RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17386
(276 letters)
>gnl|CDD|214580 smart00242, MYSc, Myosin. Large ATPases. ATPase; molecular motor.
Muscle contraction consists of a cyclical interaction
between myosin and actin. The core of the myosin
structure is similar in fold to that of kinesin.
Length = 677
Score = 277 bits (710), Expect = 9e-89
Identities = 100/170 (58%), Positives = 125/170 (73%), Gaps = 2/170 (1%)
Query: 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
TY G +LVAVNPYK+L IYT + +Y G G PHVFA+A+ AY ++ N NQS +
Sbjct: 37 TYIGLVLVAVNPYKQLPIYTDEVIKKYRGKSRGELPPHVFAIADNAYRNMLNDKENQSII 96
Query: 61 ISGESGAGKTETTKFILQYLCSVTSNVS--TWVEQQILEANTILEAFGNAKTVRNDNSSR 118
ISGESGAGKTE TK I+QYL SV+ + + VE QILE+N ILEAFGNAKT+RN+NSSR
Sbjct: 97 ISGESGAGKTENTKKIMQYLASVSGSNTEVGSVEDQILESNPILEAFGNAKTLRNNNSSR 156
Query: 119 FGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
FGKF+++ FD K I G I+ YLLE+SR+ Q+ GERNYH+FYQL+ A
Sbjct: 157 FGKFIEIHFDAKGKIIGAKIETYLLEKSRVVSQAKGERNYHIFYQLLAGA 206
Score = 118 bits (297), Expect = 5e-30
Identities = 42/64 (65%), Positives = 47/64 (73%)
Query: 193 FAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFA 252
F WLV IN + ST F+GVLDI+GFE F VNSFEQLCINY NEKL +FFN +VF
Sbjct: 350 FDWLVKRINQSLSFKDGSTYFIGVLDIYGFEIFEVNSFEQLCINYANEKLQQFFNQHVFK 409
Query: 253 LEQE 256
LEQE
Sbjct: 410 LEQE 413
>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 679
Score = 274 bits (704), Expect = 5e-88
Identities = 104/238 (43%), Positives = 136/238 (57%), Gaps = 14/238 (5%)
Query: 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
TY G IL+AVNPYK+L Y + +Y G PHVFA+A+ AY ++ NQS +
Sbjct: 31 TYAGPILIAVNPYKDLPNYGPETIRKYRGKSRSELPPHVFAIADRAYRNMLRDRRNQSII 90
Query: 61 ISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFG 120
ISGESGAGKTE TK I++YL S+ + T +E++IL AN ILEAFGNAKTVRN+NSSRFG
Sbjct: 91 ISGESGAGKTENTKLIMKYLASLAGSNDTGIEEKILAANPILEAFGNAKTVRNNNSSRFG 150
Query: 121 KFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINKEIMH 180
KF+++ FD I G I YLLE+SR+ Q PGERN+H+FYQL+ A S K+ +
Sbjct: 151 KFIELQFDETGKISGAKITTYLLEKSRVVSQEPGERNFHIFYQLLAGA--SPEERKK-LG 207
Query: 181 YTSEEKSHVIWVFAWLVNHINTCTNPGQ-DSTRF---LGVLDIFGFENFAVNSFEQLC 234
E +N G D+ F L GF + S ++
Sbjct: 208 LKRPESYR-------YLNQGGCNDVDGIDDAEEFEELKEALKSLGFSEEEIESIFRIL 258
Score = 121 bits (305), Expect = 5e-31
Identities = 39/66 (59%), Positives = 47/66 (71%)
Query: 193 FAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFA 252
F W+V+ IN+ P + F+G+LDIFGFE F NSFEQLCINY NEKL +FFN +VF
Sbjct: 343 FDWIVSRINSSLKPKDGRSLFIGILDIFGFEIFEKNSFEQLCINYANEKLQQFFNQHVFK 402
Query: 253 LEQEIV 258
LEQE
Sbjct: 403 LEQEEY 408
>gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain).
Length = 679
Score = 244 bits (625), Expect = 2e-76
Identities = 94/171 (54%), Positives = 125/171 (73%), Gaps = 3/171 (1%)
Query: 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
TY+G +L++VNPYK L IYT+ + EY G + G PH+FALA+ AY + NQ V
Sbjct: 30 TYSGLVLISVNPYKRLPIYTEEPIGEYRGKRRGELPPHIFALADRAYRHMLRDKENQCIV 89
Query: 61 ISGESGAGKTETTKFILQYLCSVTSNVSTW---VEQQILEANTILEAFGNAKTVRNDNSS 117
ISGESGAGKTE TK ++QYL SV+ + + +E QIL++N ILEAFGNAKT+RN+NSS
Sbjct: 90 ISGESGAGKTENTKKLMQYLASVSGSTPSAVGPLEDQILQSNPILEAFGNAKTLRNNNSS 149
Query: 118 RFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
RFGKF+++ FD I G I+ YLLE+SR+ +Q+PGERN+H+FYQL+ A
Sbjct: 150 RFGKFIEIQFDATGSIVGGNIETYLLEKSRVVYQTPGERNFHIFYQLLAGA 200
Score = 97.8 bits (244), Expect = 5e-23
Identities = 39/65 (60%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
Query: 193 FAWLVNHIN-TCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVF 251
F W+V IN + Q + F+GVLDI+GFE F NSFEQLCINY NEKL +FFNH++F
Sbjct: 343 FDWIVGKINEALSAKLQKAAAFIGVLDIYGFEIFEKNSFEQLCINYANEKLQQFFNHHMF 402
Query: 252 ALEQE 256
LEQE
Sbjct: 403 KLEQE 407
>gnl|CDD|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins.
