RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17386
(276 letters)
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 215 bits (548), Expect = 1e-65
Identities = 84/183 (45%), Positives = 114/183 (62%), Gaps = 15/183 (8%)
Query: 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
TY+G V +NPYK+L IY++ + Y G K PH++A+A+ AY S+ +QS +
Sbjct: 36 TYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSIL 95
Query: 61 ISGESGAGKTETTKFILQYLCSVTS---------------NVSTWVEQQILEANTILEAF 105
+GESGAGKTE TK ++QYL V S +E+Q+L+AN ILEAF
Sbjct: 96 CTGESGAGKTENTKKVIQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAF 155
Query: 106 GNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLV 165
GNAKTV+NDNSSRFGKF+++ FD I G I+ YLLE+SR Q+ ER +H+FY L+
Sbjct: 156 GNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRAIRQAKDERTFHIFYYLI 215
Query: 166 EAA 168
A
Sbjct: 216 AGA 218
Score = 69.4 bits (169), Expect = 6e-14
Identities = 36/69 (52%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 191 WVFAWLVNHINTC-TNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHY 249
+F W++ +N + FLG+LDI GFE F +NSFEQLCINYTNEKL + FNH
Sbjct: 358 RLFRWILTRVNKALDKTKRQGASFLGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNHT 417
Query: 250 VFALEQEIV 258
+F LEQE
Sbjct: 418 MFILEQEEY 426
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 216 bits (551), Expect = 1e-65
Identities = 86/180 (47%), Positives = 117/180 (65%), Gaps = 11/180 (6%)
Query: 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
TY+G +AVNPY+ L IYT S + +Y G + PH+F++A+ AY ++ NQSC+
Sbjct: 66 TYSGLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCL 125
Query: 61 ISGESGAGKTETTKFILQYLCSVTSNVS-----------TWVEQQILEANTILEAFGNAK 109
I+GESGAGKTE TK ++ YL V V +E QI++AN +LEA+GNAK
Sbjct: 126 ITGESGAGKTENTKKVIMYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAK 185
Query: 110 TVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQ 169
T RN+NSSRFGKF+++ F P I G I+ YLLE+SR+T+Q ERNYH+FYQ+ A
Sbjct: 186 TTRNNNSSRFGKFIRIHFGPTGKIAGADIETYLLEKSRVTYQQSAERNYHIFYQICSNAI 245
Score = 77.4 bits (190), Expect = 1e-16
Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 169 QYSSSINKEIMHYTSEEKSHVI--WVFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFA 226
+ N + + + + +F WLV +N + ++GVLDI GFE F
Sbjct: 361 MVTKGQNMNQVVNSVGALAKSLYDRMFNWLVRRVNKTLDTKAKRNYYIGVLDIAGFEIFD 420
Query: 227 VNSFEQLCINYTNEKLHKFFNHYVFALEQEIV 258
NSFEQLCINYTNE+L +FFNH++F LEQE
Sbjct: 421 FNSFEQLCINYTNERLQQFFNHHMFILEQEEY 452
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 213 bits (544), Expect = 4e-65
Identities = 99/192 (51%), Positives = 131/192 (68%), Gaps = 7/192 (3%)
Query: 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
TY+G LVAVNP+K + IYTQ V + G + PH+FA+++ AY S+ + NQS +
Sbjct: 70 TYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLL 129
Query: 61 ISGESGAGKTETTKFILQYLCSVT----SNVSTWVEQQILEANTILEAFGNAKTVRNDNS 116
I+GESGAGKTE TK ++QYL SV +N S +EQQIL+AN ILEAFGNAKT RN+NS
Sbjct: 130 ITGESGAGKTENTKKVIQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNS 189
Query: 117 SRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINK 176
SRFGKF+++ F+ I G IQ YLLE+SR+ FQS ERNYH+FYQL+ A ++ K
Sbjct: 190 SRFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLAGA---TAEEK 246
Query: 177 EIMHYTSEEKSH 188
+ +H E +
Sbjct: 247 KALHLAGPESFN 258
Score = 69.0 bits (168), Expect = 7e-14
Identities = 41/65 (63%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Query: 193 FAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFA 252
F WLV IN + F+GVLDI GFE F VNSFEQLCINYTNEKL +FFNH++F
Sbjct: 383 FLWLVKKINNVLCQ-ERKAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFK 441
