
306 2ce2_X GTPase HRAS; signaling 86.7 0.37 1.3E-05 37.2 2.7 20 58-77 5-24 (166)
307 1yqt_A RNAse L inhibitor; ATP- 86.7 0.4 1.4E-05 46.7 3.5 27 54-80 45-71 (538)
308 2zan_A Vacuolar protein sortin 86.7 0.41 1.4E-05 45.3 3.5 26 55-80 166-191 (444)
309 1u8z_A RAS-related protein RAL 86.6 0.43 1.5E-05 36.9 3.1 20 58-77 6-25 (168)
310 3hdt_A Putative kinase; struct 86.5 0.38 1.3E-05 41.5 3.0 26 56-81 14-39 (223)
311 1pzn_A RAD51, DNA repair and r 86.4 0.38 1.3E-05 44.2 3.0 26 55-80 130-155 (349)
312 1u0l_A Probable GTPase ENGC; p 86.4 0.45 1.5E-05 42.5 3.5 25 55-79 168-192 (301)
313 2yl4_A ATP-binding cassette SU 86.3 0.34 1.2E-05 47.6 2.8 28 54-81 368-395 (595)
314 1ry6_A Internal kinesin; kines 86.3 0.5 1.7E-05 43.9 3.8 36 38-73 66-102 (360)
315 2gno_A DNA polymerase III, gam 86.2 0.71 2.4E-05 41.6 4.7 34 46-79 8-41 (305)
316 2wji_A Ferrous iron transport 86.2 0.42 1.5E-05 37.8 2.9 20 58-77 5-24 (165)
317 3qf4_B Uncharacterized ABC tra 86.2 0.36 1.2E-05 47.5 2.9 28 54-81 379-406 (598)
318 3hjn_A DTMP kinase, thymidylat 86.1 0.56 1.9E-05 39.4 3.7 25 59-83 3-27 (197)
319 1ek0_A Protein (GTP-binding pr 86.1 0.46 1.6E-05 36.9 3.1 20 58-77 5-24 (170)
320 1m2o_B GTP-binding protein SAR 86.0 0.44 1.5E-05 38.9 2.9 24 54-77 21-44 (190)
321 1w36_D RECD, exodeoxyribonucle 86.0 0.76 2.6E-05 45.3 5.2 28 56-83 164-191 (608)
322 1kao_A RAP2A; GTP-binding prot 86.0 0.48 1.6E-05 36.6 3.0 20 58-77 5-24 (167)
323 1ky3_A GTP-binding protein YPT 85.9 0.48 1.6E-05 37.4 3.0 21 57-77 9-29 (182)
324 3e1s_A Exodeoxyribonuclease V, 85.8 0.79 2.7E-05 45.0 5.2 30 55-84 203-232 (574)
325 1c1y_A RAS-related protein RAP 85.8 0.49 1.7E-05 36.7 3.1 20 58-77 5-24 (167)
326 2wjg_A FEOB, ferrous iron tran 85.8 0.45 1.5E-05 38.1 2.9 21 57-77 8-28 (188)
327 1qvr_A CLPB protein; coiled co 85.8 0.56 1.9E-05 48.0 4.2 33 50-82 185-217 (854)
328 1u0j_A DNA replication protein 85.7 1 3.6E-05 40.1 5.5 38 43-80 89-128 (267)
329 3gbj_A KIF13B protein; kinesin 85.6 0.69 2.4E-05 42.8 4.4 22 52-73 89-110 (354)
330 2r44_A Uncharacterized protein 85.6 0.58 2E-05 41.7 3.8 24 57-80 47-70 (331)
331 1z08_A RAS-related protein RAB 85.6 0.5 1.7E-05 36.9 3.0 20 58-77 8-27 (170)
332 2rcn_A Probable GTPase ENGC; Y 85.5 0.53 1.8E-05 43.7 3.6 26 55-80 214-239 (358)
333 1z0j_A RAB-22, RAS-related pro 85.5 0.52 1.8E-05 36.7 3.0 20 58-77 8-27 (170)
334 2zts_A Putative uncharacterize 85.5 0.71 2.4E-05 38.7 4.1 25 55-79 29-53 (251)
335 3pxi_A Negative regulator of g 85.5 0.88 3E-05 45.8 5.4 24 58-81 523-546 (758)
336 3a8t_A Adenylate isopentenyltr 85.5 0.38 1.3E-05 44.5 2.5 27 55-81 39-65 (339)
337 2ce7_A Cell division protein F 85.4 0.61 2.1E-05 44.9 4.0 26 55-80 48-73 (476)
338 2ged_A SR-beta, signal recogni 85.3 0.52 1.8E-05 38.0 3.0 21 57-77 49-69 (193)
339 3j16_B RLI1P; ribosome recycli 85.2 0.51 1.8E-05 46.8 3.5 28 54-81 101-128 (608)
340 3dc4_A Kinesin-like protein NO 85.2 0.7 2.4E-05 42.7 4.2 22 52-73 91-112 (344)
341 1yrb_A ATP(GTP)binding protein 85.2 0.7 2.4E-05 39.4 4.0 28 54-81 12-39 (262)
342 3ozx_A RNAse L inhibitor; ATP 85.2 0.49 1.7E-05 46.2 3.3 28 54-81 23-50 (538)
343 1wms_A RAB-9, RAB9, RAS-relate 85.2 0.54 1.8E-05 37.0 3.0 20 58-77 9-28 (177)
344 1bg2_A Kinesin; motor protein, 85.1 0.74 2.5E-05 42.1 4.3 22 52-73 74-95 (325)
345 2fh5_B SR-beta, signal recogni 85.0 0.59 2E-05 38.4 3.3 24 54-77 5-28 (214)
346 2fn4_A P23, RAS-related protei 85.0 0.48 1.7E-05 37.3 2.7 22 57-78 10-31 (181)
347 1p5z_B DCK, deoxycytidine kina 85.0 0.21 7.2E-06 43.4 0.5 27 55-81 23-49 (263)
348 2erx_A GTP-binding protein DI- 85.0 0.53 1.8E-05 36.6 2.9 20 58-77 5-24 (172)
349 2qag_B Septin-6, protein NEDD5 84.9 0.52 1.8E-05 44.8 3.3 26 54-79 38-65 (427)
350 1qvr_A CLPB protein; coiled co 84.9 0.96 3.3E-05 46.3 5.5 25 57-81 589-613 (854)
351 3qf4_A ABC transporter, ATP-bi 84.9 0.23 7.8E-06 48.8 0.8 29 54-82 367-395 (587)
352 4hlc_A DTMP kinase, thymidylat 84.8 0.61 2.1E-05 39.5 3.3 25 57-81 3-27 (205)
353 3nwn_A Kinesin-like protein KI 84.7 0.69 2.4E-05 43.0 3.9 22 52-73 101-122 (359)
354 1r2q_A RAS-related protein RAB 84.7 0.6 2.1E-05 36.2 3.1 20 58-77 8-27 (170)
355 1z0f_A RAB14, member RAS oncog 84.6 0.6 2E-05 36.7 3.1 20 58-77 17-36 (179)
356 2b8t_A Thymidine kinase; deoxy 84.6 0.77 2.6E-05 39.7 4.0 27 55-81 11-37 (223)
357 2gj8_A MNME, tRNA modification 84.6 0.55 1.9E-05 37.7 2.9 22 56-77 4-25 (172)
358 2xxa_A Signal recognition part 84.5 0.74 2.5E-05 43.7 4.2 46 38-83 73-127 (433)
359 1g16_A RAS-related protein SEC 84.5 0.54 1.8E-05 36.6 2.7 20 58-77 5-24 (170)
360 2nzj_A GTP-binding protein REM 84.4 0.57 2E-05 36.7 2.9 20 58-77 6-25 (175)
361 2qnr_A Septin-2, protein NEDD5 84.4 0.43 1.5E-05 42.8 2.3 23 56-78 18-40 (301)
362 1r8s_A ADP-ribosylation factor 84.3 0.63 2.2E-05 36.1 3.1 19 59-77 3-21 (164)
363 1upt_A ARL1, ADP-ribosylation 84.3 0.63 2.2E-05 36.3 3.1 20 57-76 8-27 (171)
364 1r6b_X CLPA protein; AAA+, N-t 84.3 0.6 2.1E-05 46.8 3.6 24 57-80 489-512 (758)
365 2a9k_A RAS-related protein RAL 84.3 0.63 2.1E-05 36.8 3.1 21 57-77 19-39 (187)
366 4a14_A Kinesin, kinesin-like p 84.3 0.84 2.9E-05 42.0 4.3 22 52-73 80-101 (344)
367 2wbe_C Bipolar kinesin KRP-130 84.3 0.95 3.2E-05 42.2 4.7 35 38-73 83-118 (373)
368 2orw_A Thymidine kinase; TMTK, 84.3 0.72 2.5E-05 38.2 3.5 24 56-79 3-27 (184)
369 1ypw_A Transitional endoplasmi 84.2 0.52 1.8E-05 48.2 3.1 27 54-80 236-262 (806)
370 3bc1_A RAS-related protein RAB 84.2 0.64 2.2E-05 37.0 3.1 20 58-77 13-32 (195)
371 2lkc_A Translation initiation 84.2 0.6 2.1E-05 36.8 2.9 23 55-77 7-29 (178)
372 2dhr_A FTSH; AAA+ protein, hex 84.1 0.61 2.1E-05 45.1 3.4 25 56-80 64-88 (499)
373 4a82_A Cystic fibrosis transme 84.1 0.32 1.1E-05 47.6 1.5 28 54-81 365-392 (578)
374 1nrj_B SR-beta, signal recogni 84.1 0.62 2.1E-05 38.4 3.1 24 55-78 11-34 (218)
375 3clv_A RAB5 protein, putative; 84.1 0.63 2.2E-05 37.1 3.0 22 57-78 8-29 (208)
376 3con_A GTPase NRAS; structural 84.1 0.64 2.2E-05 37.3 3.1 21 57-77 22-42 (190)
377 2fz4_A DNA repair protein RAD2 84.1 0.72 2.5E-05 39.6 3.5 38 40-80 95-132 (237)
378 2y65_A Kinesin, kinesin heavy 84.0 0.87 3E-05 42.4 4.3 22 52-73 81-102 (365)
379 4dsu_A GTPase KRAS, isoform 2B 84.0 0.65 2.2E-05 36.9 3.0 20 58-77 6-25 (189)
380 3lda_A DNA repair protein RAD5 83.9 0.57 1.9E-05 44.1 3.0 23 55-77 177-199 (400)
381 1pui_A ENGB, probable GTP-bind 83.9 0.34 1.2E-05 39.7 1.4 25 53-77 23-47 (210)
382 2qag_C Septin-7; cell cycle, c 83.9 0.49 1.7E-05 44.8 2.6 25 55-79 30-54 (418)
383 1e9r_A Conjugal transfer prote 83.8 0.65 2.2E-05 43.3 3.4 31 54-84 51-81 (437)
384 2gxq_A Heat resistant RNA depe 83.8 1.2 4.2E-05 36.3 4.7 55 20-81 9-64 (207)
385 1goj_A Kinesin, kinesin heavy 83.8 0.88 3E-05 42.1 4.2 35 38-73 63-98 (355)
386 2owm_A Nckin3-434, related to 83.7 1 3.6E-05 42.9 4.8 22 52-73 133-154 (443)
387 3pqc_A Probable GTP-binding pr 83.7 0.53 1.8E-05 37.6 2.4 20 58-77 25-44 (195)
388 4etp_A Kinesin-like protein KA 83.7 1 3.5E-05 42.4 4.7 34 39-73 125-158 (403)
389 3kkq_A RAS-related protein M-R 83.6 0.69 2.4E-05 36.8 3.1 20 58-77 20-39 (183)
390 3ihw_A Centg3; RAS, centaurin, 83.6 0.67 2.3E-05 37.6 3.0 23 55-77 19-41 (184)
391 3lxx_A GTPase IMAP family memb 83.6 0.61 2.1E-05 39.6 2.9 21 57-77 30-50 (239)
392 2v3c_C SRP54, signal recogniti 83.5 0.76 2.6E-05 43.6 3.7 28 56-83 99-126 (432)
393 2zfi_A Kinesin-like protein KI 83.5 0.93 3.2E-05 42.1 4.3 22 52-73 86-107 (366)
394 2efe_B Small GTP-binding prote 83.5 0.7 2.4E-05 36.5 3.0 21 57-77 13-33 (181)
395 3p32_A Probable GTPase RV1496/ 83.5 1.7 5.8E-05 39.6 6.0 41 42-82 64-105 (355)
396 3q85_A GTP-binding protein REM 83.5 0.67 2.3E-05 36.2 2.9 19 58-76 4-22 (169)
397 2g6b_A RAS-related protein RAB 83.4 0.72 2.5E-05 36.4 3.1 20 58-77 12-31 (180)
398 3b6e_A Interferon-induced heli 83.4 0.65 2.2E-05 38.0 2.9 43 34-81 31-73 (216)
399 3bh0_A DNAB-like replicative h 83.4 0.93 3.2E-05 40.7 4.2 28 55-82 67-94 (315)
400 1g41_A Heat shock protein HSLU 83.4 1.7 5.8E-05 41.5 6.1 25 56-80 50-74 (444)
401 3bk7_A ABC transporter ATP-bin 83.4 0.65 2.2E-05 46.0 3.3 27 54-80 115-141 (607)
402 2bme_A RAB4A, RAS-related prot 83.3 0.63 2.1E-05 37.1 2.7 20 58-77 12-31 (186)
403 2nr8_A Kinesin-like protein KI 83.3 0.86 2.9E-05 42.3 3.9 22 52-73 100-121 (358)
404 2bov_A RAla, RAS-related prote 83.2 0.72 2.5E-05 37.3 3.1 21 57-77 15-35 (206)
405 1qde_A EIF4A, translation init 83.2 1.3 4.5E-05 36.7 4.8 61 13-81 16-77 (224)
406 3lre_A Kinesin-like protein KI 83.2 0.8 2.7E-05 42.4 3.7 22 52-73 102-123 (355)
407 2y8e_A RAB-protein 6, GH09086P 83.0 0.67 2.3E-05 36.4 2.7 21 57-77 15-35 (179)
408 1tq4_A IIGP1, interferon-induc 82.9 0.59 2E-05 44.2 2.7 24 57-80 70-93 (413)
409 2gf0_A GTP-binding protein DI- 82.9 0.83 2.8E-05 36.7 3.3 25 54-78 6-30 (199)
410 2oil_A CATX-8, RAS-related pro 82.9 0.77 2.6E-05 37.0 3.1 20 58-77 27-46 (193)
411 1svi_A GTP-binding protein YSX 82.8 0.61 2.1E-05 37.5 2.4 22 56-77 23-44 (195)
412 1x88_A Kinesin-like protein KI 82.8 0.96 3.3E-05 41.9 4.0 22 52-73 85-106 (359)
413 2p67_A LAO/AO transport system 82.7 1.7 5.9E-05 39.4 5.7 40 44-83 43-83 (341)
414 1mh1_A RAC1; GTP-binding, GTPa 82.7 0.8 2.7E-05 36.2 3.1 20 58-77 7-26 (186)
415 2www_A Methylmalonic aciduria 82.6 1.1 3.9E-05 40.8 4.5 27 56-82 74-100 (349)
416 2cxx_A Probable GTP-binding pr 82.6 0.62 2.1E-05 37.1 2.4 20 58-77 3-22 (190)
417 1z06_A RAS-related protein RAB 82.6 0.78 2.7E-05 36.9 3.0 22 56-77 20-41 (189)
418 3pey_A ATP-dependent RNA helic 82.6 2.6 8.8E-05 37.5 6.8 62 10-77 4-65 (395)
419 2r2a_A Uncharacterized protein 82.5 0.78 2.7E-05 38.8 3.0 18 58-75 7-24 (199)
420 3tkl_A RAS-related protein RAB 82.4 0.81 2.8E-05 36.7 3.1 20 58-77 18-37 (196)
421 1t5c_A CENP-E protein, centrom 82.4 0.81 2.8E-05 42.3 3.4 22 52-73 74-95 (349)
422 1tf7_A KAIC; homohexamer, hexa 82.4 0.85 2.9E-05 43.9 3.7 36 47-82 270-307 (525)
423 2hxs_A RAB-26, RAS-related pro 82.4 0.77 2.6E-05 36.1 2.9 20 58-77 8-27 (178)
424 3bwd_D RAC-like GTP-binding pr 82.4 0.83 2.8E-05 36.1 3.1 21 57-77 9-29 (182)
425 3q72_A GTP-binding protein RAD 82.4 0.64 2.2E-05 36.2 2.4 19 58-76 4-22 (166)
426 3ozx_A RNAse L inhibitor; ATP 82.3 0.74 2.5E-05 44.9 3.2 27 55-81 293-319 (538)
427 2a5j_A RAS-related protein RAB 82.2 0.84 2.9E-05 36.8 3.1 20 58-77 23-42 (191)
428 3b6u_A Kinesin-like protein KI 82.1 1 3.5E-05 42.1 3.9 21 53-73 99-119 (372)
429 1vg8_A RAS-related protein RAB 82.0 0.84 2.9E-05 37.0 3.0 20 58-77 10-29 (207)
430 2vvg_A Kinesin-2; motor protei 81.9 0.99 3.4E-05 41.7 3.8 21 53-73 87-107 (350)
431 3tw8_B RAS-related protein RAB 81.9 0.77 2.6E-05 36.1 2.7 19 58-76 11-29 (181)
432 2r6a_A DNAB helicase, replicat 81.8 1.1 3.7E-05 42.3 4.1 29 55-83 202-230 (454)
433 1m7b_A RND3/RHOE small GTP-bin 81.6 0.79 2.7E-05 36.7 2.7 20 58-77 9-28 (184)
434 2gf9_A RAS-related protein RAB 81.5 0.93 3.2E-05 36.4 3.1 20 58-77 24-43 (189)
435 1x3s_A RAS-related protein RAB 81.4 0.94 3.2E-05 36.2 3.1 20 58-77 17-36 (195)
436 2zr9_A Protein RECA, recombina 81.2 1 3.5E-05 41.3 3.6 37 46-82 48-87 (349)
437 1v5w_A DMC1, meiotic recombina 81.2 1 3.5E-05 41.0 3.6 25 55-79 121-145 (343)
438 2p5s_A RAS and EF-hand domain 81.2 0.96 3.3E-05 36.8 3.1 22 56-77 28-49 (199)
439 1zj6_A ADP-ribosylation factor 81.2 1.8 6.2E-05 34.6 4.8 25 53-77 13-37 (187)
440 2atv_A RERG, RAS-like estrogen 81.1 0.96 3.3E-05 36.6 3.0 23 55-77 27-49 (196)
441 3reg_A RHO-like small GTPase; 81.0 0.98 3.3E-05 36.5 3.1 23 55-77 22-44 (194)
442 3ux8_A Excinuclease ABC, A sub 81.0 0.55 1.9E-05 46.7 1.8 23 55-77 347-369 (670)
443 4b4t_K 26S protease regulatory 81.0 1.2 4E-05 42.3 4.0 28 54-81 204-231 (428)
444 2xtp_A GTPase IMAP family memb 81.0 0.75 2.6E-05 39.5 2.5 23 56-78 22-44 (260)
445 1h65_A Chloroplast outer envel 80.9 1.5 5.2E-05 38.0 4.5 32 46-77 28-60 (270)
446 3c5c_A RAS-like protein 12; GD 80.9 0.98 3.3E-05 36.5 3.0 22 56-77 21-42 (187)
447 1zbd_A Rabphilin-3A; G protein 80.9 0.93 3.2E-05 36.8 2.9 19 58-76 10-28 (203)
448 3t1o_A Gliding protein MGLA; G 80.7 1 3.5E-05 35.9 3.1 17 58-74 16-32 (198)
449 1f6b_A SAR1; gtpases, N-termin 80.7 1.1 3.8E-05 36.6 3.3 31 46-76 15-45 (198)
450 1vec_A ATP-dependent RNA helic 80.7 1.9 6.4E-05 35.1 4.7 55 13-75 5-59 (206)
451 3szr_A Interferon-induced GTP- 80.6 0.68 2.3E-05 45.7 2.3 22 59-80 48-69 (608)
452 3l0o_A Transcription terminati 80.6 2.4 8.4E-05 40.2 5.9 44 39-82 158-201 (427)
453 1moz_A ARL1, ADP-ribosylation 80.5 0.95 3.2E-05 35.9 2.8 23 54-76 16-38 (183)
454 3t5g_A GTP-binding protein RHE 80.5 0.92 3.2E-05 35.9 2.7 20 58-77 8-27 (181)
455 4f4c_A Multidrug resistance pr 80.4 0.46 1.6E-05 51.2 1.0 28 54-81 1103-1130(1321)
456 1zd9_A ADP-ribosylation factor 80.4 1.1 3.6E-05 36.2 3.1 22 56-77 22-43 (188)
457 2iwr_A Centaurin gamma 1; ANK 80.3 0.82 2.8E-05 36.1 2.3 20 58-77 9-28 (178)
458 3t0q_A AGR253WP; kinesin, alph 80.3 1.3 4.3E-05 41.0 3.8 35 38-73 69-103 (349)
459 2fg5_A RAB-22B, RAS-related pr 80.2 0.93 3.2E-05 36.7 2.7 21 57-77 24-44 (192)
460 1v8k_A Kinesin-like protein KI 80.2 0.94 3.2E-05 42.9 3.0 22 52-73 151-172 (410)
461 3hr8_A Protein RECA; alpha and 80.1 1.2 4.1E-05 41.2 3.6 40 43-82 45-87 (356)
462 3nbx_X ATPase RAVA; AAA+ ATPas 80.1 1.5 5.3E-05 42.3 4.6 24 57-80 42-65 (500)
463 3u06_A Protein claret segregat 79.9 1.1 3.8E-05 42.4 3.4 34 39-73 123-156 (412)
464 3oes_A GTPase rhebl1; small GT 79.9 0.97 3.3E-05 36.8 2.7 31 46-77 15-45 (201)
465 3bk7_A ABC transporter ATP-bin 79.9 1 3.6E-05 44.5 3.4 26 55-80 381-406 (607)
466 3j16_B RLI1P; ribosome recycli 79.8 1.1 3.6E-05 44.5 3.4 24 57-80 379-402 (608)
467 2heh_A KIF2C protein; kinesin, 79.8 1.1 3.9E-05 42.0 3.4 21 53-73 132-152 (387)
468 3dz8_A RAS-related protein RAB 79.8 0.99 3.4E-05 36.4 2.7 20 58-77 25-44 (191)
469 2ew1_A RAS-related protein RAB 79.7 0.98 3.3E-05 37.4 2.7 21 58-78 28-48 (201)
470 2bcg_Y Protein YP2, GTP-bindin 79.7 0.99 3.4E-05 36.8 2.7 20 58-77 10-29 (206)
471 1yqt_A RNAse L inhibitor; ATP- 79.7 0.96 3.3E-05 44.0 3.0 26 55-80 311-336 (538)
472 3fht_A ATP-dependent RNA helic 79.7 1.4 4.8E-05 39.7 3.9 66 10-81 24-90 (412)
473 1ksh_A ARF-like protein 2; sma 79.7 1.1 3.7E-05 35.8 2.8 24 54-77 16-39 (186)
474 1q0u_A Bstdead; DEAD protein, 79.7 1.7 5.9E-05 36.0 4.2 61 12-80 5-66 (219)
475 1fzq_A ADP-ribosylation factor 79.6 0.89 3E-05 36.6 2.4 21 56-76 16-36 (181)
476 2z43_A DNA repair and recombin 79.6 1 3.5E-05 40.5 3.0 26 55-80 106-131 (324)
477 2pl3_A Probable ATP-dependent 79.6 2.1 7.1E-05 35.9 4.8 39 40-81 49-88 (236)
478 1f9v_A Kinesin-like protein KA 79.6 1.4 4.7E-05 40.7 3.9 22 52-73 81-102 (347)
479 2q3h_A RAS homolog gene family 79.4 1.1 3.8E-05 36.2 2.9 21 57-77 21-41 (201)
480 1f2t_A RAD50 ABC-ATPase; DNA d 79.3 1.3 4.3E-05 35.4 3.1 22 57-78 24-45 (149)
481 2j37_W Signal recognition part 79.3 1.3 4.6E-05 42.8 3.9 28 56-83 101-128 (504)
482 1t9h_A YLOQ, probable GTPase E 79.2 0.46 1.6E-05 43.1 0.5 26 54-79 171-196 (307)
483 1e69_A Chromosome segregation 79.2 0.92 3.1E-05 40.7 2.5 21 57-77 25-45 (322)
484 3qf7_A RAD50; ABC-ATPase, ATPa 79.1 1 3.5E-05 41.4 2.9 21 57-77 24-44 (365)
485 2o52_A RAS-related protein RAB 79.1 1 3.4E-05 36.9 2.5 21 57-77 26-46 (200)
486 2fv8_A H6, RHO-related GTP-bin 79.0 1.1 3.6E-05 36.9 2.7 21 57-77 26-46 (207)
487 2il1_A RAB12; G-protein, GDP, 78.9 1.1 3.8E-05 36.3 2.7 19 58-76 28-46 (192)
488 4b4t_L 26S protease subunit RP 78.9 1.5 5.2E-05 41.7 4.0 28 54-81 213-240 (437)
489 1u94_A RECA protein, recombina 78.9 1.6 5.3E-05 40.3 4.0 38 46-83 50-90 (356)
490 4bas_A ADP-ribosylation factor 78.9 0.9 3.1E-05 36.5 2.1 21 56-76 17-37 (199)
491 1c9k_A COBU, adenosylcobinamid 78.8 1 3.5E-05 37.7 2.5 20 59-78 2-21 (180)
492 3ber_A Probable ATP-dependent 78.8 1.8 6.1E-05 37.1 4.2 36 44-82 71-107 (249)
493 3cph_A RAS-related protein SEC 78.8 1.3 4.3E-05 36.1 3.1 20 58-77 22-41 (213)
494 4b4t_M 26S protease regulatory 78.7 1.6 5.3E-05 41.6 4.0 28 54-81 213-240 (434)
495 1zcb_A G alpha I/13; GTP-bindi 78.7 1.3 4.3E-05 41.0 3.3 23 54-76 31-53 (362)
496 1sky_E F1-ATPase, F1-ATP synth 78.6 1.7 5.7E-05 41.9 4.2 44 39-82 134-177 (473)
497 3dkp_A Probable ATP-dependent 78.5 2.6 8.8E-05 35.5 5.1 40 39-81 52-92 (245)
498 1t6n_A Probable ATP-dependent 78.5 2.1 7.3E-05 35.3 4.5 61 11-79 14-74 (220)
499 2h58_A Kinesin-like protein KI 78.5 1.3 4.4E-05 40.6 3.3 22 52-73 77-98 (330)
500 2i1q_A DNA repair and recombin 78.5 1.2 4E-05 39.8 3.0 25 55-79 97-121 (322)
No 1
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=100.00 E-value=1.9e-98 Score=764.27 Aligned_cols=264 Identities=47% Similarity=0.733 Sum_probs=243.2
Q ss_pred CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
||+|++||+||||+.+|+|+++++++|+++.+.++|||||++|+.||+.|+..++||||||||||||||||++|+||+||
T Consensus 116 Ty~G~iLvavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~im~yl 195 (783)
T 4db1_A 116 TYSGLFCVTVNPYKWLPVYTPEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSILITGESGAGKTVNTKRVIQYF 195 (783)
T ss_dssp EEETTEEEEECCSSCCSCSSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred EecCceeEecCCCccCCCCCHHHHHHhcCCCcCCCCchhhHHHHHHHHHHHhhCCCceEEEeCCCCCCCchHHHHHHHhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCC----------cchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccc
Q psy17386 81 CSVTSNV----------STWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITF 150 (276)
Q Consensus 81 ~~~~~~~----------~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~ 150 (276)
+.++++. ...++++|++++|||||||||||++|+||||||||++|+|+.+|.|+||+|.+||||||||+.
