Query psy17388
Match_columns 272
No_of_seqs 280 out of 1821
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 21:10:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17388.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17388hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4238|consensus 100.0 5E-52 1.1E-56 362.7 16.5 255 18-272 46-324 (627)
2 COG0529 CysC Adenylylsulfate k 100.0 7.8E-41 1.7E-45 267.5 20.5 188 6-197 9-196 (197)
3 KOG0635|consensus 100.0 2.7E-35 5.8E-40 229.4 16.7 190 4-197 15-205 (207)
4 PF01583 APS_kinase: Adenylyls 100.0 2.1E-33 4.6E-38 225.1 17.7 155 21-177 1-155 (156)
5 PRK03846 adenylylsulfate kinas 99.9 1.2E-25 2.7E-30 189.0 20.3 181 14-196 16-196 (198)
6 TIGR00455 apsK adenylylsulfate 99.9 6.1E-25 1.3E-29 182.7 20.3 175 14-190 10-184 (184)
7 PF14306 PUA_2: PUA-like domai 99.9 2.9E-27 6.3E-32 190.4 4.9 68 204-271 26-93 (160)
8 PRK00889 adenylylsulfate kinas 99.9 8.8E-24 1.9E-28 174.2 20.5 173 20-196 2-174 (175)
9 PRK05537 bifunctional sulfate 99.9 1.1E-23 2.5E-28 201.6 20.2 176 20-196 390-566 (568)
10 PRK05506 bifunctional sulfate 99.9 5.9E-23 1.3E-27 200.2 20.8 181 14-196 452-632 (632)
11 cd02027 APSK Adenosine 5'-phos 99.9 3E-22 6.6E-27 161.0 16.2 149 24-174 1-149 (149)
12 PRK04149 sat sulfate adenylylt 99.9 4.4E-23 9.6E-28 187.8 6.7 68 204-271 28-95 (391)
13 cd00517 ATPS ATP-sulfurylase. 99.9 1E-22 2.2E-27 183.5 6.7 65 207-271 1-65 (353)
14 TIGR00339 sopT ATP sulphurylas 99.9 1.1E-22 2.4E-27 185.3 6.7 68 204-271 24-91 (383)
15 COG2046 MET3 ATP sulfurylase ( 99.9 9.5E-23 2.1E-27 179.5 5.7 71 201-271 22-92 (397)
16 PRK05541 adenylylsulfate kinas 99.9 3.5E-20 7.6E-25 152.9 19.6 168 20-193 5-173 (176)
17 PRK05537 bifunctional sulfate 99.8 1.6E-21 3.5E-26 186.8 6.7 68 204-271 26-93 (568)
18 PRK06762 hypothetical protein; 99.8 1.7E-19 3.6E-24 147.4 15.0 160 21-191 1-163 (166)
19 cd00227 CPT Chloramphenicol (C 99.8 3.8E-19 8.2E-24 146.7 16.3 158 21-190 1-174 (175)
20 PF07931 CPT: Chloramphenicol 99.8 2.6E-18 5.6E-23 140.8 13.6 157 22-191 1-174 (174)
21 COG3265 GntK Gluconate kinase 99.8 1.9E-18 4.1E-23 135.0 11.7 150 28-193 1-160 (161)
22 KOG3354|consensus 99.8 4.2E-18 9E-23 133.8 12.7 160 22-192 12-188 (191)
23 TIGR03574 selen_PSTK L-seryl-t 99.8 1.5E-17 3.3E-22 144.6 16.1 161 24-192 1-169 (249)
24 COG0703 AroK Shikimate kinase 99.7 9.7E-18 2.1E-22 135.9 9.5 157 23-193 3-169 (172)
25 TIGR01313 therm_gnt_kin carboh 99.7 1.2E-16 2.6E-21 130.1 14.1 151 25-191 1-162 (163)
26 COG4088 Predicted nucleotide k 99.7 5E-16 1.1E-20 127.9 15.1 161 23-191 2-172 (261)
27 PF13671 AAA_33: AAA domain; P 99.7 4.4E-17 9.5E-22 129.3 8.2 114 24-142 1-118 (143)
28 cd02021 GntK Gluconate kinase 99.7 1.7E-16 3.7E-21 127.3 11.6 112 24-142 1-118 (150)
29 PRK13948 shikimate kinase; Pro 99.7 9.2E-17 2E-21 133.0 10.1 160 20-192 8-175 (182)
30 PF08433 KTI12: Chromatin asso 99.7 1E-15 2.2E-20 134.2 15.8 157 23-186 2-169 (270)
31 PRK00131 aroK shikimate kinase 99.7 3E-16 6.5E-21 128.4 10.3 162 21-193 3-172 (175)
32 PRK11545 gntK gluconate kinase 99.7 3.9E-15 8.4E-20 121.4 16.0 148 28-192 1-160 (163)
33 PRK13946 shikimate kinase; Pro 99.6 6.1E-16 1.3E-20 128.6 9.7 162 20-192 8-176 (184)
34 COG0645 Predicted kinase [Gene 99.6 5E-15 1.1E-19 118.9 12.6 116 22-142 1-124 (170)
35 PRK05057 aroK shikimate kinase 99.6 4.2E-15 9.1E-20 122.3 12.1 158 22-192 4-171 (172)
36 PRK13947 shikimate kinase; Pro 99.6 3.1E-15 6.7E-20 122.6 11.1 159 24-194 3-170 (171)
37 PRK13949 shikimate kinase; Pro 99.6 2E-15 4.3E-20 123.8 8.9 156 24-190 3-169 (169)
38 PRK09825 idnK D-gluconate kina 99.6 2.3E-14 5E-19 118.3 14.5 154 21-193 2-169 (176)
39 COG1102 Cmk Cytidylate kinase 99.6 1.8E-14 3.9E-19 114.5 10.7 154 23-194 1-174 (179)
40 PHA02530 pseT polynucleotide k 99.6 5.3E-14 1.2E-18 125.4 13.6 117 22-142 2-123 (300)
41 PLN02199 shikimate kinase 99.6 2.4E-14 5.2E-19 125.5 10.3 160 21-192 101-288 (303)
42 TIGR01663 PNK-3'Pase polynucle 99.5 4.7E-14 1E-18 133.6 12.2 127 19-166 366-494 (526)
43 TIGR03575 selen_PSTK_euk L-ser 99.5 3.7E-13 8.1E-18 121.2 16.9 145 24-175 1-211 (340)
44 PRK08233 hypothetical protein; 99.5 1.1E-13 2.4E-18 114.1 12.6 161 21-196 2-181 (182)
45 PRK00625 shikimate kinase; Pro 99.5 1.5E-14 3.2E-19 119.0 7.1 152 24-190 2-171 (173)
46 PRK04182 cytidylate kinase; Pr 99.5 1.1E-13 2.4E-18 113.9 12.3 155 23-193 1-174 (180)
47 PRK08154 anaerobic benzoate ca 99.5 3.3E-14 7.1E-19 127.5 9.5 173 13-198 124-307 (309)
48 PRK03731 aroL shikimate kinase 99.5 7.5E-14 1.6E-18 114.4 9.4 156 23-192 3-170 (171)
49 PRK03839 putative kinase; Prov 99.5 1.7E-13 3.6E-18 113.4 11.4 155 24-199 2-160 (180)
50 PRK14021 bifunctional shikimat 99.5 2.7E-13 6E-18 130.0 13.0 163 21-194 5-178 (542)
51 PRK13973 thymidylate kinase; P 99.5 1.2E-12 2.6E-17 111.3 15.4 171 21-192 2-206 (213)
52 PLN02924 thymidylate kinase 99.5 1E-12 2.2E-17 112.2 14.6 165 20-192 14-203 (220)
53 PRK00698 tmk thymidylate kinas 99.5 1.5E-12 3.3E-17 109.4 14.3 171 21-192 2-202 (205)
54 PRK14532 adenylate kinase; Pro 99.4 7.6E-13 1.6E-17 110.2 11.1 160 24-191 2-186 (188)
55 TIGR02173 cyt_kin_arch cytidyl 99.4 1E-12 2.3E-17 107.2 11.8 150 23-190 1-170 (171)
56 PRK14527 adenylate kinase; Pro 99.4 1.8E-12 4E-17 108.2 13.0 163 20-190 4-190 (191)
57 PF01202 SKI: Shikimate kinase 99.4 1E-13 2.2E-18 112.4 5.3 147 31-191 1-158 (158)
58 cd00464 SK Shikimate kinase (S 99.4 2.4E-13 5.1E-18 109.2 7.2 140 25-180 2-153 (154)
59 COG0125 Tmk Thymidylate kinase 99.4 2.7E-12 5.8E-17 108.2 13.6 173 20-193 1-204 (208)
60 TIGR01359 UMP_CMP_kin_fam UMP- 99.4 7.7E-13 1.7E-17 109.5 10.2 159 24-190 1-182 (183)
61 cd01672 TMPK Thymidine monopho 99.4 2.7E-12 5.8E-17 107.0 13.2 168 23-191 1-199 (200)
62 PRK13477 bifunctional pantoate 99.4 5.6E-13 1.2E-17 125.9 8.9 166 20-192 282-503 (512)
63 COG1936 Predicted nucleotide k 99.4 7.4E-13 1.6E-17 106.6 7.5 148 23-192 1-156 (180)