Query: 253 LEQEI 257
LEQE
Sbjct: 442 LEQEE 446
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 214 bits (546), Expect = 7e-65
Identities = 81/180 (45%), Positives = 112/180 (62%), Gaps = 11/180 (6%)
Query: 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
TY+G V VNPYK L +Y V Y G K PH+F++++ AY + NQS +
Sbjct: 68 TYSGLFCVTVNPYKWLPVYNPKVVLAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSIL 127
Query: 61 ISGESGAGKTETTKFILQYLCSVTS-----------NVSTWVEQQILEANTILEAFGNAK 109
I+GESGAGKT TK ++QY ++ + + +E QI+ AN +LEAFGNAK
Sbjct: 128 ITGESGAGKTVNTKRVIQYFATIAASGEKKKEEQSGKMQGTLEDQIISANPLLEAFGNAK 187
Query: 110 TVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQ 169
TVRNDNSSRFGKF+++ F + I+ YLLE+SR+TFQ P ER+YH+FYQ++ +
Sbjct: 188 TVRNDNSSRFGKFIRIHFGATGKLASADIETYLLEKSRVTFQLPAERSYHIFYQIMSNKK 247
Score = 78.6 bits (193), Expect = 5e-17
Identities = 40/72 (55%), Positives = 49/72 (68%)
Query: 186 KSHVIWVFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKF 245
K+ +F W+V IN + Q F+GVLDI GFE F NSFEQLCIN+TNEKL +F
Sbjct: 382 KAVYEKMFLWMVIRINQQLDTKQPRQYFIGVLDIAGFEIFDFNSFEQLCINFTNEKLQQF 441
Query: 246 FNHYVFALEQEI 257
FNH++F LEQE
Sbjct: 442 FNHHMFVLEQEE 453
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 213 bits (542), Expect = 1e-64
Identities = 83/170 (48%), Positives = 121/170 (71%), Gaps = 1/170 (0%)
Query: 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
TY G +LVA+NPY++L IY + + Y G MG +PH+FA+AE AY + + NQS +
Sbjct: 39 TYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSII 98
Query: 61 ISGESGAGKTETTKFILQYLCSVT-SNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRF 119
+SGESGAGKT + K+ ++Y +V+ S VE+++L +N I+E+ GNAKT RNDNSSRF
Sbjct: 99 VSGESGAGKTVSAKYAMRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRF 158
Query: 120 GKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQ 169
GK++++ FD ++ I G ++ YLLE+SR+ FQ+ ERNYH+FYQL +A
Sbjct: 159 GKYIEIGFDKRYRIIGANMRTYLLEKSRVVFQAEEERNYHIFYQLCASAA 208
Score = 77.9 bits (191), Expect = 9e-17
Identities = 36/67 (53%), Positives = 46/67 (68%)
Query: 191 WVFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYV 250
+F W+V+H+N + F+GVLDI+GFE F +NSFEQ CINY NEKL + FN +V
Sbjct: 348 NLFNWIVDHVNKALHSTVKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHV 407
Query: 251 FALEQEI 257
F LEQE
Sbjct: 408 FKLEQEE 414
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 210 bits (535), Expect = 5e-64
Identities = 79/172 (45%), Positives = 119/172 (69%), Gaps = 3/172 (1%)
Query: 1 TYTGTILVAVNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAAYSSLQNLDVNQSCV 60
TY G ++++ NP+K L+IY +S + Y+G PH++ALA AY S++ NQ +
Sbjct: 31 TYIGDVVISTNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVI 90
Query: 61 ISGESGAGKTETTKFILQYLCSVTSNVST---WVEQQILEANTILEAFGNAKTVRNDNSS 117
ISGESGAGKTE +K I+Q+L V+SN S + + +L++N +LEAFGNAKT+RNDNSS
Sbjct: 91 ISGESGAGKTEASKKIMQFLTFVSSNQSPNGERISKMLLDSNPLLEAFGNAKTLRNDNSS 150
Query: 118 RFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQ 169
RFGK+M++ F+ G I +YLLE+SR+ ++ GER++H+FYQ+++
Sbjct: 151 RFGKYMEMQFNAVGSPIGGKITNYLLEKSRVVGRTQGERSFHIFYQMLKGLS 202
Score = 77.0 bits (189), Expect = 1e-16
Identities = 36/123 (29%), Positives = 52/123 (42%), Gaps = 7/123 (5%)
Query: 135 GCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINKEIMHYTSEEKSHVIWVFA 194
Q + + + + V ++ Q + S + +F
Sbjct: 302 KTDQQSLSIALCYRSISTGVGKRCSVISVPMDCNQAAYSRDALAKALYER-------LFN 354
Query: 195 WLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYTNEKLHKFFNHYVFALE 254
WLV+ INT N + +G+LDI+GFE F NSFEQL IN+ NEKL + F E
Sbjct: 355 WLVSKINTIINCTTEKGPVIGILDIYGFEVFQNNSFEQLNINFCNEKLQQLFIELTLKSE 414