T Consensus 196 a~v~~~~~~~~~~~~~~~~~ve~~il~snpiLEAFGNAkT~rNdNSSRFGK~i~i~F~~~g~i~Ga~I~~YLLEKSRVv~ 275 (783)
T 4db1_A 196 AVIAAIGDRSKKDQSPGKGTLEDQIIQANPALEAFGNAKTVRNDNSSRFGKFIRIHFGATGKLASADIETYLLEKSRVIF 275 (783)
T ss_dssp HHHSBCCCC-------CCSCHHHHHHHHHHHHHHHHEECCSSCTTEECSEEEEEEEECTTSBEEEEEEEEECCCGGGGTC
T ss_pred hhhccCCCccccccccccccHHHHHHHhHHHHHhccCcccCCCCCCCccceeEEEEECCCCCEeeeEEEEeecccceeec
Confidence 9987643 246899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCchHHHHHHHhhcccChhHHH---------Hcc----------------------------CCChhh--------
Q psy17386 151 QSPGERNYHVFYQLVEAAQYSSSINK---------EIM----------------------------HYTSEE-------- 185 (276)
Q Consensus 151 ~~~~ErnfHIFYqllaG~~~~~~l~~---------~~~----------------------------~~~~~d-------- 185 (276)
|++||||||||||||+|++++ +++ .|+ +|+++|
T Consensus 276 q~~gERnfHIFYqLlaG~~~~--~~~~l~L~~~~~~y~yl~~g~~~~~~~dD~~~f~~~~~Am~~lGfs~~e~~~i~~il 353 (783)
T 4db1_A 276 QLKAERDYHIFYQILSNKKPE--LLDMLLITNNPYDYAFISQGETTVASIDDAEELMATDNAFDVLGFTSEEKNSMYKLT 353 (783)
T ss_dssp CCTTCCSBHHHHHHHTCSSHH--HHHHTTCCSCGGGCGGGCSSCCCCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred cCCCCCcchhHHHHHcCCCHH--HHHHhccCCCHHHCccccCCCcccCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 999999999999999998742 221 111 222211
Q ss_pred ---------------------------------------------------------------------hhhh------h
Q psy17386 186 ---------------------------------------------------------------------KSHV------I 190 (276)
Q Consensus 186 ---------------------------------------------------------------------~rda------~ 190 (276)
+||| +
T Consensus 354 aaILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~aL~~~~i~~~~e~v~~~~~~~qA~~~rdalAK~lY~ 433 (783)
T 4db1_A 354 GAIMHFGNMKFKLKQREEQAEPDGTEEADKSAYLMGLNSADLLKGLCHPRVKVGNEYVTKGQNVQQVIYATGALAKAVYE 433 (783)
T ss_dssp HHHHHHTTCCEEECTTSSCEEESCCHHHHHHHHHTTCCHHHHHHHHHSCC------CCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccceeeccCCCcccccCChHHHHHHHHHhCCCHHHHHHhhcceEEEeCCeeEeeCCCHHHHHHHHHHHHHHHHH
Confidence 4565 9
Q ss_pred hHHHHHHHHhhhccCCCCCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCch
Q psy17386 191 WVFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPRL 266 (276)
Q Consensus 191 ~LF~wlv~~iN~~l~~~~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~~ 266 (276)
|||+|||++||++|.+......+||||||||||+|+.|||||||||||||||||+||++||+.||+||.+|||+|.
T Consensus 434 rLF~wlV~~IN~~l~~~~~~~~~IGvLDI~GFE~f~~NsFEQlCINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~ 509 (783)
T 4db1_A 434 RMFNWMVTRINATLETKQPRQYFIGVLDIAGFEIFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWT 509 (783)
T ss_dssp HHHHHHHHHHHHHHCCSCCCSEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHhcCCCCCCCceEEEeccccccccccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcc
Confidence 9999999999999987766778999999999999999999999999999999999999999999999999999983
No 2
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=100.00 E-value=4e-98 Score=755.21 Aligned_cols=266 Identities=42% Similarity=0.671 Sum_probs=241.9
Q ss_pred CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
||+|++||+||||+.+|+|+++++++|+++.+.++|||||++|++||+.|+.+++||||||||||||||||++|+||+||
T Consensus 39 Ty~G~iLiavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~~yl 118 (697)
T 1lkx_A 39 TYIGDVVISTNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFL 118 (697)
T ss_dssp EESSSCEEEECCSSCCSCCSHHHHHHHSSCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred EeeCCeEEEEcCCcCCCCCCHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHhcCCCcEEEecCCCCCCchhhHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCC---cchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCCc
Q psy17386 81 CSVTSNV---STWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERN 157 (276)
Q Consensus 81 ~~~~~~~---~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~Ern 157 (276)
+.++++. ...++++|++++|||||||||||++|+||||||||++|+|+.+|.++||+|.+||||||||+.|++||||
T Consensus 119 a~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~yLLEKSRVv~q~~gERn 198 (697)
T 1lkx_A 119 TFVSSNQSPNGERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQFNAVGSPIGGKITNYLLEKSRVVGRTQGERS 198 (697)
T ss_dssp HHHSCSSCHHHHHHHHHHHHHHHHHHHHHBBCCSSCSSCBCSEEEEEEEECTTCCEEEEEEEEECCCGGGGTCCCTTCCC
T ss_pred HhhcCCCCCccccHHHHHHhcchHHHHhcCcccCCCCCcchhheeEEEEECCCCCEeeeeeeeeeccCceeeeecCCCCc
Confidence 9998732 2468899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhcccChh--HH-----HHcc-----------------------------C---------------------
Q psy17386 158 YHVFYQLVEAAQYSSS--IN-----KEIM-----------------------------H--------------------- 180 (276)
Q Consensus 158 fHIFYqllaG~~~~~~--l~-----~~~~-----------------------------~--------------------- 180 (276)
||||||||+|++++.. |. +.|+ |
T Consensus 199 fHIFYqllaG~~~~~~~~l~L~~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~Am~~lG~~~~e~~~i~~ilaaILhLGN 278 (697)
T 1lkx_A 199 FHIFYQMLKGLSQSKLDELGLTPNAPAYEYLKKSGCFDVSTIDDSGEFKIIVKAMETLGLKESDQNSIWRILAAILHIGN 278 (697)
T ss_dssp BHHHHHHHTTSCHHHHHHHTCCSCGGGSHHHHHTTCCCCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred eeehhHHhcCCCHHHHHHhcCCCChhhCccccCCCCcccCCCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccc
Confidence 9999999999874311 00 0111 1
Q ss_pred --CCh-----h--h-------------------------------------------------------hhhh------h
Q psy17386 181 --YTS-----E--E-------------------------------------------------------KSHV------I 190 (276)
Q Consensus 181 --~~~-----~--d-------------------------------------------------------~rda------~ 190 (276)
|.. + | +||| +
T Consensus 279 i~F~~~~~~~~~~~~~~v~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~~~g~~~e~i~~~l~~~qA~~~rdalaK~lY~ 358 (697)
T 1lkx_A 279 ITFAEAAEQRTGTTTVKVSDTKSLAAAASCLKTDQQSLSIALCYRSISTGVGKRCSVISVPMDCNQAAYSRDALAKALYE 358 (697)
T ss_dssp CCEEEETTC----CEEEESSHHHHHHHHHHHTSCHHHHHHHHHBCC----------CCCCBCCHHHHHHHHHHHHHHHHH
T ss_pred ceEeecccccCCCCcceeCCHHHHHHHHHhhCCCHHHHHHHHhccEEeeccCCCCCeEEecCCHHHHHHHHHHHHHHHHH
Confidence 211 0 0 3455 9
Q ss_pred hHHHHHHHHhhhccCCCCCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCch
Q psy17386 191 WVFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPRL 266 (276)
Q Consensus 191 ~LF~wlv~~iN~~l~~~~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~~ 266 (276)
|||+|||++||++|.++.....+||||||||||+|+.|||||||||||||||||+|++++|+.||+||++|||+|.
T Consensus 359 rLF~wlV~~IN~~l~~~~~~~~~IGvLDI~GFE~f~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~ 434 (697)
T 1lkx_A 359 RLFNWLVSKINTIINCTTEKGPVIGILDIYGFEVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWK 434 (697)
T ss_dssp HHHHHHHHHHHHHHCCCSCCCCEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHhhcCCCCCCceeEEeeccccccccCcCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 9999999999999987666689999999999999999999999999999999999999999999999999999974
No 3
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=100.00 E-value=3.6e-98 Score=764.37 Aligned_cols=266 Identities=45% Similarity=0.794 Sum_probs=244.7
Q ss_pred CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
||+|++||+||||+.+|+|+++++++|+++.+.++|||||++|+.||+.|+.+++||||||||||||||||++|++|+||
T Consensus 101 Ty~G~iLiavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~~yl 180 (795)
T 1w7j_A 101 TYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYF 180 (795)
T ss_dssp EEETTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hccCcceEEecCccccCcCCHHHHHHHcCCCccCCCccHhHHHHHHHHHhHhcCCCeEEEEeCCCCCCcchHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCC-cchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCCchH
Q psy17386 81 CSVTSNV-STWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYH 159 (276)
Q Consensus 81 ~~~~~~~-~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~ErnfH 159 (276)
+.++++. ...++++|++++|||||||||||++|+||||||||++|+|+.+|.|+||+|.+||||||||+.|++||||||
T Consensus 181 a~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~YLLEKSRVv~q~~gERNfH 260 (795)
T 1w7j_A 181 ATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQAEEERNYH 260 (795)
T ss_dssp HHHTCCSSSSCHHHHHHHHHHHHHHHHEECCSSCTTEECSEEEEEEEECTTSCEEEEEEEEECCCGGGGTCCCTTCCSBH
T ss_pred HhhcCCCCccchHHHHHHHHHHHHHhcCccCCCCCCccccceEEEEEECCCCCEeeeeceEEecccceEeccCCCCCchH
Confidence 9998754 358999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccChh--HH----HHcc-----------------------------CCChhh-------------------
Q psy17386 160 VFYQLVEAAQYSSS--IN----KEIM-----------------------------HYTSEE------------------- 185 (276)
Q Consensus 160 IFYqllaG~~~~~~--l~----~~~~-----------------------------~~~~~d------------------- 185 (276)
||||||+|+++++. |. +.|+ ||+++|
T Consensus 261 IFYqLlag~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~dD~~~f~~~~~Am~~lG~s~~e~~~i~~ilaaILhLGNi~F 340 (795)
T 1w7j_A 261 IFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEF 340 (795)
T ss_dssp HHHHHHHTTTSGGGGGGCCCCTTTSHHHHTTSCCCCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCC
T ss_pred hHHHHHcCCCHHHHHHccCCChHhCccccCCCCCcCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceE
Confidence 99999999875321 00 1111 222221
Q ss_pred ----------------------------------------------------------hhhh------hhHHHHHHHHhh
Q psy17386 186 ----------------------------------------------------------KSHV------IWVFAWLVNHIN 201 (276)
Q Consensus 186 ----------------------------------------------------------~rda------~~LF~wlv~~iN 201 (276)
+||| ++||+|||++||
T Consensus 341 ~~~~~~~~~v~~~~~~l~~~a~LLgv~~~~L~~aL~~~~~~~~~e~v~~~~~~~qA~~~rdalaK~lY~rLF~wlV~~IN 420 (795)
T 1w7j_A 341 ASRDSDSCAIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVN 420 (795)
T ss_dssp EEEETTEEECCTTCHHHHHHHHHHTCCHHHHHHHHSEEEEECSSCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecCCcceeecCChHHHHHHHHHhCCCHHHHHHHhcccEEEeCCceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566 999999999999
Q ss_pred hccCCCCCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCch
Q psy17386 202 TCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPRL 266 (276)
Q Consensus 202 ~~l~~~~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~~ 266 (276)
++|.++.+...+||||||||||+|+.|||||||||||||||||+|++++|+.||+||++|||+|.
T Consensus 421 ~~l~~~~~~~~~IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~ 485 (795)
T 1w7j_A 421 KALHSTVKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWT 485 (795)
T ss_dssp HHHCCSSCCSEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGG
T ss_pred HhhcCCccccceEEeeccCcccccCcCCHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 99987766789999999999999999999999999999999999999999999999999999885
No 4
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=100.00 E-value=1.2e-97 Score=763.90 Aligned_cols=266 Identities=47% Similarity=0.770 Sum_probs=243.9
Q ss_pred CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
||+|++||+||||+.+|+|+++++++|+++.+.++|||||++|+.||+.|+.+++||||||||||||||||++|+||+||
T Consensus 114 Ty~G~iLiavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~i~~yl 193 (837)
T 1kk8_A 114 TYSGLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMYL 193 (837)
T ss_dssp EEETTEEEEECCSSCCSTTSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eeccceeEEeCCCcCCCCCCHHHHHHhcCCCcCCCCCcHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCchhhHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCC-----------cchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeeccccccc
Q psy17386 81 CSVTSNV-----------STWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRIT 149 (276)
Q Consensus 81 ~~~~~~~-----------~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~ 149 (276)
+.++++. ...++++|++++|||||||||||++|+||||||||++|+|+.+|.|+||+|.+||||||||+
T Consensus 194 a~~~~~~~~~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~YLLEKSRVv 273 (837)
T 1kk8_A 194 AKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFGPTGKIAGADIETYLLEKSRVT 273 (837)
T ss_dssp HHHSCCCCCC--------CCCHHHHHHHHHHHHHHHHEECCSSCTTEESSEEEEEEEECTTSSEEEEEEEEECCCGGGGT
T ss_pred HHhcccCCcccccccccccccHHHHHHHHHHHHHHhcCccCCCCCCCCCceeEEEEEECCCCCEeeeEEEEEeccCceee
Confidence 9998643 14689999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCchHHHHHHHhhcccChh--HH-----HHcc----------------------------CCChhh---------
Q psy17386 150 FQSPGERNYHVFYQLVEAAQYSSS--IN-----KEIM----------------------------HYTSEE--------- 185 (276)
Q Consensus 150 ~~~~~ErnfHIFYqllaG~~~~~~--l~-----~~~~----------------------------~~~~~d--------- 185 (276)
.|++||||||||||||+|++++.. |. +.|+ ||+++|
T Consensus 274 ~q~~gERNfHIFYqLlaG~~~~~~~~l~L~~~~~~y~yL~~g~~~~~~~dD~~~f~~~~~Am~~lGfs~~e~~~i~~ilA 353 (837)
T 1kk8_A 274 YQQSAERNYHIFYQICSNAIPELNDVMLVTPDSGLYSFINQGCLTVDNIDDVEEFKLCDEAFDILGFTKEEKQSMFKCTA 353 (837)
T ss_dssp CCCTTCCSBHHHHHHTSCSSGGGHHHHTCCSCGGGCTTTCSSCSCBTTBCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred eecCCCCceeehHHHHcCCCHHHHHHhCCCCChhhcccccCCCcccCCcChHHHHHHHHHHHHhcCcCHHHHHHHHHHHH
Confidence 999999999999999999975421 00 1121 222221
Q ss_pred --------------------------------------------------------------------hhhh------hh
Q psy17386 186 --------------------------------------------------------------------KSHV------IW 191 (276)
Q Consensus 186 --------------------------------------------------------------------~rda------~~ 191 (276)
+||| ++
T Consensus 354 aILhLGNi~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~aL~~~~~~~~~e~v~~~~~~~qA~~~rdalaK~lY~r 433 (837)
T 1kk8_A 354 SILHMGEMKFKQRPREEQAESDGTAEAEKVAFLCGINAGDLLKALLKPKVKVGTEMVTKGQNMNQVVNSVGALAKSLYDR 433 (837)
T ss_dssp HHHHHTTCCEEC----CCCEESCSHHHHHHHHHHTSCHHHHHHHHHSCEEC----CEECCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhccceEEecCCCCccccCCHHHHHHHHHHHCCCHHHHHHHhcCcEEEcCCceEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 4565 99
Q ss_pred HHHHHHHHhhhccCCCCCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCch
Q psy17386 192 VFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPRL 266 (276)
Q Consensus 192 LF~wlv~~iN~~l~~~~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~~ 266 (276)
||+|||++||++|.+......+||||||||||+|+.|||||||||||||||||+|++++|+.||+||.+|||+|.
T Consensus 434 LF~wlV~~IN~~l~~~~~~~~~IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~ 508 (837)
T 1kk8_A 434 MFNWLVRRVNKTLDTKAKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWE 508 (837)
T ss_dssp HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHhccCCCCCcceEEEEecCCccccccccHHHHHHHHhhHHHHHHHHHhhhHHHHHHhhhcCCcee
Confidence 999999999999987666789999999999999999999999999999999999999999999999999999873
No 5
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=100.00 E-value=2.9e-97 Score=753.95 Aligned_cols=264 Identities=52% Similarity=0.811 Sum_probs=241.7
Q ss_pred CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
||+|++||+||||+++|+|+++++++|+++.+.++|||||++|+.||+.|+.+++||||||||||||||||++|+||+||
T Consensus 117 Ty~G~iLvavNPyk~l~iY~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~~yl 196 (770)
T 1w9i_A 117 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYL 196 (770)
T ss_dssp EEETTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eccCceeEEecCCccccCCCHHHHHHhcCCCcCCCCccHHHHHHHHHHHHHhhcCCcEEEEecCCCCcchHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCc----chHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCC
Q psy17386 81 CSVTSNVS----TWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGER 156 (276)
Q Consensus 81 ~~~~~~~~----~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~Er 156 (276)
+.++++.. ..++++|++++|||||||||||++|+||||||||++|+|+.+|.|+||+|.+||||||||+.|++|||
T Consensus 197 a~~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~yLLEKSRVv~q~~gER 276 (770)
T 1w9i_A 197 ASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETER 276 (770)
T ss_dssp HHHHCC------CHHHHHHHHHHHHHHHHHEECCSSCTTEESSEEEEEEEECTTSCEEEEEEEEECCCGGGGTCCCTTCC
T ss_pred HHhccccCCcccCcHHHHHHHHHHHHHHhCCCcCCCCCCcCCcceEEEEEECCCCCEeeeEEEEEeccCceeecccCCCC
Confidence 99987542 57899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHhhcccChh--HH----HHcc-----------------------------CCChhh----------------
Q psy17386 157 NYHVFYQLVEAAQYSSS--IN----KEIM-----------------------------HYTSEE---------------- 185 (276)
Q Consensus 157 nfHIFYqllaG~~~~~~--l~----~~~~-----------------------------~~~~~d---------------- 185 (276)
|||||||||+|++++.. +. +.|+ +|+++|
T Consensus 277 nfHIFYqLlaG~~~~~~~~l~L~~~~~y~yll~~g~~~~~~~dD~~~f~~~~~Am~~lGf~~~e~~~i~~ilaaILhLGN 356 (770)
T 1w9i_A 277 NYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGN 356 (770)
T ss_dssp SBHHHHHHHHHCCHHHHHHHTCCCGGGCTTTSSSSCCCCTTCCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred cchhHHHHhcCCCHHHHHHhCCCChhhccccccCCccccCCCchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcC
Confidence 99999999999975321 00 1111 222211
Q ss_pred ------------------------------------------------------------hhhh------hhHHHHHHHH
Q psy17386 186 ------------------------------------------------------------KSHV------IWVFAWLVNH 199 (276)
Q Consensus 186 ------------------------------------------------------------~rda------~~LF~wlv~~ 199 (276)
+||| +|||+|||++
T Consensus 357 i~F~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~aL~~~~~~~~~e~v~~~~~~~qA~~~rdalaK~lY~rLF~wlV~~ 436 (770)
T 1w9i_A 357 IKFEKGAGEGAVLKDKTALNAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKK 436 (770)
T ss_dssp CCCEECSSSSEECSCCHHHHHHHHHHTCCHHHHHHHHHSCEEEETTEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEecCCCCccccCChHHHHHHHHHhCCCHHHHHHHhhCcEEEeCCeeEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4565 9999999999
Q ss_pred hhhccCCCCCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCc
Q psy17386 200 INTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPR 265 (276)
Q Consensus 200 iN~~l~~~~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~ 265 (276)
||++|.++.. ..+||||||||||+|+.|||||||||||||||||+|++++|+.||+||.+|||+|
T Consensus 437 IN~~l~~~~~-~~~IGvLDI~GFE~F~~NsFEQlCINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w 501 (770)
T 1w9i_A 437 INNVLCQERK-AYFIGVLDIYGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINW 501 (770)
T ss_dssp HHHHHCCSCC-SEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHhcCCCC-CCeeeeccCccccccccCCHHHHHHHhhHHHHHHHHHhhhhHHHHHHhhccCCCc
Confidence 9999986655 8899999999999999999999999999999999999999999999999999997
No 6
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=100.00 E-value=1.8e-96 Score=767.92 Aligned_cols=263 Identities=46% Similarity=0.774 Sum_probs=238.8
Q ss_pred CcccCeEEEecCCCCCC-CCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386 1 TYTGTILVAVNPYKELD-IYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 1 Ty~G~~LiavNP~~~l~-~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~y 79 (276)
||+|++||+||||+.+| +|+++++++|+++.+.++||||||||+.||+.|+..++||||||||||||||||++|+||+|
T Consensus 88 Ty~G~iLIaVNPyk~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTestK~im~y 167 (1052)
T 4anj_A 88 TYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRY 167 (1052)
T ss_dssp EEETTEEEEECCSSCCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred EeECCEEEEECCCCCccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHHHHHHHH
Confidence 89999999999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCcchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCCchH
Q psy17386 80 LCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYH 159 (276)
Q Consensus 80 L~~~~~~~~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~ErnfH 159 (276)
|+.++++ ...++++|++++|||||||||||.+|+||||||||++|+||.+|.|+||+|.+||||||||+.|++||||||
T Consensus 168 La~~~~~-~~~ie~~Il~snpiLEAFGNAKT~rNdNSSRFGK~iel~F~~~G~i~Ga~I~~YLLEKSRVv~q~~gERNfH 246 (1052)
T 4anj_A 168 LTESYGT-GQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYH 246 (1052)
T ss_dssp HHHHHCC----CTTHHHHTHHHHHHHHEECCSSCTTEESSEEEEEEEECTTSCEEEEEEEEECCCSGGGTCCCTTCCSBH
T ss_pred HHHhcCC-CccHHHHHHHHHHHHHhccCCCCCCCCCcCCceeEEEEEECCCCCEEEEEEeccccccCceeecCCCCCCcc
Confidence 9998765 356789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccChh--HH----H----------------------------------------------Hcc--------
Q psy17386 160 VFYQLVEAAQYSSS--IN----K----------------------------------------------EIM-------- 179 (276)
Q Consensus 160 IFYqllaG~~~~~~--l~----~----------------------------------------------~~~-------- 179 (276)
||||||+|++++.. |. + .|.
T Consensus 247 IFYqLlaGa~~~~r~~l~L~~~~~y~yL~qg~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~dD~~~f~~~~~Am~~ 326 (1052)
T 4anj_A 247 IFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKK 326 (1052)
T ss_dssp HHHHHHHHCCHHHHHHHTCCCGGGCHHHHTSCCCCBCCHHHHTTSCGGGCCHHHHHHCCBCCSSCCHHHHHHHHHHHHHH
T ss_pred cHHHHhcCCCHHHHHHcCCCChHhCchhcCCCccccccccchhhhcccccchhhccCCCccCCCcchHHHHHHHHHHHHH
Confidence 99999999875311 00 0 011
Q ss_pred -CCChhh-------------------------------------------------------------------------
Q psy17386 180 -HYTSEE------------------------------------------------------------------------- 185 (276)
Q Consensus 180 -~~~~~d------------------------------------------------------------------------- 185 (276)
||+++|
T Consensus 327 lGfs~~e~~~I~~iLAaILhLGNi~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~aLt~r~~~~~~~~~~~e~ 406 (1052)
T 4anj_A 327 IGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTV 406 (1052)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHTCCEEC-------CEECGGGHHHHHHHHHHTTCCHHHHHHHHHEEC------------
T ss_pred cCCCHHHHHHHHHHHHHHHhhcceeEEecCCCCCCcccccCChHHHHHHHHHhCCCHHHHHHHHhhceeeecccccCceE
Confidence 222211
Q ss_pred ------------hhhh------hhHHHHHHHHhhhccCCCCCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHH
Q psy17386 186 ------------KSHV------IWVFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFN 247 (276)
Q Consensus 186 ------------~rda------~~LF~wlv~~iN~~l~~~~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~ 247 (276)
+||| ++||+|||++||++|.+. ....+||||||||||+|+.|||||||||||||||||+||
T Consensus 407 i~~~l~~~qA~~~rDaLAK~LY~rLF~wiV~~IN~~l~~~-~~~~~IGILDI~GFE~f~~NsFEQLCINyaNEkLQq~Fn 485 (1052)
T 4anj_A 407 IKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFE-TSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFN 485 (1052)
T ss_dssp -CEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCS-CCSEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc-cccceEEEEecCCCcccccCcHHHHHHHHHHHHHHHHHH
Confidence 3565 999999999999999754 457899999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHhhhCCCc
Q psy17386 248 HYVFALEQEIVSISIKPR 265 (276)
Q Consensus 248 ~~~f~~eq~eY~~E~~~~ 265 (276)
++||+.||+||.+|||+|
T Consensus 486 ~~vF~~EqeeY~~EgI~w 503 (1052)
T 4anj_A 486 ERILKEEQELYQKEGLGV 503 (1052)
T ss_dssp HHHTTHHHHHHHHTTCCC
T ss_pred HhhhHHHHHHHHhcCCCc
Confidence 999999999999999987
No 7
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=100.00 E-value=4.9e-96 Score=748.25 Aligned_cols=263 Identities=46% Similarity=0.773 Sum_probs=235.1
Q ss_pred CcccCeEEEecCCCCC-CCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386 1 TYTGTILVAVNPYKEL-DIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 1 Ty~G~~LiavNP~~~l-~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~y 79 (276)
||+|++||+||||+.+ |+|+++++++|+++...++|||||++|++||+.|+..++||||||||||||||||++|+||+|
T Consensus 84 Ty~G~iLiaVNPyk~l~~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~i~~y 163 (784)
T 2v26_A 84 TYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRY 163 (784)
T ss_dssp EEETTEEEEECCSSCCTTTTSHHHHHHHTTCCTTSSCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eeccceEEEecCCcCcCCCCCHHHHHHHhCCCcccCCchHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCceehHHHHHHH
Confidence 8999999999999999 599999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCcchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCCchH
Q psy17386 80 LCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYH 159 (276)
Q Consensus 80 L~~~~~~~~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~ErnfH 159 (276)
|+.++++ ...++++|++++|||||||||||++|+||||||||++|+|+.+|.|+||+|.+||||||||+.|++||||||
T Consensus 164 la~~~~~-~~~ie~~il~snpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~YLLEKSRVv~q~~gERNfH 242 (784)
T 2v26_A 164 LTESYGT-GQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYH 242 (784)
T ss_dssp HHHHHC-------CHHHHTHHHHHHHHEECCSSCTTEECSEEEEEEEECTTSCEEEEEEEEECCCCGGGTCCCTTCCSBH
T ss_pred HHhhcCC-CCcHHHHHHHHHHHHHHhCCCcCCCCCCcchhheEEEEEEecCCcEeeeeeeeeeccCCeEeeecCCCCcch
Confidence 9998764 357899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccChh-------------H---------------------------------------HHHcc--------
Q psy17386 160 VFYQLVEAAQYSSS-------------I---------------------------------------NKEIM-------- 179 (276)
Q Consensus 160 IFYqllaG~~~~~~-------------l---------------------------------------~~~~~-------- 179 (276)
||||||+|++++.. | .+.|.