Myosins in this group have been associated with
functions in sensory systems such as vision and hearing.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 671
Score = 238 bits (608), Expect = 6e-74
Identities = 94/168 (55%), Positives = 125/168 (74%), Gaps = 1/168 (0%)
Query: 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
TYTG+ILVAVNPY+ L IYT ++ Y +G PH+FA+++ AY+++Q NQ +
Sbjct: 31 TYTGSILVAVNPYQILPIYTADEIKLYKNKSIGELPPHIFAISDNAYTNMQREKKNQCII 90
Query: 61 ISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFG 120
ISGESGAGKTE+TK ILQYL ++ S +W+EQQILEAN ILEAFGNAKT+RNDNSSRFG
Sbjct: 91 ISGESGAGKTESTKLILQYLAAI-SGKHSWIEQQILEANPILEAFGNAKTIRNDNSSRFG 149
Query: 121 KFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
K++ + F+ + I+G I+ YLLE+SRI Q+ ERNYH+FY ++
Sbjct: 150 KYIDIHFNKRGAIEGAKIEQYLLEKSRIVRQARDERNYHIFYCMLAGL 197
Score = 104 bits (261), Expect = 3e-25
Identities = 39/66 (59%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Query: 192 VFAWLVNHINTCTN-PGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYV 250
+F W+V IN P Q S +GVLDIFGFENF VNSFEQLCIN+ NE L +FF ++
Sbjct: 341 LFVWIVRKINAAIYKPVQQSRNSIGVLDIFGFENFDVNSFEQLCINFANENLQQFFVQHI 400
Query: 251 FALEQE 256
F LEQE
Sbjct: 401 FKLEQE 406
>gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins. Myosin
II mediates cortical contraction in cell motility, and
is the motor in smooth and skeletal muscle. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 693
Score = 235 bits (603), Expect = 5e-73
Identities = 96/173 (55%), Positives = 118/173 (68%), Gaps = 9/173 (5%)
Query: 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
TY+G VAVNPYK L IYT+ V Y G K PH+FA+A+ AY S+ NQS +
Sbjct: 36 TYSGLFCVAVNPYKRLPIYTEEVVEMYRGKKREEMPPHIFAIADNAYRSMLQDRENQSIL 95
Query: 61 ISGESGAGKTETTKFILQYLCSVTSNVSTW---------VEQQILEANTILEAFGNAKTV 111
I+GESGAGKTE TK ++QYL SV ++ +E QIL+AN ILEAFGNAKTV
Sbjct: 96 ITGESGAGKTENTKKVIQYLASVAASSKKKKQSGKGQGTLEDQILQANPILEAFGNAKTV 155
Query: 112 RNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQL 164
RNDNSSRFGKF+++ F I G I+ YLLE+SR+ FQ+ GERNYH+FYQL
Sbjct: 156 RNDNSSRFGKFIRIHFGNTGKIAGADIETYLLEKSRVVFQASGERNYHIFYQL 208
Score = 110 bits (278), Expect = 2e-27
Identities = 41/64 (64%), Positives = 46/64 (71%)
Query: 193 FAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFA 252
F WLV IN + Q F+GVLDI GFE F NSFEQLCINYTNEKL +FFNH++F
Sbjct: 355 FLWLVKRINKTLDTKQQRAYFIGVLDIAGFEIFDFNSFEQLCINYTNEKLQQFFNHHMFV 414
Query: 253 LEQE 256
LEQE
Sbjct: 415 LEQE 418
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 235 bits (602), Expect = 1e-70
Identities = 95/171 (55%), Positives = 121/171 (70%), Gaps = 3/171 (1%)
Query: 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
TY+G +L+AVNPY++L IYT + Y G EPHVFA+AE AY +L + NQ+ +
Sbjct: 97 TYSGLVLIAVNPYRDLGIYTDDIIQSYSGKNRLELEPHVFAIAEEAYRNLLSEKENQTII 156
Query: 61 ISGESGAGKTETTKFILQYLCSVTSNVSTW---VEQQILEANTILEAFGNAKTVRNDNSS 117
ISGESGAGKTE K I+QYL SVTS+ + +E+QIL N ILEAFGNAKTVRNDNSS
Sbjct: 157 ISGESGAGKTENAKRIMQYLASVTSSSTVEISSIEKQILATNPILEAFGNAKTVRNDNSS 216
Query: 118 RFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
RFGK++++ FD I G I+ YLLE+SR+ Q+ ERNYH+FYQL+
Sbjct: 217 RFGKYIKIEFDENGEICGAKIETYLLEKSRVVHQNKNERNYHIFYQLLAGD 267
Score = 107 bits (268), Expect = 5e-26
Identities = 38/65 (58%), Positives = 49/65 (75%)
Query: 192 VFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVF 251
+F W+V+ IN + ++ F+GVLDI+GFE F NSFEQLCINYTNEKL +FFN ++F
Sbjct: 408 LFDWIVDRINKSLDHSAAASNFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQHMF 467
Query: 252 ALEQE 256
LEQE
Sbjct: 468 KLEQE 472
>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins. Myosin I
generates movement at the leading edge in cell motility,
and class I myosins have been implicated in phagocytosis
and vesicle transport. Myosin I, an unconventional
myosin, does not form dimers. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the plus
end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 674
Score = 229 bits (585), Expect = 2e-70
Identities = 85/170 (50%), Positives = 119/170 (70%), Gaps = 2/170 (1%)
Query: 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
TY G +L++VNP+K+L IYT + Y G PH++ALA+ AY S+++ + NQ +
Sbjct: 31 TYIGPVLISVNPFKQLPIYTDETIELYKGKSRYELPPHIYALADNAYRSMKSENENQCVI 90
Query: 61 ISGESGAGKTETTKFILQYLCSVTSNVST--WVEQQILEANTILEAFGNAKTVRNDNSSR 118
ISGESGAGKTE K I+QY+ +V+ V+ IL++N +LEAFGNAKT+RN+NSSR
Sbjct: 91 ISGESGAGKTEAAKKIMQYIAAVSGGGQKVERVKDVILQSNPLLEAFGNAKTLRNNNSSR 150
Query: 119 FGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
FGK+M++ FD K G I +YLLE+SR+ Q+ GERN+H+FYQL+ A
Sbjct: 151 FGKYMEIQFDFKGDPVGGKITNYLLEKSRVVSQNKGERNFHIFYQLLAGA 200
Score = 80.7 bits (200), Expect = 3e-17
Identities = 32/65 (49%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 193 FAWLVNHINTCTNPGQDSTRF-LGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVF 251
F WLV+ IN +GVLDI+GFE F NSFEQ CINY NEKL + F