64 TIGR00041 DTMP_kinase thymidyl 99.4 2.6E-12 5.7E-17 107.3 11.1 165 21-186 2-195 (195)
65 PRK13975 thymidylate kinase; P 99.4 2.3E-12 5E-17 107.8 10.6 161 22-193 2-191 (196)
66 COG0283 Cmk Cytidylate kinase 99.4 3.8E-12 8.2E-17 106.1 11.5 154 23-191 5-218 (222)
67 TIGR02322 phosphon_PhnN phosph 99.4 1.3E-11 2.9E-16 101.8 14.5 159 23-192 2-178 (179)
68 PRK10078 ribose 1,5-bisphospho 99.4 6.9E-12 1.5E-16 104.4 12.5 153 22-192 2-176 (186)
69 PRK06217 hypothetical protein; 99.4 7.1E-12 1.5E-16 104.0 12.5 103 23-143 2-105 (183)
70 PRK05416 glmZ(sRNA)-inactivati 99.4 1.4E-11 3E-16 109.1 14.1 149 21-192 5-160 (288)
71 COG3896 Chloramphenicol 3-O-ph 99.3 3.4E-11 7.5E-16 95.3 13.6 165 16-191 16-204 (205)
72 TIGR01360 aden_kin_iso1 adenyl 99.3 9.3E-12 2E-16 103.1 10.5 156 23-191 4-186 (188)
73 PRK14531 adenylate kinase; Pro 99.3 1.5E-11 3.3E-16 102.0 11.7 160 23-190 3-182 (183)
74 PRK01184 hypothetical protein; 99.3 3E-11 6.6E-16 100.1 13.1 158 23-192 2-178 (184)
75 KOG3062|consensus 99.3 9.1E-12 2E-16 103.9 9.7 170 23-198 2-182 (281)
76 PRK13976 thymidylate kinase; P 99.3 1E-10 2.3E-15 99.0 15.6 167 23-193 1-202 (209)
77 PRK07933 thymidylate kinase; V 99.3 3.3E-11 7.3E-16 102.4 11.5 163 23-190 1-211 (213)
78 PLN02200 adenylate kinase fami 99.3 7.1E-11 1.5E-15 101.8 13.4 162 20-193 41-225 (234)
79 PRK14530 adenylate kinase; Pro 99.3 6.8E-11 1.5E-15 100.6 12.9 112 22-142 3-126 (215)
80 COG4639 Predicted kinase [Gene 99.3 3E-11 6.5E-16 95.6 9.7 114 22-142 2-117 (168)
81 PF06414 Zeta_toxin: Zeta toxi 99.3 7.5E-11 1.6E-15 99.2 12.7 124 18-143 11-142 (199)
82 PRK13951 bifunctional shikimat 99.2 2E-11 4.3E-16 115.6 8.8 150 24-189 2-158 (488)
83 PRK08356 hypothetical protein; 99.2 2.1E-10 4.6E-15 96.1 13.6 158 21-192 4-192 (195)
84 PRK00023 cmk cytidylate kinase 99.2 2.4E-10 5.3E-15 97.9 13.1 36 21-61 3-38 (225)
85 TIGR00017 cmk cytidylate kinas 99.2 4E-10 8.7E-15 96.0 14.2 36 22-62 2-37 (217)
86 PRK13974 thymidylate kinase; P 99.2 6.1E-10 1.3E-14 94.6 15.2 171 21-192 2-206 (212)
87 PRK12339 2-phosphoglycerate ki 99.2 1.4E-10 3.1E-15 97.3 10.6 114 20-143 1-141 (197)
88 cd01428 ADK Adenylate kinase ( 99.2 3.2E-10 6.9E-15 94.5 12.5 113 25-143 2-126 (194)
89 PRK00279 adk adenylate kinase; 99.2 6.3E-10 1.4E-14 94.7 14.0 114 24-143 2-128 (215)
90 PRK05480 uridine/cytidine kina 99.2 3E-10 6.5E-15 96.1 11.8 42 20-63 4-45 (209)
91 PRK04040 adenylate kinase; Pro 99.2 2.4E-10 5.1E-15 95.4 10.7 163 22-190 2-187 (188)
92 PRK11860 bifunctional 3-phosph 99.2 1.4E-10 3E-15 114.0 10.8 155 22-192 442-655 (661)
93 PRK12338 hypothetical protein; 99.2 2.7E-10 6E-15 101.5 11.5 166 20-193 2-205 (319)
94 PF02223 Thymidylate_kin: Thym 99.2 7.5E-11 1.6E-15 97.9 6.9 159 27-186 1-186 (186)
95 PRK02496 adk adenylate kinase; 99.1 8.4E-10 1.8E-14 91.5 12.6 161 23-191 2-183 (184)
96 PRK14730 coaE dephospho-CoA ki 99.1 3.3E-10 7.1E-15 95.1 10.0 148 23-190 2-192 (195)
97 PRK06547 hypothetical protein; 99.1 2.9E-10 6.3E-15 93.5 9.3 112 18-142 11-138 (172)
98 PRK00081 coaE dephospho-CoA ki 99.1 2.8E-10 6.1E-15 95.4 8.6 149 23-192 3-193 (194)
99 PRK06696 uridine kinase; Valid 99.1 7.8E-11 1.7E-15 100.9 5.2 45 19-63 19-63 (223)
100 cd02030 NDUO42 NADH:Ubiquinone 99.1 9.1E-10 2E-14 94.0 11.7 24 24-47 1-24 (219)
101 PRK13808 adenylate kinase; Pro 99.1 1.1E-09 2.3E-14 98.4 12.4 164 24-194 2-195 (333)
102 PF03668 ATP_bind_2: P-loop AT 99.1 1.2E-09 2.7E-14 95.3 12.4 143 23-192 2-156 (284)
103 cd02020 CMPK Cytidine monophos 99.1 4E-10 8.7E-15 89.4 8.6 103 24-142 1-103 (147)
104 KOG3347|consensus 99.1 3.8E-10 8.1E-15 88.7 8.0 149 21-190 6-164 (176)
105 cd01673 dNK Deoxyribonucleosid 99.1 7.8E-10 1.7E-14 92.3 10.4 23 24-46 1-23 (193)
106 PRK14737 gmk guanylate kinase; 99.1 2.3E-09 4.9E-14 89.3 12.8 160 20-193 2-185 (186)
107 PRK14528 adenylate kinase; Pro 99.1 1.6E-09 3.4E-14 90.2 11.8 159 23-189 2-185 (186)
108 TIGR00152 dephospho-CoA kinase 99.1 4.2E-10 9.1E-15 93.7 7.6 144 24-187 1-187 (188)
109 PRK14733 coaE dephospho-CoA ki 99.1 1.6E-09 3.5E-14 91.2 11.2 156 20-192 4-198 (204)
110 PRK08118 topology modulation p 99.1 1.2E-09 2.5E-14 89.5 10.0 98 24-143 3-100 (167)
111 TIGR03263 guanyl_kin guanylate 99.1 2E-10 4.2E-15 94.8 5.4 156 22-191 1-179 (180)
112 COG1428 Deoxynucleoside kinase 99.1 8.6E-10 1.9E-14 91.9 8.8 25 22-46 4-28 (216)
113 PRK06761 hypothetical protein; 99.0 8.7E-10 1.9E-14 97.0 9.3 118 22-142 3-127 (282)
114 COG0563 Adk Adenylate kinase a 99.0 6.8E-09 1.5E-13 85.7 13.7 157 24-190 2-177 (178)
115 PRK07667 uridine kinase; Provi 99.0 3E-09 6.6E-14 89.0 11.7 43 21-63 16-58 (193)
116 PRK12269 bifunctional cytidyla 99.0 1.3E-09 2.8E-14 108.9 10.9 41 20-65 32-72 (863)
117 COG0237 CoaE Dephospho-CoA kin 99.0 5.9E-10 1.3E-14 93.6 7.0 153 22-193 2-193 (201)
118 PRK00300 gmk guanylate kinase; 99.0 4.1E-10 8.9E-15 94.8 5.9 159 20-193 3-185 (205)
119 PRK09518 bifunctional cytidyla 99.0 5.7E-09 1.2E-13 103.6 14.6 37 23-64 2-38 (712)
120 TIGR01351 adk adenylate kinase 99.0 2.9E-09 6.3E-14 90.3 10.8 111 25-143 2-125 (210)
121 PRK14738 gmk guanylate kinase; 99.0 6.5E-10 1.4E-14 94.0 5.9 159 19-193 10-195 (206)
122 COG0194 Gmk Guanylate kinase [ 99.0 8.7E-10 1.9E-14 90.2 6.2 161 21-193 3-183 (191)
123 PRK14734 coaE dephospho-CoA ki 99.0 1.6E-09 3.4E-14 91.3 8.0 34 23-62 2-35 (200)
124 PF13207 AAA_17: AAA domain; P 99.0 1.4E-09 3.1E-14 83.6 6.8 33 24-61 1-33 (121)
125 cd02028 UMPK_like Uridine mono 99.0 5E-09 1.1E-13 86.7 10.2 40 24-63 1-40 (179)
126 PRK07261 topology modulation p 99.0 5.6E-09 1.2E-13 85.7 10.5 99 24-143 2-100 (171)
127 COG3709 Uncharacterized compon 99.0 2.9E-08 6.2E-13 79.3 13.7 162 21-193 4-183 (192)
128 PRK14731 coaE dephospho-CoA ki 98.9 4.4E-09 9.5E-14 89.1 9.2 153 20-192 3-202 (208)
129 PTZ00451 dephospho-CoA kinase; 98.9 5.7E-09 1.2E-13 90.3 9.9 153 23-193 2-208 (244)
130 PLN02422 dephospho-CoA kinase 98.9 4.6E-09 9.9E-14 90.1 9.1 149 23-192 2-194 (232)