Query: 255 QEI 257
QE
Sbjct: 415 QEE 417
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 32.6 bits (74), Expect = 0.034
Identities = 17/88 (19%), Positives = 25/88 (28%), Gaps = 7/88 (7%)
Query: 38 HVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILE 97
+ + + +I+GESG GK + I + I
Sbjct: 11 EILEKIKKISCA------ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPR 64
Query: 98 ANTILEAFGNAKTVRND-NSSRFGKFMQ 124
E FG K SS+ G F
Sbjct: 65 DIFEAELFGYEKGAFTGAVSSKEGFFEL 92
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 32.2 bits (72), Expect = 0.050
Identities = 19/142 (13%), Positives = 42/142 (29%), Gaps = 9/142 (6%)
Query: 60 VISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRF 119
+ +G +G GKT + +++ + +N + E+ L + + + R
Sbjct: 30 LATGATGTGKTL---LVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQ 86
Query: 120 GKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINKEIM 179
VC P+ +Q E + + + V + ++
Sbjct: 87 NLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNA----FRQFVI 142
Query: 180 HYTSEEKSHVIWVFAWLVNHIN 201
T K I N +
Sbjct: 143 GVTGYAKQEEITGL--FTNTSD 162
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 30.7 bits (68), Expect = 0.18
Identities = 5/25 (20%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 56 NQSCVISGESGAGKTETTKFILQYL 80
+ ++ GAGK T +++ +
Sbjct: 9 KRLTIMDLHPGAGK--TKRYLPAIV 31
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 29.5 bits (65), Expect = 0.30
Identities = 8/103 (7%), Positives = 25/103 (24%), Gaps = 3/103 (2%)
Query: 60 VISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRF 119
++SG G+GK+ + + + + ++ I +
Sbjct: 8 LLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIA 67
Query: 120 GKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFY 162
I+ + F + +++
Sbjct: 68 ADVAGRYAKEG---YFVILDGVVRPDWLPAFTALARPLHYIVL 107
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 29.5 bits (65), Expect = 0.34
Identities = 17/189 (8%), Positives = 41/189 (21%), Gaps = 18/189 (9%)
Query: 59 CVISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSR 118
++ G+ G+GKT I + + +T + N +
Sbjct: 35 FLLGGQPGSGKTSLRSAIFEETQGNVIVID---------NDTFKQQHPNFDELV------ 79
Query: 119 FGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINKEI 178
+ + + + + S + E ++ A + E
Sbjct: 80 -KLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYET 138
Query: 179 MHYTSEEKSHVIWVFAWLVNHINTCTNPGQDSTRFLGVLDIFGFENFAVNSFEQLCINYT 238
Y ++ T + R + E L
Sbjct: 139 KMYVMAVPKINSYLGTI--ERYETMYADDPMTARATPKQAHDIVVKNLPTNLETLHKTGL 196
Query: 239 NEKLHKFFN 247
+ +
Sbjct: 197 FSDIRLYNR 205
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 28.7 bits (63), Expect = 0.38
Identities = 10/125 (8%), Positives = 28/125 (22%), Gaps = 11/125 (8%)
Query: 56 NQSCVISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILE---ANTILEAFGNAKTVR 112
Q + +G+GK+ + + V + +A G +R
Sbjct: 8 FQVAHLHAPTGSGKSTK---VPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGVDPNIR 64
Query: 113 NDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYH---VFYQLVEAAQ 169
+ + I + +++ A+
Sbjct: 65 TGVRTITTGSPITYSTYGKFL--ADGGCSGGAYDIIICDECHSTDATSILGIGTVLDQAE 122
Query: 170 YSSSI 174
+ +
Sbjct: 123 TAGAR 127
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 29.4 bits (64), Expect = 0.40
Identities = 16/154 (10%), Positives = 38/154 (24%), Gaps = 7/154 (4%)
Query: 35 QEPHVFALAEAAYSSLQNL-DVNQSCVISGESGAGKTETTKFILQYL-CSVTSNVSTWVE 92
+E + L + L+N + G G GKT T + + + T+
Sbjct: 21 REQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYING 80
Query: 93 QQILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQS 152
I+ + + + + L + +