Sbjct: 346 FDWLVSRINKALQVKSPGKNKVIGVLDIYGFEIFQKNSFEQFCINYVNEKLQQIFIELTL 405
Query: 252 ALEQE 256
EQE
Sbjct: 406 KAEQE 410
>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins. Myosins
V transport a variety of intracellular cargo
processively along actin filaments, such as membraneous
organelles and mRNA. This catalytic (head) domain has
ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 691
Score = 226 bits (579), Expect = 2e-69
Identities = 96/202 (47%), Positives = 134/202 (66%), Gaps = 14/202 (6%)
Query: 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
TY+G +LVA+NPY L IY + + Y G + G +PH+FA+AE AY + + NQS +
Sbjct: 31 TYSGIVLVAINPYARLPIYGEEIIQAYSGQRKGELDPHIFAIAEEAYKQMTRDEKNQSII 90
Query: 61 ISGESGAGKTETTKFILQYLCSV----TSNVS-TWVEQQILEANTILEAFGNAKTVRNDN 115
+SGESGAGKT + K+I++Y SV + VS T VE+++L +N I+EAFGNAKT RNDN
Sbjct: 91 VSGESGAGKTVSAKYIMRYFASVGGSDSREVSETQVEEKVLASNPIMEAFGNAKTTRNDN 150
Query: 116 SSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSIN 175
SSRFGK++Q+ FD + I G ++ YLLE+SR+ FQ+PGERNYH+FYQL A S
Sbjct: 151 SSRFGKYIQILFDKRGRIIGANMRTYLLEKSRVVFQAPGERNYHIFYQLCAGA--PSQEL 208
Query: 176 KEI-------MHYTSEEKSHVI 190
KE+ +Y ++ + I
Sbjct: 209 KELHLGHADKFNYLNQGGAPTI 230
Score = 102 bits (257), Expect = 1e-24
Identities = 39/68 (57%), Positives = 47/68 (69%), Gaps = 3/68 (4%)
Query: 192 VFAWLVNHINTCTNPG---QDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNH 248
+F W+V+ IN N G + T F+GVLDI+GFE F NSFEQ CINY NEKL + FN
Sbjct: 345 LFDWIVDVINKSLNTGEVKKKQTSFIGVLDIYGFETFEKNSFEQFCINYANEKLQQQFNQ 404
Query: 249 YVFALEQE 256
+VF LEQE
Sbjct: 405 HVFKLEQE 412
>gnl|CDD|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI
myosin, involved in organelle transport. This catalytic
(head) domain has ATPase activity and belongs to the
larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 674
Score = 224 bits (572), Expect = 1e-68
Identities = 92/175 (52%), Positives = 121/175 (69%), Gaps = 8/175 (4%)
Query: 1 TYTGTILVAVNPYKEL-DIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSC 59
TYTG IL+AVNP++ L +Y + +Y GA +G PHVFA+A+AAY ++ N +QS
Sbjct: 32 TYTGNILIAVNPFQRLPHLYDVHMMEQYKGAALGELSPHVFAIADAAYRAMINEGKSQSI 91
Query: 60 VISGESGAGKTETTKFILQYLC-----SVTSNVSTWVEQQILEANTILEAFGNAKTVRND 114
++SGESGAGKTETTK +++YL + + VEQQ+LE+N +LEAFGNAKTVRN+
Sbjct: 92 LVSGESGAGKTETTKMLMRYLAYMGGRAGVEGRT--VEQQVLESNPVLEAFGNAKTVRNN 149
Query: 115 NSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQ 169
NSSRFGKF+++ FD I G I+ YLLE+SR+ S ERNYH FYQL A
Sbjct: 150 NSSRFGKFVEIQFDDYGRISGAAIRTYLLERSRVCQISDPERNYHCFYQLCAAPP 204
Score = 103 bits (259), Expect = 7e-25
Identities = 38/64 (59%), Positives = 45/64 (70%)
Query: 193 FAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFA 252
F WLVN IN+ DS +GVLDI+GFE+F NSFEQ CIN TNEKL + FN +VF
Sbjct: 348 FDWLVNKINSSIGQDPDSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFK 407
Query: 253 LEQE 256
+EQE
Sbjct: 408 MEQE 411
>gnl|CDD|238678 cd01382, MYSc_type_VI, Myosin motor domain, type VI myosins. Myosin
VI is a monomeric myosin, which moves towards the
minus-end of actin filaments, in contrast to most other
myosins. It has been implicated in endocytosis,
secretion, and cell migration. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the
minus end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 717
Score = 206 bits (527), Expect = 6e-62
Identities = 85/169 (50%), Positives = 120/169 (71%), Gaps = 2/169 (1%)
Query: 1 TYTGTILVAVNPYKELD-IYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSC 59
TY IL+AVNPY ++ +Y+ + +Y G +G+ PHVFA+A+ AY ++ L ++QS
Sbjct: 35 TYVANILIAVNPYFDIPKLYSSDTIKKYQGKSLGTLPPHVFAIADKAYRDMKVLKMSQSI 94
Query: 60 VISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRF 119
++SGESGAGKTE TKF+L+YL + ++ +I+EAN +LEAFGNAKTVRN+NSSRF
Sbjct: 95 IVSGESGAGKTENTKFVLRYLTE-SYGSGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRF 153
Query: 120 GKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
GKF+++ F+ K + G + YLLE+SRI QS ERNYH+FY+L A
Sbjct: 154 GKFVEIHFNEKNSVVGGFVSHYLLEKSRICVQSAEERNYHIFYRLCAGA 202
Score = 89.1 bits (221), Expect = 5e-20
Identities = 35/66 (53%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 192 VFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVF 251
+F +V+ +N C P + S+ F+GVLDI GFE F NSFEQ CINY NEKL +FFN +
Sbjct: 378 LFDHVVSRVNQCF-PFETSSNFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERIL 436
Query: 252 ALEQEI 257
EQE+
Sbjct: 437 KEEQEL 442
>gnl|CDD|238683 cd01387, MYSc_type_XV, Myosin motor domain, type XV myosins. In
vertebrates, myosin XV appears to be expressed in
sensory tissue and play a role in hearing. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 677
Score = 204 bits (521), Expect = 2e-61
Identities = 88/165 (53%), Positives = 117/165 (70%), Gaps = 1/165 (0%)
Query: 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
TY G+ILV+VNPYK IY +V +Y G +G PH+FA+A A++ + + NQ +
Sbjct: 32 TYIGSILVSVNPYKMFPIYGPEQVQQYAGRALGENPPHLFAIANLAFAKMLDAKQNQCVI 91
