BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17388
(272 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X6V|B Chain B, The Crystal Structure Of Human 3'-Phosphoadenosine-5'-
Phosphosulfate Synthetase 1
pdb|1X6V|A Chain A, The Crystal Structure Of Human 3'-Phosphoadenosine-5'-
Phosphosulfate Synthetase 1
pdb|1XJQ|B Chain B, Adp Complex Of Human Paps Synthetase 1
pdb|1XJQ|A Chain A, Adp Complex Of Human Paps Synthetase 1
pdb|1XNJ|B Chain B, Aps Complex Of Human Paps Synthetase 1
pdb|1XNJ|A Chain A, Aps Complex Of Human Paps Synthetase 1
Length = 630
Score = 274 bits (701), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 132/263 (50%), Positives = 176/263 (66%), Gaps = 19/263 (7%)
Query: 29 GLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAK 88
GLSGAGKT++S +E YL+ GIP Y LDGDN+R G+N NL FS EDR ENVRR AE AK
Sbjct: 59 GLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAK 118
Query: 89 MFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAR 148
+FA+ G + + SF+SP R+ AR+IH A+L FFEVFV+ P+ +CEQRDVKG YKKAR
Sbjct: 119 LFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKAR 178
Query: 149 EGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIPARQFFFI---- 204
G+IK FTG+ YE P+ P+L+L+T + V C V++++ + ++P + +
Sbjct: 179 AGEIKGFTGIDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQERDIVPVDASYEVKELY 238
Query: 205 -------------EALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNT-LD 250
E LP L I +D+QWVQV+AEGW++PL GFMRE E+L+ +HF+ LD
Sbjct: 239 VPENKLHLAKTDAETLPALKINKVDMQWVQVLAEGWATPLNGFMREREYLQCLHFDCLLD 298
Query: 251 SNV-NQSVAIVLAVTGEDKQRLE 272
V N SV IVL T EDK+RL+
Sbjct: 299 GGVINLSVPIVLTATHEDKERLD 321
>pdb|2OFX|A Chain A, Crystal Structure Of The Apsk Domain Of Human Papss1 In
Complex With Adpmg And Paps
pdb|2OFX|B Chain B, Crystal Structure Of The Apsk Domain Of Human Papss1 In
Complex With Adpmg And Paps
Length = 207
Score = 205 bits (522), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 91/171 (53%), Positives = 122/171 (71%)
Query: 27 FPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAEC 86
GLSGAGKT++S +E YL+ GIP Y LDGDN+R G+N NL FS EDR ENVRR AE
Sbjct: 37 LTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEV 96
Query: 87 AKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKK 146
AK+FA+ G + + SF+SP R+ AR+IH A+L FFEVFV+ P+ +CEQRDVKG YKK
Sbjct: 97 AKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKK 156
Query: 147 AREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIP 197
AR G+IK FTG+ YE P+ P+L+L+T + V C V++++ + ++P
Sbjct: 157 ARAGEIKGFTGIDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQERDIVP 207
>pdb|2OFW|A Chain A, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|B Chain B, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|C Chain C, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|D Chain D, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|E Chain E, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|F Chain F, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|G Chain G, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
pdb|2OFW|H Chain H, Crystal Structure Of The Apsk Domain Of Human Papss1
Complexed With 2 Aps Molecules
Length = 208
Score = 204 bits (520), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 91/173 (52%), Positives = 123/173 (71%)
Query: 25 LLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAA 84
+ GLSGAGKT++S +E YL+ GIP Y LDGDN+R G+N NL FS EDR ENVRR A