Sbjct: 81 FIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL---- 136
Query: 153 PGERNYHVFYQLVEAAQYSSSINKEIMHYTSEEK 186
F +L + A + ++ +
Sbjct: 137 -APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 169
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 29.3 bits (64), Expect = 0.46
Identities = 27/211 (12%), Positives = 54/211 (25%), Gaps = 10/211 (4%)
Query: 41 ALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANT 100
S DVN G G GKT KF ++ + E E T
Sbjct: 31 IYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRV----------SEAAAKEGLT 80
Query: 101 ILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHV 160
+ +A+ NA N + Q + + + L +
Sbjct: 81 VKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDE 140
Query: 161 FYQLVEAAQYSSSINKEIMHYTSEEKSHVIWVFAWLVNHINTCTNPGQDSTRFLGVLDIF 220
F ++ + + ++ ++ E S + + + V
Sbjct: 141 FQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQI 200
Query: 221 GFENFAVNSFEQLCINYTNEKLHKFFNHYVF 251
GF+ + ++ V+
Sbjct: 201 GFKLHLPAYKSRELYTILEQRAELGLRDTVW 231
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 29.0 bits (63), Expect = 0.49
Identities = 11/71 (15%), Positives = 21/71 (29%)
Query: 61 ISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSRFG 120
I G S +GKT + Q L +V + + GN +
Sbjct: 27 IDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDV 86
Query: 121 KFMQVCFDPKW 131
+++ +
Sbjct: 87 EWLTHQLFRQL 97
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 27.6 bits (61), Expect = 1.2
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 53 LDVNQSCV-ISGESGAGKTETT 73
+DV V I+G+SG GK+ET
Sbjct: 11 VDVYGVGVLITGDSGIGKSETA 32
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 208
Score = 27.9 bits (61), Expect = 1.3
Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 3/85 (3%)
Query: 56 NQSCVI--SGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRN 113
+ I +G S +GK+ + L V + + + G ++ RN
Sbjct: 22 QRGLTIWLTGLSASGKSTLAVELEHQLVR-DRRVHAYRLDGDNIRFGLNKDLGFSEADRN 80
Query: 114 DNSSRFGKFMQVCFDPKWMIKGCII 138
+N R + ++ D + I
Sbjct: 81 ENIRRIAEVAKLFADSNSIAITSFI 105
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 27.8 bits (60), Expect = 1.4
Identities = 13/143 (9%), Positives = 33/143 (23%), Gaps = 5/143 (3%)
Query: 56 NQSCVISGESGAGKTETTKFILQYLCSVTSNVS--TWVEQQILEANTILEAFGNAKTVRN 113
++ G GK+ K + L + + E+ + L
Sbjct: 29 APITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKLV 88
Query: 114 DNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITF---QSPGERNYHVFYQLVEAAQY 170
K ++ M ++ +V L EA +
Sbjct: 89 KRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQEL 148
Query: 171 SSSINKEIMHYTSEEKSHVIWVF 193
++ + ++ +
Sbjct: 149 VKLRGVNLLPALAYAYDNLKRIK 171
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 27.2 bits (60), Expect = 1.7
Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 53 LDVNQSCV-ISGESGAGKTETT 73
L+V V ++G SG GK+E
Sbjct: 11 LEVFGVGVLLTGRSGIGKSECA 32
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus
[TaxId: 10335]}
Length = 331
Score = 27.7 bits (61), Expect = 1.8
Identities = 22/153 (14%), Positives = 41/153 (26%), Gaps = 15/153 (9%)
Query: 60 VISGESGAGKTETTKFILQYLCSVTSNVSTWVE----QQILEANTILEAF------GNAK 109
+ G G GKT + L + + + E + L +
Sbjct: 9 YLDGAYGIGKTTAAEEFLHHFAITPNRILLIGEPLSYWRNLAGEDAICGIYGTQTRRLNG 68
Query: 110 TVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQ 169
V +++ R Q F I I + + Q E + L +
Sbjct: 69 DVSPEDAQRLTAHFQSLFCSPHAIMHAKISALMDTSTSDLVQVNKEPYKIM---LSDRHP 125
Query: 170 YSSSINKEIMHYTSEEKSHVIW--VFAWLVNHI 200
+S+I + Y + S + L
Sbjct: 126 IASTICFPLSRYLVGDMSPAALPGLLFTLPAEP 158
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 27.3 bits (59), Expect = 1.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 60 VISGESGAGKTETTKFILQYL 80
