RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17386
(276 letters)
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 303 bits (779), Expect = 4e-98
Identities = 83/169 (49%), Positives = 121/169 (71%), Gaps = 1/169 (0%)
Query: 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
TY G +LVA+NPY++L IY + + Y G MG +PH+FA+AE AY + + NQS +
Sbjct: 101 TYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSII 160
Query: 61 ISGESGAGKTETTKFILQYLCSVT-SNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRF 119
+SGESGAGKT + K+ ++Y +V+ S VE+++L +N I+E+ GNAKT RNDNSSRF
Sbjct: 161 VSGESGAGKTVSAKYAMRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRF 220
Query: 120 GKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
GK++++ FD ++ I G ++ YLLE+SR+ FQ+ ERNYH+FYQL +A
Sbjct: 221 GKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQAEEERNYHIFYQLCASA 269
Score = 132 bits (334), Expect = 5e-35
Identities = 36/64 (56%), Positives = 45/64 (70%)
Query: 193 FAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFA 252
F W+V+H+N + F+GVLDI+GFE F +NSFEQ CINY NEKL + FN +VF
Sbjct: 412 FNWIVDHVNKALHSTVKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFK 471
Query: 253 LEQE 256
LEQE
Sbjct: 472 LEQE 475
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 300 bits (770), Expect = 1e-97
Identities = 79/171 (46%), Positives = 119/171 (69%), Gaps = 3/171 (1%)
Query: 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
TY G ++++ NP+K L+IY +S + Y+G PH++ALA AY S++ NQ +
Sbjct: 39 TYIGDVVISTNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVI 98
Query: 61 ISGESGAGKTETTKFILQYLCSVTSNVST---WVEQQILEANTILEAFGNAKTVRNDNSS 117
ISGESGAGKTE +K I+Q+L V+SN S + + +L++N +LEAFGNAKT+RNDNSS
Sbjct: 99 ISGESGAGKTEASKKIMQFLTFVSSNQSPNGERISKMLLDSNPLLEAFGNAKTLRNDNSS 158
Query: 118 RFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
RFGK+M++ F+ G I +YLLE+SR+ ++ GER++H+FYQ+++
Sbjct: 159 RFGKYMEMQFNAVGSPIGGKITNYLLEKSRVVGRTQGERSFHIFYQMLKGL 209
Score = 128 bits (323), Expect = 1e-33
Identities = 32/64 (50%), Positives = 39/64 (60%)
Query: 193 FAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFA 252
F WLV+ INT N + +G+LDI+GFE F NSFEQL IN+ NEKL + F
Sbjct: 361 FNWLVSKINTIINCTTEKGPVIGILDIYGFEVFQNNSFEQLNINFCNEKLQQLFIELTLK 420
Query: 253 LEQE 256
EQE
Sbjct: 421 SEQE 424
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 301 bits (773), Expect = 8e-96
Identities = 88/176 (50%), Positives = 117/176 (66%), Gaps = 8/176 (4%)
Query: 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
TY+G V +NPYK+L IYT++ V Y G K PHV+A+ E AY S+ +QS +
Sbjct: 91 TYSGLFCVVINPYKQLPIYTEAIVEMYRGKKRHEVPPHVYAVTEGAYRSMLQDREDQSIL 150
Query: 61 ISGESGAGKTETTKFILQYLCSVTSN--------VSTWVEQQILEANTILEAFGNAKTVR 112
+GESGAGKTE TK ++QYL V S+ V +E+Q+L+AN ILEAFGNAKTV+
Sbjct: 151 CTGESGAGKTENTKKVIQYLAHVASSPKGRKEPGVPGELERQLLQANPILEAFGNAKTVK 210
Query: 113 NDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
NDNSSRFGKF+++ FD I G I+ YLLE+SR Q+ E ++H+FYQL+ A
Sbjct: 211 NDNSSRFGKFIRINFDVAGYIVGANIETYLLEKSRAIRQAKDECSFHIFYQLLGGA 266
Score = 129 bits (326), Expect = 5e-34
Identities = 38/65 (58%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 193 FAWLVNHINTCTN-PGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVF 251
F WLV +N + + FLG+LDI GFE F +NSFEQLCINYTNEKL + FNH +F
Sbjct: 407 FRWLVLRLNRALDRSPRQGASFLGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNHTMF 466
Query: 252 ALEQE 256
LEQE
Sbjct: 467 VLEQE 471
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 293 bits (753), Expect = 2e-94
Identities = 84/169 (49%), Positives = 117/169 (69%), Gaps = 2/169 (1%)