Sbjct: 36 IWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIA 95
Query: 85 ECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHY 144
E AK+FA+ G + + SF+SP R+ AR+IH A+L FFEVFV+ P+ +CEQRDVKG Y
Sbjct: 96 EVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLY 155
Query: 145 KKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIP 197
KKAR G+IK FTG+ YE P+ P+L+L+T + V C V++++ + ++P
Sbjct: 156 KKARAGEIKGFTGIDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLNERDILP 208
>pdb|2PEY|A Chain A, Crystal Strucutre Of Deletion Mutant Of Aps-Kinase Domain
Of Human Paps-Synthetase 1
pdb|2PEY|B Chain B, Crystal Strucutre Of Deletion Mutant Of Aps-Kinase Domain
Of Human Paps-Synthetase 1
pdb|2PEZ|A Chain A, Crystal Structrue Of Deletion Mutant Of Aps-Kinase Domain
Of Human Paps-Synthetase 1 In Complex With Cyclic Paps
And Dadp
pdb|2PEZ|B Chain B, Crystal Structrue Of Deletion Mutant Of Aps-Kinase Domain
Of Human Paps-Synthetase 1 In Complex With Cyclic Paps
And Dadp
Length = 179
Score = 202 bits (514), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 90/170 (52%), Positives = 121/170 (71%)
Query: 27 FPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAEC 86
GLSGAGKT++S +E YL+ GIP Y LDGDN+R G+N NL FS EDR ENVRR AE
Sbjct: 10 LTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEV 69
Query: 87 AKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKK 146
AK+FA+ G + + SF+SP R+ AR+IH A+L FFEVFV+ P+ +CEQRDVKG YKK
Sbjct: 70 AKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKK 129
Query: 147 AREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLI 196
AR G+IK FTG+ YE P+ P+L+L+T + V C V++++ + ++
Sbjct: 130 ARAGEIKGFTGIDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQERDIV 179
>pdb|2AX4|A Chain A, Crystal Structure Of The Kinase Domain Of Human 3'-
Phosphoadenosine 5'-Phosphosulphate Synthetase 2
pdb|2AX4|B Chain B, Crystal Structure Of The Kinase Domain Of Human 3'-
Phosphoadenosine 5'-Phosphosulphate Synthetase 2
pdb|2AX4|C Chain C, Crystal Structure Of The Kinase Domain Of Human 3'-
Phosphoadenosine 5'-Phosphosulphate Synthetase 2
pdb|2AX4|D Chain D, Crystal Structure Of The Kinase Domain Of Human 3'-
Phosphoadenosine 5'-Phosphosulphate Synthetase 2
Length = 198
Score = 197 bits (502), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 88/169 (52%), Positives = 123/169 (72%)
Query: 29 GLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAK 88
GLSGAGKT+ISF +E YL++ IP Y+LDGDN+R+G+N NL FS DR EN+RR AE AK
Sbjct: 29 GLSGAGKTTISFALEEYLVSHAIPCYSLDGDNVRHGLNRNLGFSPGDREENIRRIAEVAK 88
Query: 89 MFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAR 148
+FA+ G + + SF+SP A R+ AR+IH +A L FFE+FV+ P+ ICE RDVKG YK+AR
Sbjct: 89 LFADAGLVCITSFISPFAKDRENARKIHESAGLPFFEIFVDAPLNICESRDVKGLYKRAR 148
Query: 149 EGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIP 197
G+IK FTG+ YE P+ P+ +L+T V C + V++++ + ++P
Sbjct: 149 AGEIKGFTGIDSDYEKPETPERVLKTNLSTVSDCVHQVVELLQEQNIVP 197
>pdb|1D6J|A Chain A, Crystal Structure Of Adenosine 5'-Phosphosulfate (Aps)
Kinase From Penicillium Chrysogenum
pdb|1D6J|B Chain B, Crystal Structure Of Adenosine 5'-Phosphosulfate (Aps)
Kinase From Penicillium Chrysogenum
pdb|1M7G|A Chain A, Crystal Structure Of Aps Kinase From Penicillium
Chrysogenum: Ternary Structure With Adp And Aps
pdb|1M7G|B Chain B, Crystal Structure Of Aps Kinase From Penicillium
Chrysogenum: Ternary Structure With Adp And Aps
pdb|1M7G|C Chain C, Crystal Structure Of Aps Kinase From Penicillium