T Consensus 243 IFYqLlaG~~~~~~~~l~L~~~~~y~yL~~g~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~~~dD~~~f~~~~~Am~~ 322 (784)
T 2v26_A 243 IFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKK 322 (784)
T ss_dssp HHHHHHHHSCHHHHHHTTCCCGGGCHHHHTSCCCCBCCHHHHTTSCGGGCCHHHHHHCCBCCSSCCHHHHHHHHHHHHHH
T ss_pred hhHHHHcCCCHHHHHHcCCCChhhCccccCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHHHHHHHH
Confidence 99999999874210 0 00111
Q ss_pred -CCChhh-------------------------------------------------------------------------
Q psy17386 180 -HYTSEE------------------------------------------------------------------------- 185 (276)
Q Consensus 180 -~~~~~d------------------------------------------------------------------------- 185 (276)
||+++|
T Consensus 323 lG~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~~~~v~~~~~~~l~~~a~LLgv~~~~L~~aL~~r~~~t~~g~~~ge~ 402 (784)
T 2v26_A 323 IGLDDEEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTV 402 (784)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTCCEEECTTTTSSEEECGGGHHHHHHHHHHHTCCHHHHHHHHHEEEC-----------
T ss_pred cCCCHHHHHHHHHHHHHHHhcccceeeeccCCCCccccccCCHHHHHHHHHHhCCCHHHHHHHHhhcEEeccccCCCCCe
Confidence 111110
Q ss_pred ------------hhhh------hhHHHHHHHHhhhccCCCCCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHH
Q psy17386 186 ------------KSHV------IWVFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFN 247 (276)
Q Consensus 186 ------------~rda------~~LF~wlv~~iN~~l~~~~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~ 247 (276)
+||| +|||+|||++||++|.+. ....+||||||||||+|+.|||||||||||||||||+|+
T Consensus 403 i~~~l~~~qA~~~rdalaK~lY~rLF~wlV~~IN~~l~~~-~~~~~IGvLDI~GFE~f~~NsFEQlcINyaNEkLQq~F~ 481 (784)
T 2v26_A 403 IKVPLKVEQANNARDALAKTVYSHLFDHVVNRVNQCFPFE-TSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFN 481 (784)
T ss_dssp CEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCS-CCSEEEEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred EeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cccceeeecccCCcccCCcCCHHHHHHHHHHHHHHHHHH
Confidence 3455 999999999999999653 457899999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHhhhCCCc
Q psy17386 248 HYVFALEQEIVSISIKPR 265 (276)
Q Consensus 248 ~~~f~~eq~eY~~E~~~~ 265 (276)
+++|+.||+||++|||+|
T Consensus 482 ~~~f~~EqeeY~~EgI~w 499 (784)
T 2v26_A 482 ERILKEEQELYQKEGLGV 499 (784)
T ss_dssp HHHTTHHHHHHHHTTCCC
T ss_pred HhhhhhHHHHHHhcCCCc
Confidence 999999999999999987
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=100.00 E-value=7e-96 Score=769.04 Aligned_cols=266 Identities=45% Similarity=0.794 Sum_probs=244.6
Q ss_pred CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
||+|++||+||||+.+|+|+++++..|+++...++|||||+||+.||+.|+.+++||||||||||||||||++|++|+||
T Consensus 101 Ty~G~iLiavNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i~~yl 180 (1080)
T 2dfs_A 101 TYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYF 180 (1080)
T ss_dssp EEETTEEEEECCSSCCSCSSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hccCceeEEecCCcccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCccchHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCC-cchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCCchH
Q psy17386 81 CSVTSNV-STWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYH 159 (276)
Q Consensus 81 ~~~~~~~-~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~ErnfH 159 (276)
+.++++. ...++++|++++|||||||||||++|+||||||||++|+||.+|.|+||+|.+||||||||+.|++||||||
T Consensus 181 a~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~i~F~~~g~i~Ga~i~~yLLEKsRVv~q~~~ERnfH 260 (1080)
T 2dfs_A 181 ATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQAEEERNYH 260 (1080)
T ss_dssp HHTTTCCTTTCTHHHHHHHHHHHHHHHEEEETTEEEEECSEEEEEEEECTTCCEEEEEEEEECCCCGGGTCCCTTCCSBH
T ss_pred HhhccCCCccchHHHHHHHHHHHHHhcCCcCCCCCCccccceeEEEEECCCCCEeeecceeEeecCceeeccCCCCCcch
Confidence 9998754 357899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccChh--HH----HHcc-----------------------------CCChhh-------------------
Q psy17386 160 VFYQLVEAAQYSSS--IN----KEIM-----------------------------HYTSEE------------------- 185 (276)
Q Consensus 160 IFYqllaG~~~~~~--l~----~~~~-----------------------------~~~~~d------------------- 185 (276)
||||||+|+++++. |. +.|+ ||+++|
T Consensus 261 IFYqllag~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~dD~~~f~~~~~A~~~lg~~~~e~~~i~~ilaaILhLGni~F 340 (1080)
T 2dfs_A 261 IFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLLGISDSYQMGIFRILAGILHLGNVEF 340 (1080)
T ss_dssp HHHHHHHTTTSSGGGGTCCCCTTTCTTTSTTSCCSCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred hHHHHHcCCChHHHHHccCCCHHhcCcccCCCCCCCCCccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceE
Confidence 99999999875421 00 1111 222211
Q ss_pred ----------------------------------------------------------hhhh------hhHHHHHHHHhh
Q psy17386 186 ----------------------------------------------------------KSHV------IWVFAWLVNHIN 201 (276)
Q Consensus 186 ----------------------------------------------------------~rda------~~LF~wlv~~iN 201 (276)
+||| ++||+|||.+||
T Consensus 341 ~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~i~~~~~~~qa~~~rdalak~lY~~LF~wlV~~iN 420 (1080)
T 2dfs_A 341 ASRDSDSCAIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATATETYIKPISKLHAINARDALAKHIYANLFNWIVDHVN 420 (1080)
T ss_dssp EEETTTEEECCSSCHHHHHHHHHHTCCHHHHHHHHHEEEECC----EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCcceeecCChHHHHHHHHHhCCCHHHHHHHhcccEEEeCCceEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4565 999999999999
Q ss_pred hccCCCCCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCch
Q psy17386 202 TCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPRL 266 (276)
Q Consensus 202 ~~l~~~~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~~ 266 (276)
++|.++.+...+||||||||||+|+.|||||||||||||||||+||++||+.||+||.+|||+|.
T Consensus 421 ~~l~~~~~~~~~IgvLDI~GFE~f~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~ 485 (1080)
T 2dfs_A 421 KALHSTVKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWT 485 (1080)
T ss_dssp HHHCCSSCCCEEEEEEEECCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred HhhccccccCceEEeeccCCccccCcCCHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhcCCccc
Confidence 99987766789999999999999999999999999999999999999999999999999999874
No 9
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=100.00 E-value=4.9e-95 Score=757.65 Aligned_cols=264 Identities=51% Similarity=0.792 Sum_probs=242.4
Q ss_pred CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
||+|++||+||||+.+|+|+++++.+|+++.+.++|||||+||+.||+.|+..++||||||||||||||||++|+||+||
T Consensus 117 Ty~G~ilvavNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i~~yl 196 (1010)
T 1g8x_A 117 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYL 196 (1010)
T ss_dssp EEETTEEEEECCSSCCSCCSHHHHHHHTTCCTTTSCCCHHHHHHHHHHHHHHHTCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eccCceeEEecCCccccCCCHHHHHHhcCCCccCCCccHHHHHHHHHHHHHhcCCCeEEEEeCCCCCCcchHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCc----chHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccCCCCC
Q psy17386 81 CSVTSNVS----TWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGER 156 (276)
Q Consensus 81 ~~~~~~~~----~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~~~Er 156 (276)
+.++++.. ..++++|++++|||||||||||++|+||||||||++|+|+.+|.|+||+|.+||||||||+.|++|||
T Consensus 197 a~~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~i~F~~~g~i~Ga~i~~yLLEksRvv~q~~~ER 276 (1010)
T 1g8x_A 197 ASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSEFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQSETER 276 (1010)
T ss_dssp HHHHCCCCTTTSSHHHHHHHHHHHHHHHHHEECCSSCTTEECSEEEEEEEECTTSCEEEEEEEEECCCGGGGTCCCTTCC
T ss_pred HHhcccCCCcccchHHHHHHHHHHHHHHhCCCcCCCCCCccccceEEEEEECCCCCCcceEEEEEEcCCceeeeecCCCC
Confidence 99987542 57899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHhhcccChh--HH----HHcc-----------------------------CCChhh----------------
Q psy17386 157 NYHVFYQLVEAAQYSSS--IN----KEIM-----------------------------HYTSEE---------------- 185 (276)
Q Consensus 157 nfHIFYqllaG~~~~~~--l~----~~~~-----------------------------~~~~~d---------------- 185 (276)
|||||||||+|++++.. +. +.|+ ||+++|
T Consensus 277 nfHIFYqll~g~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~dD~~~f~~~~~A~~~lg~~~~e~~~i~~ilaaILhLGn 356 (1010)
T 1g8x_A 277 NYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDEDEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGN 356 (1010)
T ss_dssp CBHHHHHHHHHCCHHHHHHHTCCCGGGCGGGSSSSCCCCBTCCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cchhHHHHHcCCCHHHHHHhCCCChHhcchhcCCCccccCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcc
Confidence 99999999999975311 00 1111 222211
Q ss_pred ------------------------------------------------------------hhhh------hhHHHHHHHH
Q psy17386 186 ------------------------------------------------------------KSHV------IWVFAWLVNH 199 (276)
Q Consensus 186 ------------------------------------------------------------~rda------~~LF~wlv~~ 199 (276)
+||| ++||+|||.+
T Consensus 357 i~F~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~v~~~~~~~qa~~~rdalak~lY~~LF~wlV~~ 436 (1010)
T 1g8x_A 357 IKFEKGAGEGAVLKDKTALNAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKK 436 (1010)
T ss_dssp CCCBCCTTSSCBCSCCHHHHHHHHHHTSCHHHHHHHHHSCEEESSSSEEECCCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEecCCCccccCChHHHHHHHHHHCCCHHHHHHHHhCcEEEeCCeeEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4565 9999999999
Q ss_pred hhhccCCCCCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCc
Q psy17386 200 INTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPR 265 (276)
Q Consensus 200 iN~~l~~~~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~ 265 (276)
||++|.++. ...+||||||||||+|+.|||||||||||||||||+|+++||+.||+||.+|||+|
T Consensus 437 IN~~l~~~~-~~~~IgvLDI~GFE~f~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w 501 (1010)
T 1g8x_A 437 INNVLCSER-KAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINW 501 (1010)
T ss_dssp HHHHHCCSS-CSEEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHhcCCC-cCceeeeccCcccccCCcCcHHHHHHHhhhHHHHHHHHHHhhHHHHHHhhccCCCc
Confidence 999998655 67899999999999999999999999999999999999999999999999999987
No 10
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=100.00 E-value=1.5e-95 Score=761.61 Aligned_cols=265 Identities=48% Similarity=0.732 Sum_probs=241.3
Q ss_pred CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
||+|++||+||||+.+|+|+++++.+|+++.+.++|||||+||+.||+.|+..++||||||||||||||||++|+||+||
T Consensus 91 Ty~G~ilvavNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i~~yl 170 (995)
T 2ycu_A 91 TYSGLFCVVINPYKQLPIYTEAIVEMYRGKKRHEVPPHVYAVTEGAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYL 170 (995)
T ss_dssp EEETTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECBTTSSHHHHHHHHHHHH
T ss_pred eecCceeeeeCCccccCCCCHHHHHHhcCCccCCCCchHHHHhHHHHHHHHhcCCCcEEEecCCCCCCchhhHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCc--------chHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeecccccccccC
Q psy17386 81 CSVTSNVS--------TWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQS 152 (276)
Q Consensus 81 ~~~~~~~~--------~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEksRV~~~~ 152 (276)
+.++++.. ..++++|++++|||||||||||++|+||||||||++|+|+.+|.|+||+|.+||||||||+.|+
T Consensus 171 a~~~~~~~~~~~~~~~~~ie~~il~~npiLEAFGNAkT~rN~NSSRFGK~i~i~F~~~g~i~Ga~i~~yLLEksRvv~q~ 250 (995)
T 2ycu_A 171 AHVASSPKGRKEPGVPGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAGYIVGANIETYLLEKSRAIRQA 250 (995)
T ss_dssp HHHSCCSSSCSSSCCCC-CCSTTTSHHHHHHHHHEECCSSCTTEESSEEEEEEEECTTSCEEEEEEEEECCCGGGGTCCC
T ss_pred HHhcccCCccccccccccHHHHHHHHHHHHHHhcCccCCCCCCCCccceEEEEEECCCCCEeeeEEEEEeccCCeeeccC
Confidence 99987532 4678899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHhhcccChh--HH----HHcc---------------------------CCChhh--------------
Q psy17386 153 PGERNYHVFYQLVEAAQYSSS--IN----KEIM---------------------------HYTSEE-------------- 185 (276)
Q Consensus 153 ~~ErnfHIFYqllaG~~~~~~--l~----~~~~---------------------------~~~~~d-------------- 185 (276)
+||||||||||||+|++++.. +. +.|+ ||+++|
T Consensus 251 ~~ERnfHIFYqll~g~~~~~~~~l~L~~~~~y~yl~~~~~~~~~dD~~~f~~~~~A~~~lg~~~~e~~~i~~ilaaILhl 330 (995)
T 2ycu_A 251 KDECSFHIFYQLLGGAGEQLKADLLLEPCSHYRFLTNGPSSSPGQERELFQETLESLRVLGFSHEEIISMLRMVSAVLQF 330 (995)
T ss_dssp TTCCCBHHHHHHHHHCCHHHHHHTTCCCGGGCTTSTTCSCSSTTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHG
T ss_pred CCCCcchhHHHHHcCCCHHHHHHcCCCChHHcccccCCccccCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999875311 00 1111 222211
Q ss_pred ---------------------------------------------------------------hhhh------hhHHHHH
Q psy17386 186 ---------------------------------------------------------------KSHV------IWVFAWL 196 (276)
Q Consensus 186 ---------------------------------------------------------------~rda------~~LF~wl 196 (276)
+||| ++||+||
T Consensus 331 Gni~F~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e~v~~~~~~~qa~~~rdalak~lY~~LF~wl 410 (995)
T 2ycu_A 331 GNIALKRERNTDQATMPDNTAAQKLCRLLGLGVTDFSRALLTPRIKVGRDYVQKAQTKEQADFALEALAKATYERLFRWL 410 (995)
T ss_dssp GGCCCEECSSSCCEECSCCHHHHHHHHHTTCCHHHHHHHHHSCEEESSSSEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEeecCCCcccccCChHHHHHHHHHHCCCHHHHHHHhcCcEEEcCCceecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4565 9999999
Q ss_pred HHHhhhccCCCCC-CcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCc
Q psy17386 197 VNHINTCTNPGQD-STRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPR 265 (276)
Q Consensus 197 v~~iN~~l~~~~~-~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~ 265 (276)
|.+||++|.+... ...+||||||||||+|+.|||||||||||||||||+|+++||+.||+||.+|||+|
T Consensus 411 V~~iN~~l~~~~~~~~~~IgvLDI~GFE~f~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w 480 (995)
T 2ycu_A 411 VLRLNRALDRSPRQGASFLGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPW 480 (995)
T ss_dssp HHHHHHHHCCCSCCCSEEEEEEECCCBCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCC
T ss_pred HHHHHHHhcCCCCCccceEEEeccccccccccchHHHHHHHhhHHHHHHHHHHhhhHHHHHHHhccCCCc
Confidence 9999999986554 67899999999999999999999999999999999999999999999999999987
No 11
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=100.00 E-value=1.1e-94 Score=768.49 Aligned_cols=264 Identities=47% Similarity=0.742 Sum_probs=240.0
Q ss_pred CcccCeEEEecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 1 Ty~G~~LiavNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
||+|++||+||||+++|+|+++++..|+++.+.++|||||+||+.||+.|+..++||||||||||||||||++|+||+||
T Consensus 114 T~~g~~li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~aia~~ay~~m~~~~~~Q~i~isGeSGaGKTe~~k~~~~yl 193 (1184)
T 1i84_S 114 TYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYL 193 (1184)
T ss_dssp EEETTEEEEECCCSCCSCCSHHHHHHHSSCCSSSSCCCHHHHHHHHHHHHHHHTCCEEEECCCSTTSSTTHHHHHHHHHH
T ss_pred EecCcceeeeCCCcCCCCCCHHHHHHhcCcccccCCccHhhhHHHHHHHHHhcCCCcEEEEecCCCCCccHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCC---------------cchHHHHHHHhHHHHHHhcCCccccCCCCCcccccEEEEecCCCceeeeeeeeeeccc
Q psy17386 81 CSVTSNV---------------STWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQ 145 (276)
Q Consensus 81 ~~~~~~~---------------~~~~~~~i~~a~~ILeaFGnAkT~~N~nSSRfgk~~~l~f~~~g~i~ga~i~~yLLEk 145 (276)
+.++++. ...++++|++++|||||||||||++|+||||||||++|+|+.+|.|+||+|.+|||||
T Consensus 194 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~npileaFGnAkT~rN~NSSRfgk~~~i~f~~~g~i~ga~i~~ylLEk 273 (1184)
T 1i84_S 194 AVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEK 273 (1184)
T ss_dssp HHHSSCCSCC------CTTCCCCCSHHHHHHHHHHHHTTTTEEEETTEEEEECSCEEEEEEECSSSCEEEEEEEECCCCC
T ss_pred HHHhcCCCcccccccccccccccchHHHHHHHHHHHHHHhcCCcCCCCccccccceeEEEEECCCCCEeeeEEeEeecCC
Confidence 9998752 2578999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCchHHHHHHHhhcccChhHHHH--------cc----------------------------CCChhh----
Q psy17386 146 SRITFQSPGERNYHVFYQLVEAAQYSSSINKE--------IM----------------------------HYTSEE---- 185 (276)
Q Consensus 146 sRV~~~~~~ErnfHIFYqllaG~~~~~~l~~~--------~~----------------------------~~~~~d---- 185 (276)
|||++|++||||||||||||+|++++ +++. |+ ||++++
T Consensus 274 sRv~~q~~~ErnfhiFYqll~g~~~~--~~~~l~l~~~~~~~yl~~~~~~~~~~~d~~~f~~~~~a~~~lg~~~~e~~~i 351 (1184)
T 1i84_S 274 SRAIRQAKDERTFHIFYYLIAGASEQ--MRNDLLLEGFNNYTFLSNGHVPIPAQQDDEMFQETLEAMTIMGFTEEEQTSI 351 (1184)
T ss_dssp GGGSCCCTTCCCCTHHHHHHHHCCHH--HHHHTTCCCTTSCSSCTTSSCCCTTCCHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred ceeeeecCCCCchhhHHHHHcCCCHH--HHHHcCCCChHhCCccCCCCcCCCCCChHHHHHHHHHHHHhceeCHHHHHHH
Confidence 99999999999999999999999742 2211 11 222211
Q ss_pred -------------------------------------------------------------------------hhhh---
Q psy17386 186 -------------------------------------------------------------------------KSHV--- 189 (276)
Q Consensus 186 -------------------------------------------------------------------------~rda--- 189 (276)
+|||
T Consensus 352 ~~ilaaiLhlGni~f~~~~~~~~~~~~~~~~~~~~a~lLg~~~~~l~~~l~~~~~~~~~e~~~~~~~~~~a~~~rdalak 431 (1184)
T 1i84_S 352 LRVVSSVLQLGNIVFKKERNTDQASMPDNTAAQKVCHLMGINVTDFTRSILTPRIKVGRDVVQKAQTKEQADFAIEALAK 431 (1184)
T ss_dssp HHHHHHHHHTTTCCCBCCTTTSCCBCCCSHHHHHHHHHTTSCHHHHHHHHHSCCCCCTTSCCCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCceeeccCCCcCcccCChHHHHHHHHHHCCCHHHHHHHhcCcEEEeCCceEecCCCHHHHHHHHHHHHH
Confidence 4565
Q ss_pred ---hhHHHHHHHHhhhccCCC-CCCcceeeeeecccccccCCCcHHHHHhhhhhhHHHHHHHHHhhHHHHHHHhhhCCCc
Q psy17386 190 ---IWVFAWLVNHINTCTNPG-QDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKPR 265 (276)
Q Consensus 190 ---~~LF~wlv~~iN~~l~~~-~~~~~~IgiLDi~GFE~~~~NsfeQl~iNy~NEkLq~~f~~~~f~~eq~eY~~E~~~~ 265 (276)
++||+|||.+||.+|.+. .....+||||||||||+|+.||||||||||||||||||||++||+.||+||.+|||+|
T Consensus 432 ~lY~~lF~wlv~~iN~~l~~~~~~~~~~IgvLDi~GFE~f~~NsfeQlciNy~nEkLq~~f~~~~f~~eq~ey~~Egi~~ 511 (1184)
T 1i84_S 432 AKFERLFRWILTRVNKALDKTKRQGASFLGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEW 511 (1184)
T ss_dssp HHHHHHHHHHHHHHTTTCC------CEEEEEEECCCCCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHhhCCCccCCcceEEEeecCCcCCCCcchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCc
Confidence 999999999999999865 4467899999999999999999999999999999999999999999999999999998
Q ss_pred h
Q psy17386 266 L 266 (276)
Q Consensus 266 ~ 266 (276)
.
T Consensus 512 ~ 512 (1184)
T 1i84_S 512 N 512 (1184)
T ss_dssp C
T ss_pred c
Confidence 3
No 12
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.46 E-value=0.0016 Score=52.42 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=27.6
Q ss_pred hHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 50 LQNLDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 50 m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.+..+....+++.|++|+|||..++.+.+.+..
T Consensus 37 ~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 37 VLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp HHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHhcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 344466788999999999999999999988754
No 13
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.31 E-value=0.0071 Score=48.64 Aligned_cols=63 Identities=11% Similarity=0.104 Sum_probs=39.6
Q ss_pred CCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 18 IYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 18 ~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
-|..+..++|+.....++.-+-- .. +.....+.......|++.|++|+|||..++.+.+.+..
T Consensus 7 ~~~~~l~~~~~~~~~~~~~g~~~-~~-~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 7 KYSRDLTALARAGKLDPVIGRDT-EI-RRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp TTEEEHHHHHHTTCSCCCCSCHH-HH-HHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccccchhhcchH-HH-HHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34444555666554444332221 11 22233334466789999999999999999999888754
No 14
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.30 E-value=0.0038 Score=51.24 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=25.2
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
..+.+++.|++|+|||+.++.+...+..
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 64 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYE 64 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4688999999999999999999998863
No 15
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.11 E-value=0.0038 Score=52.38 Aligned_cols=32 Identities=25% Similarity=0.303 Sum_probs=24.0
Q ss_pred HhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 49 SLQNLDVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 49 ~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
.|........|++.|.+|||||+.++.+...+
T Consensus 22 ~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 22 SMMTGEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred hhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 35555667899999999999999999998876
No 16
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.02 E-value=0.006 Score=51.12 Aligned_cols=30 Identities=23% Similarity=0.169 Sum_probs=26.5
Q ss_pred hcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 52 NLDVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 52 ~~~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.......|++.|.||||||+.++.+...|.
T Consensus 21 ~~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 21 LDQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp HTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345678999999999999999999999885
No 17
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.97 E-value=0.0097 Score=49.99 Aligned_cols=38 Identities=18% Similarity=0.065 Sum_probs=30.4
Q ss_pred HHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 45 AAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 45 ~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
...+.+......+.+++.|++|+|||+.++.+.+.+..
T Consensus 41 ~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 41 GALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp HHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34445555557899999999999999999999888764
No 18
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.84 E-value=0.0052 Score=49.95 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=22.2
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...|+++|.||||||+.++.+.+.|
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999988865
No 19
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.83 E-value=0.0094 Score=50.29 Aligned_cols=29 Identities=24% Similarity=0.341 Sum_probs=25.9
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.+.+.|.|.|.||||||+.++.+...+..
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 56789999999999999999999998863
No 20
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.81 E-value=0.0046 Score=52.41 Aligned_cols=24 Identities=38% Similarity=0.441 Sum_probs=21.1
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL~ 81 (276)
-|||+|.||||||+.++.+++-+.
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 399999999999999999987653
No 21
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.80 E-value=0.0053 Score=50.75 Aligned_cols=27 Identities=15% Similarity=0.331 Sum_probs=23.2
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
..+.|+++|.||||||+.++.++..+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 346799999999999999999988753
No 22
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.73 E-value=0.011 Score=49.22 Aligned_cols=26 Identities=27% Similarity=0.287 Sum_probs=24.0
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 57 QSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
+.|++.|++|+|||..++.+...+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 89999999999999999999988764
No 23
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.70 E-value=0.0057 Score=50.30 Aligned_cols=30 Identities=17% Similarity=0.288 Sum_probs=23.7
Q ss_pred hHhcCCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386 50 LQNLDVNQSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 50 m~~~~~~QsIiisGeSGsGKTe~~k~il~y 79 (276)
|..-...+.|++.|.+|||||+.++.+...
T Consensus 3 m~~i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 3 MTDDLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp ---CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred ccCCCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 444556789999999999999999988765
No 24
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.67 E-value=0.0056 Score=50.79 Aligned_cols=25 Identities=36% Similarity=0.444 Sum_probs=22.4
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
+.|+++|.||||||+.++.++..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4689999999999999999998765
No 25
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.56 E-value=0.0072 Score=50.89 Aligned_cols=26 Identities=38% Similarity=0.491 Sum_probs=22.8
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.+.+++.|.||||||+..+.++..+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 46799999999999999999999764
No 26
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.47 E-value=0.0096 Score=48.12 Aligned_cols=26 Identities=27% Similarity=0.212 Sum_probs=22.8
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
-|-|+++|.+|||||+.++.+-+.|-
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 48999999999999999999888753
No 27
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.41 E-value=0.0096 Score=49.38 Aligned_cols=26 Identities=35% Similarity=0.460 Sum_probs=22.9
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
..+.|.+.|.||||||+.++.+...+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 35689999999999999999998875
No 28
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.39 E-value=0.0097 Score=47.70 Aligned_cols=24 Identities=13% Similarity=0.072 Sum_probs=21.4
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.|+++|.+|||||+.++.+.+.|-
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999887763
No 29
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.39 E-value=0.016 Score=51.38 Aligned_cols=37 Identities=19% Similarity=0.314 Sum_probs=29.9
Q ss_pred HHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 46 AYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 46 Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
+++.+. -...+.+.+.|.||||||+..+.++.++...
T Consensus 16 vl~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~ 52 (261)
T 2eyu_A 16 KVLELC-HRKMGLILVTGPTGSGKSTTIASMIDYINQT 52 (261)
T ss_dssp HHHHGG-GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH
T ss_pred HHHHHh-hCCCCEEEEECCCCccHHHHHHHHHHhCCCC
Confidence 444554 5677899999999999999999999987543
No 30
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.35 E-value=0.02 Score=46.94 Aligned_cols=36 Identities=22% Similarity=0.223 Sum_probs=27.9
Q ss_pred HHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 46 AYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 46 Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
..+..+.......+++.|++|+|||..++.+.+.+.
T Consensus 28 ~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 28 RLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp HHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 344444555555699999999999999999988864
No 31
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.32 E-value=0.012 Score=48.13 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=23.1
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
....|+++|.+|||||+.++.+.+.+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999988776
No 32
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.30 E-value=0.012 Score=49.17 Aligned_cols=26 Identities=31% Similarity=0.321 Sum_probs=23.2
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
....|++.|.+|||||+.++.+.+.|
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999998876
No 33
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.29 E-value=0.0089 Score=50.60 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=24.2
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.....|+++|.||||||+.++.+.+.+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3457899999999999999999988764
No 34
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.27 E-value=0.011 Score=49.42 Aligned_cols=26 Identities=31% Similarity=0.348 Sum_probs=22.7
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.-.|+|+|.+|||||+.++.+.+.+-
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34699999999999999999988763
No 35
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.27 E-value=0.016 Score=46.88 Aligned_cols=28 Identities=25% Similarity=0.230 Sum_probs=25.0
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
..+.+++.|++|+|||+.++.+...+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6789999999999999999999888753
No 36
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.22 E-value=0.0098 Score=49.95 Aligned_cols=27 Identities=30% Similarity=0.317 Sum_probs=23.8
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
+...|+++|.||||||+.++.+.+.+.
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 456799999999999999999998873
No 37
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.21 E-value=0.012 Score=48.08 Aligned_cols=26 Identities=27% Similarity=0.552 Sum_probs=23.2
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
..-|+++|.+|||||+.++.+.+.|.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999998875
No 38
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.21 E-value=0.0097 Score=49.33 Aligned_cols=26 Identities=35% Similarity=0.364 Sum_probs=23.2
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
....|++.|.||||||+.++.+...+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45689999999999999999998876
No 39
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.20 E-value=0.029 Score=46.35 Aligned_cols=30 Identities=23% Similarity=0.423 Sum_probs=25.1
Q ss_pred cCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 53 LDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 53 ~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.+.+..+++.|++|+|||+.++.+.+.+..
T Consensus 42 ~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 42 GRIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp TCCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 344568999999999999999999887753
No 40
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.15 E-value=0.016 Score=47.03 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=22.8
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
....|++.|.+|||||+.++.+.+.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 35689999999999999999988765
No 41
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.08 E-value=0.013 Score=49.32 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=23.7
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.+.+.+.|.|+||||||+..+.+...+.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4567899999999999999999888753
No 42
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.08 E-value=0.014 Score=47.70 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=23.1
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
...|++.|.+|||||+.++.+.+.|-
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46799999999999999999988763
No 43
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.05 E-value=0.022 Score=48.05 Aligned_cols=31 Identities=16% Similarity=0.126 Sum_probs=26.7
Q ss_pred HhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 51 QNLDVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 51 ~~~~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
........|++.|.+|||||+.++.+.+.|.
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3345668899999999999999999999886
No 44
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.94 E-value=0.029 Score=50.27 Aligned_cols=45 Identities=16% Similarity=0.034 Sum_probs=32.3
Q ss_pred CchhHHHHHHHHHhHhcC--CCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 37 PHVFALAEAAYSSLQNLD--VNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 37 PHifavA~~Ay~~m~~~~--~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
.|..+. .+.+.+.... ....+++.|++|+|||+.++.+.+.+...
T Consensus 18 ~~~~a~--~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 18 GNRLAY--EVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp TTHHHH--HHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred cHHHHH--HHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 454433 3344444443 45789999999999999999999988643
No 45
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.94 E-value=0.018 Score=46.97 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=24.2
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
+...|+++|.+|||||+.++.+.+.|.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999999999874
No 46
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.90 E-value=0.014 Score=47.57 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=22.4
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.|++.|-+|||||+.++.+.+.|.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999876
No 47
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.86 E-value=0.018 Score=49.74 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=23.6
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
...|++.|.+|||||+.++.+.+.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 57899999999999999999998764
No 48
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.84 E-value=0.017 Score=48.28 Aligned_cols=28 Identities=21% Similarity=0.200 Sum_probs=23.9
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.+...|.|.|.+|||||+.++.+...+.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3457899999999999999999998864
No 49
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.84 E-value=0.016 Score=49.51 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=24.1
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
....|+|+|.||||||+.++.+++.+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999998764
No 50
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.84 E-value=0.016 Score=49.97 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=23.7
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
..+.++|+|.||||||+..+.++..+.