Query: 61 ISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFG 120
ISGESG+GKTE TK IL+YL ++ S + +QILEA +LEAFGNAKTVRNDNSSRFG
Sbjct: 92 ISGESGSGKTEATKLILRYLAAMNQGGSAVITEQILEATPLLEAFGNAKTVRNDNSSRFG 151
Query: 121 KFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLV 165
KF+++ + +I G I YLLE+SRI FQ+ ERNYH+FY+L+
Sbjct: 152 KFVEIFLEGG-VIVGAITSQYLLEKSRIVFQAKNERNYHIFYELL 195
Score = 87.3 bits (216), Expect = 2e-19
Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 4/79 (5%)
Query: 192 VFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVF 251
+F WL+ +N +P QD+ + +LDI+GFE+ + NSFEQLCINY NE L FN VF
Sbjct: 342 LFNWLITRVNALVSPTQDTLS-IAILDIYGFEDLSFNSFEQLCINYANENLQYLFNKIVF 400
Query: 252 ALEQEIVSISIKPRLELTE 270
EQE I+ +L+ TE
Sbjct: 401 QEEQEEY---IREQLDWTE 416
>gnl|CDD|238679 cd01383, MYSc_type_VIII, Myosin motor domain, plant-specific type
VIII myosins, a subgroup which has been associated with
endocytosis, cytokinesis, cell-to-cell coupling and
gating at plasmodesmata. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 677
Score = 185 bits (471), Expect = 4e-54
Identities = 85/168 (50%), Positives = 112/168 (66%), Gaps = 4/168 (2%)
Query: 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
T G +LVAVNP+KE+ +Y + Y S PHV+A+A+ AY+ + +VNQS +
Sbjct: 39 TKAGPVLVAVNPFKEVPLYGNDYIEAYRKKSNDS--PHVYAIADTAYNEMMRDEVNQSII 96
Query: 61 ISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFG 120
ISGESGAGKTET K +QYL S+ + +E +IL+ N ILEAFGNAKT RNDNSSRFG
Sbjct: 97 ISGESGAGKTETAKIAMQYLASLGG--GSGIEYEILQTNPILEAFGNAKTSRNDNSSRFG 154
Query: 121 KFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
K +++ F I G IQ +LLE+SR+ + GER+YH+FYQL A
Sbjct: 155 KLIEIHFSETGKISGAKIQTFLLEKSRVVQCARGERSYHIFYQLCAGA 202
Score = 81.8 bits (202), Expect = 2e-17
Identities = 35/66 (53%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 192 VFAWLVNHINTCTNPGQDST-RFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYV 250
+F WLV IN G+ T R + +LDI+GFE+F NSFEQ CINY NE+L + FN ++
Sbjct: 344 LFDWLVEQINKSLEVGKRRTGRSISILDIYGFESFDKNSFEQFCINYANERLQQHFNRHL 403
Query: 251 FALEQE 256
F LEQE
Sbjct: 404 FKLEQE 409
>gnl|CDD|238681 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins. Myosin
IX is a processive single-headed motor, which might play
a role in signalling. This catalytic (head) domain has
ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 692
Score = 184 bits (469), Expect = 9e-54
Identities = 87/171 (50%), Positives = 115/171 (67%), Gaps = 3/171 (1%)
Query: 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAK-MGSQEPHVFALAEAAYSSLQNLDVNQSC 59
TY G+ILVAVNP+K L IY V Y + +G PH+FA+A+ AY ++ VNQ
Sbjct: 38 TYAGSILVAVNPFKFLPIYNPKYVRLYENQQRLGKLPPHIFAIADVAYYNMLRKKVNQCI 97
Query: 60 VISGESGAGKTETTKFILQYLCSVTSNVSTW--VEQQILEANTILEAFGNAKTVRNDNSS 117
VISGESG+GKTE+T F++ +L +++ VEQ IL A +LEAFGNAKT N+NSS
Sbjct: 98 VISGESGSGKTESTNFLIHHLTALSQKGYAGSGVEQTILSAGPVLEAFGNAKTAHNNNSS 157
Query: 118 RFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
RFGKF+QV + M++G +++ YLLE+SRI Q ERNYHVFY L+ A
Sbjct: 158 RFGKFIQVNYRENGMVRGAVVEKYLLEKSRIVSQEKDERNYHVFYYLLLGA 208
Score = 73.8 bits (181), Expect = 8e-15
Identities = 36/69 (52%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 192 VFAWLVNHINTCTNPGQDST---RFLGVLDIFGFENFA-VNSFEQLCINYTNEKLHKFFN 247
+F W+V IN D +GVLDIFGFE+F NSFEQLCINY NE+L +FN
Sbjct: 353 LFDWIVLRINHALLNKDDVAVSGLSIGVLDIFGFEDFGRCNSFEQLCINYANEQLQYYFN 412
Query: 248 HYVFALEQE 256
++F LEQE
Sbjct: 413 QHIFKLEQE 421
>gnl|CDD|238675 cd01379, MYSc_type_III, Myosin motor domain, type III myosins.
Myosin III has been shown to play a role in the vision
process in insects and in hearing in mammals. Myosin
III, an unconventional myosin, does not form dimers.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 653
Score = 179 bits (455), Expect = 6e-52
Identities = 79/189 (41%), Positives = 120/189 (63%), Gaps = 5/189 (2%)
Query: 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
TY G IL+AVNP+++L +YT Y G K S PH+FA+A+AAY SL + +Q V
Sbjct: 31 TYVGDILIAVNPFQQLGLYTTQHSRLYTGQKRSSNPPHIFAIADAAYQSLVTYNQDQCIV 90
Query: 61 ISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFG 120
ISGESG+GKTE+ ++Q L + + ++++IL+ N+++EAFGNA+T NDNSSRFG
Sbjct: 91 ISGESGSGKTESAHLLVQQLTVLGKANNRTLQEKILQVNSLVEAFGNARTGINDNSSRFG 150
Query: 121 KFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINKEIMH 180
K++++ F + G I +YLLE+SR+ Q+ GE+N+H+FY + K++
Sbjct: 151 KYLEMKFTRSGAVVGARISEYLLEKSRVVHQAEGEKNFHIFYYIYAGLAE----EKKLAE 206
Query: 181 YT-SEEKSH 188
Y E K+
Sbjct: 207 YKLPESKTP 215
Score = 86.8 bits (215), Expect = 4e-19
Identities = 35/70 (50%), Positives = 48/70 (68%), Gaps = 5/70 (7%)
Query: 192 VFAWLVNHINTC----TNPGQDSTRF-LGVLDIFGFENFAVNSFEQLCINYTNEKLHKFF 246
+F+W+VN IN+ N S + +G+LDIFGFENF NSFEQLCIN NE++ +F
Sbjct: 348 LFSWIVNRINSLLKHDRNASNSSDQLNVGILDIFGFENFKKNSFEQLCINIANEQIQYYF 407
Query: 247 NHYVFALEQE 256
N ++FA EQ+
Sbjct: 408 NQHIFAWEQQ 417
>gnl|CDD|240229 PTZ00014, PTZ00014, myosin-A; Provisional.