131 PTZ00301 uridine kinase; Provi 98.9 3.3E-08 7.3E-13 83.8 14.0 43 21-63 2-46 (210)
132 COG0572 Udk Uridine kinase [Nu 98.9 1.7E-08 3.7E-13 85.1 11.7 113 20-142 6-148 (218)
133 PLN02674 adenylate kinase 98.9 2E-08 4.4E-13 86.7 12.5 117 20-142 29-158 (244)
134 PF01591 6PF2K: 6-phosphofruct 98.9 2.7E-08 5.9E-13 84.7 12.9 121 20-140 10-142 (222)
135 cd02023 UMPK Uridine monophosp 98.9 1.6E-08 3.5E-13 84.8 10.9 38 24-63 1-38 (198)
136 PF13238 AAA_18: AAA domain; P 98.9 2.1E-09 4.6E-14 83.1 5.0 22 25-46 1-22 (129)
137 PTZ00088 adenylate kinase 1; P 98.9 1.6E-08 3.5E-13 86.8 10.4 113 21-142 5-130 (229)
138 PF00485 PRK: Phosphoribulokin 98.9 1.5E-09 3.3E-14 90.9 3.9 39 24-62 1-43 (194)
139 TIGR00235 udk uridine kinase. 98.9 5.2E-08 1.1E-12 82.4 13.3 40 20-61 4-43 (207)
140 cd02024 NRK1 Nicotinamide ribo 98.9 7.8E-09 1.7E-13 86.0 8.0 36 24-63 1-36 (187)
141 COG1660 Predicted P-loop-conta 98.8 3E-08 6.4E-13 84.9 10.8 144 23-193 2-158 (286)
142 PRK14526 adenylate kinase; Pro 98.8 6.6E-08 1.4E-12 82.0 12.9 110 24-143 2-123 (211)
143 PRK14732 coaE dephospho-CoA ki 98.8 2.4E-08 5.3E-13 83.8 9.7 146 24-191 1-189 (196)
144 PF00625 Guanylate_kin: Guanyl 98.8 3.2E-08 7E-13 82.0 10.1 158 21-192 1-182 (183)
145 cd02022 DPCK Dephospho-coenzym 98.8 9.1E-09 2E-13 85.1 5.9 34 24-63 1-34 (179)
146 PRK03333 coaE dephospho-CoA ki 98.8 2.4E-08 5.2E-13 92.5 9.3 149 23-192 2-192 (395)
147 KOG3079|consensus 98.8 1.2E-07 2.5E-12 77.4 11.9 163 20-192 6-193 (195)
148 smart00072 GuKc Guanylate kina 98.8 9.4E-08 2E-12 79.3 11.8 160 22-193 2-183 (184)
149 PRK14529 adenylate kinase; Pro 98.8 1.4E-07 2.9E-12 80.6 12.7 113 24-142 2-126 (223)
150 PRK12337 2-phosphoglycerate ki 98.8 8E-08 1.7E-12 89.4 11.5 115 20-142 253-404 (475)
151 KOG3220|consensus 98.7 1.2E-07 2.7E-12 78.2 10.7 150 23-192 2-194 (225)
152 PF01121 CoaE: Dephospho-CoA k 98.7 1.5E-08 3.1E-13 83.9 5.4 35 23-63 1-35 (180)
153 PRK15453 phosphoribulokinase; 98.7 1.2E-07 2.7E-12 83.0 10.8 44 20-63 3-46 (290)
154 PLN02348 phosphoribulokinase 98.7 1.4E-07 2.9E-12 86.3 11.4 29 20-48 47-75 (395)
155 PLN02459 probable adenylate ki 98.7 2E-07 4.2E-12 81.2 11.4 112 21-142 28-153 (261)
156 KOG0636|consensus 98.7 3E-09 6.5E-14 94.1 -0.2 70 201-270 71-144 (466)
157 PLN02842 nucleotide kinase 98.7 1.7E-07 3.7E-12 88.4 11.4 108 26-142 1-121 (505)
158 PRK09270 nucleoside triphospha 98.7 2.5E-07 5.3E-12 79.5 11.2 43 19-61 30-73 (229)
159 cd02025 PanK Pantothenate kina 98.7 1.3E-07 2.8E-12 80.8 9.2 39 24-62 1-41 (220)
160 PLN02165 adenylate isopentenyl 98.6 2.8E-07 6E-12 82.8 11.0 122 17-146 38-199 (334)
161 PTZ00322 6-phosphofructo-2-kin 98.6 6.7E-07 1.5E-11 88.2 14.2 121 22-142 215-346 (664)
162 PRK05439 pantothenate kinase; 98.6 3.5E-07 7.5E-12 81.7 10.8 45 19-63 83-129 (311)
163 cd02019 NK Nucleoside/nucleoti 98.6 2E-07 4.4E-12 64.7 7.3 33 24-58 1-33 (69)
164 PRK14490 putative bifunctional 98.6 4E-08 8.6E-13 90.4 4.2 163 20-193 3-169 (369)
165 PF00406 ADK: Adenylate kinase 98.6 4E-07 8.6E-12 73.0 9.5 108 27-141 1-122 (151)
166 PLN02772 guanylate kinase 98.5 3.3E-07 7.2E-12 83.8 8.7 165 20-195 133-321 (398)
167 PRK07429 phosphoribulokinase; 98.5 5.3E-07 1.1E-11 81.4 9.9 40 20-61 6-45 (327)
168 cd02029 PRK_like Phosphoribulo 98.5 8.2E-07 1.8E-11 77.3 10.6 40 24-63 1-40 (277)
169 COG2074 2-phosphoglycerate kin 98.5 1.1E-06 2.4E-11 75.1 10.9 168 15-193 82-288 (299)
170 TIGR00554 panK_bact pantothena 98.5 3.9E-07 8.5E-12 80.8 8.5 43 20-62 60-104 (290)
171 PHA03132 thymidine kinase; Pro 98.5 4.6E-07 9.9E-12 86.8 8.6 33 22-57 257-289 (580)
172 PRK04220 2-phosphoglycerate ki 98.5 2.6E-06 5.7E-11 75.6 12.7 115 20-142 90-235 (301)
173 PRK00091 miaA tRNA delta(2)-is 98.4 1.3E-05 2.7E-10 71.9 14.6 36 20-60 2-37 (307)
174 PHA00729 NTP-binding motif con 98.3 3.2E-06 6.9E-11 72.1 9.2 27 20-46 15-41 (226)
175 PLN02318 phosphoribulokinase/u 98.3 2.8E-06 6.1E-11 81.3 9.2 28 20-47 63-90 (656)
176 cd02026 PRK Phosphoribulokinas 98.3 3.9E-06 8.3E-11 74.1 9.1 37 24-62 1-37 (273)
177 COG2019 AdkA Archaeal adenylat 98.2 1.1E-05 2.5E-10 64.9 9.9 25 22-46 4-28 (189)
178 TIGR03707 PPK2_P_aer polyphosp 98.2 1.7E-05 3.6E-10 68.0 11.1 111 18-142 27-156 (230)
179 PF08303 tRNA_lig_kinase: tRNA 98.2 1.6E-05 3.4E-10 64.1 10.1 77 25-118 2-79 (168)
180 cd00071 GMPK Guanosine monopho 98.2 8.8E-07 1.9E-11 70.0 2.8 23 24-46 1-23 (137)
181 KOG4622|consensus 98.1 1.2E-05 2.6E-10 66.3 8.4 119 23-142 2-142 (291)
182 KOG3327|consensus 98.1 5.8E-06 1.3E-10 67.6 6.1 168 20-192 3-195 (208)
183 PF13189 Cytidylate_kin2: Cyti 98.1 1E-05 2.3E-10 66.8 7.7 104 24-142 1-134 (179)
184 PLN02748 tRNA dimethylallyltra 98.1 4.2E-05 9.1E-10 72.0 12.0 41 20-65 20-62 (468)
185 COG1072 CoaA Panthothenate kin 98.1 2.6E-05 5.6E-10 67.8 9.7 44 18-61 78-123 (283)
186 TIGR00174 miaA tRNA isopenteny 98.1 7.9E-05 1.7E-09 66.0 12.7 39 24-65 1-39 (287)
187 PRK10867 signal recognition pa 98.1 7.2E-05 1.6E-09 70.0 13.0 45 20-64 98-143 (433)
188 PF00004 AAA: ATPase family as 98.0 1.9E-05 4.1E-10 60.9 7.4 35 25-62 1-35 (132)
189 TIGR03709 PPK2_rel_1 polyphosp 98.0 7.4E-05 1.6E-09 65.3 11.4 160 20-193 54-249 (264)
190 PRK00771 signal recognition pa 98.0 4.8E-05 1E-09 71.3 10.9 44 20-63 93-136 (437)
191 cd01394 radB RadB. The archaea 98.0 6.5E-05 1.4E-09 63.8 10.6 41 20-60 17-57 (218)
192 TIGR03708 poly_P_AMP_trns poly 98.0 8.5E-05 1.8E-09 70.3 12.2 110 19-142 37-165 (493)
193 PRK08084 DNA replication initi 98.0 5.5E-05 1.2E-09 65.3 10.1 41 20-60 43-83 (235)
194 PRK09361 radB DNA repair and r 98.0 6.9E-05 1.5E-09 64.0 10.4 40 20-59 21-60 (225)
195 PRK05800 cobU adenosylcobinami 98.0 7.4E-05 1.6E-09 61.3 10.1 34 23-59 2-35 (170)
196 PLN02840 tRNA dimethylallyltra 98.0 5.1E-05 1.1E-09 70.4 9.9 44 19-65 18-61 (421)
197 KOG1384|consensus 98.0 6.7E-05 1.5E-09 66.6 9.9 113 21-144 6-160 (348)