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 457899999999999999999988764
No 51
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.83 E-value=0.051 Score=47.63 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=24.5
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
..+..+++.|++|+|||+.++.+.+.+
T Consensus 48 ~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 48 VTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999998887
No 52
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.82 E-value=0.015 Score=49.68 Aligned_cols=26 Identities=35% Similarity=0.361 Sum_probs=23.5
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
..+.+.|.|+||||||+..+.++..+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 46789999999999999999999876
No 53
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.81 E-value=0.02 Score=46.71 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=22.4
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...|+++|.+|||||+.++.+-+.|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998876
No 54
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.79 E-value=0.015 Score=46.21 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=19.3
Q ss_pred eEEEeCCCCCChhHHHHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL 80 (276)
.|+++|.+|||||+.++.+ +.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHC
Confidence 5899999999999999988 543
No 55
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.75 E-value=0.016 Score=46.66 Aligned_cols=25 Identities=28% Similarity=0.419 Sum_probs=21.7
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
..|++.|.+|||||+.++.+-..+-
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5699999999999999998877653
No 56
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.73 E-value=0.02 Score=47.04 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=24.9
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
+...|++.|.+|||||+.++.+.+.|..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4567999999999999999999998864
No 57
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.69 E-value=0.021 Score=47.54 Aligned_cols=23 Identities=43% Similarity=0.658 Sum_probs=21.0
Q ss_pred eEEEeCCCCCChhHHHHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL 80 (276)
.+.+.|++|||||+..|.+...+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 58
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.67 E-value=0.073 Score=46.88 Aligned_cols=57 Identities=14% Similarity=0.140 Sum_probs=37.6
Q ss_pred HHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 23 KVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 23 ~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
..++|+.....++.-|-- +-+..+.+...++...+++.|++|+|||+.++.+.+.+.
T Consensus 15 ~~~k~~p~~~~~~~g~~~--~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 15 WVEKYRPQRLDDIVGQEH--IVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp HHHHTCCCSTTTCCSCHH--HHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred hhhccCCCCHHHhhCCHH--HHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 345566555444433321 223344555556555699999999999999999998864
No 59
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.67 E-value=0.04 Score=49.63 Aligned_cols=30 Identities=27% Similarity=0.234 Sum_probs=26.4
Q ss_pred cCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 53 LDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 53 ~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
..+...|.|.|.||||||+.++.+.+.|..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 346678999999999999999999999864
No 60
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.66 E-value=0.023 Score=55.90 Aligned_cols=29 Identities=24% Similarity=0.334 Sum_probs=25.7
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.+.+.|++.|.||||||+.++.+...|..
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 45688999999999999999999998863
No 61
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.63 E-value=0.054 Score=49.01 Aligned_cols=57 Identities=14% Similarity=0.095 Sum_probs=36.7
Q ss_pred HHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 23 KVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 23 ~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.+.+|+-....+...|-- +-+..+.....++-..+++.|++|+|||+.++.+.+.+.
T Consensus 15 ~~~k~rp~~~~~~~g~~~--~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 15 WVEKYRPETLDEVYGQNE--VITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp HHHHTCCSSGGGCCSCHH--HHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred hHHHhCCCcHHHhcCcHH--HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 455666554444433322 223344445555433499999999999999999999875
No 62
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.58 E-value=0.022 Score=45.80 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.4
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.|+++|.+|||||+.++.+-+.|-
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 599999999999999999888753
No 63
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.58 E-value=0.021 Score=51.14 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=23.2
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
....|+++|.||||||+.++.+.+.+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998865
No 64
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.55 E-value=0.025 Score=46.38 Aligned_cols=27 Identities=33% Similarity=0.434 Sum_probs=24.8
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.+.|++|||||+.+|.+...+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 567889999999999999999999987
No 65
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.54 E-value=0.04 Score=54.00 Aligned_cols=50 Identities=20% Similarity=0.278 Sum_probs=34.9
Q ss_pred CCCCCchhH---HHHHHHHHhH-hcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 33 GSQEPHVFA---LAEAAYSSLQ-NLDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 33 ~~~pPHifa---vA~~Ay~~m~-~~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
+..|||-|. |+....+.+. ..+....|+++|-+|||||+.++.+.+.|..
T Consensus 345 g~~~p~~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 345 GRKLPEWFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp TCCCCTTTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCccccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 445677776 5533322221 2334578999999999999999999998764
No 66
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.54 E-value=0.022 Score=46.87 Aligned_cols=24 Identities=33% Similarity=0.361 Sum_probs=21.9
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.|++.|.+|||||+.++.+.+.|-
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999999874
No 67
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.54 E-value=0.023 Score=45.80 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=20.3
Q ss_pred ceEEEeCCCCCChhHHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFILQ 78 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~ 78 (276)
..|++.|.+|||||+.++.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4699999999999999999887
No 68
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.53 E-value=0.022 Score=46.88 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.4
Q ss_pred ceEEEeCCCCCChhHHHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~y 79 (276)
+.|++.|.+|||||+.++.+...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 46899999999999999999763
No 69
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.49 E-value=0.024 Score=45.48 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=21.4
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.|+++|.+|||||+.++.+-+.|-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999988763
No 70
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.48 E-value=0.025 Score=47.43 Aligned_cols=29 Identities=28% Similarity=0.153 Sum_probs=25.1
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.+...|.++|.||||||+.++.+...+..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45678999999999999999999988753
No 71
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.47 E-value=0.011 Score=49.27 Aligned_cols=27 Identities=26% Similarity=0.231 Sum_probs=24.4
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 57 QSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
+.|.|.|+||||||+.++.++.++...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 568899999999999999999998754
No 72
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.46 E-value=0.037 Score=50.20 Aligned_cols=38 Identities=26% Similarity=0.328 Sum_probs=30.8
Q ss_pred HHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 45 AAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 45 ~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.+.+.+.......+++|+|++|+|||..++.+.+.+..
T Consensus 34 ~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~ 71 (384)
T 2qby_B 34 IAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEE 71 (384)
T ss_dssp HHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34455555667789999999999999999999998754
No 73
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.44 E-value=0.027 Score=47.45 Aligned_cols=25 Identities=36% Similarity=0.424 Sum_probs=22.3
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...|.|.|.+|||||+.++.+.+.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998865
No 74
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.43 E-value=0.01 Score=49.60 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=22.5
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 58 SCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.|+|.|.+|||||+.++.+.++|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4899999999999999999998753
No 75
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.42 E-value=0.023 Score=45.22 Aligned_cols=26 Identities=15% Similarity=0.529 Sum_probs=21.9
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~y 79 (276)
..+..|++.||+|+|||..++.+-+.
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 45678999999999999999877554
No 76
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.42 E-value=0.025 Score=46.10 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=22.3
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...|++.|.+|||||+.++.+.+.|
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998765
No 77
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.42 E-value=0.024 Score=51.15 Aligned_cols=54 Identities=15% Similarity=0.179 Sum_probs=33.4
Q ss_pred HhhcCcCCCCCCchhHHHHHHHHHhH-hcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 26 EYHGAKMGSQEPHVFALAEAAYSSLQ-NLDVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 26 ~y~~~~~~~~pPHifavA~~Ay~~m~-~~~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
+|+.+...++.-|-- +.++.+... ..++-..+++.|++|+|||+.++.+.+.+.
T Consensus 7 kyrP~~~~~~vg~~~--~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 7 KYRPKSLNALSHNEE--LTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp TTCCCSGGGCCSCHH--HHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHS
T ss_pred ccCCCCHHHhcCCHH--HHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 444444444443322 223444444 444333399999999999999999998653
No 78
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.40 E-value=0.025 Score=46.17 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.3
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.|+++|.+|||||+.++.+-+.|-
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 599999999999999999988653
No 79
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.40 E-value=0.045 Score=47.77 Aligned_cols=28 Identities=21% Similarity=0.148 Sum_probs=24.5
Q ss_pred cCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 53 LDVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 53 ~~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
......+++.|++|+|||..++.+.+.+
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 4567899999999999999999988874
No 80
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.38 E-value=0.046 Score=49.49 Aligned_cols=37 Identities=16% Similarity=0.197 Sum_probs=28.7
Q ss_pred HHHHhHhcCCCc--eEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 46 AYSSLQNLDVNQ--SCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 46 Ay~~m~~~~~~Q--sIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
+........... +++|+|++|+|||..++.+.+.+..
T Consensus 32 ~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~ 70 (389)
T 1fnn_A 32 LLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKD 70 (389)
T ss_dssp HHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhh
Confidence 334444445566 8999999999999999999988743
No 81
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.37 E-value=0.026 Score=45.92 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.9
Q ss_pred eEEEeCCCCCChhHHHHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL 80 (276)
.|+|.|.+|||||+.++.+-+.|
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 59999999999999999988765
No 82
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.36 E-value=0.032 Score=46.57 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=24.1
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 57 QSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
..|+++|.||||||+.++.+++.|...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 579999999999999999999988653
No 83
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.35 E-value=0.042 Score=52.15 Aligned_cols=37 Identities=27% Similarity=0.298 Sum_probs=30.0
Q ss_pred HHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 45 AAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 45 ~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.+++.+. ......|+++|.+|||||+..+.++.++..
T Consensus 157 ~~L~~l~-~~~ggii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 157 DNFRRLI-KRPHGIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp HHHHHHH-TSSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred HHHHHHH-HhcCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 3566664 356678999999999999999999998753
No 84
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.35 E-value=0.021 Score=48.60 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=22.4
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
+...|++.|.+|||||+.++.+.+.|
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 44679999999999999999998775
No 85
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.24 E-value=0.041 Score=50.02 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=26.2
Q ss_pred cCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 53 LDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 53 ~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
..+...|.|.|.||||||+.++.|...+..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 356788999999999999999999988764
No 86
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.23 E-value=0.038 Score=51.26 Aligned_cols=37 Identities=22% Similarity=0.465 Sum_probs=28.9
Q ss_pred HHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 46 AYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 46 Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
.++.+.. .....|+++|.+|||||+..+.++.++...
T Consensus 114 ~l~~l~~-~~~g~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 114 VFKRVSD-VPRGLVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp HHHHHHH-CSSEEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-CCCCEEEEECCCCCCHHHHHHHHHhcccCC
Confidence 3455543 344589999999999999999999987654
No 87
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.22 E-value=0.035 Score=45.44 Aligned_cols=21 Identities=33% Similarity=0.379 Sum_probs=18.8
Q ss_pred CCceEEEeCCCCCChhHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKF 75 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~ 75 (276)
+.+.+.+.|+||||||+.+|.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 457899999999999999994
No 88
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.21 E-value=0.029 Score=45.98 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=22.3
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 58 SCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
-|++.|-+|||||+.++.+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3899999999999999999998843
No 89
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.17 E-value=0.042 Score=50.38 Aligned_cols=38 Identities=11% Similarity=0.020 Sum_probs=32.5
Q ss_pred HHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 45 AAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 45 ~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.+.+.....+.+.+|+|+|.+|+|||..++.+++-|..
T Consensus 34 ~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 34 LPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp HHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34555566788999999999999999999999999864
No 90
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.17 E-value=0.026 Score=45.85 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=22.6
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
...|+++|.+|||||+.++.+.+.|-
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999988763
No 91
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.13 E-value=0.051 Score=48.95 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=24.8
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.+...|.|.|.||||||+.++.+...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5567899999999999999999988775
No 92
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.13 E-value=0.031 Score=45.56 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=21.7
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL~ 81 (276)
-|+++|-+|||||+.++.+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999874
No 93
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.12 E-value=0.031 Score=46.27 Aligned_cols=27 Identities=15% Similarity=0.331 Sum_probs=23.8
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
..-|++.|-+|||||+.++.+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 457999999999999999999998754
No 94
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.11 E-value=0.049 Score=51.99 Aligned_cols=58 Identities=17% Similarity=0.205 Sum_probs=38.4
Q ss_pred HHHhhcCcCCCCCCchhHHHH-HHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 24 VCEYHGAKMGSQEPHVFALAE-AAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 24 ~~~y~~~~~~~~pPHifavA~-~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.++|+.....++.-+--.+.. ...+.++...+-.++++.|++|+|||+.++.+.+.+.
T Consensus 17 a~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 17 AARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp HHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred HHHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence 344554444444322222211 4556666777778999999999999999999988763
No 95
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.09 E-value=0.031 Score=46.85 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=20.2
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q psy17386 59 CVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 59 IiisGeSGsGKTe~~k~il~yL 80 (276)
|+++|.+|||||+.++.+.+.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999987765
No 96
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.06 E-value=0.036 Score=45.41 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.9
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
+...|++.|.+|||||+.++.+.+.|
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999998876
No 97
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.02 E-value=0.038 Score=44.96 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=22.0
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
+..|++.|.+|||||+.++.+.+.+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3569999999999999999988775
No 98
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.02 E-value=0.12 Score=46.61 Aligned_cols=57 Identities=16% Similarity=0.218 Sum_probs=35.6
Q ss_pred HHHhhcCcCCCCCCchhHHHHHHHHHhH-hcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 24 VCEYHGAKMGSQEPHVFALAEAAYSSLQ-NLDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 24 ~~~y~~~~~~~~pPHifavA~~Ay~~m~-~~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
..+|+.....++.-+--.+ +..+..+ ..+.+..++++|++|+|||+.++.+.+.+..
T Consensus 7 ~~k~rp~~~~~~vg~~~~~--~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 7 ARKWRPQTFADVVGQEHVL--TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp HHHTCCCSTTTSCSCHHHH--HHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred HHhhCCCchhhccCcHHHH--HHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3455555444443222111 2233333 3445678999999999999999999988753
No 99
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.00 E-value=0.029 Score=46.04 Aligned_cols=26 Identities=19% Similarity=0.274 Sum_probs=23.0
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
...|+++|.+|||||+.++.+.+.|-
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998864
No 100
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.98 E-value=0.12 Score=45.94 Aligned_cols=56 Identities=16% Similarity=0.220 Sum_probs=38.8
Q ss_pred HHHHhhcCcCCCCCCchhHHHHHHHHHhHh-cCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 23 KVCEYHGAKMGSQEPHVFALAEAAYSSLQN-LDVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 23 ~~~~y~~~~~~~~pPHifavA~~Ay~~m~~-~~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
.+++|+.....++.-|--. -+..+.+.. .+.+..+++.|++|+|||..++.+.+.+
T Consensus 16 ~~~k~rP~~~~~ivg~~~~--~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 16 LEQKYRPSTIDECILPAFD--KETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp HHHHSCCCSTTTSCCCHHH--HHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred HHHhhCCCCHHHHhCcHHH--HHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 5677877766666544322 233444444 4456788999999999999999998876
No 101
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.97 E-value=0.026 Score=45.77 Aligned_cols=26 Identities=31% Similarity=0.335 Sum_probs=18.5
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
...|+++|.+|||||+.++.+-+.|-
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999887753
No 102
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.97 E-value=0.037 Score=46.14 Aligned_cols=27 Identities=15% Similarity=0.070 Sum_probs=24.0
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 57 QSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
..|.++|.||||||+.+..+++.|...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 468999999999999999999998754
No 103
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.95 E-value=0.042 Score=45.64 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=24.7
Q ss_pred cCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 53 LDVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 53 ~~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
......|++.|.+|||||+.++.+.+.|-
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44556899999999999999999988763
No 104
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.92 E-value=0.043 Score=47.07 Aligned_cols=28 Identities=25% Similarity=0.321 Sum_probs=24.1
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
..+..|++.|++|+|||..++.+.+.+.
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4567899999999999999999888753
No 105
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.90 E-value=0.028 Score=48.99 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=24.2
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.....|++.|.+|||||+.++.+.+.+-
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3457899999999999999999988763
No 106
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.88 E-value=0.04 Score=51.26 Aligned_cols=31 Identities=19% Similarity=0.394 Sum_probs=26.6
Q ss_pred cCCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 53 LDVNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 53 ~~~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
-...+.|++.|.+|||||+..+.++.++...
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 3456789999999999999999999987643
No 107
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.88 E-value=0.089 Score=47.03 Aligned_cols=56 Identities=18% Similarity=0.166 Sum_probs=35.2
Q ss_pred HHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 24 VCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 24 ~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
..+|+.....++.-|--. -+.....+..+....+++.|++|+|||+.++.+.+.+.
T Consensus 28 ~~k~~p~~~~~i~g~~~~--~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 28 VEKYRPKNLDEVTAQDHA--VTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp HHHTCCSSTTTCCSCCTT--HHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHhhCCHHH--HHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 445654444443322111 13344445555434599999999999999999999875
No 108
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.80 E-value=0.027 Score=50.78 Aligned_cols=30 Identities=23% Similarity=0.434 Sum_probs=26.5
Q ss_pred cCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 53 LDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 53 ~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.....+++|+|++|+|||..++.+.+.+..
T Consensus 41 ~~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 41 GEKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp SCCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 456789999999999999999999998754
No 109
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.80 E-value=0.041 Score=47.51 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=23.0
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
.+..|++.|++|+|||+.++.+...+
T Consensus 44 ~~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 44 IPKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 45689999999999999999988775
No 110
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.75 E-value=0.07 Score=47.03 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=25.3
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.....|++.|++|+|||..++.+.+.+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~ 93 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHR 93 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45568999999999999999999998865
No 111
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.74 E-value=0.042 Score=45.64 Aligned_cols=27 Identities=26% Similarity=0.508 Sum_probs=23.9
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
...|+++|-+|||||+.++.+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 467999999999999999999988754
No 112
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.73 E-value=0.034 Score=46.72 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=20.1
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q psy17386 59 CVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 59 IiisGeSGsGKTe~~k~il~yL 80 (276)
|+++|.+|||||+.++.+.+.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999987765
No 113
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.73 E-value=0.036 Score=46.93 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=21.6
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~y 79 (276)
....|+|+|.||+|||+.+..+++.
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 4578999999999999998887763
No 114
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.72 E-value=0.039 Score=45.44 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=21.7
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~y 79 (276)
+...|.|+|.+|||||+.++.+.+.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4567999999999999999988775
No 115
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.72 E-value=0.043 Score=47.88 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=23.3
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
....|.|.|.||||||+.+|.+.+.|-
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 446899999999999999999987654
No 116
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.71 E-value=0.094 Score=49.09 Aligned_cols=47 Identities=13% Similarity=0.164 Sum_probs=36.5
Q ss_pred CCCCchhHHHHHHHHHhHh-cCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 34 SQEPHVFALAEAAYSSLQN-LDVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 34 ~~pPHifavA~~Ay~~m~~-~~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
.+-|++......+++.+.. -...+.|++.|.+|+|||+.++.+...+
T Consensus 146 ~l~~~~~~~~~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 146 CLLPKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTSTTHHHHHHHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3456666666677777643 4567899999999999999999998864
No 117
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.71 E-value=0.026 Score=48.13 Aligned_cols=26 Identities=35% Similarity=0.404 Sum_probs=17.0
Q ss_pred CCceEEEeCCCCCChhHHHHHHH-HHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFIL-QYL 80 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il-~yL 80 (276)
..+.|.++|.||||||+.++.+. ..+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 45789999999999999999998 765
No 118
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.70 E-value=0.045 Score=45.46 Aligned_cols=28 Identities=25% Similarity=0.487 Sum_probs=24.4
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
+..-|+++|-+|||||+.++.+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3567999999999999999999988754
No 119
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.69 E-value=0.028 Score=50.59 Aligned_cols=30 Identities=33% Similarity=0.479 Sum_probs=26.3
Q ss_pred cCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 53 LDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 53 ~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
....+.++|+|++|+|||+.++.+.+.+..
T Consensus 42 ~~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 42 EEKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp TCCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 556789999999999999999999988754
No 120
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.66 E-value=0.096 Score=45.36 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=23.5
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
.+.-.|+++|.+|||||+.++.+.+.+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 355679999999999999999998876
No 121
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.64 E-value=0.061 Score=53.07 Aligned_cols=48 Identities=13% Similarity=0.201 Sum_probs=33.3
Q ss_pred CCCCchhH---HHHHHHHHhH--hcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 34 SQEPHVFA---LAEAAYSSLQ--NLDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 34 ~~pPHifa---vA~~Ay~~m~--~~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
..+||-+. |+. ..+... ...+...|+++|-||||||+.++.+-+.|..
T Consensus 370 ~~~p~w~~~~eVsr-~lRe~~~~~gq~~~~I~l~GlsGSGKSTiA~~La~~L~~ 422 (573)
T 1m8p_A 370 AHIPEWFSYPEVVK-ILRESNPPRATQGFTIFLTGYMNSGKDAIARALQVTLNQ 422 (573)
T ss_dssp CCCCTTTSCHHHHH-HHHTTSCCTTTCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCcccccccccH-HHHHhcccccccceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence 34555444 543 333322 3445578999999999999999999998774
No 122
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.63 E-value=0.059 Score=49.44 Aligned_cols=32 Identities=22% Similarity=0.233 Sum_probs=27.4
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHHhhcc
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLCSVTS 85 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~~~~ 85 (276)
.+...|.+.|++|||||++++.+..++...++
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g 158 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGF 158 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 45789999999999999999999998875443
No 123
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.63 E-value=0.043 Score=45.34 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.9
Q ss_pred eEEEeCCCCCChhHHHHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL 80 (276)
.|.|+|.+|||||+.++.+-+.|
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 68999999999999999988765
No 124
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.62 E-value=0.037 Score=46.81 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=22.9
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
...|++.|.+|||||+.++.+.+.|-
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34699999999999999999988874
No 125
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.57 E-value=0.051 Score=49.52 Aligned_cols=35 Identities=14% Similarity=0.261 Sum_probs=28.6
Q ss_pred HHHHhH-hcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 46 AYSSLQ-NLDVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 46 Ay~~m~-~~~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
+++.+. .-...+.+.|.|+||||||+.++.++.++
T Consensus 115 vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 115 ALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 444443 33567899999999999999999999998
No 126
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.56 E-value=0.054 Score=46.78 Aligned_cols=28 Identities=21% Similarity=0.220 Sum_probs=23.9
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.+...|-|.|.+|||||+.++.+...+-
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3557789999999999999999988763
No 127
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.56 E-value=0.043 Score=46.55 Aligned_cols=27 Identities=19% Similarity=0.302 Sum_probs=23.5
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
+.+.+.+.|++|||||+.++.++....
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~ 55 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGA 55 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 568899999999999999999886544
No 128
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.52 E-value=0.029 Score=46.90 Aligned_cols=26 Identities=31% Similarity=0.258 Sum_probs=22.4
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
....|.|+|.||||||+.++.+.+.+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45678999999999999999887764
No 129
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.51 E-value=0.085 Score=50.02 Aligned_cols=41 Identities=24% Similarity=0.173 Sum_probs=31.1
Q ss_pred HHHHHHHhHhcCC-CceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 43 AEAAYSSLQNLDV-NQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 43 A~~Ay~~m~~~~~-~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
|..+.+.+..... ...++|.|++|+|||+.++.+.+.+...
T Consensus 116 a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~ 157 (440)
T 2z4s_A 116 AYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQN 157 (440)
T ss_dssp HHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 3444445544433 6789999999999999999999988654
No 130
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.51 E-value=0.057 Score=44.46 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=22.1
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~y 79 (276)
+...|+++|.+|||||+.++.+-+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999998887
No 131
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=93.50 E-value=0.069 Score=46.32 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=23.4
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.+..|+|.|++|+|||..++.+-+.+.
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 457899999999999999999887754
No 132
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.49 E-value=0.05 Score=45.10 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=22.5
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
+...|+++|.+|||||+.++.+.+.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34579999999999999999998775
No 133
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.48 E-value=0.041 Score=46.09 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=23.4
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
..+.+.|.|+||||||+.++.+.-.+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 568999999999999999998877543
No 134
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=93.45 E-value=0.064 Score=47.11 Aligned_cols=36 Identities=22% Similarity=0.223 Sum_probs=27.8
Q ss_pred HHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 46 AYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 46 Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
..+.+...++...++++|++|+|||+.++.+.+.+.
T Consensus 28 ~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 28 RLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp HHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhc
Confidence 344444455555699999999999999999998873
No 135
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.44 E-value=0.046 Score=47.52 Aligned_cols=27 Identities=26% Similarity=0.246 Sum_probs=22.3
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|+||||||+..|.+.-.+
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 356889999999999999888776554
No 136
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.43 E-value=0.066 Score=48.54 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=25.6
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
+.+.|.+.|.||||||+.++.+..++...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46789999999999999999999888754
No 137
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.41 E-value=0.025 Score=52.36 Aligned_cols=27 Identities=33% Similarity=0.564 Sum_probs=23.7
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
..+.|+++|+||||||+..+.++.++-
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 457899999999999999999988754
No 138
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.40 E-value=0.062 Score=44.81 Aligned_cols=29 Identities=21% Similarity=0.161 Sum_probs=25.0
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
+.+.+++.|++|||||+.++.+...++..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~ 50 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRD 50 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHC
Confidence 56789999999999999999999777643
No 139
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.35 E-value=0.032 Score=47.82 Aligned_cols=26 Identities=27% Similarity=0.426 Sum_probs=22.1
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~y 79 (276)
.+...|.|.|.+|||||+.++.+..+
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34678999999999999998887665
No 140
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.34 E-value=0.052 Score=47.88 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=22.5
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...|+|.|.+|||||+.++.+.+.|
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999998854
No 141
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.33 E-value=0.22 Score=45.60 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=23.9
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
.....|++.|++|+|||..++.+.+.+
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 457899999999999999999988765
No 142
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.31 E-value=0.088 Score=47.59 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=23.9
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
...++++|++|+|||..++.+.+.+.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 37999999999999999999999875
No 143
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=93.29 E-value=0.062 Score=47.38 Aligned_cols=26 Identities=35% Similarity=0.405 Sum_probs=23.4
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
...+++.|++|+|||+.++.+.+.+.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHc
Confidence 36899999999999999999999874
No 144
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.28 E-value=0.051 Score=45.75 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=22.5
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
+.|.+.|.+|||||+..+.+...+.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 4688999999999999999998876
No 145
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=93.27 E-value=0.058 Score=47.45 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=23.9
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.+..|++.|++|+|||..++.+.+.+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 468999999999999999999888753
No 146
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.26 E-value=0.04 Score=53.77 Aligned_cols=46 Identities=11% Similarity=0.110 Sum_probs=34.9
Q ss_pred CCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 35 QEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 35 ~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.+|+|..+..++|... .++...|+++|-||||||+.++.+-+-|-.
T Consensus 376 ~rpeV~~vLr~~~~~~--~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 376 SYPEVVKILRESNPPR--PKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp SCHHHHHHHHHHSCCG--GGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cChhhHHHHHHhcccc--cccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 4567766666665322 234468999999999999999999999875
No 147
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=93.26 E-value=0.023 Score=45.11 Aligned_cols=26 Identities=12% Similarity=0.328 Sum_probs=21.4
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~y 79 (276)
..+..|++.|++|+|||..++.+-+.
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHh
Confidence 44567999999999999988876554
No 148
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.25 E-value=0.073 Score=48.15 Aligned_cols=47 Identities=15% Similarity=0.114 Sum_probs=33.8
Q ss_pred chhHHHHHHHHHhHhc-----------CCCceEEEeCCCCCChhHHHHHHHHHHHhhc
Q psy17386 38 HVFALAEAAYSSLQNL-----------DVNQSCVISGESGAGKTETTKFILQYLCSVT 84 (276)
Q Consensus 38 HifavA~~Ay~~m~~~-----------~~~QsIiisGeSGsGKTe~~k~il~yL~~~~ 84 (276)
.+..+..+....++.. .+.+.|.+.|.+|||||++++.+..++...+
T Consensus 71 ~~~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~ 128 (302)
T 3b9q_A 71 EIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEG 128 (302)
T ss_dssp HHHHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 4555555555555422 2457899999999999999999998876533
No 149
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.25 E-value=0.057 Score=47.23 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=23.2
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 57 QSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
..|++.|-+|||||+.++.+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~ 30 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSK 30 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999998653
No 150
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.22 E-value=0.052 Score=47.50 Aligned_cols=24 Identities=29% Similarity=0.238 Sum_probs=21.2
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL~ 81 (276)
-|+|+|.+|||||+.++.+.+.+-
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 489999999999999999987753
No 151
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.20 E-value=0.093 Score=45.76 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=23.8
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
.....|++.|++|+|||..++.+.+.+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 467789999999999999999987765
No 152
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.17 E-value=0.049 Score=44.91 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=22.7
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
..-|++.|-+|||||+.++.+.+.|
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999999887
No 153
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.09 E-value=0.051 Score=45.75 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=21.0
Q ss_pred eEEEeCCCCCChhHHHHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL 80 (276)
.|+++|.+|||||+.++.+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999998876
No 154
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.09 E-value=0.069 Score=45.05 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.8
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.--|++.|.+|||||+.++.+.+.|-
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35699999999999999999988763
No 155
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.08 E-value=0.057 Score=46.52 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=22.1
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
+..+++.|++|+|||+.++.+...+
T Consensus 49 ~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4569999999999999999988775
No 156
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.83 E-value=0.049 Score=45.20 Aligned_cols=21 Identities=19% Similarity=0.444 Sum_probs=19.5
Q ss_pred eEEEeCCCCCChhHHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFILQ 78 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~ 78 (276)
.|.|+|.+|||||+.++.+.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999887
No 157
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.81 E-value=0.065 Score=45.63 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=21.4
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL~ 81 (276)
-|++.|.+|||||+.++.+.+.|-
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999988763
No 158
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.66 E-value=0.054 Score=49.04 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=21.2
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL 80 (276)
..++|+|.+|||||+..+.++...