Query: 1 TYTGTILVAVNPYKELD-IYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSC 59
TY IL+AVNPY ++ IY+ + Y G +G+ PHVFA+A+ A+ ++ L ++QS
Sbjct: 84 TYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSI 143
Query: 60 VISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRF 119
++SGESGAGKTE TKF+L+YL ++ +I+EAN +LEAFGNAKTVRN+NSSRF
Sbjct: 144 IVSGESGAGKTENTKFVLRYLTES-YGTGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRF 202
Query: 120 GKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
GKF+++ F+ K + G + YLLE+SRI Q ERNYH+FY+L A
Sbjct: 203 GKFVEIHFNEKSSVVGGFVSHYLLEKSRICVQGKEERNYHIFYRLCAGA 251
Score = 121 bits (307), Expect = 2e-31
Identities = 36/64 (56%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 193 FAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFA 252
F +VN +N C P + S+ F+GVLDI GFE F NSFEQ CINY NEKL +FFN +
Sbjct: 428 FDHVVNRVNQCF-PFETSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILK 486
Query: 253 LEQE 256
EQE
Sbjct: 487 EEQE 490
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 293 bits (751), Expect = 2e-92
Identities = 95/172 (55%), Positives = 122/172 (70%), Gaps = 4/172 (2%)
Query: 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
TY+G LVAVNP+K + IYTQ V + G + PH+FA+++ AY S+ + NQS +
Sbjct: 117 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLL 176
Query: 61 ISGESGAGKTETTKFILQYLCSVT----SNVSTWVEQQILEANTILEAFGNAKTVRNDNS 116
I+GESGAGKTE TK ++QYL SV +N S +EQQIL+AN ILEAFGNAKT RN+NS
Sbjct: 177 ITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNS 236
Query: 117 SRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
S FGKF+++ F+ I G IQ YLLE+SR+ FQS ERNYH+FYQL+ A
Sbjct: 237 SEFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLAGA 288
Score = 125 bits (315), Expect = 2e-32
Identities = 40/64 (62%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 193 FAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFA 252
F WLV IN + + F+GVLDI GFE F VNSFEQLCINYTNEKL +FFNH++F
Sbjct: 430 FLWLVKKINNVLCSERKA-YFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFK 488
Query: 253 LEQE 256
+EQE
Sbjct: 489 VEQE 492
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 287 bits (736), Expect = 4e-92
Identities = 96/172 (55%), Positives = 123/172 (71%), Gaps = 4/172 (2%)
Query: 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
TY+G LVAVNP+K + IYTQ V + G + PH+FA+++ AY S+ + NQS +
Sbjct: 117 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLL 176
Query: 61 ISGESGAGKTETTKFILQYLCSVT----SNVSTWVEQQILEANTILEAFGNAKTVRNDNS 116
I+GESGAGKTE TK ++QYL SV +N S +EQQIL+AN ILEAFGNAKT RN+NS
Sbjct: 177 ITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNS 236
Query: 117 SRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
SRFGKF+++ F+ I G IQ YLLE+SR+ FQS ERNYH+FYQL+ A
Sbjct: 237 SRFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLAGA 288
Score = 121 bits (306), Expect = 3e-31
Identities = 41/64 (64%), Positives = 48/64 (75%), Gaps = 1/64 (1%)
Query: 193 FAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFA 252
F WLV IN + + F+GVLDI+GFE F VNSFEQLCINYTNEKL +FFNH++F
Sbjct: 430 FLWLVKKINNVLCQERKA-YFIGVLDIYGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFK 488
Query: 253 LEQE 256
LEQE
Sbjct: 489 LEQE 492
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 281 bits (720), Expect = 1e-89
Identities = 81/178 (45%), Positives = 108/178 (60%), Gaps = 10/178 (5%)
Query: 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
TY+G V VNPYK L +YT V Y G K PH+F++++ AY + NQS +
Sbjct: 116 TYSGLFCVTVNPYKWLPVYTPEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSIL 175