Length = 821
Score = 174 bits (444), Expect = 9e-50
Identities = 75/165 (45%), Positives = 108/165 (65%), Gaps = 2/165 (1%)
Query: 6 ILVAVNPYKELDIYTQSKVCEYHGAKMGSQ-EPHVFALAEAAYSSLQNLDVNQSCVISGE 64
+LVA+NP+K+L T + Y AK + PHVF A A +L + +Q+ ++SGE
Sbjct: 132 LLVAINPFKDLGNTTNDWIRRYRDAKDSDKLPPHVFTTARRALENLHGVKKSQTIIVSGE 191
Query: 65 SGAGKTETTKFILQYLCS-VTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFGKFM 123
SGAGKTE TK I++Y S + N+ ++ I+ AN +LEAFGNAKT+RN+NSSRFG+FM
Sbjct: 192 SGAGKTEATKQIMRYFASSKSGNMDLKIQNAIMAANPVLEAFGNAKTIRNNNSSRFGRFM 251
Query: 124 QVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
Q+ + I+ I +LLE+SR+ Q ER+YH+FYQL++ A
Sbjct: 252 QLQLGEEGGIRYGSIVAFLLEKSRVVTQEDDERSYHIFYQLLKGA 296
Score = 76.2 bits (188), Expect = 1e-15
Identities = 30/64 (46%), Positives = 37/64 (57%)
Query: 192 VFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVF 251
+F W++ ++N P F+G+LDIFGFE F NS EQL IN TNE L K F VF
Sbjct: 442 LFLWIIRNLNATIEPPGGFKVFIGMLDIFGFEVFKNNSLEQLFINITNEMLQKNFVDIVF 501
Query: 252 ALEQ 255
E
Sbjct: 502 ERES 505
>gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 767
Score = 115 bits (290), Expect = 4e-29
Identities = 65/190 (34%), Positives = 98/190 (51%), Gaps = 4/190 (2%)
Query: 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
T G L+ +NP L +Y++ + G K PH+++LA+ AY +L +QS +
Sbjct: 31 TCAGPDLLVLNPMAPLALYSEKVPSMFRGCKAEDMPPHIYSLAQTAYRALLETRRDQSII 90
Query: 61 ISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEAN-TILEAFGNAKTVRNDNSSRF 119
G SGAGKT + K L+YL +V V + + A TILEAFGN T N N++RF
Sbjct: 91 FLGRSGAGKTTSCKHALEYLALAAGSVDGRVSVEKVRALFTILEAFGNVSTALNGNATRF 150
Query: 120 GKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINKEI- 178
+ + + FD I +Q LLE+SR+ + GE N+ VF QL+ A + E+
Sbjct: 151 TQILSLDFDQTGQIASASLQTMLLERSRVARRPNGETNFVVFSQLL--AGVDGDLRTELH 208
Query: 179 MHYTSEEKSH 188
+ +E S
Sbjct: 209 LEQMAESSSF 218
Score = 37.1 bits (86), Expect = 0.009
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 193 FAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFA------VNSFEQLCINYTNEKLHKFF 246
FA +V+ IN + S + ++D GF+N A +FE+LC NY E+L F
Sbjct: 354 FAAVVSLINRSISSSHHSIASIMLVDTPGFQNPASQGKDRAATFEELCHNYLQERLQLLF 413
Query: 247 NHYVFALEQE 256
+H F E
Sbjct: 414 HHRTFVQPLE 423
>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain. These
ATPases belong to the P-loop NTPase family and provide
the driving force in myosin and kinesin mediated
processes.
Length = 186
Score = 49.1 bits (117), Expect = 3e-07
Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 18/81 (22%)
Query: 54 DVNQSCVISGESGAGKTETTKF------ILQYLCSVTSNVSTWVEQQILEANTILEAFG- 106
N G++G+GKT T + I+ +++ A
Sbjct: 22 GYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTV-----------TDVIDLMDKGNANRT 70
Query: 107 NAKTVRNDNSSRFGKFMQVCF 127
A T N++SSR ++ F
Sbjct: 71 TAATAMNEHSSRSHSVFRIHF 91
Score = 30.2 bits (68), Expect = 0.84
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 207 GQDSTRFLGVLDIFGFENFAVNSFEQ 232
Q + ++D+ G E + E
Sbjct: 102 EQPKVGKINLVDLAGSERIDFSGAEG 127
>gnl|CDD|178479 PLN02891, PLN02891, IMP cyclohydrolase.
Length = 547
Score = 32.5 bits (74), Expect = 0.22
Identities = 40/172 (23%), Positives = 66/172 (38%), Gaps = 52/172 (30%)
Query: 11 NPYKELDIYTQSKVCE-----------YHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSC 59
NP+++ Y + E +HG +M + A+AA++ + N +C
Sbjct: 239 NPHQKAAFYVDKSLSEVNAGGIATAIQHHGKEMSYNN---YLDADAAWNCVSEFS-NPTC 294
Query: 60 VISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRF 119
V+ + C V S ILEA+ A VR D S F
Sbjct: 295 VVVKHTNP-------------CGVASR------------GDILEAYRLA--VRADPVSAF 327
Query: 120 GKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYS 171
G V F+ C + + L + R F+SP + +FY++V A +Y+
Sbjct: 328 GGI--VAFN-------CEVDEDLAREIR-EFRSPTDGETRMFYEIVVAPKYT 369
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only
detects a fraction of this vast family. The poorly
conserved N-terminal helix is missing from the
alignment.