+I+GE G GKT K I++ L
Sbjct: 4 IITGEPGVGKTTLVKKIVERL 24
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 27.3 bits (60), Expect = 1.9
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 52 NLDVNQSCVIS--GESGAGKTETTKFIL 77
+ ++ + + G +GAGKT T + I
Sbjct: 22 SFEIEEGEIFGLIGPNGAGKTTTLRIIS 49
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895
{Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 27.2 bits (60), Expect = 2.0
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 52 NLDVN--QSCVISGESGAGKTETTKFILQYL 80
+ + G +G GKT K I YL
Sbjct: 21 TMTIEKGNVVNFHGPNGIGKTTLLKTISTYL 51
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 27.1 bits (60), Expect = 2.1
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 52 NLDVN--QSCVISGESGAGKTETTKFI 76
+L I G SG+GK+ + I
Sbjct: 22 SLQARAGDVISIIGSSGSGKSTFLRCI 48
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 26.8 bits (58), Expect = 2.3
Identities = 19/127 (14%), Positives = 38/127 (29%), Gaps = 9/127 (7%)
Query: 61 ISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILE--AFGNAKTVRNDNSSR 118
+SG + +GK+ I+Q L + IL +F T +
Sbjct: 7 VSGGTASGKSSVCAKIVQLL-------GQNEVDYRQKQVVILSQDSFYRVLTSEQKAKAL 59
Query: 119 FGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSINKEI 178
G+F D + E + ++ + V + + I
Sbjct: 60 KGQFNFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGI 119
Query: 179 MHYTSEE 185
+ + S+E
Sbjct: 120 LAFYSQE 126
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 27.1 bits (59), Expect = 2.4
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 61 ISGESGAGKTETTKFILQYL 80
SG G+GK+ T+ I +L
Sbjct: 32 FSGPQGSGKSFTSIQIYNHL 51
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 26.8 bits (59), Expect = 2.4
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 52 NLDVNQS--CVISGESGAGKTETTKFI 76
+L V + + G +GAGKT T I
Sbjct: 26 DLKVPRGQIVTLIGANGAGKTTTLSAI 52
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 26.9 bits (58), Expect = 2.6
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 56 NQSCVISGESGAGKTETTKFILQYL 80
N+ V++G G G T +++ + L
Sbjct: 1 NKVVVVTGVPGVGSTTSSQLAMDNL 25
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 26.9 bits (59), Expect = 2.8
Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 52 NLDVNQS--CVISGESGAGKTETTKFI 76
++ VN+ +I G +G+GK+ I
Sbjct: 24 SISVNKGDVTLIIGPNGSGKSTLINVI 50
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 26.9 bits (58), Expect = 2.8
Identities = 24/147 (16%), Positives = 40/147 (27%), Gaps = 7/147 (4%)
Query: 60 VISGESGAGKTETTKFILQYLC-SVTSNVSTWVEQQILEANTILEAFGNAKTVRNDNSSR 118
++SG SG GKT F +Q+L + V E + +
Sbjct: 30 LVSGTSGTGKTL---FSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVD 86
Query: 119 FGKFMQVCFDP---KWMIKGCIIQDYLLEQSRITFQSPGERNYHVFYQLVEAAQYSSSIN 175
GK + P + G L+E+ Q R + QY +S
Sbjct: 87 EGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSV 146
Query: 176 KEIMHYTSEEKSHVIWVFAWLVNHINT 202
+ + I +
Sbjct: 147 VRRELFRLVARLKQIGATTVMTTERIE 173
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 26.8 bits (59), Expect = 2.8
Identities = 6/28 (21%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 52 NLDVNQSCVIS--GESGAGKTETTKFIL 77
+ +V ++ G +GAGK+ +
Sbjct: 19 SGEVRAGEILHLVGPNGAGKSTLLARMA 46
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 26.8 bits (59), Expect = 2.9
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 52 NLDVN--QSCVISGESGAGKTETTKFIL 77
+L+V + ++ G SG GKT T + I
Sbjct: 23 SLEVKDGEFMILLGPSGCGKTTTLRMIA 50
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 26.2 bits (56), Expect = 2.9