Chrysogenum: Ternary Structure With Adp And Aps
pdb|1M7G|D Chain D, Crystal Structure Of Aps Kinase From Penicillium
Chrysogenum: Ternary Structure With Adp And Aps
pdb|1M7H|A Chain A, Crystal Structure Of Aps Kinase From Penicillium
Chrysogenum: Structure With Aps Soaked Out Of One Dimer
pdb|1M7H|B Chain B, Crystal Structure Of Aps Kinase From Penicillium
Chrysogenum: Structure With Aps Soaked Out Of One Dimer
pdb|1M7H|C Chain C, Crystal Structure Of Aps Kinase From Penicillium
Chrysogenum: Structure With Aps Soaked Out Of One Dimer
pdb|1M7H|D Chain D, Crystal Structure Of Aps Kinase From Penicillium
Chrysogenum: Structure With Aps Soaked Out Of One Dimer
Length = 211
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 88/188 (46%), Positives = 126/188 (67%), Gaps = 7/188 (3%)
Query: 20 QSNICLLFPGLSGAGKTSISFQIESYLIA-QGIPAYALDGDNLRNGINANLAFSEEDRNE 78
Q + + GLS +GK++++ ++E L+ + + AY LDGDN+R G+N +L FSE DRNE
Sbjct: 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNE 82
Query: 79 NVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNAN------LEFFEVFVNTPV 132
N+RR AE AK+FA+ IA+ SF+SP RD AR++H A L F EV+V+ PV
Sbjct: 83 NIRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPV 142
Query: 133 EICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAA 192
E+ EQRD KG YKKAREG IK FTG+S PYEAP NP++ ++ +PV+ ++D +
Sbjct: 143 EVAEQRDPKGLYKKAREGVIKEFTGISAPYEAPANPEVHVKNYELPVQDAVKQIIDYLDT 202
Query: 193 KGLIPARQ 200
KG +PA++
Sbjct: 203 KGYLPAKK 210
>pdb|3CR7|A Chain A, Crystal Structure Of N-Terminal Truncation Of Aps Kinase
From Penicillium Chrysogenum: Ternary Structure With Adp
And Paps
pdb|3CR7|B Chain B, Crystal Structure Of N-Terminal Truncation Of Aps Kinase
From Penicillium Chrysogenum: Ternary Structure With Adp
And Paps
pdb|3CR7|C Chain C, Crystal Structure Of N-Terminal Truncation Of Aps Kinase
From Penicillium Chrysogenum: Ternary Structure With Adp
And Paps
pdb|3CR7|D Chain D, Crystal Structure Of N-Terminal Truncation Of Aps Kinase
From Penicillium Chrysogenum: Ternary Structure With Adp
And Paps
Length = 197
Score = 185 bits (470), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 88/188 (46%), Positives = 126/188 (67%), Gaps = 7/188 (3%)
Query: 20 QSNICLLFPGLSGAGKTSISFQIESYLIA-QGIPAYALDGDNLRNGINANLAFSEEDRNE 78
Q + + GLS +GK++++ ++E L+ + + AY LDGDN+R G+N +L FSE DRNE
Sbjct: 1 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNE 60
Query: 79 NVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNAN------LEFFEVFVNTPV 132
N+RR AE AK+FA+ IA+ SF+SP RD AR++H A L F EV+V+ PV
Sbjct: 61 NIRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPV 120
Query: 133 EICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAA 192
E+ EQRD KG YKKAREG IK FTG+S PYEAP NP++ ++ +PV+ ++D +
Sbjct: 121 EVAEQRDPKGLYKKAREGVIKEFTGISAPYEAPANPEVHVKNYELPVQDAVKQIIDYLDT 180
Query: 193 KGLIPARQ 200
KG +PA++
Sbjct: 181 KGYLPAKK 188
>pdb|3UIE|A Chain A, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Amppnp And Aps
pdb|3UIE|B Chain B, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Amppnp And Aps
pdb|3UIE|C Chain C, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Amppnp And Aps
pdb|4FXP|A Chain A, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Sulfate And
Aps
pdb|4FXP|B Chain B, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Sulfate And
Aps
pdb|4FXP|C Chain C, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Sulfate And
Aps
Length = 200