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 578999999999999999988763
No 159
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=92.57 E-value=0.08 Score=47.26 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=23.7
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
..+..|++.|++|+|||..++.+...+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 456789999999999999999888765
No 160
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.55 E-value=0.14 Score=44.91 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=26.9
Q ss_pred HHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 47 YSSLQNLDVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 47 y~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.+.+...++...+++.|++|+|||+.++.+.+.+.
T Consensus 33 l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 33 LQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp HHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 44444444434499999999999999999998874
No 161
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=92.55 E-value=0.13 Score=45.93 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=23.3
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
.....|++.|++|+|||..++.+.+.+
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 455789999999999999999987764
No 162
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.53 E-value=0.06 Score=44.76 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=18.9
Q ss_pred eEEEeCCCCCChhHHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFILQ 78 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~ 78 (276)
.|.+.|.+|||||+.++.+..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999988866
No 163
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.53 E-value=0.067 Score=44.96 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=19.7
Q ss_pred ceEEEeCCCCCChhHHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFILQ 78 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~ 78 (276)
-.|+|+|.+|||||+.++.+-+
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998866
No 164
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=92.51 E-value=0.12 Score=45.68 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=24.1
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
..+..++++|++|+|||..++.+.+.+.
T Consensus 36 ~~~~~vll~G~~GtGKT~la~~i~~~~~ 63 (324)
T 1hqc_A 36 EPLEHLLLFGPPGLGKTTLAHVIAHELG 63 (324)
T ss_dssp SCCCCCEEECCTTCCCHHHHHHHHHHHT
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567899999999999999999987653
No 165
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.49 E-value=0.074 Score=45.43 Aligned_cols=40 Identities=20% Similarity=0.208 Sum_probs=28.7
Q ss_pred CCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386 36 EPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 36 pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~y 79 (276)
.|.-|.- ..+++.+ ...+.+.+.|++|||||+..|.+.-.
T Consensus 6 ~pk~~g~-~~~l~~i---~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 6 RPKTLGQ-KHYVDAI---DTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CCCSHHH-HHHHHHH---HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred ccCCHhH-HHHHHhc---cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3454532 2455555 34578999999999999999988766
No 166
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.47 E-value=0.076 Score=46.14 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=22.9
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|+||||||+..|.+...+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456889999999999999988876654
No 167
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.46 E-value=0.078 Score=46.32 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=21.8
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
.+ +.+.+.|+||||||+..|.+.-.+
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 45 788999999999999988876654
No 168
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.42 E-value=0.11 Score=48.35 Aligned_cols=46 Identities=15% Similarity=0.125 Sum_probs=33.6
Q ss_pred chhHHHHHHHHHhHhc-----------CCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 38 HVFALAEAAYSSLQNL-----------DVNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 38 HifavA~~Ay~~m~~~-----------~~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
.+..+..+....++.. ...+.|.+.|.+|||||++++.+..++...
T Consensus 128 ~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~ 184 (359)
T 2og2_A 128 EIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE 184 (359)
T ss_dssp HHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc
Confidence 3555555555555432 245789999999999999999999988653
No 169
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.39 E-value=0.075 Score=46.54 Aligned_cols=27 Identities=33% Similarity=0.502 Sum_probs=22.8
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
..+.+.|.|+||||||+..|.+.-.+.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 567899999999999999888776643
No 170
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.37 E-value=0.11 Score=47.65 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=22.4
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 58 SCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.|-|.|.||||||+.++.+...+..
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 7889999999999999999888753
No 171
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.36 E-value=0.08 Score=46.33 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.0
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~y 79 (276)
..+.+.|.|+||||||+..|.+.-.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999988775
No 172
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=92.33 E-value=0.17 Score=45.80 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=24.0
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
.....+++.|++|+|||+.++.+...+
T Consensus 49 ~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 49 EVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 344789999999999999999999887
No 173
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.30 E-value=0.081 Score=46.05 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=23.2
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
...+.+.|.|+||||||+..|.+.-.+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4568899999999999999888766543
No 174
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.28 E-value=0.053 Score=48.66 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=19.8
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.-.|.|+|.||||||+.++.+.+.|-
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34689999999999999999988765
No 175
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=92.27 E-value=0.079 Score=47.41 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=23.2
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
....|++.|++|+|||..++.+.+.+.
T Consensus 44 ~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCceEEEECCCCccHHHHHHHHHHhCc
Confidence 345699999999999999999888764
No 176
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.26 E-value=0.083 Score=46.60 Aligned_cols=28 Identities=21% Similarity=0.624 Sum_probs=24.1
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
...+.+.|.|+||||||+..|.+...+.
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 4668999999999999999999887653
No 177
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=92.24 E-value=0.055 Score=46.85 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=23.2
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.+..|++.|++|+|||..++.+.+.+.
T Consensus 43 ~~~~vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 43 IPKGVLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CCSCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 456799999999999999999888753
No 178
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.21 E-value=0.11 Score=44.84 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=24.9
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
+..-|++.|.+|||||+.++.+.+.|..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4568999999999999999999999864
No 179
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.20 E-value=0.084 Score=46.61 Aligned_cols=27 Identities=26% Similarity=0.275 Sum_probs=22.2
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|+||||||+..|.+.-.+
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456789999999999999988776543
No 180
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.19 E-value=0.087 Score=46.19 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=21.9
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
+..|++.|++|+|||+.++.+...+
T Consensus 73 ~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 73 PKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCcChHHHHHHHHHHHc
Confidence 4559999999999999999988775
No 181
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.19 E-value=0.09 Score=46.56 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=22.7
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~y 79 (276)
.+.+.+.|.|+||||||+..|.+.-.
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45688999999999999999988775
No 182
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=92.15 E-value=0.13 Score=46.74 Aligned_cols=46 Identities=13% Similarity=0.195 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHhHhc--------CCCceEEEeCCCCCChhHHHHHHHHHHHhhc
Q psy17386 39 VFALAEAAYSSLQNL--------DVNQSCVISGESGAGKTETTKFILQYLCSVT 84 (276)
Q Consensus 39 ifavA~~Ay~~m~~~--------~~~QsIiisGeSGsGKTe~~k~il~yL~~~~ 84 (276)
+..+..+....++.. .....|.+.|.+|+|||++++.+..++...+
T Consensus 79 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g 132 (306)
T 1vma_A 79 ALESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEG 132 (306)
T ss_dssp HHHHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcC
Confidence 666666666665532 2457899999999999999999999987543
No 183
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=92.12 E-value=0.21 Score=45.21 Aligned_cols=31 Identities=16% Similarity=0.186 Sum_probs=27.0
Q ss_pred hcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 52 NLDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 52 ~~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.++-..+++++|+.|.|||+.++.+.+.|..
T Consensus 20 ~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 20 AGRGHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp TTCCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred cCCcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 4456789999999999999999999998864
No 184
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.11 E-value=0.074 Score=45.78 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=20.7
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~y 79 (276)
..+.+.+.|+||||||+..|.+.-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4578899999999999988876544
No 185
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=92.09 E-value=0.15 Score=43.57 Aligned_cols=36 Identities=22% Similarity=0.409 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHH
Q psy17386 39 VFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 39 ifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il 77 (276)
++.+-+++...+.. .+.+++.|++|||||+....++
T Consensus 62 ~~~~q~~~i~~i~~---g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 62 VKKFESEILEAISQ---NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp GGGGHHHHHHHHHH---CSEEEEECCTTSSHHHHHHHHH
T ss_pred hHHHHHHHHHHHhc---CCEEEEEeCCCCCcHHhHHHHH
Confidence 34445555555543 3689999999999998766543
No 186
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.06 E-value=0.092 Score=45.91 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=22.8
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.-.|.|.|.||||||+.++.+.+.|-
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999988763
No 187
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=92.05 E-value=0.13 Score=46.26 Aligned_cols=27 Identities=22% Similarity=0.398 Sum_probs=23.5
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
..+..|+|.||+|+|||..++.+-+..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 457789999999999999999887764
No 188
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.03 E-value=0.085 Score=46.78 Aligned_cols=28 Identities=29% Similarity=0.517 Sum_probs=23.1
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
...+.+.+.|+||||||+..|.+.-.+.
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3567899999999999999888776653
No 189
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.02 E-value=0.081 Score=47.01 Aligned_cols=28 Identities=14% Similarity=0.303 Sum_probs=23.6
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
...+.+.|.|+||||||+..|.|.-.+.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4668899999999999999888876653
No 190
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.01 E-value=0.046 Score=53.18 Aligned_cols=26 Identities=31% Similarity=0.552 Sum_probs=22.4
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
..+.|+++|.+|||||+..+.++.++
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34569999999999999999888776
No 191
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.01 E-value=0.13 Score=50.14 Aligned_cols=47 Identities=15% Similarity=0.201 Sum_probs=35.7
Q ss_pred chhHHHHHHHHHhHhc---------CCCceEEEeCCCCCChhHHHHHHHHHHHhhc
Q psy17386 38 HVFALAEAAYSSLQNL---------DVNQSCVISGESGAGKTETTKFILQYLCSVT 84 (276)
Q Consensus 38 HifavA~~Ay~~m~~~---------~~~QsIiisGeSGsGKTe~~k~il~yL~~~~ 84 (276)
.+..+.......++.. ...+.|.|.|.+|||||+.++.|..++...+
T Consensus 266 ~~~~~l~~~l~~~l~~~~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~ 321 (503)
T 2yhs_A 266 ALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQG 321 (503)
T ss_dssp GHHHHHHHHHHHHHHTTBCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCCCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcC
Confidence 4666666666665542 3467899999999999999999998886543
No 192
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.98 E-value=0.087 Score=47.07 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=22.5
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
.+.+.+.|.|+||||||+..|.+.-.+
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 356789999999999999988876654
No 193
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.96 E-value=0.09 Score=46.21 Aligned_cols=26 Identities=27% Similarity=0.486 Sum_probs=22.0
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
..+.+.+.|+||||||+..|.+.-.+
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56789999999999999988876554
No 194
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.96 E-value=0.093 Score=46.51 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=22.3
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
.+.+.+.|.|+||||||+..|.+.-.+
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 456889999999999999988776543
No 195
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=91.96 E-value=0.13 Score=46.87 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=23.3
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
.+..|++.|++|+|||+.++.+-+.+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998876
No 196
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=91.93 E-value=0.21 Score=45.03 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=24.4
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.+.+++.|++|+|||..++.+.+.+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999999887
No 197
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.93 E-value=0.1 Score=45.16 Aligned_cols=27 Identities=26% Similarity=0.250 Sum_probs=23.0
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
+.-.|.|+|.+|||||+.++.+-+.|-
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 345699999999999999999988764
No 198
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=91.92 E-value=0.28 Score=49.26 Aligned_cols=65 Identities=14% Similarity=0.047 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 16 LDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 16 l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
+.-|+.+..++++.....++.-.= ... +....++..+....+++.|++|+|||..++.+.+.+..
T Consensus 169 l~~~~~~l~~~~~~~~~d~~iGr~-~~i-~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 169 LENFTTNLNQLARVGGIDPLIGRE-KEL-ERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp CCSSSCBHHHHHHTTCSCCCCSCH-HHH-HHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHhHhHHHHHhcCCCCCccCCH-HHH-HHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 444555555555544333322111 111 12334445567788999999999999999999988743
No 199
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.89 E-value=0.13 Score=43.98 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=23.5
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
....|++.|-+|||||+.++.+-+.|-
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345799999999999999999988864
No 200
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.87 E-value=0.089 Score=44.43 Aligned_cols=24 Identities=25% Similarity=0.506 Sum_probs=21.9
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL 80 (276)
..|++.|.+|||||+.++.+-+.|
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999998876
No 201
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.86 E-value=0.18 Score=42.09 Aligned_cols=35 Identities=23% Similarity=0.167 Sum_probs=27.5
Q ss_pred HHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 47 YSSLQNLDVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 47 y~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.+.+....+.-.|++.|.+|+|||+.+..++..+.
T Consensus 29 ~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 29 NRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34444555667899999999999999988888753
No 202
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=91.84 E-value=0.11 Score=43.10 Aligned_cols=25 Identities=16% Similarity=0.001 Sum_probs=22.1
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQ 78 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~ 78 (276)
...+.+++.|++|+|||+.++.+..
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999998877
No 203
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.84 E-value=0.084 Score=45.58 Aligned_cols=27 Identities=33% Similarity=0.482 Sum_probs=22.4
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
.+.+.+.|.|++|||||+..|.+.-.+
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999988876654
No 204
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.82 E-value=0.087 Score=45.27 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=21.5
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
..+.+.|.|++|||||+..|.+.-.+
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45788999999999999988776543
No 205
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.79 E-value=0.11 Score=44.62 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=24.0
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
..-|++.|.+|||||+.++.+.++|..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 457999999999999999999998864
No 206
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.75 E-value=0.1 Score=46.11 Aligned_cols=27 Identities=15% Similarity=0.476 Sum_probs=22.3
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.+.|+||||||+..|.+.-.+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 456789999999999999988876554
No 207
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=91.68 E-value=0.16 Score=46.20 Aligned_cols=29 Identities=24% Similarity=0.378 Sum_probs=25.5
Q ss_pred CCCceEEE--eCCCCCChhHHHHHHHHHHHh
Q psy17386 54 DVNQSCVI--SGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 54 ~~~QsIii--sGeSGsGKTe~~k~il~yL~~ 82 (276)
...+.++| +|++|+|||..++.+.+.+..
T Consensus 48 ~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 48 LSDVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp BCCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 46789999 999999999999999988754
No 208
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=91.67 E-value=0.24 Score=46.86 Aligned_cols=29 Identities=38% Similarity=0.584 Sum_probs=25.9
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcc
Q psy17386 57 QSCVISGESGAGKTETTKFILQYLCSVTS 85 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL~~~~~ 85 (276)
..+++.|..|+|||..++.++.+|.....
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 48999999999999999999999987543
No 209
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.66 E-value=0.13 Score=49.60 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=23.4
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
....++++|++|+|||..++.+.+.+
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34799999999999999999998876
No 210
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.66 E-value=0.11 Score=45.88 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=20.8
Q ss_pred ceEEEeCCCCCChhHHHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~y 79 (276)
..|+++|.+|||||+.++.+.+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999998874
No 211
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.63 E-value=0.11 Score=45.89 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=22.0
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
.+.+.+.|.|++|||||+..|.+.-.+
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 456789999999999999888765543
No 212
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=91.58 E-value=0.11 Score=47.65 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=23.4
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
....|++.|++|+|||+.++.+-+.+
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998876
No 213
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.54 E-value=0.11 Score=45.22 Aligned_cols=26 Identities=35% Similarity=0.406 Sum_probs=21.8
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
..+.+.+.|+||||||+..|.+.-.+
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 55788999999999999988876554
No 214
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.49 E-value=0.13 Score=45.38 Aligned_cols=31 Identities=13% Similarity=0.117 Sum_probs=26.7
Q ss_pred cCCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 53 LDVNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 53 ~~~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
-...+.++|.|++|+|||+.++.+.-.++..
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~ 62 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTA 62 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 3467899999999999999999998887754
No 215
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=91.44 E-value=0.12 Score=45.97 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=23.8
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
+.+..|++.|++|+|||..++.+-+.+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998886
No 216
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.39 E-value=0.12 Score=43.98 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=20.9
Q ss_pred EEEeCCCCCChhHHHHHHHHHHH
Q psy17386 59 CVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 59 IiisGeSGsGKTe~~k~il~yL~ 81 (276)
|++.|.+||||++-++.+.+.+-
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 88999999999999999988863
No 217
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.35 E-value=0.11 Score=46.00 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=20.8
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 58 SCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.+.+.|+||||||+..+.+...+..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~ 28 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVS 28 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999998877543
No 218
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.32 E-value=0.18 Score=45.94 Aligned_cols=30 Identities=20% Similarity=0.326 Sum_probs=26.1
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHHhhc
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLCSVT 84 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~~~~ 84 (276)
..+.|.+.|.+|+|||+++..+..+++..+
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g 133 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELG 133 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 356899999999999999999999988643
No 219
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=91.29 E-value=0.27 Score=45.77 Aligned_cols=41 Identities=20% Similarity=0.335 Sum_probs=29.7
Q ss_pred HHHHHHHHHhH---hcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 41 ALAEAAYSSLQ---NLDVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 41 avA~~Ay~~m~---~~~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.+++.+...+. ..++-..|++.|.+|+|||+.++.+.+.|.
T Consensus 6 ~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 6 KLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 34555555543 334445699999999999999998877664
No 220
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=91.29 E-value=0.14 Score=46.06 Aligned_cols=46 Identities=20% Similarity=0.151 Sum_probs=33.6
Q ss_pred CchhHHHHHHHHHhHh-------cCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 37 PHVFALAEAAYSSLQN-------LDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 37 PHifavA~~Ay~~m~~-------~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
..+..+.......++. ..+.+.|++.|.+|+|||++++.+..++..
T Consensus 79 ~~~~~~~~~~l~~~l~~~~~~~~~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 79 ENVVGKLQEILCDMLPSADKWQEPIHSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp TTHHHHHHHHHHTTSCCGGGSCCCCCSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccccccCCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3455555555555431 235678999999999999999999998874
No 221
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.28 E-value=0.13 Score=43.42 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=22.1
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~y 79 (276)
+.+.+++.|++|||||+.++.++..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 5678999999999999999888764
No 222
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.28 E-value=0.05 Score=49.76 Aligned_cols=27 Identities=26% Similarity=0.625 Sum_probs=23.1
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
..+.+.+.|.+|||||+..+.++.++.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 346899999999999999998888754
No 223
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.22 E-value=0.19 Score=41.84 Aligned_cols=32 Identities=19% Similarity=0.142 Sum_probs=25.2
Q ss_pred hHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 50 LQNLDVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 50 m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
+......-.|++.|.+|+|||+.+..++..+.
T Consensus 24 ~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 24 ALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred hhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 33334556899999999999999999888763
No 224
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=91.21 E-value=0.36 Score=45.99 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=27.2
Q ss_pred HhHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 49 SLQNLDVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 49 ~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.++..+....+++.|++|+|||..++.+.+.+.
T Consensus 194 ~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~ 226 (468)
T 3pxg_A 194 EVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQII 226 (468)
T ss_dssp HHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred HHHhccCCCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 334446667899999999999999999998874
No 225
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.17 E-value=0.17 Score=43.23 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=23.0
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
.+...|.|+|.+|||||+.++.+.+.|
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345689999999999999999888755
No 226
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.16 E-value=0.12 Score=45.37 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=21.6
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
..+.+.+.|+||||||+..|.+.-.+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56788999999999999888776554
No 227
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.11 E-value=0.11 Score=45.10 Aligned_cols=29 Identities=24% Similarity=0.286 Sum_probs=22.1
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
+..-|++.|.+|||||+.++.+.++|...
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 45679999999999999999999998643
No 228
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.07 E-value=0.13 Score=48.23 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=22.8
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
...+.+.+.|+||||||+..|.|.-.+.
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 3567899999999999999888766543
No 229
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=91.06 E-value=0.16 Score=45.60 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=22.9
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
....|++.|++|+|||..++.+.+.+
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 35689999999999999999988775
No 230
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.03 E-value=0.051 Score=49.42 Aligned_cols=29 Identities=24% Similarity=0.437 Sum_probs=24.8
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
...+.+.|.|+||||||+..|.++..+.-
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~p 106 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFYDI 106 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSSCC
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCCC
Confidence 45689999999999999999998887643
No 231
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.01 E-value=0.13 Score=45.19 Aligned_cols=27 Identities=19% Similarity=0.231 Sum_probs=22.6
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
..+.+.+.|++|||||+..|.+.-.+.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 557889999999999999888776653
No 232
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.00 E-value=0.14 Score=46.95 Aligned_cols=32 Identities=16% Similarity=0.253 Sum_probs=24.9
Q ss_pred hHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 50 LQNLDVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 50 m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
|.....+..|+|+|.+|||||+.+..+.+.+-
T Consensus 4 ~~~~~~~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 4 ISKASLPKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp ---CCCCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cccCCCCcEEEEECCCccCHHHHHHHHHHhCC
Confidence 33444567899999999999999999988864
No 233
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.95 E-value=0.13 Score=45.96 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=22.4
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
+.+.+.|.|+||||||+..|.+.-.+.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 567899999999999999888766543
No 234
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=90.94 E-value=0.12 Score=47.40 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=21.5
Q ss_pred CceEEEeCCCCCChhHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~y 79 (276)
...++|+|+||+|||+.+..+++.
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc
Confidence 579999999999999998888774
No 235
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=90.86 E-value=0.15 Score=42.89 Aligned_cols=53 Identities=19% Similarity=0.371 Sum_probs=32.2
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHHhhccCCcchHHHHHHH--hHHHHHHhcCC
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILE--ANTILEAFGNA 108 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~~~~~~~~~~~~~~i~~--a~~ILeaFGnA 108 (276)
..-.|.++|-+|||||+.++.+-+.+-..--+ .+.+..++.. ...|.+.||..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~lg~~vid-~D~~~~~~~~~~~~~i~~~fG~~ 65 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKYGAHVVN-VDRIGHEVLEEVKEKLVELFGGS 65 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHCCEEEE-HHHHHHHHHHHTHHHHHHHHCGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCEEEE-CcHHHHHHHHHHHHHHHHHhChh
Confidence 34568899999999999999988874210001 1222222222 23477788754
No 236
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=90.84 E-value=0.14 Score=42.86 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=21.6
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
+..|.++|.+|||||+.++.+-+.|
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3469999999999999999887765
No 237
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.84 E-value=0.14 Score=41.55 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=20.2
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
...+|.|++|||||+..+.|.--|.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 4789999999999998877665543
No 238
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=90.73 E-value=0.15 Score=43.70 Aligned_cols=26 Identities=35% Similarity=0.494 Sum_probs=23.3
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 57 QSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.-|++.|-+|||||+.++.+.++|..
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46999999999999999999998764
No 239
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=90.65 E-value=0.11 Score=47.48 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=20.3
Q ss_pred CCceEEEeCCCCCChhHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQ 78 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~ 78 (276)
....++|+|+||+|||+.+..+++
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 458899999999999998876655
No 240
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.62 E-value=0.14 Score=44.12 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=22.2
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
....|+|+|.||+|||+.+..+.+...
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 457899999999999998877766543
No 241
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=90.61 E-value=0.18 Score=42.53 Aligned_cols=29 Identities=24% Similarity=0.264 Sum_probs=24.1
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
..+.+++.|++|+|||+.+..++..++..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~ 50 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKM 50 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 56789999999999999988877766643
No 242
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.60 E-value=0.12 Score=47.50 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=23.9
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.+.+.|.|+||||||+.++.+...+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 578999999999999999999888653
No 243
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.57 E-value=0.16 Score=44.38 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=24.7
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
+..-|++.|.+|||||+.++.+.++|..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3568999999999999999999998765
No 244
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.51 E-value=0.11 Score=48.78 Aligned_cols=27 Identities=26% Similarity=0.172 Sum_probs=23.3
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
.....|+++|-||||||+.++.+.+.+
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 456789999999999999999987765
No 245
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=90.50 E-value=0.21 Score=43.31 Aligned_cols=30 Identities=23% Similarity=0.364 Sum_probs=25.7
Q ss_pred cCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 53 LDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 53 ~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
..+..-|++.|-+|||||+.++.+.+.|..
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345678999999999999999999998865
No 246
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.45 E-value=0.14 Score=43.79 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=23.1
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
..-|++.|-.|||||+.++.+.++|.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35699999999999999999999873
No 247
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=90.42 E-value=0.18 Score=45.57 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=23.5
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
....|++.|++|+|||..++.+.+.+
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 34789999999999999999999886
No 248
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.42 E-value=0.14 Score=45.31 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=21.7
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
.+.+.+.|+||||||+..|.+.-.+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 6789999999999999988877654
No 249
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.35 E-value=0.15 Score=47.44 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=22.1
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.+.|+||||||+..|.|.-.+
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 355788999999999999988776654
No 250
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=90.30 E-value=0.22 Score=42.90 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=23.5
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.+.--|++.|.+||||++-++.+.+.+-
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3456788899999999999999988863
No 251
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=90.28 E-value=0.23 Score=48.37 Aligned_cols=29 Identities=28% Similarity=0.264 Sum_probs=25.0
Q ss_pred cCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 53 LDVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 53 ~~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
......+++.|++|+|||+.+|.+-..+.
T Consensus 105 ~~~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 105 SLKGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp SCCSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 33567899999999999999999988873
No 252
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=90.17 E-value=0.18 Score=46.85 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=22.3
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.+.|+||||||+..|.|.-.+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 356789999999999999988876554
No 253
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.09 E-value=0.18 Score=47.02 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=22.1
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
.+.+.+.|.|+||||||+..|.+.-.+
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 456788999999999999888776554
No 254
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.05 E-value=0.14 Score=46.01 Aligned_cols=27 Identities=33% Similarity=0.482 Sum_probs=22.3
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.|.|++|||||+..|.+.-.+
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 356789999999999999988876554
No 255
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=90.02 E-value=0.19 Score=46.79 Aligned_cols=27 Identities=22% Similarity=0.226 Sum_probs=22.1
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.+.|+||||||+..|.|.-.+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 356789999999999999988776554
No 256
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=89.98 E-value=0.17 Score=46.88 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=22.5
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
-.|+|+|.||||||+.++.+.+.|-
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999998874
No 257
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=89.96 E-value=0.21 Score=45.83 Aligned_cols=27 Identities=19% Similarity=0.244 Sum_probs=23.4
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
....|++.|++|+|||..++.+.+.+-
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 346799999999999999999988763
No 258
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=89.96 E-value=0.17 Score=44.76 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=21.4
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
+..+++.|.+|+|||+.+|.+...+
T Consensus 44 ~~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 44 PAGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHc
Confidence 3459999999999999999887764
No 259
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=89.94 E-value=0.17 Score=43.55 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=23.7
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
..-|++.|.+|||||+.++.+.++|..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 467999999999999999999888753
No 260
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=89.92 E-value=0.19 Score=46.73 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=21.6
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
..+.+.+.|+||||||+..|.|.-.+
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 55789999999999999988776553
No 261
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=89.87 E-value=0.18 Score=46.46 Aligned_cols=43 Identities=26% Similarity=0.227 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 39 VFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 39 ifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.|.....|...++.-.+.|.+.|.|.+|||||+..+.|...+.
T Consensus 54 ~~~tg~~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 54 PFILGVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp EECCSCHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred ecCCCCEEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3433346788887777899999999999999999999998854
No 262
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.85 E-value=0.22 Score=43.69 Aligned_cols=27 Identities=15% Similarity=0.195 Sum_probs=23.6
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
+.+.++|.|.+|||||+.++.++-.++
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 568899999999999999998887654
No 263
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=89.73 E-value=0.2 Score=46.73 Aligned_cols=27 Identities=33% Similarity=0.391 Sum_probs=22.3
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.+.|+||||||+..|.|.-.+
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 456789999999999999988776554
No 264
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=89.63 E-value=0.28 Score=43.99 Aligned_cols=29 Identities=24% Similarity=0.421 Sum_probs=23.7
Q ss_pred HhHhcCCCceEEEeCCCCCChhHHHHHHH
Q psy17386 49 SLQNLDVNQSCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 49 ~m~~~~~~QsIiisGeSGsGKTe~~k~il 77 (276)
.+...-..+.+.+.|.||+|||+..+.++
T Consensus 158 ~L~~~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 158 ELVDYLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHhhccCcEEEEECCCCCCHHHHHHHHH
Confidence 34444456889999999999999999888
No 265
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=89.51 E-value=0.21 Score=47.48 Aligned_cols=38 Identities=21% Similarity=0.227 Sum_probs=33.0
Q ss_pred HHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 44 EAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 44 ~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
..|...++.-.+.|.+.|.|.||+|||+..+.|..++.
T Consensus 145 ~~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 145 VRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp CHHHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred ceEEeeeEEecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 45788886677889999999999999999999998864
No 266
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=89.51 E-value=0.21 Score=46.62 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=21.4
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
..+.+.+.|+||||||+..|.|.-.+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 45788999999999999888776543
No 267
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=89.47 E-value=0.18 Score=44.67 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=20.7
Q ss_pred CCceEEEeCCCCCChhHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQ 78 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~ 78 (276)
+.--|.|+|.+|||||+.++.+-+
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998875
No 268
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=89.31 E-value=0.34 Score=48.34 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=24.3
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
+...|+++|-+|||||+.++.+-+.|.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 556899999999999999999999884
No 269
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=89.16 E-value=0.26 Score=45.41 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=22.8
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
....|+|.|++|+|||..++.+.+.+
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh
Confidence 45899999999999999999987664
No 270
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=89.11 E-value=0.34 Score=43.36 Aligned_cols=30 Identities=23% Similarity=0.255 Sum_probs=26.0
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHHhhc
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLCSVT 84 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~~~~ 84 (276)
..+.|.+.|.+|+|||+.++.+...++..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~ 126 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKG 126 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 457899999999999999999999887643
No 271
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=89.11 E-value=0.21 Score=46.88 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=24.2
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
...+.+.|.|+||||||+..|.|.-.+.