Query: 61 ISGESGAGKTETTKFILQYLCSVT----------SNVSTWVEQQILEANTILEAFGNAKT 110
I+GESGAGKT TK ++QY + S +E QI++AN LEAFGNAKT
Sbjct: 176 ITGESGAGKTVNTKRVIQYFAVIAAIGDRSKKDQSPGKGTLEDQIIQANPALEAFGNAKT 235
Query: 111 VRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
VRNDNSSRFGKF+++ F + I+ YLLE+SR+ FQ ER+YH+FYQ++
Sbjct: 236 VRNDNSSRFGKFIRIHFGATGKLASADIETYLLEKSRVIFQLKAERDYHIFYQILSNK 293
Score = 126 bits (320), Expect = 4e-33
Identities = 39/64 (60%), Positives = 45/64 (70%)
Query: 193 FAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFA 252
F W+V IN Q F+GVLDI GFE F NSFEQLCIN+TNEKL +FFNH++F
Sbjct: 436 FNWMVTRINATLETKQPRQYFIGVLDIAGFEIFDFNSFEQLCINFTNEKLQQFFNHHMFV 495
Query: 253 LEQE 256
LEQE
Sbjct: 496 LEQE 499
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 280 bits (719), Expect = 4e-89
Identities = 85/179 (47%), Positives = 116/179 (64%), Gaps = 11/179 (6%)
Query: 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
TY+G +AVNPY+ L IYT S + +Y G + PH+F++A+ AY ++ NQSC+
Sbjct: 114 TYSGLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCL 173
Query: 61 ISGESGAGKTETTKFILQYLCSVT-----------SNVSTWVEQQILEANTILEAFGNAK 109
I+GESGAGKTE TK ++ YL V +E QI++AN +LEA+GNAK
Sbjct: 174 ITGESGAGKTENTKKVIMYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAK 233
Query: 110 TVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
T RN+NSSRFGKF+++ F P I G I+ YLLE+SR+T+Q ERNYH+FYQ+ A
Sbjct: 234 TTRNNNSSRFGKFIRIHFGPTGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQICSNA 292
Score = 127 bits (322), Expect = 2e-33
Identities = 37/64 (57%), Positives = 45/64 (70%)
Query: 193 FAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFA 252
F WLV +N + ++GVLDI GFE F NSFEQLCINYTNE+L +FFNH++F
Sbjct: 435 FNWLVRRVNKTLDTKAKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFI 494
Query: 253 LEQE 256
LEQE
Sbjct: 495 LEQE 498
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 279 bits (716), Expect = 3e-87
Identities = 83/169 (49%), Positives = 121/169 (71%), Gaps = 1/169 (0%)
Query: 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
TY G +LVA+NPY++L IY + + Y G MG +PH+FA+AE AY + + NQS +
Sbjct: 101 TYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSII 160
Query: 61 ISGESGAGKTETTKFILQYLCSVT-SNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRF 119
+SGESGAGKT + K+ ++Y +V+ S VE+++L +N I+E+ GNAKT RNDNSSRF
Sbjct: 161 VSGESGAGKTVSAKYAMRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRF 220
Query: 120 GKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAA 168
GK++++ FD ++ I G ++ YLLE+SR+ FQ+ ERNYH+FYQL +A
Sbjct: 221 GKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQAEEERNYHIFYQLCASA 269
Score = 134 bits (340), Expect = 7e-36
Identities = 36/64 (56%), Positives = 45/64 (70%)
Query: 193 FAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFA 252
F W+V+H+N + F+GVLDI+GFE F +NSFEQ CINY NEKL + FN +VF
Sbjct: 412 FNWIVDHVNKALHSTVKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFK 471
Query: 253 LEQE 256
LEQE
Sbjct: 472 LEQE 475
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 255 bits (653), Expect = 5e-78
Identities = 84/183 (45%), Positives = 115/183 (62%), Gaps = 15/183 (8%)
Query: 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
TY+G V +NPYK+L IY++ + Y G K PH++A+A+ AY S+ +QS +
Sbjct: 114 TYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSIL 173
Query: 61 ISGESGAGKTETTKFILQYLCSVTSN---------------VSTWVEQQILEANTILEAF 105
+GESGAGKTE TK ++QYL V S+ +E+Q+L+AN ILEAF
Sbjct: 174 CTGESGAGKTENTKKVIQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAF 233
Query: 106 GNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLV 165