Score = 144 bits (363), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 76/181 (41%), Positives = 107/181 (59%), Gaps = 5/181 (2%)
Query: 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNEN 79
Q + GLSG+GK++++ + L +G Y LDGDN+R+G+N +L+F EDR EN
Sbjct: 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLNRDLSFKAEDRAEN 82
Query: 80 VRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRD 139
+RR E AK+FA+ G I + S +SP RD R + +F EVF++ P+ +CE RD
Sbjct: 83 IRRVGEVAKLFADAGIICIASLISPYRTDRDACRSLLPEG--DFVEVFMDVPLSVCEARD 140
Query: 140 VKGHYKKAREGKIKSFTGVSQPYEAPKNPDLIL--ETVNVPVEKCANSVLDMIAAKGLIP 197
KG YK AR GKIK FTG+ PYE P N ++ L E P+E A V+ + KG +
Sbjct: 141 PKGLYKLARAGKIKGFTGIDDPYEPPLNCEISLGREGGTSPIEM-AEKVVGYLDNKGYLQ 199
Query: 198 A 198
A
Sbjct: 200 A 200
>pdb|2GKS|A Chain A, Crystal Structure Of The Bi-Functional Atp Sulfurylase-Aps
Kinase From Aquifex Aeolicus, A Chemolithotrophic
Thermophile
pdb|2GKS|B Chain B, Crystal Structure Of The Bi-Functional Atp Sulfurylase-Aps
Kinase From Aquifex Aeolicus, A Chemolithotrophic
Thermophile
Length = 546
Score = 137 bits (345), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 72/187 (38%), Positives = 111/187 (59%), Gaps = 5/187 (2%)
Query: 10 ESWLRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANL 69
E+++ K+G C+ GL AGK++I+ + + L A+G LDGD +R ++ L
Sbjct: 363 ETYVPKHKQG---FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGL 419
Query: 70 AFSEEDRNENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVN 129
FS+EDR N+ R A + + +C+ VSP +AR++ R + +F EVFV+
Sbjct: 420 GFSKEDRITNILRVGFVASEIVKHNGVVICALVSPYRSARNQVRNMMEEG--KFIEVFVD 477
Query: 130 TPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDM 189
PVE+CE+RDVKG YKKA+EG IK FTGV PYE P P++ ++T + E+ A +L+
Sbjct: 478 APVEVCEERDVKGLYKKAKEGLIKGFTGVDDPYEPPVAPEVRVDTTKLTPEESALKILEF 537
Query: 190 IAAKGLI 196
+ +G I
Sbjct: 538 LKKEGFI 544
>pdb|2YVU|A Chain A, Crystal Structure Of Ape1195
pdb|2YVU|B Chain B, Crystal Structure Of Ape1195
Length = 186
Score = 128 bits (322), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 104/180 (57%)
Query: 13 LRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFS 72
L +K + I + GL G+GKT+I+ ++ L +G LDGD R ++ F+
Sbjct: 4 LTTYKCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGAGFT 63
Query: 73 EEDRNENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPV 132
E+R +++R A A++ A G I +CSFVSP AR+ R I + F E++V +
Sbjct: 64 REERLRHLKRIAWIARLLARNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASL 123
Query: 133 EICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAA 192
E +RD KG YKKA +G++++FTG++ PYE P+NP L+L+T + +E + + ++ A
Sbjct: 124 EEVIRRDPKGLYKKALKGELENFTGITDPYEPPENPQLVLDTESNTIEHNVSYLYSLVKA 183
>pdb|3CR8|A Chain A, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|B Chain B, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|C Chain C, Hexameric Aps Kinase From Thiobacillus Denitrificans
Length = 552
Score = 114 bits (284), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 97/178 (54%), Gaps = 2/178 (1%)
Query: 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYAL-DGDNLRNGINANLAFSEEDRNE 78
+ + F GLSGAGK++++ + + L+ G L DGD +R +++ L FS+ R+
Sbjct: 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDV 426
Query: 79 NVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQR 138
NVRR A + IA+C+ ++P R R + F E+ V TP+E CE R
Sbjct: 427 NVRRIGFVASEITKNRGIAICAPIAPYRQTRRDVRAMIEAVG-GFVEIHVATPIETCESR 485
Query: 139 DVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLI 196