198 PF03976 PPK2: Polyphosphate k 98.0 9.1E-06 2E-10 69.6 4.4 109 20-142 29-156 (228)
199 cd03115 SRP The signal recogni 97.9 1.6E-05 3.4E-10 65.1 5.7 40 24-63 2-41 (173)
200 TIGR00064 ftsY signal recognit 97.9 1.6E-05 3.5E-10 70.1 6.1 44 20-63 70-113 (272)
201 TIGR01425 SRP54_euk signal rec 97.9 1.8E-05 3.9E-10 73.7 6.3 44 20-63 98-141 (429)
202 KOG3877|consensus 97.9 0.00018 3.9E-09 62.6 11.8 28 20-47 69-96 (393)
203 PF00448 SRP54: SRP54-type pro 97.9 1.7E-05 3.6E-10 66.6 5.5 42 22-63 1-42 (196)
204 COG4185 Uncharacterized protei 97.9 6.7E-05 1.4E-09 60.1 8.5 115 22-142 2-117 (187)
205 smart00382 AAA ATPases associa 97.9 1.1E-05 2.5E-10 61.9 4.1 42 22-63 2-43 (148)
206 TIGR00959 ffh signal recogniti 97.9 0.0002 4.3E-09 67.0 13.0 45 20-64 97-142 (428)
207 PRK14974 cell division protein 97.9 2.1E-05 4.5E-10 71.3 6.2 44 20-63 138-181 (336)
208 COG1618 Predicted nucleotide k 97.9 2E-05 4.4E-10 63.2 5.2 34 21-54 4-37 (179)
209 PRK10416 signal recognition pa 97.9 2.4E-05 5.1E-10 70.5 6.1 44 20-63 112-155 (318)
210 PRK04296 thymidine kinase; Pro 97.9 0.00016 3.4E-09 60.4 10.6 37 22-58 2-38 (190)
211 PRK13768 GTPase; Provisional 97.9 5.3E-05 1.2E-09 66.1 8.0 40 22-61 2-41 (253)
212 PRK11889 flhF flagellar biosyn 97.9 0.00018 3.9E-09 66.2 11.4 42 21-62 240-281 (436)
213 PRK09435 membrane ATPase/prote 97.8 3.5E-05 7.6E-10 69.7 6.1 42 19-60 53-94 (332)
214 cd00984 DnaB_C DnaB helicase C 97.8 0.00022 4.7E-09 61.4 10.7 41 20-60 11-52 (242)
215 CHL00181 cbbX CbbX; Provisiona 97.8 0.00095 2.1E-08 59.3 15.0 30 21-50 58-87 (287)
216 KOG3308|consensus 97.8 0.00012 2.5E-09 60.9 8.3 40 20-63 2-41 (225)
217 PRK10751 molybdopterin-guanine 97.8 4.2E-05 9.1E-10 62.8 5.5 37 20-56 4-40 (173)
218 PRK09169 hypothetical protein; 97.8 3.9E-05 8.4E-10 81.9 6.3 108 22-142 2110-2220(2316)
219 COG0541 Ffh Signal recognition 97.7 0.00046 1E-08 63.7 12.0 49 16-64 94-142 (451)
220 PRK05201 hslU ATP-dependent pr 97.7 8.1E-05 1.8E-09 68.9 6.9 38 22-62 50-87 (443)
221 TIGR03420 DnaA_homol_Hda DnaA 97.7 4.4E-05 9.5E-10 65.0 4.9 43 19-61 35-77 (226)
222 KOG2134|consensus 97.7 0.00021 4.7E-09 64.5 9.3 123 22-165 269-393 (422)
223 PRK08727 hypothetical protein; 97.7 0.0003 6.5E-09 60.6 10.0 41 20-60 39-79 (233)
224 cd02034 CooC The accessory pro 97.7 7E-05 1.5E-09 57.5 5.3 36 25-60 2-37 (116)
225 PLN02796 D-glycerate 3-kinase 97.7 5.1E-05 1.1E-09 68.6 5.0 42 20-61 98-139 (347)
226 TIGR02237 recomb_radB DNA repa 97.7 8.2E-05 1.8E-09 62.7 5.9 41 20-60 10-50 (209)
227 cd00009 AAA The AAA+ (ATPases 97.7 7.7E-05 1.7E-09 57.8 5.3 42 20-61 17-58 (151)
228 COG2256 MGS1 ATPase related to 97.7 0.00036 7.8E-09 63.7 10.2 47 9-58 35-81 (436)
229 TIGR00176 mobB molybdopterin-g 97.7 6.3E-05 1.4E-09 60.7 4.8 36 24-59 1-36 (155)
230 PF03308 ArgK: ArgK protein; 97.7 8.2E-05 1.8E-09 64.4 5.7 41 19-59 26-66 (266)
231 smart00763 AAA_PrkA PrkA AAA d 97.7 4.8E-05 1E-09 69.1 4.3 42 20-61 76-121 (361)
232 PLN03046 D-glycerate 3-kinase; 97.7 6.9E-05 1.5E-09 69.2 5.4 43 20-62 210-252 (460)
233 TIGR03499 FlhF flagellar biosy 97.6 8.2E-05 1.8E-09 66.0 5.6 42 21-62 193-236 (282)
234 PF13173 AAA_14: AAA domain 97.6 0.00069 1.5E-08 52.6 10.2 102 22-138 2-104 (128)
235 COG0552 FtsY Signal recognitio 97.6 0.001 2.2E-08 59.5 12.0 45 19-63 136-180 (340)
236 KOG0744|consensus 97.6 0.00015 3.3E-09 64.4 6.5 25 22-46 177-201 (423)
237 PRK14962 DNA polymerase III su 97.6 0.0041 8.9E-08 59.1 16.7 28 20-47 34-61 (472)
238 TIGR03877 thermo_KaiC_1 KaiC d 97.6 0.0011 2.3E-08 57.3 11.7 41 20-60 19-59 (237)
239 COG1703 ArgK Putative periplas 97.6 9.8E-05 2.1E-09 64.9 5.1 42 18-59 47-88 (323)
240 PF03205 MobB: Molybdopterin g 97.6 0.00012 2.6E-09 58.0 5.3 37 23-59 1-38 (140)
241 cd01983 Fer4_NifH The Fer4_Nif 97.6 0.00011 2.4E-09 53.1 4.8 34 24-57 1-34 (99)
242 TIGR00750 lao LAO/AO transport 97.6 0.00012 2.7E-09 65.4 5.9 41 20-60 32-72 (300)
243 cd01120 RecA-like_NTPases RecA 97.6 9.7E-05 2.1E-09 58.8 4.7 37 24-60 1-37 (165)
244 TIGR00390 hslU ATP-dependent p 97.6 0.00022 4.8E-09 66.0 7.4 38 21-61 46-83 (441)
245 PRK08116 hypothetical protein; 97.6 0.00051 1.1E-08 60.5 9.4 41 22-62 114-154 (268)
246 PF05496 RuvB_N: Holliday junc 97.6 0.0001 2.2E-09 62.7 4.8 37 21-60 49-85 (233)
247 TIGR01223 Pmev_kin_anim phosph 97.6 0.0024 5.2E-08 52.2 12.4 110 24-139 1-132 (182)
248 PRK05642 DNA replication initi 97.5 0.00038 8.3E-09 60.0 8.3 41 22-62 45-85 (234)
249 COG4240 Predicted kinase [Gene 97.5 0.00012 2.6E-09 62.0 4.9 44 20-63 48-92 (300)
250 KOG1532|consensus 97.5 0.00037 8.1E-09 60.6 8.0 41 20-60 17-57 (366)
251 PRK12726 flagellar biosynthesi 97.5 0.00016 3.5E-09 66.2 6.0 44 20-63 204-247 (407)
252 PRK14729 miaA tRNA delta(2)-is 97.5 0.0015 3.3E-08 58.3 12.1 41 21-65 3-43 (300)
253 cd01122 GP4d_helicase GP4d_hel 97.5 0.00076 1.7E-08 59.1 10.1 41 20-60 28-69 (271)
254 TIGR00150 HI0065_YjeE ATPase, 97.5 8.9E-05 1.9E-09 58.2 3.7 27 20-46 20-46 (133)
255 PRK12724 flagellar biosynthesi 97.5 0.00014 3.1E-09 67.4 5.6 43 21-63 222-265 (432)
256 COG1341 Predicted GTPase or GT 97.5 0.0014 3E-08 60.1 11.7 41 20-60 71-111 (398)
257 PRK12377 putative replication 97.5 0.00093 2E-08 58.1 10.2 42 22-63 101-142 (248)
258 PRK12402 replication factor C 97.5 0.0027 5.9E-08 57.2 13.7 37 23-59 37-75 (337)
259 PF03029 ATP_bind_1: Conserved 97.5 8.7E-05 1.9E-09 64.2 3.7 34 27-60 1-34 (238)
260 KOG0733|consensus 97.5 0.0006 1.3E-08 65.2 9.3 43 20-65 221-263 (802)
261 COG0324 MiaA tRNA delta(2)-iso 97.5 0.0026 5.5E-08 56.8 12.9 43 21-66 2-44 (308)
262 COG4619 ABC-type uncharacteriz 97.5 0.00027 5.8E-09 57.4 6.0 27 20-46 27-53 (223)
263 COG4608 AppF ABC-type oligopep 97.5 0.0016 3.4E-08 56.8 11.0 41 20-61 37-77 (268)
264 TIGR03881 KaiC_arch_4 KaiC dom 97.5 0.002 4.3E-08 55.0 11.7 40 20-59 18-57 (229)
265 PLN00020 ribulose bisphosphate 97.5 0.00046 9.9E-09 62.9 8.0 42 20-64 146-187 (413)
266 PF07728 AAA_5: AAA domain (dy 97.5 0.00016 3.4E-09 56.8 4.5 30 25-57 2-31 (139)