Identities = 10/89 (11%), Positives = 23/89 (25%), Gaps = 3/89 (3%)
Query: 56 NQSCVISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQILEANTILEAFGNAKTVRNDN 115
+ V+ GAGKT L + + + + E +
Sbjct: 7 GMTTVLDFHPGAGKTRR---FLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVKF 63
Query: 116 SSRFGKFMQVCFDPKWMIKGCIIQDYLLE 144
++ + + + +LE
Sbjct: 64 HTQAFSAHGSGREVIDAMCHATLTYRMLE 92
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 26.5 bits (57), Expect = 3.3
Identities = 19/124 (15%), Positives = 41/124 (33%), Gaps = 10/124 (8%)
Query: 35 QEPHVFALAEAAYSSLQNLDVNQSCVISGESGAGKTETTKFILQYL-CSVTSNVSTWVEQ 93
QE L ++ + + ++ G G GKT I L ++ +E+
Sbjct: 14 QERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK 73
Query: 94 QILEANTILEAFGNAKTVRNDNSSRFGKFMQVCFDPKWMIKGCIIQDYLLEQSRITFQSP 153
A + + + D R + + P ++D++++ + Q P
Sbjct: 74 PGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYP-------AMEDFVMDI--VIGQGP 124
Query: 154 GERN 157
R
Sbjct: 125 AART 128
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 26.5 bits (57), Expect = 3.3
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 57 QSCVISGESGAGKTETTKFILQYL 80
+ ++G G GKT + L
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVL 25
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 26.0 bits (57), Expect = 3.5
Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 53 LDVNQSCV-ISGESGAGKTETT 73
+D+ V I+G+SG GK+ET
Sbjct: 10 VDIYGLGVLITGDSGVGKSETA 31
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 26.1 bits (56), Expect = 3.6
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 60 VISGESGAGKTETTKFILQYL 80
+I+G +G GK+ T K + L
Sbjct: 6 IITGPAGVGKSTTCKRLAAQL 26
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 26.2 bits (57), Expect = 3.7
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 52 NLDVN--QSCVISGESGAGKTETTKFILQYLCSVTSNVSTWVEQQI 95
N+++ + I G SGAGKT T I+ L ++ + ++ +
Sbjct: 25 NINIENGERFGILGPSGAGKT-TFMRIIAGLDVPSTGELYFDDRLV 69
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 26.4 bits (58), Expect = 3.8
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 52 NLDVNQ--SCVISGESGAGKTETTKFI 76
NLD+++ V G SG GK+ + I
Sbjct: 20 NLDIHEGEFVVFVGPSGCGKSTLLRMI 46
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 26.1 bits (56), Expect = 3.9
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 60 VISGESGAGKTETTKFILQYLCSVTSNVST 89
V+SG S GK+ + + + + ++ +VS
Sbjct: 6 VLSGPSAVGKSTVVRCLRERIPNLHFSVSA 35
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 26.1 bits (56), Expect = 3.9
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 60 VISGESGAGKTETTKFILQYL 80
+++G G GK+ + + L
Sbjct: 5 IVTGIPGVGKSTVLAKVKEIL 25
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein
TrwB {Escherichia coli [TaxId: 562]}
Length = 433
Score = 26.4 bits (57), Expect = 4.2
Identities = 4/25 (16%), Positives = 12/25 (48%)
Query: 56 NQSCVISGESGAGKTETTKFILQYL 80
+ +++G +G GK+ + +
Sbjct: 50 PRHLLVNGATGTGKSVLLRELAYTG 74
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 26.2 bits (57), Expect = 4.4
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 52 NLDVN--QSCVISGESGAGKTETTKFI 76
+L V + VI G +GAGKT + I
Sbjct: 20 SLKVESGEYFVILGPTGAGKTLFLELI 46
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 26.1 bits (56), Expect = 4.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 60 VISGESGAGKTETTKFILQ 78
V+SG SGAGK+ K + Q
Sbjct: 4 VLSGPSGAGKSTLLKKLFQ 22
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022,
N-terminal domain {Pyrococcus horikoshii [TaxId:
53953]}
Length = 239
Score = 25.9 bits (57), Expect = 4.6
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 52 NLDV--NQSCVISGESGAGKTETTKFIL 77
NL + + V+ G SG GKT T + I