GNAKTV+NDNSSRFGKF+++ FD I G I+ YLLE+SR Q+ ER +H+FY L+
Sbjct: 234 GNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRAIRQAKDERTFHIFYYLI 293
Query: 166 EAA 168
A
Sbjct: 294 AGA 296
Score = 128 bits (323), Expect = 1e-33
Identities = 36/65 (55%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 193 FAWLVNHINTC-TNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVF 251
F W++ +N + FLG+LDI GFE F +NSFEQLCINYTNEKL + FNH +F
Sbjct: 438 FRWILTRVNKALDKTKRQGASFLGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNHTMF 497
Query: 252 ALEQE 256
LEQE
Sbjct: 498 ILEQE 502
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.6 bits (133), Expect = 6e-09
Identities = 41/254 (16%), Positives = 79/254 (31%), Gaps = 77/254 (30%)
Query: 34 SQEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCSVTSNVSTWVEQ 93
S+ L +A L L ++ +I G G+GK TWV
Sbjct: 132 SRLQPYLKLRQA----LLELRPAKNVLIDGVLGSGK-------------------TWVAL 168
Query: 94 QILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWM-IKGCIIQDYLLEQ-----SR 147
+ + + F F W+ +K C + +LE +
Sbjct: 169 DVCLSYKVQCKMD------------FKIF--------WLNLKNCNSPETVLEMLQKLLYQ 208
Query: 148 IT--FQSPGERNYHVFYQLVEAAQYSSSINKEIMHYTSEEKSHVI----WVFAWLVNHIN 201
I + S + + ++ ++ + ++ E ++ A N N
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAEL----RRLLKSKPYENCLLVLLNVQN-AKAWNAFN 263
Query: 202 -TC----TNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEK----LHKFFNHYVFA 252
+C T TRF V D S + + T ++ L K+ +
Sbjct: 264 LSCKILLT------TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 253 LEQEIVSISIKPRL 266
L +E+++ + PR
Sbjct: 318 LPREVLTTN--PRR 329
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.003
Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 32/105 (30%)
Query: 7 LVAVNPYKELDIYTQ---SKVCEYHGAKMGSQEPHVFALAEAA-YSSLQNLDVNQSCVIS 62
++A+NP + ++Q V E G + G L E Y N++ NQ V +
Sbjct: 1809 MIAINPGRVAASFSQEALQYVVERVGKRTGW-------LVEIVNY----NVE-NQQYVAA 1856
Query: 63 GESGAGKTETTKFILQYLCSVTSNVSTWVEQQI----LEANTILE 103
G+ A L + +V + + Q+I L+ + LE
Sbjct: 1857 GDLRA---------LDTVTNVLNFIKL---QKIDIIELQKSLSLE 1889
Score = 28.9 bits (64), Expect = 2.5
Identities = 22/100 (22%), Positives = 31/100 (31%), Gaps = 41/100 (41%)
Query: 4 GTILVAVNPY-KEL-DIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCVI 61
G + Y +EL D+Y YH V L + + +L L I
Sbjct: 164 GNT----DDYFEELRDLYQ-----TYH--------VLVGDLIKFSAETLSEL-------I 199
Query: 62 SGESGAGKTETTKF-ILQ------------YLCSVTSNVS 88
A K T IL+ YL S+ +S
Sbjct: 200 RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP--IS 237
Score = 27.7 bits (61), Expect = 5.0
Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 27/94 (28%)
Query: 93 QQILEAN----TILEAFG--NAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQ- 145
I+ N TI FG K +R +N + + F+ ++ G + + + ++
Sbjct: 1662 LDIVINNPVNLTIH--FGGEKGKRIR-EN------YSAMIFET--IVDGKLKTEKIFKEI 1710
Query: 146 ----SRITFQSP-GERNYHVFYQ----LVEAAQY 170
+ TF+S G + F Q L+E A +
Sbjct: 1711 NEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAF 1744
Score = 27.7 bits (61), Expect = 5.9
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 21/77 (27%)
Query: 143 LEQSRITFQSPGERNYHVFYQLVEAAQYSSSINKEIMHYTSEE--KSHVIW--------V 192
L+QSRI F + + F L A+ + S + +++ K++V + V
Sbjct: 402 LDQSRIPFSERKLKFSNRF--LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV 459
Query: 193 FAWLVNHINTCTNPGQD 209
+ T G D
Sbjct: 460 Y---------DTFDGSD 467
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 32.8 bits (74), Expect = 0.099
Identities = 14/136 (10%), Positives = 38/136 (27%), Gaps = 13/136 (9%)