D KG Y KAR G I FTGVS PYE P+ P+L ++T + +++ +L + +G +
Sbjct: 486 DRKGLYAKARAGLIPEFTGVSDPYEVPETPELAIDTTGLAIDEAVQQILLKLEHEGYL 543
>pdb|1M8P|A Chain A, Crystal Structure Of P. Chrysogenum Atp Sulfurylase In The
T-State
pdb|1M8P|B Chain B, Crystal Structure Of P. Chrysogenum Atp Sulfurylase In The
T-State
pdb|1M8P|C Chain C, Crystal Structure Of P. Chrysogenum Atp Sulfurylase In The
T-State
Length = 573
Score = 90.9 bits (224), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 94/174 (54%), Gaps = 2/174 (1%)
Query: 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD-GDNLRNGINANLAFSEEDRNENVRR 82
+ G +GK +I+ ++ L QG + +L GD +R+ +++ L F+ EDR+ N++R
Sbjct: 398 TIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNIQR 457
Query: 83 AAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG 142
A A G + + ++P +R AR+ A FF V V TP+E CEQ D +G
Sbjct: 458 IAFVATELTRAGAAVIAAPIAPYEESRKFARDAVSQAG-SFFLVHVATPLEHCEQSDKRG 516
Query: 143 HYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLI 196
Y AR G+IK FTGV PYE P+ DL+++ V + ++ ++ ++G +
Sbjct: 517 IYAAARRGEIKGFTGVDDPYETPEKADLVVDFSKQSVRSIVHEIILVLESQGFL 570
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 205 EALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTL-DSNVNQSVAIVLAV 263
E+LP + + L +++I G SPL+GFM + ++ + N L D NV S+ I L
Sbjct: 29 ESLPAVTLTERQLCDLELIMNGGFSPLEGFMNQADYDRVCEDNRLADGNVF-SMPITLDA 87
Query: 264 TGE--DKQRLE 272
+ E D+++L+
Sbjct: 88 SQEVIDEKKLQ 98
>pdb|1I2D|A Chain A, Crystal Structure Of Atp Sulfurylase From Penicillium
Chrysogenum
pdb|1I2D|B Chain B, Crystal Structure Of Atp Sulfurylase From Penicillium
Chrysogenum
pdb|1I2D|C Chain C, Crystal Structure Of Atp Sulfurylase From Penicillium
Chrysogenum
Length = 573
Score = 90.9 bits (224), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 94/174 (54%), Gaps = 2/174 (1%)
Query: 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD-GDNLRNGINANLAFSEEDRNENVRR 82
+ G +GK +I+ ++ L QG + +L GD +R+ +++ L F+ EDR+ N++R
Sbjct: 398 TIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNIQR 457
Query: 83 AAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG 142
A A G + + ++P +R AR+ A FF V V TP+E CEQ D +G
Sbjct: 458 IAFVATELTRAGAAVIAAPIAPYEESRKFARDAVSQAG-SFFLVHVATPLEHCEQSDKRG 516
Query: 143 HYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLI 196
Y AR G+IK FTGV PYE P+ DL+++ V + ++ ++ ++G +
Sbjct: 517 IYAAARRGEIKGFTGVDDPYETPEKADLVVDFSKQSVRSIVHEIILVLESQGFL 570
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 205 EALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTL-DSNVNQSVAIVLAV 263
E+LP + + L +++I G SPL+GFM + ++ + N L D NV S+ I L
Sbjct: 29 ESLPAVTLTERQLCDLELIMNGGFSPLEGFMNQADYDRVCEDNRLADGNVF-SMPITLDA 87
Query: 264 TGE--DKQRLE 272
+ E D+++L+
Sbjct: 88 SQEVIDEKKLQ 98
>pdb|2QJF|A Chain A, Crystal Structure Of Atp-Sulfurylase Domain Of Human Paps
Synthetase 1
pdb|2QJF|B Chain B, Crystal Structure Of Atp-Sulfurylase Domain Of Human Paps
Synthetase 1
Length = 405
Score = 84.3 bits (207), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 52/70 (74%), Gaps = 2/70 (2%)
Query: 205 EALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFN-TLDSNV-NQSVAIVLA 262
E LP L I +D+QWVQV+AEGW++PL GFMRE E+L+ +HF+ LD V N SV IVL
Sbjct: 33 ETLPALKINKVDMQWVQVLAEGWATPLNGFMREREYLQCLHFDCLLDGGVINLSVPIVLT 92
Query: 263 VTGEDKQRLE 272
T EDK+RL+
Sbjct: 93 ATHEDKERLD 102
>pdb|1V47|A Chain A, Crystal Structure Of Atp Sulfurylase From Thermus
Thermophillus Hb8 In Complex With Aps