Sbjct: 26 NLTIKDGEFLVLLGPSGCGKTTTLRMIA 53
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 288
Score = 26.1 bits (57), Expect = 4.7
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 61 ISGESGAGKTETTKFILQYL 80
++G SGAG + Q
Sbjct: 9 VTGSSGAGTSTVKHTFDQIF 28
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 26.0 bits (57), Expect = 4.7
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 52 NLDVN--QSCVISGESGAGKTETTKFIL 77
NL++ + I+G +G+GKT IL
Sbjct: 56 NLNIEKGEMLAITGSTGSGKTSLLMLIL 83
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import
ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 240
Score = 26.1 bits (57), Expect = 4.8
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 5/30 (16%)
Query: 52 NLDVN-----QSCVISGESGAGKTETTKFI 76
L+V+ CV+ G +GAGK+ + I
Sbjct: 15 RLNVDFEMGRDYCVLLGPTGAGKSVFLELI 44
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 25.7 bits (55), Expect = 5.2
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 60 VISGESGAGKTETTKFILQ 78
VISG SG GK+ K +
Sbjct: 5 VISGPSGTGKSTLLKKLFA 23
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 26.0 bits (56), Expect = 5.3
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 60 VISGESGAGKTETTKFILQ 78
++S SGAGK+ + +L+
Sbjct: 6 IVSAPSGAGKSSLIQALLK 24
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus
influenzae [TaxId: 727]}
Length = 158
Score = 25.4 bits (55), Expect = 5.4
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 41 ALAEAAYSSLQNLDVNQSCVI--SGESGAGKTETTKFILQYLCSVTSNVS 88
+ L L ++ ++ +G+ GAGKT T+ +LQ + + S
Sbjct: 16 RFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKS 65
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 26.0 bits (57), Expect = 5.4
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 52 NLDVN--QSCVISGESGAGKTETTKFILQYLCSVTS 85
+L V Q + G SGAGK+ T + L T
Sbjct: 25 SLHVPAGQIYGVIGASGAGKS-TLIRCVNLLERPTE 59
>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2
(P-protein) {Thermus thermophilus [TaxId: 274]}
Length = 471
Score = 25.9 bits (56), Expect = 5.7
Identities = 6/37 (16%), Positives = 8/37 (21%)
Query: 10 VNPYKELDIYTQSKVCEYHGAKMGSQEPHVFALAEAA 46
L + G + EP A E
Sbjct: 101 AQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELT 137
>d1s0pa_ a.192.1.1 (A:) N-terminal domain of adenylylcyclase
associated protein, CAP {Dictyostelium discoideum
[TaxId: 44689]}
Length = 176
Score = 25.5 bits (56), Expect = 6.7
Identities = 5/34 (14%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 163 QLVEAAQYSSSINKEIMHYTSEEKSHVIWVFAWL 196
++ +A++ N+ + + + V WV ++
Sbjct: 114 EMRGSAEFY--TNRILKEFKGVNQDQVDWVSNYV 145
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 25.6 bits (56), Expect = 6.8
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 52 NLDVN--QSCVISGESGAGKTETTKFIL 77
NL + + I G SG+GK+ TK I
Sbjct: 23 NLSIKQGEVIGIVGRSGSGKSTLTKLIQ 50
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 24.8 bits (53), Expect = 9.0
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 60 VISGESGAGKTETTKFILQ 78
V+ G G G+ ++
Sbjct: 7 VLLGAHGVGRRHIKNTLIT 25
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.133 0.398
Gapped
Lambda K H
0.267 0.0387 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,000,149
Number of extensions: 44170
Number of successful extensions: 263
Number of sequences better than 10.0: 1
Number of HSP's gapped: 255
Number of HSP's successfully gapped: 82
Length of query: 276
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 192
Effective length of database: 1,254,276
Effective search space: 240820992
Effective search space used: 240820992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.7 bits)