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 4568899999999999999999887654
No 272
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=89.07 E-value=0.27 Score=45.37 Aligned_cols=28 Identities=32% Similarity=0.369 Sum_probs=24.1
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.+..+++.|.||||||+.++.++..+..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~ 61 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYM 61 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5667889999999999999999877654
No 273
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=88.92 E-value=0.17 Score=46.88 Aligned_cols=27 Identities=33% Similarity=0.460 Sum_probs=22.1
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.+.|+||||||+..|.|.-.+
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 355789999999999999988776553
No 274
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=88.89 E-value=0.55 Score=44.59 Aligned_cols=46 Identities=20% Similarity=0.104 Sum_probs=41.5
Q ss_pred CchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 37 PHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 37 PHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
|.+....-+|..-+..-.+-|.+.|.|.||+|||+.++.|.+++..
T Consensus 155 ~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 155 GSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp CCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred CCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhh
Confidence 4577888899999999999999999999999999999999998764
No 275
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=88.82 E-value=0.57 Score=44.60 Aligned_cols=29 Identities=21% Similarity=0.228 Sum_probs=25.8
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhc
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLCSVT 84 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~~~~ 84 (276)
...|++.|.+|+|||+++..+..+|...+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G 125 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRG 125 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 57899999999999999999999987643
No 276
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=88.74 E-value=0.29 Score=47.49 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=24.1
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
....|++.|-+|||||+.++.+.++|-
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999999884
No 277
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=88.61 E-value=0.41 Score=42.22 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=21.8
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL 80 (276)
+.++|+|+.|.|||..++.+.+.+
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CeEEEECCCcCCHHHHHHHHHHHc
Confidence 799999999999999999988763
No 278
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=88.61 E-value=0.43 Score=43.59 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=30.7
Q ss_pred HHHHHHhH-hcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 44 EAAYSSLQ-NLDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 44 ~~Ay~~m~-~~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
..+.+.+. ...+...+.+.|.+|||||+..+.++..+..
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 44555553 3457789999999999999999999988754
No 279
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=88.59 E-value=0.24 Score=42.87 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=27.4
Q ss_pred HHHHHhHhcC-CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 45 AAYSSLQNLD-VNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 45 ~Ay~~m~~~~-~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
.+++.+...- +.-+|++.|..|+|||..+..+.+++
T Consensus 46 ~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 46 GALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 4455555542 23479999999999999999988886
No 280
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=88.58 E-value=0.63 Score=47.35 Aligned_cols=59 Identities=25% Similarity=0.338 Sum_probs=35.2
Q ss_pred ecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHH
Q psy17386 10 VNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFI 76 (276)
Q Consensus 10 vNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~i 76 (276)
++||..++ +++...+...... .+|-.+. +.+....+.. ++.+++.|++|||||+....+
T Consensus 71 ~~~f~~~~-l~~~~~~~l~~r~--~lP~~~q---~~~i~~~l~~--~~~vii~gpTGSGKTtllp~l 129 (773)
T 2xau_A 71 INPFTGRE-FTPKYVDILKIRR--ELPVHAQ---RDEFLKLYQN--NQIMVFVGETGSGKTTQIPQF 129 (773)
T ss_dssp BCTTTCSB-CCHHHHHHHHHHT--TSGGGGG---HHHHHHHHHH--CSEEEEECCTTSSHHHHHHHH
T ss_pred CCCccccC-CCHHHHHHHHHhh--cCChHHH---HHHHHHHHhC--CCeEEEECCCCCCHHHHHHHH
Confidence 56776665 3454444443222 4554443 2333344443 467999999999999965555
No 281
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.57 E-value=0.27 Score=40.35 Aligned_cols=21 Identities=29% Similarity=0.484 Sum_probs=17.5
Q ss_pred eEEEeCCCCCChhHHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFILQ 78 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~ 78 (276)
.|++.|.+|+|||+..+.++.
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~ 27 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTR 27 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 478999999999998776654
No 282
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=88.54 E-value=0.23 Score=45.58 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=22.4
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
..|+|+|.+|||||+.++.+.+.+-
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999988863
No 283
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.40 E-value=0.21 Score=45.90 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=22.2
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
-.|+|+|.||||||..++.+.+.+-
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCc
Confidence 4689999999999999999988764
No 284
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=88.23 E-value=0.58 Score=44.73 Aligned_cols=29 Identities=24% Similarity=0.332 Sum_probs=25.9
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
.+..|++.|.+|+|||+++..+..+|...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 36789999999999999999999998864
No 285
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=88.20 E-value=0.23 Score=47.58 Aligned_cols=32 Identities=25% Similarity=0.306 Sum_probs=26.9
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHHhhcc
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLCSVTS 85 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~~~~ 85 (276)
...+.+.|.|.+|||||+.+|.+..++.-.++
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G 167 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYALKFNA 167 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTTHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcccccCC
Confidence 46788999999999999999999998764433
No 286
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=88.18 E-value=0.53 Score=41.51 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=22.1
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL 80 (276)
+.++|+|+.|.|||..++.+.+.+
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHhc
Confidence 699999999999999999988875
No 287
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=88.04 E-value=0.26 Score=40.36 Aligned_cols=21 Identities=29% Similarity=0.484 Sum_probs=17.6
Q ss_pred eEEEeCCCCCChhHHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFILQ 78 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~ 78 (276)
.|++.|.+|+|||+..+.+..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~ 51 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTR 51 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 578999999999998776543
No 288
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=88.03 E-value=0.29 Score=42.00 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.8
Q ss_pred eEEEeCCCCCChhHHHHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL 80 (276)
-|+++|.+||||++.++.+.+.+
T Consensus 13 II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 13 VLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHHc
Confidence 68899999999999999998855
No 289
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=87.92 E-value=0.35 Score=46.02 Aligned_cols=28 Identities=29% Similarity=0.364 Sum_probs=24.2
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.....|++.|-+|||||+.++.+.++|.
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3456899999999999999999998875
No 290
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=87.87 E-value=0.51 Score=47.51 Aligned_cols=32 Identities=25% Similarity=0.337 Sum_probs=26.8
Q ss_pred hHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 50 LQNLDVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 50 m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
++..+....+++.|++|+|||..++.+.+.+.
T Consensus 195 ~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~ 226 (758)
T 3pxi_A 195 VLSRRTKNNPVLIGEPGVGKTAIAEGLAQQII 226 (758)
T ss_dssp HHHCSSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred HHhCCCCCCeEEECCCCCCHHHHHHHHHHHHh
Confidence 34446667899999999999999999998874
No 291
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=87.80 E-value=0.17 Score=46.81 Aligned_cols=27 Identities=33% Similarity=0.352 Sum_probs=22.0
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.+.|+||||||+..|.|.-.+
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 356789999999999999988776553
No 292
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=87.79 E-value=0.67 Score=43.82 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=23.5
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
...|++.|++|+|||..++.+-+.+-
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 46899999999999999999998874
No 293
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=87.76 E-value=0.33 Score=37.77 Aligned_cols=20 Identities=20% Similarity=0.328 Sum_probs=17.1
Q ss_pred eEEEeCCCCCChhHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il 77 (276)
.|++.|.+|+|||+..+.++
T Consensus 7 ~i~v~G~~~~GKssl~~~l~ 26 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYC 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 58999999999999877655
No 294
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=87.70 E-value=0.28 Score=41.39 Aligned_cols=25 Identities=20% Similarity=0.127 Sum_probs=22.1
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
-.|.|+|++|||||+.++.+-+.|-
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999888764
No 295
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=87.69 E-value=0.24 Score=48.50 Aligned_cols=29 Identities=17% Similarity=0.416 Sum_probs=25.0
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
...+.+.+.|+||||||+..|.+...+.-
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p 395 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFYDV 395 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 45688999999999999999999887643
No 296
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=87.63 E-value=0.33 Score=46.81 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=23.3
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
..+..|+|.|++|+|||..++.+-+.+
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 567789999999999999999886654
No 297
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=87.58 E-value=0.24 Score=48.70 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=23.3
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.+.+++.|++|+|||+.++.+...+.
T Consensus 60 g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 60 KRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 36899999999999999999998764
No 298
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=87.53 E-value=0.29 Score=46.35 Aligned_cols=24 Identities=29% Similarity=0.446 Sum_probs=21.8
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.|+|+|.||||||+.++.+.+.+-
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHT
T ss_pred EEEEECcchhhHHHHHHHHHHHCC
Confidence 589999999999999999988874
No 299
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=87.06 E-value=0.39 Score=37.19 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=16.8
Q ss_pred eEEEeCCCCCChhHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il 77 (276)
.|++.|.+|+|||.....++
T Consensus 3 ki~v~G~~~~GKSsli~~l~ 22 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLL 22 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48999999999999766655
No 300
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=87.05 E-value=0.43 Score=46.14 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=22.8
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 57 QSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
+.+.|.|+||||||+..+.+.-.+..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p 55 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIP 55 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCC
Confidence 78999999999999999988877643
No 301
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=86.83 E-value=0.55 Score=42.19 Aligned_cols=29 Identities=21% Similarity=0.245 Sum_probs=25.3
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhc
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLCSVT 84 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~~~~ 84 (276)
...|+++|.+|+|||+.+..+..+++..+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g 126 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKG 126 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 56899999999999999999999987643
No 302
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=86.80 E-value=0.47 Score=45.04 Aligned_cols=30 Identities=23% Similarity=0.255 Sum_probs=26.1
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHHhhc
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLCSVT 84 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~~~~ 84 (276)
..+.|.+.|.+|+|||+++..+..++...+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g 126 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKG 126 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 357899999999999999999999988643
No 303
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=86.72 E-value=0.34 Score=46.80 Aligned_cols=36 Identities=25% Similarity=0.439 Sum_probs=26.6
Q ss_pred HHHHhHh--cCCCceEEEeCCCCCChhHHHHHH-HHHHH
Q psy17386 46 AYSSLQN--LDVNQSCVISGESGAGKTETTKFI-LQYLC 81 (276)
Q Consensus 46 Ay~~m~~--~~~~QsIiisGeSGsGKTe~~k~i-l~yL~ 81 (276)
++..+.. -.+.+.+.+.|++|||||+.++.+ +.-+.
T Consensus 27 ~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 27 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4555544 246789999999999999999986 34443
No 304
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=86.71 E-value=0.31 Score=39.40 Aligned_cols=20 Identities=30% Similarity=0.567 Sum_probs=16.9
Q ss_pred eEEEeCCCCCChhHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il 77 (276)
.|++.|.+|+|||+..+.++
T Consensus 4 kv~ivG~~gvGKStLl~~l~ 23 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLM 23 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48999999999999876654
No 305
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=86.70 E-value=0.22 Score=48.73 Aligned_cols=28 Identities=21% Similarity=0.489 Sum_probs=24.2
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
...+.+.+.|+||||||+..|.+...+.
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhccC
Confidence 4568899999999999999999888754
No 306
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=86.66 E-value=0.37 Score=37.17 Aligned_cols=20 Identities=30% Similarity=0.521 Sum_probs=16.7
Q ss_pred eEEEeCCCCCChhHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il 77 (276)
.|++.|.+|+|||+....++
T Consensus 5 ~i~v~G~~~~GKssl~~~l~ 24 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLI 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999765554
No 307
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=86.65 E-value=0.4 Score=46.73 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=22.8
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.+.|++|||||+..|.+.-.+
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999999998887654
No 308
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=86.65 E-value=0.41 Score=45.28 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=23.5
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
....|++.|++|+|||..++.+.+.+
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998876
No 309
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=86.60 E-value=0.43 Score=36.95 Aligned_cols=20 Identities=25% Similarity=0.504 Sum_probs=16.7
Q ss_pred eEEEeCCCCCChhHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il 77 (276)
.|++.|.+|+|||.....++
T Consensus 6 ~i~v~G~~~~GKssl~~~l~ 25 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFM 25 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999765544
No 310
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=86.54 E-value=0.38 Score=41.47 Aligned_cols=26 Identities=27% Similarity=0.206 Sum_probs=22.6
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.-.|.|+|.+|||||+.++.+-+.|-
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999888764
No 311
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=86.43 E-value=0.38 Score=44.17 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.9
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
..+.+.|.|++|||||+.++.+.-..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 56889999999999999999887764
No 312
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=86.35 E-value=0.45 Score=42.52 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=20.4
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~y 79 (276)
..+.+.+.|+||||||+..+.+...
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTT
T ss_pred cCCeEEEECCCCCcHHHHHHHhccc
Confidence 4578999999999999987766543
No 313
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=86.27 E-value=0.34 Score=47.57 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=23.9
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
...+.+.+.|+||||||+..|.+...+.
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 3568899999999999999999887754
No 314
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=86.27 E-value=0.5 Score=43.92 Aligned_cols=36 Identities=28% Similarity=0.358 Sum_probs=26.1
Q ss_pred chhHH-HHHHHHHhHhcCCCceEEEeCCCCCChhHHH
Q psy17386 38 HVFAL-AEAAYSSLQNLDVNQSCVISGESGAGKTETT 73 (276)
Q Consensus 38 Hifav-A~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~ 73 (276)
.||.- +.......+..+.+-+|+..|.+|||||.++
T Consensus 66 ~Vy~~~~~plv~~~~~~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 66 TVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHH
T ss_pred HHHHHHhhhhhhhhccCCceeEEEeeCCCCCCCCEEE
Confidence 45552 3333445555678889999999999999975
No 315
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=86.21 E-value=0.71 Score=41.55 Aligned_cols=34 Identities=18% Similarity=0.167 Sum_probs=27.6
Q ss_pred HHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386 46 AYSSLQNLDVNQSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 46 Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~y 79 (276)
..+.+...++..++++.|+.|.|||+.++.+.+-
T Consensus 8 ~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 8 TLKRIIEKSEGISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp HHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4455555555789999999999999999998875
No 316
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=86.19 E-value=0.42 Score=37.84 Aligned_cols=20 Identities=15% Similarity=0.285 Sum_probs=17.0
Q ss_pred eEEEeCCCCCChhHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il 77 (276)
.|++.|.+|+|||+..+.+.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999776654
No 317
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=86.17 E-value=0.36 Score=47.53 Aligned_cols=28 Identities=21% Similarity=0.507 Sum_probs=24.3
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
...+.+.+.|+||||||+..|.++..+.
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 4568999999999999999999887764
No 318
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=86.14 E-value=0.56 Score=39.37 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=22.8
Q ss_pred EEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 59 CVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 59 IiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
|+|-|--|||||+-++.+.++|...
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~ 27 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKR 27 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 7899999999999999999998764
No 319
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.14 E-value=0.46 Score=36.90 Aligned_cols=20 Identities=25% Similarity=0.385 Sum_probs=16.5
Q ss_pred eEEEeCCCCCChhHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il 77 (276)
.|++.|.+|+|||.....++
T Consensus 5 ~i~v~G~~~~GKssli~~l~ 24 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFV 24 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48999999999999766553
No 320
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=86.01 E-value=0.44 Score=38.86 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=17.7
Q ss_pred CCCceEEEeCCCCCChhHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il 77 (276)
.+.=.|++.|.+|+|||...+.+.
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~ 44 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLK 44 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 334479999999999999766554
No 321
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=86.00 E-value=0.76 Score=45.32 Aligned_cols=28 Identities=39% Similarity=0.515 Sum_probs=25.3
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
+..++++|..|+|||++...++..|...
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~~~ 191 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALIQM 191 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 5789999999999999999999998864
No 322
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=85.98 E-value=0.48 Score=36.62 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=16.4
Q ss_pred eEEEeCCCCCChhHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il 77 (276)
.|++.|.+|+|||+....++
T Consensus 5 ~i~v~G~~~~GKSsli~~l~ 24 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999755444
No 323
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=85.88 E-value=0.48 Score=37.38 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=17.5
Q ss_pred ceEEEeCCCCCChhHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il 77 (276)
=.|++.|.+|+|||.....++
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~ 29 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYV 29 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999776654
No 324
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=85.84 E-value=0.79 Score=45.01 Aligned_cols=30 Identities=30% Similarity=0.412 Sum_probs=26.1
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHHhhc
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLCSVT 84 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~~~~ 84 (276)
.++.++++|..|+|||+.++.+++.+....
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g 232 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAESLG 232 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 457899999999999999999999887643
No 325
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=85.83 E-value=0.49 Score=36.72 Aligned_cols=20 Identities=30% Similarity=0.466 Sum_probs=16.8
Q ss_pred eEEEeCCCCCChhHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il 77 (276)
.|++.|.+|+|||...+.++
T Consensus 5 ki~v~G~~~~GKssli~~l~ 24 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999766554
No 326
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=85.82 E-value=0.45 Score=38.09 Aligned_cols=21 Identities=14% Similarity=0.245 Sum_probs=17.7
Q ss_pred ceEEEeCCCCCChhHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il 77 (276)
-.|++.|.+|+|||+..+.++
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~ 28 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALT 28 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 358999999999999877664
No 327
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=85.78 E-value=0.56 Score=48.04 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=27.4
Q ss_pred hHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 50 LQNLDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 50 m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.+..+....+++.|++|+|||..++.+.+.+..
T Consensus 185 ~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 185 ILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp HHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 334566678999999999999999999998854
No 328
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=85.69 E-value=1 Score=40.08 Aligned_cols=38 Identities=16% Similarity=0.205 Sum_probs=28.5
Q ss_pred HHHHHHHhHhcC-C-CceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 43 AEAAYSSLQNLD-V-NQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 43 A~~Ay~~m~~~~-~-~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+....+... . .-+|++.|.+|+|||..++.+.+++
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 344455555554 2 3589999999999999999888863
No 329
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=85.65 E-value=0.69 Score=42.84 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=19.9
Q ss_pred hcCCCceEEEeCCCCCChhHHH
Q psy17386 52 NLDVNQSCVISGESGAGKTETT 73 (276)
Q Consensus 52 ~~~~~QsIiisGeSGsGKTe~~ 73 (276)
..+-|-+|+..|.+|||||.++
T Consensus 89 l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 89 FDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HTTCCEEEEEEECTTSSHHHHH
T ss_pred hCCceeEEEeeCCCCCCCceEE
Confidence 4678999999999999999985
No 330
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=85.60 E-value=0.58 Score=41.70 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=21.3
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL 80 (276)
..+++.|++|+|||..++.+-+.+
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 479999999999999999887765
No 331
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=85.56 E-value=0.5 Score=36.86 Aligned_cols=20 Identities=30% Similarity=0.278 Sum_probs=16.7
Q ss_pred eEEEeCCCCCChhHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il 77 (276)
.|++.|.+|+|||.....++
T Consensus 8 ~i~v~G~~~~GKssli~~l~ 27 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 58999999999999765544
No 332
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=85.50 E-value=0.53 Score=43.68 Aligned_cols=26 Identities=23% Similarity=0.440 Sum_probs=21.7
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
..+.+.+.|.||+|||+..+.++-.+
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCCEEEEECCCCccHHHHHHHHhccc
Confidence 56789999999999999888776543
No 333
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=85.48 E-value=0.52 Score=36.71 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=16.7
Q ss_pred eEEEeCCCCCChhHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il 77 (276)
.|++.|.+|+|||...+.++
T Consensus 8 ~i~v~G~~~~GKSsli~~l~ 27 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFV 27 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 48999999999999766653
No 334
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=85.47 E-value=0.71 Score=38.71 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=20.9
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~y 79 (276)
..+.+++.|++|+|||..+..++..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 5688999999999999988766544
No 335
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=85.46 E-value=0.88 Score=45.79 Aligned_cols=24 Identities=29% Similarity=0.510 Sum_probs=22.3
Q ss_pred eEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~yL~ 81 (276)
++++.|++|+|||+.++.+-+.+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~ 546 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIF 546 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 699999999999999999999874
No 336
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=85.45 E-value=0.38 Score=44.46 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=23.6
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
....|+|+|.+|||||..++.+.+.|-
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 445899999999999999999988774
No 337
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=85.35 E-value=0.61 Score=44.91 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=22.7
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
.+..|++.|++|+|||..+|.+...+
T Consensus 48 ~p~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 48 MPKGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp CCSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45779999999999999999887764
No 338
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=85.33 E-value=0.52 Score=37.98 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=17.6
Q ss_pred ceEEEeCCCCCChhHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il 77 (276)
=.|++.|.+|+|||.....++
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~ 69 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLT 69 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 379999999999999766654
No 339
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=85.21 E-value=0.51 Score=46.80 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=23.7
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
...+.+.+.|+||||||+..|.+.-.+.
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 4678999999999999999888876543
No 340
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=85.20 E-value=0.7 Score=42.67 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=19.7
Q ss_pred hcCCCceEEEeCCCCCChhHHH
Q psy17386 52 NLDVNQSCVISGESGAGKTETT 73 (276)
Q Consensus 52 ~~~~~QsIiisGeSGsGKTe~~ 73 (276)
..+-|-+|+..|.+|||||.++
T Consensus 91 l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 91 LEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHTCCEEEEEESSTTSSHHHHH
T ss_pred hCCCceEEEEecCCCCCCCeEE
Confidence 3578999999999999999986
No 341
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=85.19 E-value=0.7 Score=39.42 Aligned_cols=28 Identities=32% Similarity=0.349 Sum_probs=24.8
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.+.-.++++|..|+|||+.+..+..+|+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 4457788999999999999999999887
No 342
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=85.18 E-value=0.49 Score=46.16 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=23.3
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
...+.+.+.|++|||||+..|.+.-.+.
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 4567889999999999999988876543
No 343
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=85.18 E-value=0.54 Score=37.04 Aligned_cols=20 Identities=20% Similarity=0.478 Sum_probs=16.7
Q ss_pred eEEEeCCCCCChhHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il 77 (276)
.|++.|.+|+|||.....++
T Consensus 9 ~i~v~G~~~~GKSsli~~l~ 28 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYV 28 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999766553
No 344
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=85.08 E-value=0.74 Score=42.12 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=19.7
Q ss_pred hcCCCceEEEeCCCCCChhHHH
Q psy17386 52 NLDVNQSCVISGESGAGKTETT 73 (276)
Q Consensus 52 ~~~~~QsIiisGeSGsGKTe~~ 73 (276)
..+-|-+|+..|.+|||||.++
T Consensus 74 l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 74 LEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HTTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCeEEEEEECCCCCCCceEe
Confidence 3678999999999999999985
No 345
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=85.00 E-value=0.59 Score=38.44 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=17.5
Q ss_pred CCCceEEEeCCCCCChhHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il 77 (276)
.+.=.|++.|.+|+|||.....++
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~ 28 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLL 28 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
Confidence 344579999999999999766554
No 346
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=85.00 E-value=0.48 Score=37.30 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=17.7
Q ss_pred ceEEEeCCCCCChhHHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFILQ 78 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~ 78 (276)
=.|++.|.+|+|||.....++.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~ 31 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQ 31 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999997665543
No 347
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=84.99 E-value=0.21 Score=43.39 Aligned_cols=27 Identities=22% Similarity=0.214 Sum_probs=23.6
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
+..-|++.|-.|||||+.++.+.++|.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456799999999999999999888873
No 348
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=84.97 E-value=0.53 Score=36.64 Aligned_cols=20 Identities=20% Similarity=0.361 Sum_probs=16.6
Q ss_pred eEEEeCCCCCChhHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il 77 (276)
.|++.|.+|+|||.....++
T Consensus 5 ~i~v~G~~~~GKssli~~l~ 24 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFV 24 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999766554
No 349
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=84.95 E-value=0.52 Score=44.83 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=21.0
Q ss_pred CCCce--EEEeCCCCCChhHHHHHHHHH
Q psy17386 54 DVNQS--CVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 54 ~~~Qs--IiisGeSGsGKTe~~k~il~y 79 (276)
..... |.|.|+||||||+..+.++..
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 45566 899999999999998887654
No 350
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=84.93 E-value=0.96 Score=46.28 Aligned_cols=25 Identities=36% Similarity=0.458 Sum_probs=23.1
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.+++|.|++|+|||+.++.+-+.+.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999999874
No 351
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=84.89 E-value=0.23 Score=48.83 Aligned_cols=29 Identities=21% Similarity=0.381 Sum_probs=24.7
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
...+.+.+.|+||||||+..+.++..+.-
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~~~ 395 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLIDP 395 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSSCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCccC
Confidence 45689999999999999999988877643
No 352
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=84.76 E-value=0.61 Score=39.47 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=22.4
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.-|+|-|--|||||+-++.+.++|.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3589999999999999999999984
No 353
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=84.68 E-value=0.69 Score=42.97 Aligned_cols=22 Identities=36% Similarity=0.367 Sum_probs=19.5
Q ss_pred hcCCCceEEEeCCCCCChhHHH
Q psy17386 52 NLDVNQSCVISGESGAGKTETT 73 (276)
Q Consensus 52 ~~~~~QsIiisGeSGsGKTe~~ 73 (276)
..+-|-+|+..|.+|||||.++
T Consensus 101 l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 101 LDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HTTCCEEEEEEESTTSSHHHHH
T ss_pred hCCCCEEEEEeCCCCCCccEEe
Confidence 3577999999999999999975
No 354
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=84.67 E-value=0.6 Score=36.23 Aligned_cols=20 Identities=30% Similarity=0.391 Sum_probs=16.6
Q ss_pred eEEEeCCCCCChhHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il 77 (276)
.|++.|.+|+|||.....++
T Consensus 8 ~i~v~G~~~~GKssli~~l~ 27 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999765554
No 355
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=84.62 E-value=0.6 Score=36.67 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=17.0
Q ss_pred eEEEeCCCCCChhHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il 77 (276)
.|++.|.+|+|||...+.++
T Consensus 17 ~i~v~G~~~~GKSsli~~l~ 36 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFT 36 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 59999999999999766654
No 356
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=84.62 E-value=0.77 Score=39.66 Aligned_cols=27 Identities=30% Similarity=0.139 Sum_probs=20.9
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
+..-++++|+.|+|||+.+..++.-+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~ 37 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLE 37 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 457899999999999998765555443
No 357
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=84.58 E-value=0.55 Score=37.65 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=18.1
Q ss_pred CceEEEeCCCCCChhHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il 77 (276)
...|++.|.+|+|||+..+.+.
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~ 25 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALA 25 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4579999999999999766654
No 358
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=84.53 E-value=0.74 Score=43.68 Aligned_cols=46 Identities=15% Similarity=0.210 Sum_probs=34.1
Q ss_pred chhHHHHHHHHHhHhc---------CCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 38 HVFALAEAAYSSLQNL---------DVNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 38 HifavA~~Ay~~m~~~---------~~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
++..+.......++.. .....|++.|.+|+|||+++-.+..+|+..
T Consensus 73 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 73 EFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp TTHHHHHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 4555555555555432 235689999999999999999999999875
No 359
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=84.47 E-value=0.54 Score=36.61 Aligned_cols=20 Identities=25% Similarity=0.395 Sum_probs=16.7
Q ss_pred eEEEeCCCCCChhHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il 77 (276)
.|++.|.+|+|||.....++
T Consensus 5 ~i~v~G~~~~GKssli~~l~ 24 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFV 24 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 48999999999999766654
No 360
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=84.45 E-value=0.57 Score=36.72 Aligned_cols=20 Identities=30% Similarity=0.567 Sum_probs=16.5
Q ss_pred eEEEeCCCCCChhHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il 77 (276)
.|++.|.+|+|||.....++
T Consensus 6 ki~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHh
Confidence 58999999999999765543
No 361
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=84.43 E-value=0.43 Score=42.78 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=19.2
Q ss_pred CceEEEeCCCCCChhHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQ 78 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~ 78 (276)
+=.|++.|++|+|||+..+.+..