Length = 148
Score = 31.2 bits (70), Expect = 0.31
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 56 NQSCVISGESGAGKTETTKFILQYL 80
+ +I G G+GKT + + + L
Sbjct: 2 GEVILIVGPPGSGKTTLARALAREL 26
>gnl|CDD|223873 COG0802, COG0802, Predicted ATPase or kinase [General function
prediction only].
Length = 149
Score = 30.7 bits (70), Expect = 0.47
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 60 VISGESGAGKTETTKFILQYLC---SVTS 85
++SG+ GAGKT + I + L +V S
Sbjct: 29 LLSGDLGAGKTTLVRGIAKGLGVDGNVKS 57
>gnl|CDD|222104 pfam13401, AAA_22, AAA domain.
Length = 124
Score = 29.5 bits (67), Expect = 0.67
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 10/56 (17%)
Query: 57 QSCVISGESGAGKTETTKFILQYLCSVT------SNVSTWVEQQILEANTILEAFG 106
V++GESG+GKT + + + L + ++ T + +L IL A G
Sbjct: 5 GIGVLTGESGSGKTTLLRRLARQLPNRRVVYVEAPSLGTPKD--LLR--KILRALG 56
>gnl|CDD|224557 COG1643, HrpA, HrpA-like helicases [DNA replication,
recombination, and repair].
Length = 845
Score = 31.1 bits (71), Expect = 0.71
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 18/43 (41%)
Query: 56 NQSCVISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEA 98
NQ +I GE+G+GKT T + Q +LE
Sbjct: 65 NQVVIIVGETGSGKT------------------TQLPQFLLEE 89
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function
prediction only].
Length = 534
Score = 31.1 bits (71), Expect = 0.71
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 52 NLDVNQSCVIS--GESGAGKTETTKFILQYL 80
+ D+ ++ GESG+GK+ T IL L
Sbjct: 30 SFDIEAGETLALVGESGSGKSVTALSILGLL 60
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 29.8 bits (68), Expect = 1.3
Identities = 9/31 (29%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 52 NLDVNQSCVIS--GESGAGKTETTKFILQYL 80
+ ++ + ++ GESG+GK+ K I+ L
Sbjct: 25 SFELKKGEILGIVGESGSGKSVLAKAIMGLL 55
>gnl|CDD|225398 COG2842, COG2842, Uncharacterized ATPase, putative transposase
[General function prediction only].
Length = 297
Score = 30.1 bits (68), Expect = 1.3
Identities = 18/72 (25%), Positives = 23/72 (31%), Gaps = 17/72 (23%)
Query: 56 NQSCVISGESGAGKTETTKFILQYLCSVTSNVSTW---------VEQQILEANTILEAFG 106
V+ G +G GKT+ K Y N V I+ A AFG
Sbjct: 94 GSLVVVYGYAGLGKTQAAK---NY-APSNPNALLIEADPSYTALVLILIICAA----AFG 145
Query: 107 NAKTVRNDNSSR 118
ND + R
Sbjct: 146 ATDGTINDLTER 157
>gnl|CDD|234063 TIGR02928, TIGR02928, orc1/cdc6 family replication initiation
protein. Members of this protein family are found
exclusively in the archaea. This set of DNA binding
proteins shows homology to the origin recognition
complex subunit 1/cell division control protein 6
family in eukaryotes. Several members may be found in
genome and interact with each other [DNA metabolism,
DNA replication, recombination, and repair].
Length = 365
Score = 29.9 bits (68), Expect = 1.4
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 58 SCVISGESGAGKTETTKFILQYLCSVTSN 86
+ I G++G GKT TK++++ L +
Sbjct: 42 NVFIYGKTGTGKTAVTKYVMKELEEAAED 70
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional.
Length = 1486
Score = 30.3 bits (69), Expect = 1.4
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 149 TFQSPGERNYHVFYQLVEAAQY---SSSINKEIMHYTSEEKSHVIWVF 193
+S +R+ FY+L+EA+ Y SS+I + + Y E S V F
Sbjct: 187 RLRSSSDRSK--FYRLIEASLYGGISSAITRSLRDYLLPENSGVRKAF 232
>gnl|CDD|238899 cd01918, HprK_C, HprK/P, the bifunctional histidine-containing
protein kinase/phosphatase, controls the
phosphorylation state of the phosphocarrier protein HPr
and regulates the utilization of carbon sources by
gram-positive bacteria. It catalyzes both the
ATP-dependent phosphorylation of Ser-46 of HPr and its
dephosphorylation by phosphorolysis. The latter
reaction uses inorganic phosphate as substrate and
produces pyrophosphate. Phosphoenolpyruvate
carboxykinase (PEPCK) and the C-terminal catalytic
domain of HprK/P are structurally similar with
conserved active site residues suggesting these two
phosphotransferases have related functions. The HprK/P
N-terminal domain is structurally similar to the
N-terminal domains of the MurE and MurF amino acid
ligases.
Length = 149
Score = 28.7 bits (65), Expect = 1.7
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 60 VISGESGAGKTET 72
+I+G SG GK+E
Sbjct: 18 LITGPSGIGKSEL 30
>gnl|CDD|216999 pfam02367, UPF0079, Uncharacterized P-loop hydrolase UPF0079.
This uncharacterized family contains a P-loop.
Length = 123
Score = 28.4 bits (64), Expect = 1.9
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 51 QNLDVNQSCVISGESGAGKTETTKFILQYLCSVTSNV 87
Q L ++SG+ GAGKT + + Q L +T NV
Sbjct: 10 QLLKAGDVVLLSGDLGAGKTTFVRGLAQGL-GITGNV 45
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport
systems, ATPase components [Amino acid transport and
metabolism].
Length = 309
Score = 29.2 bits (66), Expect = 2.2
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 52 NLDVNQS--CVISGESGAGKTETTKFI 76
NL + + V+ G SG+GKT T K I
Sbjct: 21 NLTIEEGEFLVLIGPSGSGKTTTLKMI 47
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They
export degradative enzymes by using a type I protein
secretion system and lack an N-terminal signal peptide,
but contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and
an outer membrane protein (OMP). For the HlyA
transporter complex, HlyB (ABC transporter) and HlyD
(MFP) reside in the inner membrane of E. coli. The OMP
component is TolC, which is thought to interact with
the MFP to form a continuous channel across the
periplasm from the cytoplasm to the exterior. HlyB
belongs to the family of ABC transporters, which are
ubiquitous, ATP-dependent transmembrane pumps or
channels. The spectrum of transport substrates ranges
from inorganic ions, nutrients such as amino acids,
sugars, or peptides, hydrophobic drugs, to large
polypeptides, such as HlyA.