267 TIGR03015 pepcterm_ATPase puta 97.5 0.0084 1.8E-07 52.2 15.8 27 21-47 42-68 (269)
268 cd03116 MobB Molybdenum is an 97.5 0.00023 5.1E-09 57.7 5.5 36 23-58 2-37 (159)
269 PF13245 AAA_19: Part of AAA d 97.5 0.00028 6.1E-09 49.8 5.2 26 21-46 9-34 (76)
270 cd03114 ArgK-like The function 97.5 0.00016 3.6E-09 57.8 4.5 36 25-60 2-37 (148)
271 PRK14956 DNA polymerase III su 97.4 0.012 2.5E-07 55.9 17.3 28 20-47 38-65 (484)
272 PF01695 IstB_IS21: IstB-like 97.4 0.00011 2.5E-09 60.6 3.5 47 20-66 45-91 (178)
273 PRK08903 DnaA regulatory inact 97.4 0.00021 4.7E-09 61.0 5.3 42 20-61 40-81 (227)
274 PRK14961 DNA polymerase III su 97.4 0.0044 9.5E-08 57.0 14.3 28 20-47 36-63 (363)
275 PRK05973 replicative DNA helic 97.4 0.00024 5.3E-09 61.2 5.6 40 20-59 62-101 (237)
276 PRK04195 replication factor C 97.4 0.001 2.2E-08 63.4 10.4 38 18-58 35-72 (482)
277 PRK04328 hypothetical protein; 97.4 0.002 4.3E-08 56.1 11.3 40 21-60 22-61 (249)
278 PF06745 KaiC: KaiC; InterPro 97.4 0.0014 3E-08 55.9 10.0 40 21-60 18-58 (226)
279 COG1763 MobB Molybdopterin-gua 97.4 0.00024 5.1E-09 57.6 4.8 36 22-57 2-37 (161)
280 PLN03025 replication factor C 97.4 0.0042 9.1E-08 56.0 13.5 35 13-47 25-59 (319)
281 PF05673 DUF815: Protein of un 97.4 0.004 8.6E-08 53.7 12.5 48 14-61 44-91 (249)
282 PRK09183 transposase/IS protei 97.4 0.00024 5.2E-09 62.2 5.2 41 21-61 101-141 (259)
283 KOG0780|consensus 97.4 0.0014 2.9E-08 59.7 9.9 47 19-65 98-144 (483)
284 PRK06893 DNA replication initi 97.4 0.00031 6.7E-09 60.3 5.7 38 22-59 39-76 (229)
285 PF02367 UPF0079: Uncharacteri 97.4 0.0002 4.3E-09 55.4 3.9 27 20-46 13-39 (123)
286 PRK14957 DNA polymerase III su 97.4 0.016 3.6E-07 55.9 17.7 28 20-47 36-63 (546)
287 PRK14489 putative bifunctional 97.4 0.00029 6.3E-09 64.8 5.6 39 21-59 204-242 (366)
288 PRK00440 rfc replication facto 97.4 0.0046 1E-07 55.2 13.3 35 14-48 30-64 (319)
289 TIGR02880 cbbX_cfxQ probable R 97.4 0.00025 5.3E-09 63.0 4.9 41 21-61 57-101 (284)
290 cd02033 BchX Chlorophyllide re 97.4 0.00039 8.4E-09 62.9 6.1 43 20-62 29-71 (329)
291 TIGR03708 poly_P_AMP_trns poly 97.4 0.0039 8.4E-08 59.2 13.0 112 18-143 295-425 (493)
292 PRK14493 putative bifunctional 97.3 0.0003 6.4E-09 62.1 5.2 37 23-60 2-38 (274)
293 PRK09087 hypothetical protein; 97.3 0.00094 2E-08 57.3 8.2 34 22-60 44-77 (226)
294 PRK14960 DNA polymerase III su 97.3 0.015 3.2E-07 57.1 17.1 29 19-47 34-62 (702)
295 PRK14963 DNA polymerase III su 97.3 0.011 2.3E-07 56.7 16.1 31 18-48 32-62 (504)
296 cd01124 KaiC KaiC is a circadi 97.3 0.00033 7.2E-09 57.6 5.0 37 24-60 1-37 (187)
297 TIGR02236 recomb_radA DNA repa 97.3 0.0023 5.1E-08 57.3 10.9 40 21-60 94-139 (310)
298 PRK08181 transposase; Validate 97.3 0.00018 3.8E-09 63.4 3.5 43 21-63 105-147 (269)
299 PRK14952 DNA polymerase III su 97.3 0.018 3.8E-07 56.2 17.4 29 19-47 32-60 (584)
300 COG1126 GlnQ ABC-type polar am 97.3 0.00019 4.1E-09 60.5 3.3 41 20-61 26-66 (240)
301 TIGR02640 gas_vesic_GvpN gas v 97.3 0.00024 5.1E-09 62.3 4.1 34 22-58 21-54 (262)
302 PHA02544 44 clamp loader, smal 97.3 0.004 8.6E-08 55.8 12.1 38 18-58 39-76 (316)
303 PF03266 NTPase_1: NTPase; In 97.3 0.00026 5.6E-09 57.9 4.0 30 24-53 1-30 (168)
304 PRK07003 DNA polymerase III su 97.3 0.014 3.1E-07 58.0 16.5 28 20-47 36-63 (830)
305 PRK06526 transposase; Provisio 97.3 0.00016 3.4E-09 63.2 2.8 41 21-61 97-137 (254)
306 PF13191 AAA_16: AAA ATPase do 97.3 0.00029 6.3E-09 57.6 4.3 40 18-57 20-59 (185)
307 TIGR02881 spore_V_K stage V sp 97.3 0.00026 5.5E-09 62.0 4.1 28 21-48 41-68 (261)
308 TIGR03878 thermo_KaiC_2 KaiC d 97.3 0.00041 8.9E-09 60.7 5.4 39 21-59 35-73 (259)
309 PF13401 AAA_22: AAA domain; P 97.3 0.00027 5.9E-09 54.5 3.9 29 20-48 2-30 (131)
310 PRK12323 DNA polymerase III su 97.3 0.011 2.4E-07 57.9 15.5 30 18-47 34-63 (700)
311 CHL00195 ycf46 Ycf46; Provisio 97.3 0.001 2.2E-08 63.4 8.4 40 20-62 257-296 (489)
312 PF13521 AAA_28: AAA domain; P 97.3 0.00018 3.8E-09 58.3 2.8 21 25-45 2-22 (163)
313 COG1125 OpuBA ABC-type proline 97.3 0.0056 1.2E-07 53.1 11.9 41 20-61 25-65 (309)
314 PRK10463 hydrogenase nickel in 97.3 0.00036 7.7E-09 61.8 4.9 46 14-60 96-141 (290)
315 COG0467 RAD55 RecA-superfamily 97.3 0.0012 2.6E-08 57.7 8.2 43 20-62 21-63 (260)
316 PF01745 IPT: Isopentenyl tran 97.3 0.005 1.1E-07 52.0 11.4 40 23-65 2-41 (233)
317 PRK08533 flagellar accessory p 97.3 0.00053 1.2E-08 59.0 5.9 41 20-60 22-62 (230)
318 PRK14964 DNA polymerase III su 97.3 0.015 3.2E-07 55.4 16.0 30 18-47 31-60 (491)
319 PRK12723 flagellar biosynthesi 97.3 0.00043 9.4E-09 63.9 5.6 43 21-63 173-219 (388)
320 PRK06835 DNA replication prote 97.3 0.0021 4.5E-08 58.3 9.8 42 22-63 183-224 (329)
321 PRK07764 DNA polymerase III su 97.3 0.012 2.5E-07 59.6 16.1 30 18-47 33-62 (824)
322 PTZ00202 tuzin; Provisional 97.3 0.001 2.2E-08 62.0 7.7 109 21-135 285-403 (550)
323 PRK05703 flhF flagellar biosyn 97.2 0.00043 9.4E-09 64.8 5.3 43 21-63 220-264 (424)
324 PRK14722 flhF flagellar biosyn 97.2 0.0005 1.1E-08 63.1 5.6 42 21-62 136-179 (374)
325 cd01123 Rad51_DMC1_radA Rad51_ 97.2 0.0018 3.9E-08 55.4 8.7 41 20-60 17-63 (235)
326 PF05729 NACHT: NACHT domain 97.2 0.00029 6.4E-09 56.3 3.6 28 23-50 1-28 (166)
327 KOG1533|consensus 97.2 0.00027 5.9E-09 60.1 3.4 36 25-60 5-40 (290)
328 PF03796 DnaB_C: DnaB-like hel 97.2 0.0029 6.2E-08 55.2 10.1 40 20-59 17-57 (259)
329 TIGR01650 PD_CobS cobaltochela 97.2 0.00037 8E-09 62.7 4.5 33 22-57 64-96 (327)
330 PF00910 RNA_helicase: RNA hel 97.2 0.00026 5.6E-09 53.4 3.0 23 25-47 1-23 (107)
331 PRK06645 DNA polymerase III su 97.2 0.021 4.6E-07 54.7 16.4 30 18-47 39-68 (507)
332 PRK06921 hypothetical protein; 97.2 0.0012 2.7E-08 58.0 7.5 39 21-59 116-155 (266)
333 PRK03992 proteasome-activating 97.2 0.00037 7.9E-09 64.7 4.3 39 20-61 163-201 (389)
334 PRK14494 putative molybdopteri 97.2 0.0006 1.3E-08 58.5 5.2 35 23-57 2-36 (229)