Query: 58 SCVISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSS 117
S + G +G GKT +K+I + V + + + N + V +
Sbjct: 47 SNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYV--------NCREVGGTPQA 98
Query: 118 RFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINKE 177
G + +Y+ ++ V+ +
Sbjct: 99 VLSSLAGKLTGFSVPKHGINLGEYI----DKIKNGTRNIRAIIYLDEVDTLVKRRGGD-I 153
Query: 178 IMHYTSEEKSHVIWVF 193
+++ +++ +
Sbjct: 154 VLYQLLRSDANISVIM 169
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2
function project, S2F, unknown function; HET: ADP;
1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB:
1fl9_A
Length = 158
Score = 31.1 bits (71), Expect = 0.19
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 41 ALAEAAYSSLQNLDVNQSCVI--SGESGAGKTETTKFILQYLC---SVTS 85
+ L L ++ ++ +G+ GAGKT T+ +LQ + +V S
Sbjct: 16 RFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKS 65
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control
factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP:
a.4.5.11 c.37.1.20
Length = 389
Score = 31.7 bits (71), Expect = 0.27
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 36 EPHVFALAEAAYSSLQNLDVNQSCV-ISGESGAGKTETTKFILQYL 80
E + L + L+N + + G G GKT T + + +
Sbjct: 23 EQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY 68
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 31.1 bits (70), Expect = 0.33
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 56 NQSCVISGESGAGKTETTKFIL 77
N + I + GAGK+ T K +L
Sbjct: 35 NSNWTILAKPGAGKSFTAKMLL 56
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural
genomics, structural genomics consortium, SGC,
activator, ATP-binding, DNA-binding; HET: ADP; 2.80A
{Homo sapiens}
Length = 235
Score = 30.7 bits (70), Expect = 0.35
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 50 LQNLDVNQSCVISGESGAGK-TETTKFIL 77
L+ + N +I G +G GK T+ +FIL
Sbjct: 70 LEAISQNSVVIIRGATGCGKTTQVPQFIL 98
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic
subunit]; helicase, flavivirus, DEAD-BOX, ATPase,
rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP:
c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Length = 440
Score = 30.6 bits (69), Expect = 0.56
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 56 NQSCVISGESGAGKTETTKFILQYL 80
+ V+ GAGK T +F+ Q L
Sbjct: 8 GMTTVLDFHPGAGK--TRRFLPQIL 30
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic
region; yeast protein, ATP binding protein; 2.25A
{Saccharomyces cerevisiae} SCOP: c.37.1.6
Length = 290
Score = 30.4 bits (67), Expect = 0.66
Identities = 26/199 (13%), Positives = 55/199 (27%), Gaps = 12/199 (6%)
Query: 61 ISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFG 120
SG G+GK+ T+ I +L + I + E +N G
Sbjct: 36 FSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQG 95
Query: 121 KFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINKEIMH 180
+ + D K + + + I + V + +Q+ ++
Sbjct: 96 RGLPGTHDMKLLQEVL---------NTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTG 146
Query: 181 YTSEEKSHVIWVFAWLVNH--INTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYT 238
+ + + W + I T + ++ F + +
Sbjct: 147 QKIKLPVDIFILEGWFLGFNPILQGIENNDLLTGDMVDVNAKLFFYSDLLWRNPEIKSLG 206
Query: 239 NE-KLHKFFNHYVFALEQE 256
N Y + L+QE
Sbjct: 207 IVFTTDNINNVYGWRLQQE 225
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 29.6 bits (66), Expect = 1.1
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 58 SCVISGESGAGKTETTKFILQYL 80
+ I G +G GKT KF+L L
Sbjct: 47 NIFIYGLTGTGKTAVVKFVLSKL 69
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 29.5 bits (65), Expect = 1.1