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 44679999999999999888654
No 362
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=84.34 E-value=0.63 Score=36.12 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=16.4
Q ss_pred EEEeCCCCCChhHHHHHHH
Q psy17386 59 CVISGESGAGKTETTKFIL 77 (276)
Q Consensus 59 IiisGeSGsGKTe~~k~il 77 (276)
|++.|.+|+|||.....++
T Consensus 3 i~~~G~~~~GKssl~~~l~ 21 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLK 21 (164)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 8899999999999876654
No 363
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=84.33 E-value=0.63 Score=36.32 Aligned_cols=20 Identities=35% Similarity=0.376 Sum_probs=16.8
Q ss_pred ceEEEeCCCCCChhHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFI 76 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~i 76 (276)
=.|++.|.+|+|||.....+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l 27 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRL 27 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 45999999999999976655
No 364
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=84.31 E-value=0.6 Score=46.85 Aligned_cols=24 Identities=38% Similarity=0.511 Sum_probs=22.1
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL 80 (276)
-++++.|++|+|||+.++.+-+.+
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh
Confidence 479999999999999999998887
No 365
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=84.29 E-value=0.63 Score=36.83 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=17.2
Q ss_pred ceEEEeCCCCCChhHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il 77 (276)
=.|++.|.+|+|||.....++
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~ 39 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFM 39 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 359999999999999765554
No 366
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=84.29 E-value=0.84 Score=42.03 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=19.7
Q ss_pred hcCCCceEEEeCCCCCChhHHH
Q psy17386 52 NLDVNQSCVISGESGAGKTETT 73 (276)
Q Consensus 52 ~~~~~QsIiisGeSGsGKTe~~ 73 (276)
..+-|-+|+..|.+|||||.++
T Consensus 80 l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 80 FEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HTTCCEEEEEESSTTSSHHHHH
T ss_pred HhhcCeeEEEecccCCCceEee
Confidence 3578999999999999999986
No 367
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=84.27 E-value=0.95 Score=42.21 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=24.3
Q ss_pred chhHHH-HHHHHHhHhcCCCceEEEeCCCCCChhHHH
Q psy17386 38 HVFALA-EAAYSSLQNLDVNQSCVISGESGAGKTETT 73 (276)
Q Consensus 38 HifavA-~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~ 73 (276)
.||.-. ....... ..+-|-+|+..|.+|||||.++
T Consensus 83 ~Vy~~~~~plv~~~-l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 83 DVYSVVVSPLIEEV-LNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHHHHHHHHH-HHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHHHH-hCCceEEEEeecCCCCCcceec
Confidence 456532 2223333 3578999999999999999974
No 368
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=84.25 E-value=0.72 Score=38.20 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=18.8
Q ss_pred CceEEEeCCCCCChhHHHH-HHHHH
Q psy17386 56 NQSCVISGESGAGKTETTK-FILQY 79 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k-~il~y 79 (276)
.+.++++|..|+|||+.+. .+.++
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999974 44444
No 369
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=84.18 E-value=0.52 Score=48.17 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=23.1
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
.....|++.|++|+|||+.++.+...+
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 456789999999999999999887653
No 370
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=84.17 E-value=0.64 Score=36.98 Aligned_cols=20 Identities=30% Similarity=0.350 Sum_probs=16.6
Q ss_pred eEEEeCCCCCChhHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il 77 (276)
.|++.|.+|+|||.....++
T Consensus 13 ki~v~G~~~~GKSsli~~l~ 32 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYT 32 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999765543
No 371
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=84.15 E-value=0.6 Score=36.78 Aligned_cols=23 Identities=26% Similarity=0.196 Sum_probs=18.4
Q ss_pred CCceEEEeCCCCCChhHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il 77 (276)
+.-.|++.|.+|+|||.....++
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~ 29 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIR 29 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34569999999999999776654
No 372
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=84.14 E-value=0.61 Score=45.14 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=22.0
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
+..|++.|++|+|||..+|.+...+
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4569999999999999999888764
No 373
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=84.12 E-value=0.32 Score=47.62 Aligned_cols=28 Identities=21% Similarity=0.427 Sum_probs=23.9
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
.+.+.+.+.|+||||||+..|.++..+.
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 4568999999999999999988877654
No 374
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=84.12 E-value=0.62 Score=38.43 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=19.3
Q ss_pred CCceEEEeCCCCCChhHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQ 78 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~ 78 (276)
..-.|++.|.+|+|||.....++.
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~ 34 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTT 34 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999998776654
No 375
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=84.09 E-value=0.63 Score=37.13 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=18.1
Q ss_pred ceEEEeCCCCCChhHHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFILQ 78 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~ 78 (276)
=.|++.|.+|+|||.....++.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~ 29 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTK 29 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999998776654
No 376
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=84.08 E-value=0.64 Score=37.30 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=17.5
Q ss_pred ceEEEeCCCCCChhHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il 77 (276)
=.|++.|.+|+|||+....++
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~ 42 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLI 42 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHH
Confidence 369999999999999766654
No 377
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=84.07 E-value=0.72 Score=39.60 Aligned_cols=38 Identities=21% Similarity=0.121 Sum_probs=26.9
Q ss_pred hHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 40 FALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 40 favA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...=..|+..+... ..+++.|++|+|||..+..++..+
T Consensus 95 ~~~Q~~ai~~~~~~---~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 95 RDYQEKALERWLVD---KRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CHHHHHHHHHHTTT---SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhC---CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 33344566665544 238899999999999988777654
No 378
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=83.98 E-value=0.87 Score=42.37 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=19.7
Q ss_pred hcCCCceEEEeCCCCCChhHHH
Q psy17386 52 NLDVNQSCVISGESGAGKTETT 73 (276)
Q Consensus 52 ~~~~~QsIiisGeSGsGKTe~~ 73 (276)
..+-|-+|+..|.+|||||.++
T Consensus 81 l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 81 LAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HTTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCceEEEeecCCCCCCceEE
Confidence 3577999999999999999985
No 379
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=83.96 E-value=0.65 Score=36.88 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=16.8
Q ss_pred eEEEeCCCCCChhHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il 77 (276)
.|++.|.+|+|||.....++
T Consensus 6 ki~v~G~~~~GKSsli~~l~ 25 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLI 25 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999766654
No 380
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=83.90 E-value=0.57 Score=44.06 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=20.1
Q ss_pred CCceEEEeCCCCCChhHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il 77 (276)
..+.+.|.|+||+|||+.++.++
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHH
Confidence 56889999999999999988664
No 381
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=83.88 E-value=0.34 Score=39.71 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=19.7
Q ss_pred cCCCceEEEeCCCCCChhHHHHHHH
Q psy17386 53 LDVNQSCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 53 ~~~~QsIiisGeSGsGKTe~~k~il 77 (276)
-.....|++.|.+|+|||+..+.++
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHh
Confidence 3455679999999999999766543
No 382
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=83.87 E-value=0.49 Score=44.78 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=20.0
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~y 79 (276)
-+=.|++.|+||+|||+..+.++..
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTC
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCC
Confidence 3445799999999999988877654
No 383
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=83.82 E-value=0.65 Score=43.25 Aligned_cols=31 Identities=13% Similarity=0.113 Sum_probs=26.2
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHHhhc
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLCSVT 84 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~~~~ 84 (276)
..++.+++.|.+|||||+..+.++..+...+
T Consensus 51 ~~~~h~~i~G~tGsGKs~~~~~li~~~~~~g 81 (437)
T 1e9r_A 51 AEPRHLLVNGATGTGKSVLLRELAYTGLLRG 81 (437)
T ss_dssp GGGGCEEEEECTTSSHHHHHHHHHHHHHHTT
T ss_pred cCcceEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 3578899999999999999988888876543
No 384
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=83.81 E-value=1.2 Score=36.27 Aligned_cols=55 Identities=20% Similarity=0.208 Sum_probs=32.2
Q ss_pred CHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHH-HHHHHHHH
Q psy17386 20 TQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETT-KFILQYLC 81 (276)
Q Consensus 20 ~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~-k~il~yL~ 81 (276)
++...+......... | +.+=.+|...+... +.+++.+++|+|||.+. ..+++.+.
T Consensus 9 ~~~l~~~l~~~~~~~--~--~~~Q~~~i~~~~~~---~~~li~~~TGsGKT~~~~~~~~~~l~ 64 (207)
T 2gxq_A 9 KPEILEALHGRGLTT--P--TPIQAAALPLALEG---KDLIGQARTGTGKTLAFALPIAERLA 64 (207)
T ss_dssp CHHHHHHHHHTTCCS--C--CHHHHHHHHHHHTT---CCEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHcCCCC--C--CHHHHHHHHHHcCC---CCEEEECCCCChHHHHHHHHHHHHHh
Confidence 355555554433222 2 23334555555543 45999999999999984 44555554
No 385
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=83.76 E-value=0.88 Score=42.15 Aligned_cols=35 Identities=23% Similarity=0.384 Sum_probs=24.7
Q ss_pred chhHH-HHHHHHHhHhcCCCceEEEeCCCCCChhHHH
Q psy17386 38 HVFAL-AEAAYSSLQNLDVNQSCVISGESGAGKTETT 73 (276)
Q Consensus 38 Hifav-A~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~ 73 (276)
.||.- +....... ..+-|-+|+..|.+|||||.++
T Consensus 63 ~Vy~~~~~plv~~~-l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 63 DIFDFSIKPTVDDI-LNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHHHTHHHHHHH-TTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHHHH-hCCCcceEEEECCCCCCcceEe
Confidence 45652 33333333 3578999999999999999975
No 386
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=83.73 E-value=1 Score=42.92 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.9
Q ss_pred hcCCCceEEEeCCCCCChhHHH
Q psy17386 52 NLDVNQSCVISGESGAGKTETT 73 (276)
Q Consensus 52 ~~~~~QsIiisGeSGsGKTe~~ 73 (276)
..+-|-+|+..|.+|||||+++
T Consensus 133 l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 133 FEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HTTCCEEEEEESSTTSSHHHHH
T ss_pred hcCCceEEEEeCCCCCCCCEEe
Confidence 4678999999999999999986
No 387
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=83.71 E-value=0.53 Score=37.62 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=16.8
Q ss_pred eEEEeCCCCCChhHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il 77 (276)
.|++.|.+|+|||.....++
T Consensus 25 ~i~v~G~~~~GKSsli~~l~ 44 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALF 44 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 59999999999999766553
No 388
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=83.68 E-value=1 Score=42.38 Aligned_cols=34 Identities=29% Similarity=0.235 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHH
Q psy17386 39 VFALAEAAYSSLQNLDVNQSCVISGESGAGKTETT 73 (276)
Q Consensus 39 ifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~ 73 (276)
||.-........ ..+-|-||+..|.+|||||.++
T Consensus 125 Vf~~v~~lv~~~-l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 125 VFKEVGQLVQSS-LDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHHHHHHH-HTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHHHHHHHH-hCCcceEEEEECCCCCCCceEe
Confidence 554433333333 3678999999999999999987
No 389
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=83.64 E-value=0.69 Score=36.77 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=16.8
Q ss_pred eEEEeCCCCCChhHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il 77 (276)
.|++.|.+|+|||.....++
T Consensus 20 ki~v~G~~~~GKSsl~~~l~ 39 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFF 39 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999766554
No 390
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=83.62 E-value=0.67 Score=37.56 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=18.1
Q ss_pred CCceEEEeCCCCCChhHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il 77 (276)
+.=.|++.|.+|+|||.....++
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~ 41 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYL 41 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHh
Confidence 34469999999999999765544
No 391
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=83.60 E-value=0.61 Score=39.56 Aligned_cols=21 Identities=43% Similarity=0.624 Sum_probs=18.0
Q ss_pred ceEEEeCCCCCChhHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il 77 (276)
=.|++.|.+|+|||+....++
T Consensus 30 ~~i~lvG~~g~GKStlin~l~ 50 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSIL 50 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHc
Confidence 469999999999999877665
No 392
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=83.50 E-value=0.76 Score=43.58 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=24.6
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
...|++.|.+|+|||+++..+..+++..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~ 126 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKR 126 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3589999999999999999999988753
No 393
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=83.50 E-value=0.93 Score=42.13 Aligned_cols=22 Identities=32% Similarity=0.321 Sum_probs=19.5
Q ss_pred hcCCCceEEEeCCCCCChhHHH
Q psy17386 52 NLDVNQSCVISGESGAGKTETT 73 (276)
Q Consensus 52 ~~~~~QsIiisGeSGsGKTe~~ 73 (276)
..+-|-+|+..|.+|||||.++
T Consensus 86 l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 86 FEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HTTCCEEEEEECSTTSSHHHHH
T ss_pred hcCCeeEEEEeCCCCCCCceEe
Confidence 3678999999999999999875
No 394
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=83.49 E-value=0.7 Score=36.51 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=17.2
Q ss_pred ceEEEeCCCCCChhHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il 77 (276)
=.|++.|.+|+|||.....++
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~ 33 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFV 33 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHH
Confidence 358999999999999765554
No 395
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=83.48 E-value=1.7 Score=39.58 Aligned_cols=41 Identities=20% Similarity=0.158 Sum_probs=30.5
Q ss_pred HHHHHHHHhHh-cCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 42 LAEAAYSSLQN-LDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 42 vA~~Ay~~m~~-~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.++.....+.. ..+.-.|+++|.+|+|||+.+..+...++.
T Consensus 64 ~~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 64 QAQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp HHHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34444444432 345678999999999999999999988864
No 396
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=83.48 E-value=0.67 Score=36.15 Aligned_cols=19 Identities=32% Similarity=0.541 Sum_probs=16.0
Q ss_pred eEEEeCCCCCChhHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFI 76 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~i 76 (276)
.|++.|.+|+|||.....+
T Consensus 4 ki~ivG~~~~GKSsli~~l 22 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTF 22 (169)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3899999999999976654
No 397
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=83.44 E-value=0.72 Score=36.40 Aligned_cols=20 Identities=30% Similarity=0.375 Sum_probs=16.6
Q ss_pred eEEEeCCCCCChhHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il 77 (276)
.|++.|.+|+|||.....++
T Consensus 12 ~i~v~G~~~~GKssli~~l~ 31 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFK 31 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 58999999999999765543
No 398
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=83.43 E-value=0.65 Score=38.02 Aligned_cols=43 Identities=14% Similarity=0.153 Sum_probs=29.6
Q ss_pred CCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 34 SQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 34 ~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
..+|..| =.+|+..+... +.+++.+++|+|||..+-.++..+.
T Consensus 31 ~~~l~~~--Q~~~i~~~~~~---~~~li~~~tGsGKT~~~~~~~~~~~ 73 (216)
T 3b6e_A 31 ELQLRPY--QMEVAQPALEG---KNIIICLPTGSGKTRVAVYIAKDHL 73 (216)
T ss_dssp CCCCCHH--HHHHHHHHHTT---CCEEEECSCHHHHHHHHHHHHHHHH
T ss_pred CCCchHH--HHHHHHHHhcC---CCEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3444444 34556656543 5699999999999999887766554
No 399
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=83.41 E-value=0.93 Score=40.70 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=24.0
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
..+.++|.|.+|+|||..+..+....+.
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~ 94 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSD 94 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 5689999999999999998888776654
No 400
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=83.38 E-value=1.7 Score=41.48 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=22.4
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...|++.|.+|+|||+.++.+-+.+
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999988776
No 401
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=83.35 E-value=0.65 Score=45.99 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=22.6
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
...+.+.+.|++|||||+..|.+.-.+
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 456889999999999999988876554
No 402
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=83.35 E-value=0.63 Score=37.05 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=16.9
Q ss_pred eEEEeCCCCCChhHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il 77 (276)
.|++.|.+|+|||...+.++
T Consensus 12 ki~v~G~~~~GKSsli~~l~ 31 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFI 31 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999766553
No 403
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=83.26 E-value=0.86 Score=42.30 Aligned_cols=22 Identities=36% Similarity=0.367 Sum_probs=19.6
Q ss_pred hcCCCceEEEeCCCCCChhHHH
Q psy17386 52 NLDVNQSCVISGESGAGKTETT 73 (276)
Q Consensus 52 ~~~~~QsIiisGeSGsGKTe~~ 73 (276)
..+-|-+|+..|.+|||||.++
T Consensus 100 l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 100 LDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HTTCCEEEEEEESTTSSHHHHH
T ss_pred hCCCceEEEEECCCCCCCceEe
Confidence 3678999999999999999974
No 404
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=83.22 E-value=0.72 Score=37.33 Aligned_cols=21 Identities=24% Similarity=0.499 Sum_probs=17.1
Q ss_pred ceEEEeCCCCCChhHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il 77 (276)
=.|++.|.+|+|||.....++
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~ 35 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFM 35 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 358999999999999765544
No 405
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=83.18 E-value=1.3 Score=36.69 Aligned_cols=61 Identities=18% Similarity=0.263 Sum_probs=34.5
Q ss_pred CCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHH-HHHHHHHHH
Q psy17386 13 YKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTET-TKFILQYLC 81 (276)
Q Consensus 13 ~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~-~k~il~yL~ 81 (276)
|..+++ ++...+......... .+.+=.+|+..+... +.+++.+++|+|||.+ .-.+++.+.
T Consensus 16 f~~l~l-~~~l~~~l~~~g~~~----~~~~Q~~~i~~~~~~---~~~lv~~pTGsGKT~~~~~~~l~~l~ 77 (224)
T 1qde_A 16 FDDMEL-DENLLRGVFGYGFEE----PSAIQQRAIMPIIEG---HDVLAQAQSGTGKTGTFSIAALQRID 77 (224)
T ss_dssp GGGGTC-CHHHHHHHHHHTCCS----CCHHHHHHHHHHHTT---CCEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred hhhcCC-CHHHHHHHHHCCCCC----CcHHHHHHHHHHhcC---CCEEEECCCCCcHHHHHHHHHHHHHh
Confidence 444443 455555444332222 233334556665543 4599999999999988 445555553
No 406
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=83.17 E-value=0.8 Score=42.41 Aligned_cols=22 Identities=36% Similarity=0.406 Sum_probs=19.7
Q ss_pred hcCCCceEEEeCCCCCChhHHH
Q psy17386 52 NLDVNQSCVISGESGAGKTETT 73 (276)
Q Consensus 52 ~~~~~QsIiisGeSGsGKTe~~ 73 (276)
..+-|-+|+..|.+|||||.++
T Consensus 102 l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 102 LNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp TTTCCEEEEEECCTTSSHHHHH
T ss_pred hCCCceEEEEeCCCCCCceeee
Confidence 3677999999999999999985
No 407
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=82.98 E-value=0.67 Score=36.38 Aligned_cols=21 Identities=29% Similarity=0.327 Sum_probs=17.1
Q ss_pred ceEEEeCCCCCChhHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il 77 (276)
=.|++.|.+|+|||.....++
T Consensus 15 ~~i~v~G~~~~GKssli~~l~ 35 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFM 35 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 358999999999999766554
No 408
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=82.92 E-value=0.59 Score=44.16 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=20.3
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL 80 (276)
..+.+.|++|||||+..+.++-.+
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 478899999999999988877643
No 409
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=82.89 E-value=0.83 Score=36.74 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=19.3
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQ 78 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~ 78 (276)
...=.|++.|.+|+|||.....++.
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHc
Confidence 3445799999999999997665543
No 410
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=82.88 E-value=0.77 Score=36.98 Aligned_cols=20 Identities=40% Similarity=0.514 Sum_probs=16.5
Q ss_pred eEEEeCCCCCChhHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il 77 (276)
.|++.|.+|+|||.....++
T Consensus 27 ki~v~G~~~~GKSsLi~~l~ 46 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFT 46 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 58999999999999765543
No 411
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=82.78 E-value=0.61 Score=37.52 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=18.2
Q ss_pred CceEEEeCCCCCChhHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il 77 (276)
.-.|++.|.+|+|||+....++
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~ 44 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLI 44 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3469999999999999876664
No 412
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=82.77 E-value=0.96 Score=41.95 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=19.4
Q ss_pred hcCCCceEEEeCCCCCChhHHH
Q psy17386 52 NLDVNQSCVISGESGAGKTETT 73 (276)
Q Consensus 52 ~~~~~QsIiisGeSGsGKTe~~ 73 (276)
..+-|-+|+..|.+|||||.++
T Consensus 85 l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 85 IMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HTTCEEEEEEEECTTSSHHHHH
T ss_pred hCCCceEEEEeCCCCCCCceEE
Confidence 3577999999999999999975
No 413
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=82.71 E-value=1.7 Score=39.39 Aligned_cols=40 Identities=15% Similarity=0.121 Sum_probs=30.2
Q ss_pred HHHHHHhH-hcCCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 44 EAAYSSLQ-NLDVNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 44 ~~Ay~~m~-~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
..+...+. ...+...|.++|.+|+|||+.+..+...+...
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~ 83 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE 83 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 34444432 34567889999999999999999999887653
No 414
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=82.67 E-value=0.8 Score=36.24 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=16.5
Q ss_pred eEEEeCCCCCChhHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il 77 (276)
.|++.|.+|+|||.....++
T Consensus 7 ~i~~~G~~~~GKssl~~~l~ 26 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYT 26 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999765543
No 415
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=82.65 E-value=1.1 Score=40.85 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=23.9
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.-.|.|.|.+|||||+....++..+..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~ 100 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTE 100 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence 567999999999999999999988754
No 416
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=82.64 E-value=0.62 Score=37.12 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=16.6
Q ss_pred eEEEeCCCCCChhHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il 77 (276)
.|++.|.+|+|||.....++
T Consensus 3 ki~v~G~~~~GKSsli~~l~ 22 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLT 22 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 38899999999999766554
No 417
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=82.64 E-value=0.78 Score=36.88 Aligned_cols=22 Identities=27% Similarity=0.225 Sum_probs=17.6
Q ss_pred CceEEEeCCCCCChhHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il 77 (276)
.=.|++.|.+|+|||.....++
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~ 41 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFC 41 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHH
Confidence 3469999999999999766543
No 418
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=82.61 E-value=2.6 Score=37.48 Aligned_cols=62 Identities=19% Similarity=0.298 Sum_probs=38.3
Q ss_pred ecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHH
Q psy17386 10 VNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 10 vNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il 77 (276)
+++|..+++ +++..+........ .| +.+=.+|+..+... .++.+++.+++|+|||...-..+
T Consensus 4 ~~~f~~~~l-~~~l~~~l~~~~~~--~~--~~~Q~~~i~~~~~~-~~~~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 4 AKSFDELGL-APELLKGIYAMKFQ--KP--SKIQERALPLLLHN-PPRNMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp CCSSTTSCC-CHHHHHHHHHTTCC--SC--CHHHHHHHHHHHCS-SCCCEEEECCTTSCHHHHHHHHH
T ss_pred ccCHhhCCC-CHHHHHHHHHCCCC--CC--CHHHHHHHHHHHcC-CCCeEEEECCCCCcHHHHHHHHH
Confidence 366777764 45555555443322 23 33344566666554 34679999999999999765433
No 419
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=82.47 E-value=0.78 Score=38.79 Aligned_cols=18 Identities=39% Similarity=0.669 Sum_probs=15.1
Q ss_pred eEEEeCCCCCChhHHHHH
Q psy17386 58 SCVISGESGAGKTETTKF 75 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~ 75 (276)
-++++|.+|||||..+..
T Consensus 7 i~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVS 24 (199)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHH
Confidence 468999999999997644
No 420
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=82.45 E-value=0.81 Score=36.70 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=17.0
Q ss_pred eEEEeCCCCCChhHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il 77 (276)
.|++.|.+|+|||.....++
T Consensus 18 ki~v~G~~~~GKSsli~~l~ 37 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFA 37 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 58999999999999766654
No 421
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=82.43 E-value=0.81 Score=42.29 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=19.8
Q ss_pred hcCCCceEEEeCCCCCChhHHH
Q psy17386 52 NLDVNQSCVISGESGAGKTETT 73 (276)
Q Consensus 52 ~~~~~QsIiisGeSGsGKTe~~ 73 (276)
..+-|-+|+..|.+|||||.++
T Consensus 74 l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 74 IQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HTTCCEEEEEEESTTSSHHHHH
T ss_pred HcCCccceeeecCCCCCCCeEE
Confidence 3678999999999999999986
No 422
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=82.41 E-value=0.85 Score=43.94 Aligned_cols=36 Identities=17% Similarity=0.259 Sum_probs=27.9
Q ss_pred HHHhHhc--CCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 47 YSSLQNL--DVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 47 y~~m~~~--~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
+..++.. .+...+.|.|++|||||+.++.+.-.+..
T Consensus 270 ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~ 307 (525)
T 1tf7_A 270 LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACA 307 (525)
T ss_dssp HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 3445443 36788999999999999999998877654
No 423
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=82.39 E-value=0.77 Score=36.13 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=16.6
Q ss_pred eEEEeCCCCCChhHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il 77 (276)
.|++.|.+|+|||.....++
T Consensus 8 ki~v~G~~~~GKssl~~~l~ 27 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFA 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 58999999999999766544
No 424
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=82.38 E-value=0.83 Score=36.08 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=17.1
Q ss_pred ceEEEeCCCCCChhHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il 77 (276)
=.|++.|.+|+|||.....++
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~ 29 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYT 29 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 358999999999999765544
No 425
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=82.37 E-value=0.64 Score=36.16 Aligned_cols=19 Identities=21% Similarity=0.555 Sum_probs=15.8
Q ss_pred eEEEeCCCCCChhHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFI 76 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~i 76 (276)
.|++.|.+|+|||...+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l 22 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIF 22 (166)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3899999999999976544
No 426
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=82.28 E-value=0.74 Score=44.91 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=22.2
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
+.+.+.|.|+||||||+..|.+.-.+.
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467889999999999999887766543
No 427
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=82.24 E-value=0.84 Score=36.84 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=16.8
Q ss_pred eEEEeCCCCCChhHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il 77 (276)
.|++.|.+|+|||.....++
T Consensus 23 ki~v~G~~~~GKSsli~~l~ 42 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFT 42 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHh
Confidence 58999999999999766554
No 428
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=82.07 E-value=1 Score=42.07 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=19.2
Q ss_pred cCCCceEEEeCCCCCChhHHH
Q psy17386 53 LDVNQSCVISGESGAGKTETT 73 (276)
Q Consensus 53 ~~~~QsIiisGeSGsGKTe~~ 73 (276)
.+-|-+|+..|.+|||||.++
T Consensus 99 ~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 99 QGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp TTCCEEEEEEESTTSSHHHHH
T ss_pred CCCeeeEEeecCCCCCCCEeE
Confidence 578999999999999999985
No 429
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=82.03 E-value=0.84 Score=37.03 Aligned_cols=20 Identities=35% Similarity=0.554 Sum_probs=16.9
Q ss_pred eEEEeCCCCCChhHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il 77 (276)
.|++.|.+|+|||.....++
T Consensus 10 ki~v~G~~~~GKSsli~~l~ 29 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYV 29 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 58999999999999766554
No 430
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=81.92 E-value=0.99 Score=41.75 Aligned_cols=21 Identities=38% Similarity=0.444 Sum_probs=19.3
Q ss_pred cCCCceEEEeCCCCCChhHHH
Q psy17386 53 LDVNQSCVISGESGAGKTETT 73 (276)
Q Consensus 53 ~~~~QsIiisGeSGsGKTe~~ 73 (276)
.+-|-+|+..|.+|||||.++
T Consensus 87 ~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 87 EGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp TTCCEEEEEECSTTSSHHHHH
T ss_pred CCCceeEEeecCCCCCCCEEe
Confidence 578999999999999999985
No 431
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=81.89 E-value=0.77 Score=36.08 Aligned_cols=19 Identities=32% Similarity=0.447 Sum_probs=16.1
Q ss_pred eEEEeCCCCCChhHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFI 76 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~i 76 (276)
.|++.|.+|+|||.....+
T Consensus 11 ~i~v~G~~~~GKssl~~~l 29 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRF 29 (181)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999976554
No 432
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=81.79 E-value=1.1 Score=42.33 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=25.4
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
..+.+++.|.+|+|||..+..+...++..
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~ 230 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK 230 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 56799999999999999999998887753
No 433
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=81.59 E-value=0.79 Score=36.75 Aligned_cols=20 Identities=30% Similarity=0.430 Sum_probs=16.8
Q ss_pred eEEEeCCCCCChhHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il 77 (276)
.|++.|.+|+|||...+.++
T Consensus 9 ki~v~G~~~vGKSsli~~l~ 28 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFA 28 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999876554
No 434
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=81.48 E-value=0.93 Score=36.44 Aligned_cols=20 Identities=25% Similarity=0.205 Sum_probs=16.8
Q ss_pred eEEEeCCCCCChhHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il 77 (276)
.|++.|.+|+|||.....++
T Consensus 24 ki~vvG~~~~GKSsli~~l~ 43 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYA 43 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999766543
No 435
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=81.41 E-value=0.94 Score=36.20 Aligned_cols=20 Identities=35% Similarity=0.425 Sum_probs=16.7
Q ss_pred eEEEeCCCCCChhHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il 77 (276)
.|++.|.+|+|||.....++
T Consensus 17 ~i~v~G~~~~GKssli~~l~ 36 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFT 36 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 59999999999999765553
No 436
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=81.25 E-value=1 Score=41.29 Aligned_cols=37 Identities=14% Similarity=0.067 Sum_probs=28.2
Q ss_pred HHHHhHh-cC--CCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 46 AYSSLQN-LD--VNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 46 Ay~~m~~-~~--~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.+..++. .+ +...++|.|++|+|||+.+..++..++.
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~ 87 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQA 87 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4445554 22 5678999999999999999988877654
No 437
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=81.20 E-value=1 Score=41.00 Aligned_cols=25 Identities=20% Similarity=0.086 Sum_probs=21.2
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~y 79 (276)
..+.++|.|++|+|||..+..+...