335 TIGR00665 DnaB replicative DNA 97.2 0.0033 7.2E-08 59.1 10.7 40 20-59 193-233 (434)
336 PRK15455 PrkA family serine pr 97.2 0.00097 2.1E-08 64.1 7.0 42 20-63 101-142 (644)
337 TIGR02012 tigrfam_recA protein 97.2 0.00075 1.6E-08 60.8 6.0 40 21-60 54-93 (321)
338 KOG2004|consensus 97.2 0.00044 9.5E-09 67.2 4.6 40 15-57 431-470 (906)
339 KOG0738|consensus 97.2 0.0047 1E-07 56.4 10.8 27 20-46 242-269 (491)
340 PRK06067 flagellar accessory p 97.2 0.00073 1.6E-08 58.0 5.6 41 20-60 23-63 (234)
341 PRK00080 ruvB Holliday junctio 97.2 0.00057 1.2E-08 61.8 5.1 36 19-57 48-83 (328)
342 cd00820 PEPCK_HprK Phosphoenol 97.2 0.00041 8.9E-09 52.3 3.5 24 20-43 13-36 (107)
343 TIGR01618 phage_P_loop phage n 97.2 0.001 2.2E-08 56.7 6.3 36 20-62 10-45 (220)
344 PRK13342 recombination factor 97.2 0.00068 1.5E-08 63.4 5.7 43 12-57 26-68 (413)
345 TIGR00635 ruvB Holliday juncti 97.2 0.00063 1.4E-08 60.7 5.2 34 20-56 28-61 (305)
346 PRK14951 DNA polymerase III su 97.2 0.011 2.4E-07 57.8 14.1 30 18-47 34-63 (618)
347 PRK14958 DNA polymerase III su 97.1 0.02 4.4E-07 55.0 15.7 29 19-47 35-63 (509)
348 cd01131 PilT Pilus retraction 97.1 0.00074 1.6E-08 56.6 5.3 25 24-48 3-27 (198)
349 PRK13886 conjugal transfer pro 97.1 0.0034 7.4E-08 54.2 9.4 41 22-62 3-43 (241)
350 PF07724 AAA_2: AAA domain (Cd 97.1 0.00071 1.5E-08 55.5 5.0 40 22-61 3-43 (171)
351 PHA02575 1 deoxynucleoside mon 97.1 0.00034 7.4E-09 59.5 3.1 23 23-45 1-23 (227)
352 PF03215 Rad17: Rad17 cell cyc 97.1 0.00057 1.2E-08 65.5 4.9 35 12-46 34-69 (519)
353 PRK06620 hypothetical protein; 97.1 0.0024 5.2E-08 54.3 8.2 24 23-46 45-68 (214)
354 cd00550 ArsA_ATPase Oxyanion-t 97.1 0.0007 1.5E-08 59.1 5.0 38 23-60 1-38 (254)
355 TIGR02397 dnaX_nterm DNA polym 97.1 0.03 6.6E-07 50.8 16.0 30 18-47 32-61 (355)
356 PRK14949 DNA polymerase III su 97.1 0.026 5.7E-07 57.1 16.5 28 20-47 36-63 (944)
357 cd02035 ArsA ArsA ATPase funct 97.1 0.0007 1.5E-08 57.6 4.8 39 24-62 1-39 (217)
358 KOG4235|consensus 97.1 0.0023 4.9E-08 53.1 7.5 24 23-46 23-46 (244)
359 KOG3078|consensus 97.1 0.0056 1.2E-07 52.4 10.1 113 21-142 14-138 (235)
360 cd00544 CobU Adenosylcobinamid 97.1 0.0006 1.3E-08 55.8 4.1 33 24-59 1-33 (169)
361 PF06309 Torsin: Torsin; Inte 97.1 0.00082 1.8E-08 52.0 4.5 34 18-51 49-82 (127)
362 PRK07994 DNA polymerase III su 97.1 0.029 6.3E-07 55.2 16.2 29 20-48 36-64 (647)
363 cd01918 HprK_C HprK/P, the bif 97.1 0.00072 1.6E-08 54.1 4.3 24 22-45 14-37 (149)
364 TIGR00362 DnaA chromosomal rep 97.1 0.0037 8E-08 58.2 9.8 40 22-61 136-177 (405)
365 TIGR01526 nadR_NMN_Atrans nico 97.1 0.0023 4.9E-08 58.0 8.1 25 22-46 162-186 (325)
366 COG0466 Lon ATP-dependent Lon 97.1 0.00071 1.5E-08 65.8 5.0 40 16-58 344-383 (782)
367 PRK14959 DNA polymerase III su 97.1 0.024 5.3E-07 55.4 15.5 28 20-47 36-63 (624)
368 COG5192 BMS1 GTP-binding prote 97.1 0.0075 1.6E-07 57.4 11.5 28 20-47 67-94 (1077)
369 PRK00149 dnaA chromosomal repl 97.1 0.0057 1.2E-07 57.8 11.1 39 23-61 149-189 (450)
370 PRK14087 dnaA chromosomal repl 97.1 0.0047 1E-07 58.4 10.5 41 23-63 142-184 (450)
371 TIGR02655 circ_KaiC circadian 97.1 0.0061 1.3E-07 58.2 11.3 42 20-61 261-302 (484)
372 PRK13695 putative NTPase; Prov 97.1 0.00097 2.1E-08 54.6 5.1 31 23-53 1-31 (174)
373 PRK14955 DNA polymerase III su 97.1 0.011 2.4E-07 55.0 12.7 28 20-47 36-63 (397)
374 COG2884 FtsE Predicted ATPase 97.1 0.00077 1.7E-08 55.8 4.3 28 20-47 26-53 (223)
375 PRK12422 chromosomal replicati 97.1 0.0059 1.3E-07 57.6 10.9 39 23-61 142-180 (445)
376 COG1855 ATPase (PilT family) [ 97.0 0.00058 1.2E-08 63.2 3.9 29 23-51 264-292 (604)
377 PF01656 CbiA: CobQ/CobB/MinD/ 97.0 0.001 2.2E-08 54.9 5.1 38 24-61 1-38 (195)
378 cd00983 recA RecA is a bacter 97.0 0.0012 2.7E-08 59.5 6.0 40 21-60 54-93 (325)
379 PF02492 cobW: CobW/HypB/UreG, 97.0 0.0011 2.3E-08 54.7 5.2 35 24-59 2-36 (178)
380 PRK05342 clpX ATP-dependent pr 97.0 0.00071 1.5E-08 63.1 4.5 36 22-60 108-143 (412)
381 COG1124 DppF ABC-type dipeptid 97.0 0.00054 1.2E-08 58.7 3.4 41 20-61 31-71 (252)
382 PF13555 AAA_29: P-loop contai 97.0 0.001 2.2E-08 45.0 4.0 25 22-46 23-47 (62)
383 PRK07952 DNA replication prote 97.0 0.00094 2E-08 57.9 4.9 40 23-62 100-139 (244)
384 PRK05896 DNA polymerase III su 97.0 0.031 6.7E-07 54.4 15.7 30 19-48 35-64 (605)
385 PRK10646 ADP-binding protein; 97.0 0.00071 1.5E-08 54.3 3.9 27 20-46 26-52 (153)
386 PRK08099 bifunctional DNA-bind 97.0 0.0023 5.1E-08 59.5 7.9 27 20-46 217-243 (399)
387 PRK12727 flagellar biosynthesi 97.0 0.0011 2.4E-08 63.3 5.7 43 21-63 349-393 (559)
388 cd01393 recA_like RecA is a b 97.0 0.001 2.2E-08 56.6 5.0 41 20-60 17-63 (226)
389 PRK14954 DNA polymerase III su 97.0 0.051 1.1E-06 53.4 17.1 28 20-47 36-63 (620)
390 cd01130 VirB11-like_ATPase Typ 97.0 0.00069 1.5E-08 56.2 3.8 28 20-47 23-50 (186)
391 cd02037 MRP-like MRP (Multiple 97.0 0.0012 2.6E-08 53.7 5.1 39 24-62 2-40 (169)
392 cd02117 NifH_like This family 97.0 0.0012 2.7E-08 55.8 5.3 38 24-61 2-39 (212)
393 PRK09111 DNA polymerase III su 97.0 0.014 3.1E-07 57.0 13.2 30 18-47 42-71 (598)
394 PF07726 AAA_3: ATPase family 97.0 0.00053 1.2E-08 53.3 2.6 22 25-46 2-23 (131)
395 TIGR00382 clpX endopeptidase C 97.0 0.0009 2E-08 62.3 4.7 34 23-59 117-150 (413)
396 PRK14969 DNA polymerase III su 97.0 0.022 4.7E-07 55.0 14.2 29 19-47 35-63 (527)
397 TIGR01241 FtsH_fam ATP-depende 97.0 0.00068 1.5E-08 64.9 3.9 39 19-60 85-123 (495)
398 COG0378 HypB Ni2+-binding GTPa 97.0 0.0016 3.4E-08 54.1 5.4 41 20-61 10-51 (202)
399 PRK06731 flhF flagellar biosyn 97.0 0.01 2.3E-07 52.2 11.0 42 21-62 74-115 (270)
400 TIGR03600 phage_DnaB phage rep 97.0 0.0076 1.7E-07 56.4 10.8 40 20-59 192-232 (421)
401 COG1484 DnaC DNA replication p 97.0 0.0012 2.6E-08 57.6 5.0 43 21-63 104-146 (254)
402 PF13604 AAA_30: AAA domain; P 97.0 0.0015 3.3E-08 54.7 5.5 37 21-57 17-53 (196)