Length = 173
Score = 28.7 bits (65), Expect = 2.5
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 39 VFALAEAAYSSLQNLDVN----QSCVISGESGAGKTETTKFIL 77
F A L+N+ + +S I G SG+GK+ + IL
Sbjct: 7 SFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLIL 49
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 29.1 bits (66), Expect = 2.8
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 50 LQNLDVN----QSCVISGESGAGKTETTKFIL 77
L++L + + I G SG+GK+ K +L
Sbjct: 489 LEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLL 520
>gnl|CDD|221803 pfam12846, AAA_10, AAA-like domain. This family of domains
contain a P-loop motif that is characteristic of the
AAA superfamily. Many of the proteins in this family
are conjugative transfer proteins.
Length = 316
Score = 28.9 bits (65), Expect = 2.9
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 56 NQSCVISGESGAGKTETTK-FILQYLC 81
N + +I G SG+GK+ K L+ L
Sbjct: 1 NPNMLIVGPSGSGKSTLLKLLALRLLA 27
>gnl|CDD|234751 PRK00411, cdc6, cell division control protein 6; Reviewed.
Length = 394
Score = 28.7 bits (65), Expect = 3.4
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 59 CVISGESGAGKTETTKFILQYLCSVTSNVST 89
+I G G GKT T K + + L + V
Sbjct: 58 VLIYGPPGTGKTTTVKKVFEELEEIAVKVVY 88
>gnl|CDD|236291 PRK08565, PRK08565, DNA-directed RNA polymerase subunit B;
Provisional.
Length = 1103
Score = 29.2 bits (66), Expect = 3.4
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 239 NEKLHKFFNHYVFAL-EQEIVSISIKPRLELTE 270
+ Y F L QE++S+ I PRL+L +
Sbjct: 1069 KGNISPVEVSYAFKLLLQELMSMGISPRLKLGD 1101
>gnl|CDD|213208 cd03241, ABC_RecN, ATP-binding cassette domain of RecN. RecN
ATPase involved in DNA repair; similar to ABC
(ATP-binding cassette) transporter nucleotide-binding
domain; ABC transporters are a large family of proteins
involved in the transport of a wide variety of
different compounds including sugars, ions, peptides,
and more complex organic molecules. The nucleotide
binding domain shows the highest similarity between all
members of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 276
Score = 28.7 bits (65), Expect = 3.5
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 59 CVISGESGAGK 69
V++GE+GAGK
Sbjct: 24 TVLTGETGAGK 34
>gnl|CDD|223571 COG0497, RecN, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 557
Score = 28.7 bits (65), Expect = 3.6
Identities = 7/12 (58%), Positives = 11/12 (91%)
Query: 59 CVISGESGAGKT 70
V++GE+GAGK+
Sbjct: 25 TVLTGETGAGKS 36
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 28.7 bits (65), Expect = 3.7
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 52 NLDVNQSCV--ISGESGAGKTETTKFILQYL 80
+ +V + I GESG+GK+ ++ L
Sbjct: 29 SFEVEPGEILGIVGESGSGKSTLALALMGLL 59
Score = 28.3 bits (64), Expect = 4.5
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 61 ISGESGAGKTETTKFILQYL 80
+ GESG+GK+ + + L
Sbjct: 322 LVGESGSGKSTLARILAGLL 341
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase
fold. The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons,
ATPase subunits of proteases, helicases, or
nucleic-acid stimulated ATPases. The AAA+ proteins
contain several distinct features in addition to the
conserved alpha-beta-alpha core domain structure and
the Walker A and B motifs of the P-loop NTPases.
Length = 151
Score = 27.9 bits (62), Expect = 3.7
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 61 ISGESGAGKTETTKFILQYL 80
+ G G GKT + I L
Sbjct: 24 LYGPPGTGKTTLARAIANEL 43
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain
of nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein
NikA, two integral membrane components (NikB and NikC),
and two ATPase (NikD and NikE). The NikABCDE
transporter is synthesized under anaerobic conditions
to meet the increased demand for nickel resulting from
hydrogenase synthesis. The molecular mechanism of
nickel uptake in many bacteria and most archaea is not
known. Many other members of this ABC family are also
involved in the uptake of dipeptides and oligopeptides.
The oligopeptide transport system (Opp) is a
five-component ABC transport composed of a
membrane-anchored substrate binding proteins (SRP),
OppA, two transmembrane proteins, OppB and OppC, and
two ATP-binding domains, OppD and OppF.
Length = 228
Score = 28.2 bits (64), Expect = 4.1
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 52 NLDVNQ-SCV-ISGESGAGKTETTKFILQYLCSVTS 85
+ + + + + GESG+GK+ + IL L TS
Sbjct: 25 SFSIKKGETLGLVGESGSGKSTLARAILG-LLKPTS 59
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide
dismutase. NikD and NikE are homologous [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 230
Score = 28.1 bits (63), Expect = 4.6
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 52 NLDV--NQSCVISGESGAGKTETTKFILQYLCSVTSNVS 88
NL + + + GESG+GK+ T IL L + S
Sbjct: 6 NLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTS 44
>gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region.
Length = 144
Score = 27.7 bits (62), Expect = 4.7
Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 57 QSCVISGESGAGKTETT-KFILQYLCS 82
+ +++ +G+GKT IL+ L S
Sbjct: 1 RDVLLAAPTGSGKTLAALLPILELLDS 27
>gnl|CDD|234321 TIGR03708, poly_P_AMP_trns, polyphosphate:AMP phosphotransferase.
Members of this protein family contain a domain
duplication. The characterized member from
Acinetobacter johnsonii is polyphosphate:AMP
phosphotransferase (PAP), which can transfer the
terminal phosphate from poly(P) to AMP, yielding ADP.
In the opposite direction, this enzyme can synthesize
poly(P). Each domain of this protein family is
homologous to polyphosphate kinase, an enzyme that can
run in the forward direction to extend a polyphosphate
chain with a new terminal phosphate from ATP, or in
reverse to make ATP (or GTP) from ADP (or GDP) [Central
intermediary metabolism, Phosphorus compounds].