Identities = 8/46 (17%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 35 QEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL 80
Q + Y SL + N+ I+ + K + ++ L
Sbjct: 25 QVEDFTRIFLPIYDSLMS-SQNKLFYITNADDSTKFQLVNDVMDEL 69
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 29.2 bits (65), Expect = 1.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 54 DVNQSCVISGESGAGKTETTKFILQYLCS 82
+ I+G +G G T TKFI++ L S
Sbjct: 43 EKKHHVTINGPAGTGATTLTKFIIEALIS 71
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 29.4 bits (66), Expect = 1.7
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 26 EYHGAKMGSQEPHVFA-LAEAAYSSL-QNLDVNQSCVISGESGAGKTETTK 74
EY +G E ++ L +++L +L G +G GKTET K
Sbjct: 617 EY----IGIPERLIYTPLLLIGFATLTDSLHQKYGGCFFGPAGTGKTETVK 663
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase,
hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli}
SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Length = 608
Score = 28.5 bits (64), Expect = 2.7
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 8/43 (18%)
Query: 41 ALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCSV 83
A A A + VISG G GKT T +L L +
Sbjct: 157 AAAVALTRRI--------SVISGGPGTGKTTTVAKLLAALIQM 191
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 27.9 bits (63), Expect = 3.0
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 60 VISGESGAGKTETTKFILQ 78
V+S SG GKT +L+
Sbjct: 31 VLSSPSGCGKTTVANKLLE 49
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 27.9 bits (62), Expect = 3.3
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 61 ISGESGAGKTETTKFILQYLCSVT 84
ISG + +GKT K + ++L + +
Sbjct: 26 ISGVTNSGKTTLAKNLQKHLPNCS 49
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 27.8 bits (62), Expect = 3.8
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 41 ALAEAAYSSLQNLDVNQSCV-ISGESGAGKTETTKFILQYLCSVTSNV 87
AL + L + V +SG G+GK+ + + L +
Sbjct: 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPA 53
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein,
ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus
radiodurans} PDB: 3gp8_A 3gpl_A*
Length = 574
Score = 28.1 bits (63), Expect = 3.8
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 8/47 (17%)
Query: 41 ALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCSVTSNV 87
L + A L V++G G GK+ TTK + S+ V
Sbjct: 197 VLDQLAGHRL--------VVLTGGPGTGKSTTTKAVADLAESLGLEV 235
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
burnetii}
Length = 205
Score = 27.5 bits (62), Expect = 4.6
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 60 VISGESGAGKTETTKFILQ 78
+IS SGAGKT + +++
Sbjct: 11 IISAPSGAGKTSLVRALVK 29
>1s0p_A CAP, adenylyl cyclase-associated protein; alpha helix bundle,
membrane protein; 1.40A {Dictyostelium discoideum} SCOP:
a.192.1.1 PDB: 1tjf_A
Length = 176
Score = 27.3 bits (60), Expect = 4.8
Identities = 5/34 (14%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 163 QLVEAAQYSSSINKEIMHYTSEEKSHVIWVFAWL 196
++ +A++ + N+ + + + V WV ++
Sbjct: 114 EMRGSAEFYT--NRILKEFKGVNQDQVDWVSNYV 145
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase;
2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A*
2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Length = 219
Score = 26.7 bits (60), Expect = 6.8
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 60 VISGESGAGKTETTKFILQ 78
++S SGAGK+ + +L+
Sbjct: 20 IVSAPSGAGKSSLIQALLK 38
>1twf_B DNA-directed RNA polymerase II 140 kDa polypeptid; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.1 PDB: 1i3q_B
1i6h_B 1k83_B* 1nik_B 1nt9_B 1pqv_B 1r5u_B 1r9s_B*
1r9t_B* 1sfo_B* 1twa_B* 1twc_B* 1i50_B* 1twg_B* 1twh_B*
1wcm_B 1y1v_B 1y1w_B 1y1y_B 1y77_B* ...