403 cd02032 Bchl_like This family 97.0 0.0014 2.9E-08 57.5 5.3 38 23-60 1-38 (267)
404 cd01128 rho_factor Transcripti 97.0 0.0027 5.8E-08 55.3 7.1 29 20-48 14-42 (249)
405 PRK06995 flhF flagellar biosyn 96.9 0.0014 3E-08 62.2 5.6 42 21-62 255-298 (484)
406 PRK08939 primosomal protein Dn 96.9 0.0017 3.6E-08 58.3 5.9 42 21-62 155-196 (306)
407 PTZ00361 26 proteosome regulat 96.9 0.0012 2.6E-08 62.0 5.1 36 20-58 215-250 (438)
408 cd01121 Sms Sms (bacterial rad 96.9 0.0015 3.3E-08 60.1 5.8 40 21-60 81-120 (372)
409 TIGR03689 pup_AAA proteasome A 96.9 0.0029 6.3E-08 60.5 7.8 27 21-47 215-241 (512)
410 COG3640 CooC CO dehydrogenase 96.9 0.0015 3.2E-08 55.8 5.1 38 23-60 1-39 (255)
411 PTZ00454 26S protease regulato 96.9 0.0011 2.3E-08 61.7 4.7 35 20-57 177-211 (398)
412 TIGR00073 hypB hydrogenase acc 96.9 0.0018 3.9E-08 54.6 5.7 44 16-60 16-59 (207)
413 TIGR00416 sms DNA repair prote 96.9 0.0016 3.5E-08 61.6 5.8 42 20-61 92-133 (454)
414 PHA02244 ATPase-like protein 96.9 0.001 2.2E-08 60.8 4.3 35 20-57 117-151 (383)
415 COG1136 SalX ABC-type antimicr 96.9 0.00084 1.8E-08 57.3 3.5 38 20-58 29-66 (226)
416 COG3911 Predicted ATPase [Gene 96.9 0.00096 2.1E-08 53.0 3.5 23 23-45 10-32 (183)
417 TIGR01242 26Sp45 26S proteasom 96.9 0.0011 2.5E-08 60.8 4.6 27 20-46 154-180 (364)
418 TIGR00101 ureG urease accessor 96.9 0.0015 3.2E-08 54.9 4.9 38 22-60 1-38 (199)
419 cd02036 MinD Bacterial cell di 96.9 0.0018 3.8E-08 52.7 5.2 38 24-61 2-39 (179)
420 PF00308 Bac_DnaA: Bacterial d 96.9 0.01 2.2E-07 50.6 10.1 113 23-140 35-175 (219)
421 PRK06305 DNA polymerase III su 96.9 0.051 1.1E-06 51.4 15.7 29 19-47 36-64 (451)
422 PRK00411 cdc6 cell division co 96.9 0.0015 3.3E-08 60.4 5.3 43 17-59 50-94 (394)
423 TIGR03880 KaiC_arch_3 KaiC dom 96.9 0.0022 4.8E-08 54.6 5.9 40 21-60 15-54 (224)
424 PRK11823 DNA repair protein Ra 96.9 0.0018 4E-08 61.1 5.8 41 21-61 79-119 (446)
425 PRK06851 hypothetical protein; 96.9 0.0017 3.7E-08 59.5 5.3 34 21-54 29-62 (367)
426 PRK09354 recA recombinase A; P 96.9 0.0023 4.9E-08 58.3 6.0 40 21-60 59-98 (349)
427 PF13481 AAA_25: AAA domain; P 96.9 0.0018 4E-08 53.5 5.1 39 21-59 31-79 (193)
428 KOG0730|consensus 96.8 0.0014 3E-08 63.2 4.8 41 20-63 466-506 (693)
429 PF00005 ABC_tran: ABC transpo 96.8 0.00088 1.9E-08 52.2 2.9 41 20-61 9-49 (137)
430 PRK14086 dnaA chromosomal repl 96.8 0.0054 1.2E-07 59.6 8.8 39 23-61 315-355 (617)
431 PF02224 Cytidylate_kin: Cytid 96.8 0.012 2.6E-07 47.4 9.3 65 124-188 82-157 (157)
432 PRK05595 replicative DNA helic 96.8 0.015 3.4E-07 54.8 11.7 40 20-59 199-239 (444)
433 TIGR01287 nifH nitrogenase iro 96.8 0.0019 4E-08 56.9 5.2 37 24-60 2-38 (275)
434 COG1116 TauB ABC-type nitrate/ 96.8 0.0011 2.4E-08 57.1 3.5 40 20-60 27-66 (248)
435 PRK05748 replicative DNA helic 96.8 0.013 2.9E-07 55.3 11.1 40 20-59 201-241 (448)
436 PRK14965 DNA polymerase III su 96.8 0.042 9.1E-07 53.6 14.7 30 18-47 34-63 (576)
437 TIGR01166 cbiO cobalt transpor 96.8 0.0012 2.5E-08 54.8 3.5 27 20-46 16-42 (190)
438 COG1120 FepC ABC-type cobalami 96.8 0.0013 2.7E-08 57.4 3.8 42 20-62 26-67 (258)
439 cd02040 NifH NifH gene encodes 96.8 0.0021 4.6E-08 56.1 5.3 39 23-61 2-40 (270)
440 TIGR00960 3a0501s02 Type II (G 96.8 0.0012 2.5E-08 56.0 3.4 27 20-46 27-53 (216)
441 PRK07133 DNA polymerase III su 96.8 0.032 7E-07 55.4 13.8 28 20-47 38-65 (725)
442 PF01712 dNK: Deoxynucleoside 96.8 0.00042 9.2E-09 55.3 0.7 81 110-190 55-142 (146)
443 CHL00176 ftsH cell division pr 96.8 0.0015 3.3E-08 64.2 4.5 39 20-61 214-252 (638)
444 cd03225 ABC_cobalt_CbiO_domain 96.8 0.0013 2.8E-08 55.4 3.6 27 20-46 25-51 (211)
445 PRK06851 hypothetical protein; 96.8 0.0022 4.7E-08 58.8 5.2 35 22-56 214-248 (367)
446 cd03269 ABC_putative_ATPase Th 96.8 0.0013 2.9E-08 55.4 3.5 27 20-46 24-50 (210)
447 cd03292 ABC_FtsE_transporter F 96.8 0.0013 2.8E-08 55.5 3.5 27 20-46 25-51 (214)
448 COG0802 Predicted ATPase or ki 96.7 0.0015 3.3E-08 51.9 3.6 28 20-47 23-50 (149)
449 TIGR02655 circ_KaiC circadian 96.7 0.016 3.5E-07 55.3 11.2 40 21-60 20-60 (484)
450 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.7 0.0014 3E-08 55.6 3.5 28 20-47 28-55 (218)
451 cd03224 ABC_TM1139_LivF_branch 96.7 0.0014 3.1E-08 55.6 3.6 28 20-47 24-51 (222)
452 TIGR02673 FtsE cell division A 96.7 0.0014 3E-08 55.4 3.5 27 20-46 26-52 (214)
453 PRK13764 ATPase; Provisional 96.7 0.0021 4.6E-08 62.5 5.1 35 22-56 257-291 (602)
454 cd03263 ABC_subfamily_A The AB 96.7 0.0014 3.1E-08 55.5 3.5 27 20-46 26-52 (220)
455 cd03261 ABC_Org_Solvent_Resist 96.7 0.0014 3E-08 56.3 3.5 27 20-46 24-50 (235)
456 PRK14088 dnaA chromosomal repl 96.7 0.016 3.5E-07 54.6 10.9 39 23-61 131-171 (440)
457 PRK05636 replicative DNA helic 96.7 0.016 3.5E-07 55.5 10.9 40 20-59 263-303 (505)
458 cd03259 ABC_Carb_Solutes_like 96.7 0.0015 3.3E-08 55.1 3.5 28 20-47 24-51 (213)
459 PRK14950 DNA polymerase III su 96.7 0.067 1.5E-06 52.4 15.4 29 19-47 35-63 (585)
460 cd03238 ABC_UvrA The excision 96.7 0.0015 3.2E-08 53.9 3.4 24 20-43 19-42 (176)
461 PRK12608 transcription termina 96.7 0.0081 1.8E-07 55.1 8.4 30 20-49 131-160 (380)
462 cd03230 ABC_DR_subfamily_A Thi 96.7 0.0016 3.4E-08 53.3 3.5 27 20-46 24-50 (173)
463 COG1419 FlhF Flagellar GTP-bin 96.7 0.024 5.2E-07 52.3 11.4 45 20-64 201-247 (407)
464 cd03256 ABC_PhnC_transporter A 96.7 0.0015 3.3E-08 56.2 3.5 27 20-46 25-51 (241)
465 cd03260 ABC_PstB_phosphate_tra 96.7 0.0016 3.4E-08 55.6 3.5 27 20-46 24-50 (227)
466 cd03235 ABC_Metallic_Cations A 96.7 0.0014 3.1E-08 55.3 3.2 27 20-46 23-49 (213)
467 COG3839 MalK ABC-type sugar tr 96.7 0.0015 3.2E-08 59.1 3.5 41 20-61 27-67 (338)
468 TIGR02315 ABC_phnC phosphonate 96.7 0.0016 3.4E-08 56.2 3.5 27 20-46 26-52 (243)
469 cd03262 ABC_HisP_GlnQ_permease 96.7 0.0016 3.5E-08 54.9 3.5 27 20-46 24-50 (213)
470 cd03226 ABC_cobalt_CbiO_domain 96.7 0.0016 3.4E-08 54.7 3.4 27 20-46 24-50 (205)