Length = 493
Score = 28.5 bits (64), Expect = 5.0
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 41 ALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL 80
AL + Y L++ +I G GAGK ET + +++
Sbjct: 25 ALLDLQYELLESAGFPVIILIEGWDGAGKGETINLLNEWM 64
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 28.4 bits (63), Expect = 5.4
Identities = 8/29 (27%), Positives = 19/29 (65%)
Query: 48 SSLQNLDVNQSCVISGESGAGKTETTKFI 76
S ++ +++N ++ G++G GKT +F+
Sbjct: 1842 SVMRCINMNWPLILVGDTGVGKTSLLRFL 1870
>gnl|CDD|224410 COG1493, HprK, Serine kinase of the HPr protein, regulates
carbohydrate metabolism [Signal transduction
mechanisms].
Length = 308
Score = 28.0 bits (63), Expect = 5.9
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 61 ISGESGAGKTET 72
I+G SGAGK+E
Sbjct: 150 ITGPSGAGKSEL 161
>gnl|CDD|233659 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase HrpA. This
model represents HrpA, one of two related but
uncharacterized DEAH-box ATP-dependent helicases in
many Proteobacteria and a few high-GC Gram-positive
bacteria. HrpA is about 1300 amino acids long, while
its paralog HrpB, also uncharacterized, is about 800
amino acids long. Related characterized eukarotic
proteins are RNA helicases associated with pre-mRNA
processing [Unknown function, Enzymes of unknown
specificity].
Length = 1283
Score = 28.2 bits (63), Expect = 6.0
Identities = 9/15 (60%), Positives = 13/15 (86%)
Query: 56 NQSCVISGESGAGKT 70
NQ +I+GE+G+GKT
Sbjct: 82 NQVVIIAGETGSGKT 96
>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is
a multistep ATP-dependent reaction that requires the
UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are
ATPases, with UvrA having two ATP binding sites, which
have the characteristic signature of the family of ABC
proteins, and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 176
Score = 27.3 bits (61), Expect = 6.6
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 4/27 (14%)
Query: 48 SSLQNLDV----NQSCVISGESGAGKT 70
+LQNLDV N V++G SG+GK+
Sbjct: 9 HNLQNLDVSIPLNVLVVVTGVSGSGKS 35
>gnl|CDD|129168 TIGR00058, Hemerythrin, hemerythrin family non-heme iron protein.
This family includes oxygen carrier proteins of various
oligomeric states from the vascular fluid (hemerythrin)
and muscle (myohemerythrin) of some marine
invertebrates. Each unit binds 2 non-heme Fe using 5 H,
one E and one D. One member of this family,from the
sandworm Nereis diversicolor, is an unusual
(non-metallothionein) cadmium-binding protein.
Homologous proteins, excluded from this narrowly defined
family, are found in archaea and bacteria (see
pfam01814).
Length = 115
Score = 26.6 bits (59), Expect = 7.4
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 10/49 (20%)
Query: 164 LVEAAQYSSSINKEIMH----------YTSEEKSHVIWVFAWLVNHINT 202
++ AA YS + H + +++ WLVNHI T
Sbjct: 58 MMIAANYSDYDEHKKAHDDFLAVLRGLKAPVPQDDLLYAKDWLVNHIKT 106
>gnl|CDD|223302 COG0224, AtpG, F0F1-type ATP synthase, gamma subunit [Energy
production and conversion].
Length = 287
Score = 27.6 bits (62), Expect = 7.9
Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 5/101 (4%)
Query: 169 QYSSSINKEIMHYTSEEKSHVIWVFAWLVNH--INTCTNPGQD-STRFLGVLDIFGFENF 225
++S+I K++ + E K+ V L+ I+ G + F G+ D FE
Sbjct: 87 GFNSNIFKKVENLIKELKNKGKEVKLILIGKKGIDFFKKRGYNILESFTGLGDNPSFEEA 146
Query: 226 A--VNSFEQLCINYTNEKLHKFFNHYVFALEQEIVSISIKP 264
+ + ++L+ +N + AL QE + P
Sbjct: 147 IQIADKILDAFLEGEIDELYLVYNKFKNALSQEPTVQQLLP 187
>gnl|CDD|224384 COG1467, PRI1, Eukaryotic-type DNA primase, catalytic (small)
subunit [DNA replication, recombination, and repair].
Length = 341
Score = 27.3 bits (61), Expect = 8.2
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 130 KWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINKEIMHYTS 183
++ + +D+ + +I F G R YHV E S +EI+ Y S
Sbjct: 127 VRLLNDFLREDFGFKDIKIVFS--GRRGYHVHVSDEEVLSLGSEERREILDYVS 178
>gnl|CDD|238550 cd01130, VirB11-like_ATPase, Type IV secretory pathway component
VirB11, and related ATPases. The homohexamer, VirB11 is
one of eleven Vir proteins, which are required for
T-pilus biogenesis and virulence in the transfer of
T-DNA from the Ti (tumor-inducing) plasmid of bacterial
to plant cells. The pilus is a fibrous cell surface
organelle, which mediates adhesion between bacteria
during conjugative transfer or between bacteria and
host eukaryotic cells during infection. VirB11- related
ATPases include the archaeal flagella biosynthesis
protein and the pilus assembly proteins CpaF/TadA and
TrbB. This alignment contains the C-terminal domain,
which is the ATPase.
Length = 186
Score = 26.9 bits (60), Expect = 9.4
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 57 QSCVISGESGAGKTETTKFILQYL 80
++ +ISG +G+GKT +L ++
Sbjct: 26 KNILISGGTGSGKTTLLNALLAFI 49
>gnl|CDD|132709 TIGR03670, rpoB_arch, DNA-directed RNA polymerase subunit B. This
model represents the archaeal version of DNA-directed
RNA polymerase subunit B (rpoB) and is observed in all
archaeal genomes.
Length = 599
Score = 27.3 bits (61), Expect = 9.5
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 240 EKLHKFFNHYVFAL-EQEIVSISIKPRLELTESF 272
+ Y F L E+ S+ I PRLEL +
Sbjct: 566 GDISPVEMSYAFKLLLDELKSLGISPRLELGDKV 599
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.133 0.398
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,478,060
Number of extensions: 1215323
Number of successful extensions: 1321
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1292
Number of HSP's successfully gapped: 87
Length of query: 276
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 180
Effective length of database: 6,679,618
Effective search space: 1202331240
Effective search space used: 1202331240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.3 bits)