Length = 1224
Score = 27.5 bits (61), Expect = 6.8
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 253 LEQEIVSISIKPRLELTESFCY 274
L QE+++++I PRL S +
Sbjct: 1203 LFQELMAMNITPRLYTDRSRDF 1224
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus
P2}
Length = 235
Score = 26.9 bits (60), Expect = 7.0
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
Query: 58 SCVISGESGAGKTETTKFILQYLC 81
++GE G GKT F L ++
Sbjct: 25 FIALTGEPGTGKT-I--FSLHFIA 45
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom
consortium, transferase; HET: EPE; 2.18A {Plasmodium
falciparum}
Length = 218
Score = 26.8 bits (60), Expect = 7.2
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 60 VISGESGAGKTETTKFILQ 78
VI G SG GK K +L
Sbjct: 27 VICGPSGVGKGTLIKKLLN 45
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism,
structural genomics, structural genomics of pathogenic
protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium
vivax}
Length = 204
Score = 26.7 bits (60), Expect = 7.2
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 60 VISGESGAGKTETTKFILQ 78
V+ G SG GK K +L
Sbjct: 16 VVCGPSGVGKGTLIKKVLS 34
>4ayb_B DNA-directed RNA polymerase; transferase, multi-subunit,
transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_B
2y0s_B 2waq_B 4b1o_B 4b1p_R 2pmz_B 3hkz_B
Length = 1131
Score = 27.1 bits (60), Expect = 7.7
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 249 YVFA-LEQEIVSISIKPRLELTESF 272
Y F L QE++S+ I PRL L +
Sbjct: 1098 YAFKLLIQELMSMIISPRLILEDRV 1122
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 26.6 bits (59), Expect = 8.1
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
Query: 58 SCVISGESGAGKTETTKFILQYLC 81
++SG G GKT F Q+L
Sbjct: 25 VVLLSGGPGTGKT-I--FSQQFLW 45
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding
HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens}
SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A*
1xrj_A*
Length = 252
Score = 26.7 bits (59), Expect = 8.6
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 61 ISGESGAGKTETTKFILQYL 80
+SG + +GK+ I+Q L
Sbjct: 27 VSGGTASGKSSVCAKIVQLL 46
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 26.3 bits (59), Expect = 9.2
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 60 VISGESGAGKT 70
V+SG SG GK
Sbjct: 10 VLSGPSGVGKG 20
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 26.3 bits (59), Expect = 9.2
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 60 VISGESGAGKT 70
V+SG SG GK
Sbjct: 12 VLSGPSGVGKG 22
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR;
2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB:
1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 26.4 bits (59), Expect = 9.3
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 60 VISGESGAGKT 70
V+SG S GK+
Sbjct: 24 VLSGPSAVGKS 34
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 26.9 bits (60), Expect = 9.4
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 60 VISGESGAGKTETTKFILQYL 80
+ G +G GK+ K +
Sbjct: 107 GLVGTNGIGKSTALKILAGKQ 127
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A
{Mus musculus} SCOP: c.37.1.1
Length = 198
Score = 26.3 bits (59), Expect = 9.6
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 60 VISGESGAGKT 70
V+SG SGAGK+
Sbjct: 8 VLSGPSGAGKS 18
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 26.3 bits (58), Expect = 9.7
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 61 ISGESGAGKTETTKFILQYL 80
+SG + +GK+ + I++ L
Sbjct: 30 VSGGTASGKSTVCEKIMELL 49
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P;
2.25A {Thermus thermophilus} PDB: 3asy_A*
Length = 211
Score = 26.4 bits (59), Expect = 9.9
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 61 ISGESGAGKTETTKFILQYL 80
I+G + +GKT + + + L
Sbjct: 11 IAGGTASGKTTLAQALARTL 30
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization,
acetylation, ATP-binding, nucleotide-binding,
phosphoprotein, transferase; 1.80A {Saccharomyces
cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A
2zzy_A
Length = 186
Score = 26.3 bits (59), Expect = 9.9
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 60 VISGESGAGKTETTKFILQ 78
VISG SG GK+ K +
Sbjct: 5 VISGPSGTGKSTLLKKLFA 23
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.133 0.398
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,043,580
Number of extensions: 223874
Number of successful extensions: 551
Number of sequences better than 10.0: 1
Number of HSP's gapped: 534
Number of HSP's successfully gapped: 64
Length of query: 276
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 184
Effective length of database: 4,133,061
Effective search space: 760483224
Effective search space used: 760483224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.7 bits)