pdb|1V47|B Chain B, Crystal Structure Of Atp Sulfurylase From Thermus
Thermophillus Hb8 In Complex With Aps
Length = 349
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 203 FIEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVL 261
+E LP L+IG + ++ +A G P+KGFM +E L H L + ++ I+L
Sbjct: 1 MVETLPALEIGEDERLDLENLATGAFFPVKGFMTREEALSVAHEMRLPTGEVWTIPILL 59
>pdb|1EU8|A Chain A, Structure Of Trehalose Maltose Binding Protein From
Thermococcus Litoralis
Length = 409
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 211 DIGVIDLQWV-QVIAEGWSSPLKGFMREDEFLKTIHFNTL 249
D+ ++D+ W+ Q IA GW PL ++++D + ++ F ++
Sbjct: 64 DVFLMDVAWLGQFIASGWLEPLDDYVQKDNYDLSVFFQSV 103
>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7H|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|I Chain I, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7L|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
Length = 697
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 14 RDFKEGQSNICLLFPGLSGAGKTSISFQIESYL 46
R ++ Q N C++ G SGAGKT S +I +L
Sbjct: 86 RSMRQSQENQCVIISGESGAGKTEASKKIMQFL 118
>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|B Chain B, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|C Chain C, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|D Chain D, Motor Domain Of Myoe, A Class-I Myosin
Length = 697
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 14 RDFKEGQSNICLLFPGLSGAGKTSISFQIESYL 46
R ++ Q N C++ G SGAGKT S +I +L
Sbjct: 86 RSMRQSQENQCVIISGESGAGKTEASKKIMQFL 118
>pdb|4EUN|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502144
From Janibacter Sp. Htcc2649), Unliganded Structure
Length = 200
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 58/138 (42%), Gaps = 6/138 (4%)
Query: 12 WLRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAF 71
+ + G+ ++ G+SG+GKT+I+ + + A A + +
Sbjct: 19 YFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRGIPL 78
Query: 72 SEEDRNENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTP 131
++EDR +R AE A+ G + + + RD RE +++F ++ P
Sbjct: 79 TDEDRWPWLRSLAEWMDARADAGVSTIITCSALKRTYRDVLRE--GPPSVDFLH--LDGP 134
Query: 132 VEICEQRDVK--GHYKKA 147
E+ + R K GH+ A
Sbjct: 135 AEVIKGRMSKREGHFMPA 152
>pdb|3CIO|A Chain A, The Kinase Domain Of Escherichia Coli Tyrosine Kinase Etk
pdb|3CIO|D Chain D, The Kinase Domain Of Escherichia Coli Tyrosine Kinase Etk
Length = 299
Score = 30.8 bits (68), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 10/123 (8%)
Query: 18 EGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANL--AFSEED 75
E ++NI ++ +GKT +S + + + +D D LR G + NL +E
Sbjct: 101 ETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDAD-LRRGYSHNLFTVSNEHG 159
Query: 76 RNENVRRAAECAKM---FAECGFIALCSFVSPTAAA----RDRAREIHRNANLEFFEVFV 128
+E + E K+ F + GF + P + RDR R++ AN + V V
Sbjct: 160 LSEYLAGKDELNKVIQHFGKGGFDVITRGQVPPNPSELLMRDRMRQLLEWANDHYDLVIV 219
Query: 129 NTP 131
+TP
Sbjct: 220 DTP 222
>pdb|1ZU4|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group P21212
pdb|1ZU5|A Chain A, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
pdb|1ZU5|B Chain B, Crystal Structure Of Ftsy From Mycoplasma Mycoides- Space
Group H32
Length = 320
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 15 DFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANL 69
DFKE + NI +L G++G GKT+ ++ +Y G D R G L
Sbjct: 99 DFKENRLNIFMLV-GVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQL 152
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain
In Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain
In Complex With Arl1
Length = 166
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEED 75
G + +L GL GAGKT+I ++++ + IP G N+ NL F D
Sbjct: 1 GTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTI---GFNVETVTYKNLKFQVWD 54
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 11 SWLRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLA 70
SWL G+ + +L GL AGKTSI ++++ I IP G N+ N++
Sbjct: 7 SWLSKLL-GKKEMRILMVGLDAAGKTSILYKLKLGEIVTTIPTI---GFNVETVEYKNIS 62
Query: 71 FSEED 75
F+ D
Sbjct: 63 FTVWD 67
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 41/111 (36%), Gaps = 18/111 (16%)
Query: 142 GHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIPARQF 201
GH R G ++ S PY+ + P + L ++A+ P
Sbjct: 293 GHAVLERYGXTETNXNTSNPYDGDRVPGAV------------GPALPGVSARVTDPETG- 339
Query: 202 FFIEALPRLDIGVIDLQWVQVIAEGWSSP--LKGFMREDEFLKTIHFNTLD 250
+ LPR DIG I+++ V W P K R+D F T +D
Sbjct: 340 ---KELPRGDIGXIEVKGPNVFKGYWRXPEKTKSEFRDDGFFITGDLGKID 387
>pdb|2V3C|C Chain C, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
pdb|2V3C|D Chain D, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
Length = 432
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 8 GKESWLRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR 62
G+E+ + + N+ LL G+ G+GKT+ + ++ Y+ +G+ + D R
Sbjct: 86 GEEAKKLELNPKKQNVILLV-GIQGSGKTTTAAKLARYIQKRGLKPALIAADTYR 139
>pdb|3NDB|B Chain B, Crystal Structure Of A Signal Sequence Bound To The Signal
Recognition Particle
Length = 454
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 8 GKESWLRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR 62
G+E+ + + N+ LL G+ G+GKT+ + ++ Y+ +G+ + D R
Sbjct: 86 GEEAKKLELNPKKQNVILLV-GIQGSGKTTTAAKLARYIQKRGLKPALIAADTYR 139
>pdb|2UX8|A Chain A, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|B Chain B, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|C Chain C, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|D Chain D, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|E Chain E, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|F Chain F, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|G Chain G, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|H Chain H, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate
Length = 297
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 9/65 (13%)
Query: 30 LSGAGKTS------ISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRA 83
++G GK++ I++++E+ + A+G LDG L+ G N+A+ + + A
Sbjct: 66 VTGRGKSALEDHFDIAYELEATMAARGKSLDVLDGTRLKPG---NIAYVRQQEPMGLGHA 122
Query: 84 AECAK 88
CA+
Sbjct: 123 VWCAR 127
>pdb|3C8U|A Chain A, Crystal Structure Of Putative Fructose Transport System
Kinase (Yp_612366.1) From Silicibacter Sp. Tm1040 At
1.95 A Resolution
Length = 208
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 29 GLSGAGKTSISFQIESYLIAQGIPAYAL--DGDNLRN 63
G G+GK+++S + + L AQG+PA + DG +L N
Sbjct: 29 GAPGSGKSTLSNPLAAALSAQGLPAEVVPXDGFHLDN 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,084,996
Number of Sequences: 62578
Number of extensions: 329768
Number of successful extensions: 928
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 894
Number of HSP's gapped (non-prelim): 34
length of query: 272
length of database: 14,973,337
effective HSP length: 97
effective length of query: 175
effective length of database: 8,903,271
effective search space: 1558072425
effective search space used: 1558072425
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)