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5578899999999999988877654
No 438
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=81.18 E-value=0.96 Score=36.81 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=17.8
Q ss_pred CceEEEeCCCCCChhHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il 77 (276)
.=.|++.|.+|+|||.....++
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~ 49 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLC 49 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHH
Confidence 3469999999999999766554
No 439
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=81.18 E-value=1.8 Score=34.57 Aligned_cols=25 Identities=24% Similarity=0.213 Sum_probs=20.0
Q ss_pred cCCCceEEEeCCCCCChhHHHHHHH
Q psy17386 53 LDVNQSCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 53 ~~~~QsIiisGeSGsGKTe~~k~il 77 (276)
.++.=.|++.|.+|+|||.....++
T Consensus 13 ~~~~~~i~v~G~~~~GKssl~~~l~ 37 (187)
T 1zj6_A 13 NHQEHKVIIVGLDNAGKTTILYQFS 37 (187)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCccEEEEECCCCCCHHHHHHHHh
Confidence 4555679999999999999766554
No 440
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=81.06 E-value=0.96 Score=36.64 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=18.1
Q ss_pred CCceEEEeCCCCCChhHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il 77 (276)
..=.|++.|.+|+|||.....++
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~ 49 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFL 49 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 34569999999999999765544
No 441
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=81.04 E-value=0.98 Score=36.46 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=18.1
Q ss_pred CCceEEEeCCCCCChhHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il 77 (276)
..=.|++.|.+|+|||.....++
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~ 44 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFS 44 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHH
T ss_pred eeeEEEEECcCCCCHHHHHHHHh
Confidence 33469999999999999766544
No 442
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=81.03 E-value=0.55 Score=46.69 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.1
Q ss_pred CCceEEEeCCCCCChhHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il 77 (276)
..+.+.|.|+||||||+..+.++
T Consensus 347 ~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 347 LGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TTSEEEEECSTTSSHHHHHTTTH
T ss_pred CCCEEEEEeeCCCCHHHHHHHHH
Confidence 56889999999999999998664
No 443
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.03 E-value=1.2 Score=42.33 Aligned_cols=28 Identities=25% Similarity=0.321 Sum_probs=24.0
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
..+..|++.|.+|+|||..+|.+-..+-
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567899999999999999999887753
No 444
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=81.01 E-value=0.75 Score=39.45 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=19.1
Q ss_pred CceEEEeCCCCCChhHHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFILQ 78 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~ 78 (276)
.=.|++.|.+|+|||+....++.
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHhC
Confidence 34699999999999998777653
No 445
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=80.95 E-value=1.5 Score=38.01 Aligned_cols=32 Identities=28% Similarity=0.506 Sum_probs=21.9
Q ss_pred HHHHhHhcCC-CceEEEeCCCCCChhHHHHHHH
Q psy17386 46 AYSSLQNLDV-NQSCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 46 Ay~~m~~~~~-~QsIiisGeSGsGKTe~~k~il 77 (276)
..+.+..... .=.|++.|.+|+|||+....++
T Consensus 28 ~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~ 60 (270)
T 1h65_A 28 LLGNLKQEDVNSLTILVMGKGGVGKSSTVNSII 60 (270)
T ss_dssp HHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHh
Confidence 3334443333 4479999999999999766654
No 446
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=80.94 E-value=0.98 Score=36.51 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=17.6
Q ss_pred CceEEEeCCCCCChhHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il 77 (276)
.=.|++.|.+|+|||.....++
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~ 42 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFL 42 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHH
Confidence 3469999999999999765544
No 447
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=80.85 E-value=0.93 Score=36.80 Aligned_cols=19 Identities=32% Similarity=0.265 Sum_probs=16.0
Q ss_pred eEEEeCCCCCChhHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFI 76 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~i 76 (276)
.|++.|.+|+|||.....+
T Consensus 10 ki~v~G~~~~GKSsli~~l 28 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRY 28 (203)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999976554
No 448
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=80.69 E-value=1 Score=35.89 Aligned_cols=17 Identities=35% Similarity=0.346 Sum_probs=15.0
Q ss_pred eEEEeCCCCCChhHHHH
Q psy17386 58 SCVISGESGAGKTETTK 74 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k 74 (276)
.|++.|.+|+|||...+
T Consensus 16 ki~vvG~~~~GKssL~~ 32 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLK 32 (198)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999999754
No 449
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=80.68 E-value=1.1 Score=36.65 Aligned_cols=31 Identities=23% Similarity=0.200 Sum_probs=21.5
Q ss_pred HHHHhHhcCCCceEEEeCCCCCChhHHHHHH
Q psy17386 46 AYSSLQNLDVNQSCVISGESGAGKTETTKFI 76 (276)
Q Consensus 46 Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~i 76 (276)
+++.+-...+.=.|++.|.+|+|||...+.+
T Consensus 15 ~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l 45 (198)
T 1f6b_A 15 VLQFLGLYKKTGKLVFLGLDNAGKTTLLHML 45 (198)
T ss_dssp HHHHHTCTTCCEEEEEEEETTSSHHHHHHHH
T ss_pred HHHHhhccCCCcEEEEECCCCCCHHHHHHHH
Confidence 3444433334456999999999999976654
No 450
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=80.67 E-value=1.9 Score=35.14 Aligned_cols=55 Identities=9% Similarity=0.148 Sum_probs=32.3
Q ss_pred CCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHH
Q psy17386 13 YKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKF 75 (276)
Q Consensus 13 ~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~ 75 (276)
|..++ .+++..+......... | +.+=.+|+..+... +.+++.+++|+|||.+.-.
T Consensus 5 f~~~~-l~~~l~~~l~~~g~~~--~--~~~Q~~~i~~~~~~---~~~lv~apTGsGKT~~~~~ 59 (206)
T 1vec_A 5 FEDYC-LKRELLMGIFEMGWEK--P--SPIQEESIPIALSG---RDILARAKNGTGKSGAYLI 59 (206)
T ss_dssp GGGSC-CCHHHHHHHHTTTCCS--C--CHHHHHHHHHHHTT---CCEEEECCSSSTTHHHHHH
T ss_pred hhhcC-CCHHHHHHHHHCCCCC--C--CHHHHHHHHHHccC---CCEEEECCCCCchHHHHHH
Confidence 44444 2455565555433222 2 23334566665543 4599999999999987653
No 451
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=80.63 E-value=0.68 Score=45.72 Aligned_cols=22 Identities=14% Similarity=0.271 Sum_probs=19.8
Q ss_pred EEEeCCCCCChhHHHHHHHHHH
Q psy17386 59 CVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 59 IiisGeSGsGKTe~~k~il~yL 80 (276)
|.+.|+||||||+..+.+.-.+
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC
T ss_pred EEEECCCCChHHHHHHHHhCCC
Confidence 8999999999999999888764
No 452
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=80.57 E-value=2.4 Score=40.16 Aligned_cols=44 Identities=18% Similarity=0.100 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 39 VFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 39 ifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
...+.-+|...|.--.+-|.+.|.|.+|+|||+.++.|.+....
T Consensus 158 ~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~ 201 (427)
T 3l0o_A 158 PKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAE 201 (427)
T ss_dssp TTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred chhccchhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhh
Confidence 45778899999988899999999999999999999999988653
No 453
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=80.52 E-value=0.95 Score=35.85 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=18.3
Q ss_pred CCCceEEEeCCCCCChhHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFI 76 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~i 76 (276)
.+.=.|++.|.+|+|||+....+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l 38 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRL 38 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHH
Confidence 45567999999999999975443
No 454
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=80.47 E-value=0.92 Score=35.93 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=16.9
Q ss_pred eEEEeCCCCCChhHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il 77 (276)
.|++.|.+|+|||.....++
T Consensus 8 ki~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 58999999999999766554
No 455
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=80.42 E-value=0.46 Score=51.23 Aligned_cols=28 Identities=21% Similarity=0.447 Sum_probs=24.7
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
...|.|-|.|+||||||+..+.+++++-
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1130 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLERFYD 1130 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTTSSC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCcc
Confidence 4568999999999999999999998864
No 456
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=80.38 E-value=1.1 Score=36.19 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=17.7
Q ss_pred CceEEEeCCCCCChhHHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il 77 (276)
.=.|++.|.+|+|||.....++
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~ 43 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIA 43 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHH
Confidence 3459999999999999766554
No 457
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=80.30 E-value=0.82 Score=36.14 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=16.4
Q ss_pred eEEEeCCCCCChhHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il 77 (276)
-|++.|.+|+|||.....++
T Consensus 9 ki~~vG~~~vGKTsli~~l~ 28 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFL 28 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999765543
No 458
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=80.27 E-value=1.3 Score=40.97 Aligned_cols=35 Identities=26% Similarity=0.260 Sum_probs=24.9
Q ss_pred chhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHH
Q psy17386 38 HVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETT 73 (276)
Q Consensus 38 HifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~ 73 (276)
.||.-....... ...+-|-||+..|.+|||||.++
T Consensus 69 ~vf~~v~~lv~~-~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 69 EIFEEIRQLVQS-SLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHHHHHHHHHG-GGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHH-HHCCcceeEEEeCCCCCCCceEe
Confidence 356543332222 23578999999999999999987
No 459
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=80.23 E-value=0.93 Score=36.68 Aligned_cols=21 Identities=19% Similarity=0.389 Sum_probs=17.1
Q ss_pred ceEEEeCCCCCChhHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il 77 (276)
=.|++.|.+|+|||.....++
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~ 44 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFV 44 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHh
Confidence 359999999999999765554
No 460
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=80.21 E-value=0.94 Score=42.87 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=19.4
Q ss_pred hcCCCceEEEeCCCCCChhHHH
Q psy17386 52 NLDVNQSCVISGESGAGKTETT 73 (276)
Q Consensus 52 ~~~~~QsIiisGeSGsGKTe~~ 73 (276)
..+-|-+|+..|.+|||||.++
T Consensus 151 l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 151 FEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HTTCEEEEEEEESTTSSHHHHH
T ss_pred hcCCceeEEeecCCCCCCCeEe
Confidence 3577899999999999999985
No 461
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=80.09 E-value=1.2 Score=41.24 Aligned_cols=40 Identities=15% Similarity=0.062 Sum_probs=30.9
Q ss_pred HHHHHHHhHh-cC--CCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 43 AEAAYSSLQN-LD--VNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 43 A~~Ay~~m~~-~~--~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
.-..+..++. .+ ....++|.|++|+|||+.+..++..++.
T Consensus 45 G~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~ 87 (356)
T 3hr8_A 45 GSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQK 87 (356)
T ss_dssp SCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3345666665 33 5678999999999999999998887664
No 462
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=80.06 E-value=1.5 Score=42.29 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=20.9
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL 80 (276)
..|++.|++|+|||..++.+-+.+
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred CeeEeecCchHHHHHHHHHHHHHH
Confidence 579999999999999988876655
No 463
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=79.89 E-value=1.1 Score=42.38 Aligned_cols=34 Identities=26% Similarity=0.316 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHH
Q psy17386 39 VFALAEAAYSSLQNLDVNQSCVISGESGAGKTETT 73 (276)
Q Consensus 39 ifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~ 73 (276)
||.......... ..+-|-||+..|.+|||||.++
T Consensus 123 Vf~~v~plv~~~-l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 123 IFEMVSPLIQSA-LDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHTTTHHHHHHH-HTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHHHHHH-HCCCceEEEEecCCCCCCeeEe
Confidence 554333223333 3678999999999999999986
No 464
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=79.85 E-value=0.97 Score=36.84 Aligned_cols=31 Identities=19% Similarity=0.197 Sum_probs=18.2
Q ss_pred HHHHhHhcCCCceEEEeCCCCCChhHHHHHHH
Q psy17386 46 AYSSLQNLDVNQSCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 46 Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il 77 (276)
..+.|-. .+.=.|++.|.+|+|||.....++
T Consensus 15 ~~q~~~~-~~~~ki~vvG~~~~GKSsli~~l~ 45 (201)
T 3oes_A 15 YFQGMPL-VRYRKVVILGYRCVGKTSLAHQFV 45 (201)
T ss_dssp ---------CEEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCCC-CCcEEEEEECCCCcCHHHHHHHHH
Confidence 3444433 233459999999999999766655
No 465
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=79.85 E-value=1 Score=44.51 Aligned_cols=26 Identities=27% Similarity=0.288 Sum_probs=21.8
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
..+.+.|.|++|||||+..|.+.-.+
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 46789999999999999988876543
No 466
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=79.84 E-value=1.1 Score=44.53 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=19.8
Q ss_pred ceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~yL 80 (276)
+.+.|.|++|||||+..|.+.-.+
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Confidence 558899999999999888776543
No 467
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=79.75 E-value=1.1 Score=41.98 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=19.1
Q ss_pred cCCCceEEEeCCCCCChhHHH
Q psy17386 53 LDVNQSCVISGESGAGKTETT 73 (276)
Q Consensus 53 ~~~~QsIiisGeSGsGKTe~~ 73 (276)
.+-|-+|+..|.+|||||.++
T Consensus 132 ~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 132 EGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp TTCEEEEEEESCTTSSHHHHH
T ss_pred cCCceEEEEecCCCCCCCeEe
Confidence 567899999999999999985
No 468
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=79.75 E-value=0.99 Score=36.39 Aligned_cols=20 Identities=30% Similarity=0.225 Sum_probs=17.0
Q ss_pred eEEEeCCCCCChhHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il 77 (276)
-|++.|.+|+|||.....++
T Consensus 25 ki~v~G~~~~GKSsli~~l~ 44 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYA 44 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHh
Confidence 59999999999999776654
No 469
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=79.74 E-value=0.98 Score=37.37 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=17.4
Q ss_pred eEEEeCCCCCChhHHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFILQ 78 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il~ 78 (276)
.|++.|.+|+|||...+.++.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 689999999999998766543
No 470
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=79.72 E-value=0.99 Score=36.81 Aligned_cols=20 Identities=25% Similarity=0.287 Sum_probs=16.5
Q ss_pred eEEEeCCCCCChhHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il 77 (276)
.|++.|.+|+|||.....++
T Consensus 10 ki~v~G~~~~GKSsli~~l~ 29 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFS 29 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999765543
No 471
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=79.70 E-value=0.96 Score=44.00 Aligned_cols=26 Identities=27% Similarity=0.288 Sum_probs=21.8
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
..+.+.|.|.+|||||+..|.+.-.+
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999988876543
No 472
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=79.70 E-value=1.4 Score=39.68 Aligned_cols=66 Identities=20% Similarity=0.250 Sum_probs=37.0
Q ss_pred ecCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHH-HHHHHHH
Q psy17386 10 VNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTK-FILQYLC 81 (276)
Q Consensus 10 vNP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k-~il~yL~ 81 (276)
+.+|..+++ ++...+......... |.. +=.+|+..+... .++.+++.+++|+|||...- .+++.+.
T Consensus 24 ~~~f~~~~l-~~~l~~~l~~~g~~~--~~~--~Q~~~i~~~~~~-~~~~~lv~apTGsGKT~~~~~~~~~~~~ 90 (412)
T 3fht_A 24 VKSFEELRL-KPQLLQGVYAMGFNR--PSK--IQENALPLMLAE-PPQNLIAQSQSGTGKTAAFVLAMLSQVE 90 (412)
T ss_dssp SSCTGGGTC-CHHHHHHHHHTTCCS--CCH--HHHHHHHHHHSS-SCCCEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred cCCHhhCCC-CHHHHHHHHHcCCCC--CCH--HHHHHHHHHhcC-CCCeEEEECCCCchHHHHHHHHHHHHhh
Confidence 334444442 345555444332222 322 334456555553 45779999999999999863 4455543
No 473
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=79.66 E-value=1.1 Score=35.80 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=18.3
Q ss_pred CCCceEEEeCCCCCChhHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il 77 (276)
.+.=.|++.|.+|+|||.....++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~ 39 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFN 39 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHh
Confidence 344579999999999999765543
No 474
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=79.66 E-value=1.7 Score=36.02 Aligned_cols=61 Identities=15% Similarity=0.229 Sum_probs=35.3
Q ss_pred CCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHH-HHHHH
Q psy17386 12 PYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKF-ILQYL 80 (276)
Q Consensus 12 P~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~-il~yL 80 (276)
.|..++ .++...+......... | +.+=.+|...+... +.+++.+++|+|||.+.-. +++.+
T Consensus 5 ~f~~~~-l~~~l~~~l~~~g~~~--~--~~~Q~~~i~~~~~~---~~~lv~a~TGsGKT~~~~~~~l~~l 66 (219)
T 1q0u_A 5 QFTRFP-FQPFIIEAIKTLRFYK--P--TEIQERIIPGALRG---ESMVGQSQTGTGKTHAYLLPIMEKI 66 (219)
T ss_dssp CGGGSC-CCHHHHHHHHHTTCCS--C--CHHHHHHHHHHHHT---CCEEEECCSSHHHHHHHHHHHHHHC
T ss_pred CHhhCC-CCHHHHHHHHHCCCCC--C--CHHHHHHHHHHhCC---CCEEEECCCCChHHHHHHHHHHHHH
Confidence 444554 3455665555433322 2 23334555555543 4589999999999998543 44444
No 475
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=79.62 E-value=0.89 Score=36.56 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=17.0
Q ss_pred CceEEEeCCCCCChhHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFI 76 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~i 76 (276)
.=.|++.|.+|+|||...+.+
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l 36 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQL 36 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 346999999999999976554
No 476
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=79.61 E-value=1 Score=40.47 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=21.9
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQYL 80 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~yL 80 (276)
....++|.|++|+|||..+..+....
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 45789999999999999988877653
No 477
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=79.58 E-value=2.1 Score=35.89 Aligned_cols=39 Identities=15% Similarity=0.176 Sum_probs=26.3
Q ss_pred hHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHH-HHHHHH
Q psy17386 40 FALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKF-ILQYLC 81 (276)
Q Consensus 40 favA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~-il~yL~ 81 (276)
+.+=.+|+..+... +.+++.+++|+|||.+.-. +++.+.
T Consensus 49 ~~~Q~~~i~~~~~~---~~~li~a~TGsGKT~~~~~~~l~~l~ 88 (236)
T 2pl3_A 49 TEIQKQTIGLALQG---KDVLGAAKTGSGKTLAFLVPVLEALY 88 (236)
T ss_dssp CHHHHHHHHHHHTT---CCEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCC---CCEEEEeCCCCcHHHHHHHHHHHHHH
Confidence 33445566666543 4599999999999998654 455554
No 478
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=79.58 E-value=1.4 Score=40.70 Aligned_cols=22 Identities=32% Similarity=0.282 Sum_probs=19.8
Q ss_pred hcCCCceEEEeCCCCCChhHHH
Q psy17386 52 NLDVNQSCVISGESGAGKTETT 73 (276)
Q Consensus 52 ~~~~~QsIiisGeSGsGKTe~~ 73 (276)
..+-|-+|+..|.+|||||.++
T Consensus 81 l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 81 LDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp GGTCCEEEEEECCTTSSHHHHH
T ss_pred cCCceeEEEEECCCCCCCcEec
Confidence 3678999999999999999986
No 479
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=79.35 E-value=1.1 Score=36.24 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=17.2
Q ss_pred ceEEEeCCCCCChhHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il 77 (276)
=.|++.|.+|+|||.....++
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~ 41 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYT 41 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 358999999999999766554
No 480
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=79.30 E-value=1.3 Score=35.37 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=17.7
Q ss_pred ceEEEeCCCCCChhHHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFILQ 78 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il~ 78 (276)
.-.+|.|++|||||.....|.-
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999998765543
No 481
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=79.29 E-value=1.3 Score=42.82 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=24.5
Q ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 56 NQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
...|++.|.+|+|||+++..+..+|...
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 4579999999999999999999998864
No 482
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=79.21 E-value=0.46 Score=43.13 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=21.3
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~y 79 (276)
...+.+.+.|.||+|||+..+.++-.
T Consensus 171 ~~G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 171 FQDKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp GTTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred cCCCEEEEECCCCCCHHHHHHHhccc
Confidence 35689999999999999988877644
No 483
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=79.18 E-value=0.92 Score=40.74 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=17.7
Q ss_pred ceEEEeCCCCCChhHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il 77 (276)
...+|.|++|||||...+.|.
T Consensus 25 g~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 25 RVTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp SEEEEECCTTTCSTHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHH
Confidence 378899999999999887744
No 484
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=79.13 E-value=1 Score=41.43 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=16.8
Q ss_pred ceEEEeCCCCCChhHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il 77 (276)
.-.+|+|++|||||+....|.
T Consensus 24 g~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 357799999999999875544
No 485
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=79.08 E-value=1 Score=36.88 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=17.4
Q ss_pred ceEEEeCCCCCChhHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il 77 (276)
=.|++.|.+|+|||...+.++
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~ 46 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFI 46 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHH
Confidence 358999999999999876654
No 486
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=78.97 E-value=1.1 Score=36.86 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=17.4
Q ss_pred ceEEEeCCCCCChhHHHHHHH
Q psy17386 57 QSCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 57 QsIiisGeSGsGKTe~~k~il 77 (276)
-.|++.|.+|+|||.....++
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~ 46 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFS 46 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHh
Confidence 469999999999999765554
No 487
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=78.93 E-value=1.1 Score=36.29 Aligned_cols=19 Identities=32% Similarity=0.499 Sum_probs=16.2
Q ss_pred eEEEeCCCCCChhHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFI 76 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~i 76 (276)
.|++.|.+|+|||.....+
T Consensus 28 ki~vvG~~~~GKSsLi~~l 46 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERF 46 (192)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4899999999999976554
No 488
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.89 E-value=1.5 Score=41.71 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=24.1
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
..+-.|++.|.+|+|||..+|.+-..+-
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 3467899999999999999999888753
No 489
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=78.86 E-value=1.6 Score=40.30 Aligned_cols=38 Identities=16% Similarity=0.077 Sum_probs=28.8
Q ss_pred HHHHhHh-c--CCCceEEEeCCCCCChhHHHHHHHHHHHhh
Q psy17386 46 AYSSLQN-L--DVNQSCVISGESGAGKTETTKFILQYLCSV 83 (276)
Q Consensus 46 Ay~~m~~-~--~~~QsIiisGeSGsGKTe~~k~il~yL~~~ 83 (276)
.+..++. . .....++|.|++|+|||+.+..+...++..
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~ 90 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE 90 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 4555554 2 256789999999999999998888776643
No 490
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=78.85 E-value=0.9 Score=36.53 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=17.0
Q ss_pred CceEEEeCCCCCChhHHHHHH
Q psy17386 56 NQSCVISGESGAGKTETTKFI 76 (276)
Q Consensus 56 ~QsIiisGeSGsGKTe~~k~i 76 (276)
.-.|++.|.+|+|||.....+
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l 37 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQV 37 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 346999999999999876554
No 491
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=78.83 E-value=1 Score=37.74 Aligned_cols=20 Identities=15% Similarity=0.464 Sum_probs=17.5
Q ss_pred EEEeCCCCCChhHHHHHHHH
Q psy17386 59 CVISGESGAGKTETTKFILQ 78 (276)
Q Consensus 59 IiisGeSGsGKTe~~k~il~ 78 (276)
|+|+|-+|||||.-+..+..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~ 21 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIG 21 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHC
T ss_pred EEEECCCCCcHHHHHHHHHh
Confidence 78999999999999887654
No 492
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=78.79 E-value=1.8 Score=37.13 Aligned_cols=36 Identities=25% Similarity=0.154 Sum_probs=24.3
Q ss_pred HHHHHHhHhcCCCceEEEeCCCCCChhHHHH-HHHHHHHh
Q psy17386 44 EAAYSSLQNLDVNQSCVISGESGAGKTETTK-FILQYLCS 82 (276)
Q Consensus 44 ~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k-~il~yL~~ 82 (276)
.+|+..+..+ +.+++.+++|+|||.+.- .+++.+..
T Consensus 71 ~~~i~~i~~~---~~~lv~a~TGsGKT~~~~~~il~~l~~ 107 (249)
T 3ber_A 71 IEAIPLALQG---RDIIGLAETGSGKTGAFALPILNALLE 107 (249)
T ss_dssp HHHHHHHHTT---CCEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC---CCEEEEcCCCCCchhHhHHHHHHHHhc
Confidence 4455555543 569999999999999854 34444443
No 493
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=78.77 E-value=1.3 Score=36.11 Aligned_cols=20 Identities=25% Similarity=0.395 Sum_probs=16.8
Q ss_pred eEEEeCCCCCChhHHHHHHH
Q psy17386 58 SCVISGESGAGKTETTKFIL 77 (276)
Q Consensus 58 sIiisGeSGsGKTe~~k~il 77 (276)
.|++.|.+|+|||.....++
T Consensus 22 ~i~v~G~~~~GKSsli~~l~ 41 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFV 41 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999766554
No 494
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.66 E-value=1.6 Score=41.59 Aligned_cols=28 Identities=18% Similarity=0.232 Sum_probs=24.0
Q ss_pred CCCceEEEeCCCCCChhHHHHHHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFILQYLC 81 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~il~yL~ 81 (276)
..+-.|++.|.+|+|||..+|.+-..+-
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence 3467899999999999999999887753
No 495
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=78.65 E-value=1.3 Score=41.01 Aligned_cols=23 Identities=17% Similarity=0.188 Sum_probs=20.8
Q ss_pred CCCceEEEeCCCCCChhHHHHHH
Q psy17386 54 DVNQSCVISGESGAGKTETTKFI 76 (276)
Q Consensus 54 ~~~QsIiisGeSGsGKTe~~k~i 76 (276)
++..-|++.|-+|||||+.+|.+
T Consensus 31 ~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHH
Confidence 45688999999999999999987
No 496
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=78.63 E-value=1.7 Score=41.93 Aligned_cols=44 Identities=14% Similarity=0.151 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHHHHh
Q psy17386 39 VFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCS 82 (276)
Q Consensus 39 ifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~ 82 (276)
+....-++...|..-.+.|.++|.|.||+|||+.++.++.....
T Consensus 134 ~l~TGir~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~ 177 (473)
T 1sky_E 134 ILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQ 177 (473)
T ss_dssp EECCSCHHHHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHhhhccCCEEEEECCCCCCccHHHHHHHhhhhh
Confidence 34444567777877778999999999999999999998887664
No 497
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=78.52 E-value=2.6 Score=35.50 Aligned_cols=40 Identities=23% Similarity=0.161 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHH-HHHHHHH
Q psy17386 39 VFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTK-FILQYLC 81 (276)
Q Consensus 39 ifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k-~il~yL~ 81 (276)
.+.+=.+|+..+... +.+++.+.+|+|||.+.- .+++.+.
T Consensus 52 ~~~~Q~~~i~~~~~~---~~~l~~a~TGsGKT~~~~l~~l~~l~ 92 (245)
T 3dkp_A 52 PTPIQMQAIPVMLHG---RELLASAPTGSGKTLAFSIPILMQLK 92 (245)
T ss_dssp CCHHHHHHHHHHHTT---CCEEEECCTTSCHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHhCC---CCEEEECCCCCcHHHHHHHHHHHHHh
Confidence 344445666666554 349999999999999854 3445543
No 498
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=78.52 E-value=2.1 Score=35.33 Aligned_cols=61 Identities=10% Similarity=0.092 Sum_probs=36.0
Q ss_pred cCCCCCCCCCHHHHHHhhcCcCCCCCCchhHHHHHHHHHhHhcCCCceEEEeCCCCCChhHHHHHHHHH
Q psy17386 11 NPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 11 NP~~~l~~Y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGeSGsGKTe~~k~il~y 79 (276)
.+|..+++ +++..+......... |..+ =.+|+..+... ..+++.+++|+|||.+.-..+-.
T Consensus 14 ~~f~~~~l-~~~l~~~l~~~g~~~--~~~~--Q~~~i~~~~~~---~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 14 SGFRDFLL-KPELLRAIVDCGFEH--PSEV--QHECIPQAILG---MDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp CCSTTSCC-CHHHHHHHHHTTCCC--CCHH--HHHHHHHHHTT---CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCHhhcCC-CHHHHHHHHHCCCCC--CCHH--HHHHHHHHhCC---CCEEEECCCCCchhhhhhHHHHH
Confidence 45666653 455655555432222 3333 34555555553 34999999999999887654443
No 499
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=78.51 E-value=1.3 Score=40.60 Aligned_cols=22 Identities=36% Similarity=0.341 Sum_probs=19.6
Q ss_pred hcCCCceEEEeCCCCCChhHHH
Q psy17386 52 NLDVNQSCVISGESGAGKTETT 73 (276)
Q Consensus 52 ~~~~~QsIiisGeSGsGKTe~~ 73 (276)
..+-|-+|+..|.+|||||.++
T Consensus 77 l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 77 IDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HTTCCEEEEEESSTTSSHHHHH
T ss_pred hCCCEEEEEeECCCCCCCcEEE
Confidence 3678999999999999999975
No 500
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=78.50 E-value=1.2 Score=39.80 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=21.0
Q ss_pred CCceEEEeCCCCCChhHHHHHHHHH
Q psy17386 55 VNQSCVISGESGAGKTETTKFILQY 79 (276)
Q Consensus 55 ~~QsIiisGeSGsGKTe~~k~il~y 79 (276)
..+.++|.|++|+|||..+..+...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5578999999999999988776654
Done!