471 cd03293 ABC_NrtD_SsuB_transpor 96.7 0.0015 3.3E-08 55.4 3.3 27 20-46 28-54 (220)
472 cd03219 ABC_Mj1267_LivG_branch 96.7 0.0015 3.3E-08 56.0 3.3 27 20-46 24-50 (236)
473 PRK11629 lolD lipoprotein tran 96.7 0.0016 3.6E-08 55.8 3.5 27 20-46 33-59 (233)
474 PRK13541 cytochrome c biogenes 96.7 0.0017 3.7E-08 54.1 3.5 28 20-47 24-51 (195)
475 PRK08760 replicative DNA helic 96.7 0.015 3.2E-07 55.4 10.2 40 20-59 227-267 (476)
476 TIGR02211 LolD_lipo_ex lipopro 96.7 0.0017 3.7E-08 55.1 3.5 28 20-47 29-56 (221)
477 cd03222 ABC_RNaseL_inhibitor T 96.6 0.0017 3.6E-08 53.6 3.3 75 20-101 23-97 (177)
478 TIGR01243 CDC48 AAA family ATP 96.6 0.002 4.4E-08 64.6 4.5 37 20-59 210-246 (733)
479 PRK13185 chlL protochlorophyll 96.6 0.0038 8.2E-08 54.7 5.7 39 22-60 2-40 (270)
480 cd03223 ABCD_peroxisomal_ALDP 96.6 0.0018 3.9E-08 52.6 3.5 28 20-47 25-52 (166)
481 PRK13341 recombination factor 96.6 0.0023 5.1E-08 63.7 4.9 35 12-46 42-76 (725)
482 PF02374 ArsA_ATPase: Anion-tr 96.6 0.0033 7.1E-08 56.4 5.4 38 23-60 2-39 (305)
483 cd03264 ABC_drug_resistance_li 96.6 0.0016 3.6E-08 54.8 3.2 25 21-46 25-49 (211)
484 PRK09165 replicative DNA helic 96.6 0.017 3.6E-07 55.4 10.5 28 20-47 215-242 (497)
485 COG1219 ClpX ATP-dependent pro 96.6 0.0086 1.9E-07 53.4 7.7 53 23-83 98-150 (408)
486 TIGR03608 L_ocin_972_ABC putat 96.6 0.0018 3.9E-08 54.3 3.4 27 20-46 22-48 (206)
487 cd03258 ABC_MetN_methionine_tr 96.6 0.0018 3.9E-08 55.5 3.5 28 20-47 29-56 (233)
488 cd03265 ABC_DrrA DrrA is the A 96.6 0.0018 4E-08 54.9 3.5 27 20-46 24-50 (220)
489 PRK14970 DNA polymerase III su 96.6 0.049 1.1E-06 50.0 13.2 30 19-48 36-65 (367)
490 PRK08691 DNA polymerase III su 96.6 0.031 6.8E-07 55.1 12.4 29 19-47 35-63 (709)
491 cd03301 ABC_MalK_N The N-termi 96.6 0.0019 4.1E-08 54.5 3.6 40 20-60 24-63 (213)
492 PRK14948 DNA polymerase III su 96.6 0.12 2.7E-06 50.8 16.5 27 21-47 37-63 (620)
493 cd03232 ABC_PDR_domain2 The pl 96.6 0.0018 3.9E-08 53.9 3.4 26 20-45 31-56 (192)
494 COG1123 ATPase components of v 96.6 0.0016 3.5E-08 62.1 3.4 39 20-59 315-353 (539)
495 cd03229 ABC_Class3 This class 96.6 0.002 4.3E-08 53.0 3.5 28 20-47 24-51 (178)
496 TIGR02016 BchX chlorophyllide 96.6 0.0032 6.8E-08 56.3 5.1 37 24-60 2-38 (296)
497 cd03247 ABCC_cytochrome_bd The 96.6 0.002 4.3E-08 52.9 3.5 28 20-47 26-53 (178)
498 TIGR00763 lon ATP-dependent pr 96.6 0.003 6.4E-08 63.8 5.4 35 20-57 345-379 (775)
499 PF00437 T2SE: Type II/IV secr 96.6 0.0026 5.7E-08 55.8 4.4 37 21-57 126-162 (270)
500 PRK08506 replicative DNA helic 96.6 0.028 6E-07 53.6 11.7 40 20-59 190-229 (472)
No 1
>KOG4238|consensus
Probab=100.00 E-value=5e-52 Score=362.68 Aligned_cols=255 Identities=53% Similarity=0.969 Sum_probs=245.7
Q ss_pred cCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeE
Q psy17388 18 EGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIA 97 (272)
Q Consensus 18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~V 97 (272)
.+.++..||++|++|+||||++-+|.+.|...|++++.+|+|++|.++.++++|++++|++.+++++++++.+.++|.++
T Consensus 46 ~gfrgctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~knlgfs~edreenirriaevaklfadaglvc 125 (627)
T KOG4238|consen 46 GGFRGCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLNKNLGFSPEDREENIRRIAEVAKLFADAGLVC 125 (627)
T ss_pred CCccceeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhhhccCCCchhHHHHHHHHHHHHHHHhcCCcee
Confidence 44689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCCCCCcEEEeCCCC
Q psy17388 98 LCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNV 177 (272)
Q Consensus 98 I~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~~~~~~~Idt~~~ 177 (272)
|.++++|+..+|...+++...++++|+.||++++.++|.+|..+.+|+++|.+++.+|+++++.||+|+.|+++++++..
T Consensus 126 itsfispf~~dr~~arkihe~~~l~f~ev~v~a~l~vceqrd~k~lykkaragei~gftgids~ye~pe~~e~vl~t~~~ 205 (627)
T KOG4238|consen 126 ITSFISPFAKDRENARKIHESAGLPFFEVFVDAPLNVCEQRDVKGLYKKARAGEIKGFTGIDSDYEKPETPERVLKTNLS 205 (627)
T ss_pred eehhcChhhhhhhhhhhhhcccCCceEEEEecCchhhhhhcChHHHHhhhhccccccccccccccCCCCChhHHhhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCCCch------hhh-----------hccCCceecCchhHHHHHHHhhccccCccCCCCHHHH
Q psy17388 178 PVEKCANSVLDMIAAKGLIPARQ------FFF-----------IEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEF 240 (272)
Q Consensus 178 ~~ee~~~~I~~~L~~~~~~~~~~------l~~-----------~~~~~~~~~~~~~~~~~~~~~~g~~~pl~gfm~~~~~ 240 (272)
++.+|++++++.|++++++|.+. ||| +.+||.+.|++.+++|+++||+||.+||+|||++.+|
T Consensus 206 ~v~~cvqqvve~lq~~~ivp~~~~~~v~elfv~e~~l~~~~~eae~lp~l~itkvdlqwvqvlaegwatpl~gfmrerey 285 (627)
T KOG4238|consen 206 TVSDCVQQVVELLQEQNIVPYTIIKDVHELFVPENKLDHVRAEAETLPSLSITKVDLQWVQVLAEGWATPLKGFMREREY 285 (627)
T ss_pred hHHHHHHHHHHHHHhcCCChhhhhHHHHHHcCCccHHHHHHhhhccCCcceeeehhHHHHHHHHhhccccchhHHHHHHH
Confidence 99999999999999999999776 454 7889999999999999999999999999999999999
Q ss_pred HhhhhhcccCCC-------CccceeEEEecChhhhhhcC
Q psy17388 241 LKTIHFNTLDSN-------VNQSVAIVLAVTGEDKQRLE 272 (272)
Q Consensus 241 ~~v~~~~~l~~~-------~~~~~pi~l~~~~~~~~~~~ 272 (272)
.+|+|+-.|.|| ...||||||+++.|++.+||
T Consensus 286 lq~mhf~~lld~khaf~g~in~sipivl~~s~e~k~~le 324 (627)
T KOG4238|consen 286 LQVMHFDTLLDGKHAFDGVINMSIPIVLPVSAEDKTRLE 324 (627)
T ss_pred HHHhhhhhhhcccccccccccccccEEEecchhhhhccc
Confidence 999999999987 78999999999999999886
No 2
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.8e-41 Score=267.50 Aligned_cols=188 Identities=48% Similarity=0.853 Sum_probs=178.5
Q ss_pred hcccchhhhhhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHH
Q psy17388 6 NEGKESWLRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAE 85 (272)
Q Consensus 6 ~~~~~~~~r~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~ 85 (272)
++|+++ |..+.+++|.+|||+|+|||||||+|.+|+++|...|++++++|+|++|.++..+++|+.++|.++++++++
T Consensus 9 ~v~~~~--r~~~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvae 86 (197)
T COG0529 9 SVTKQE--REALKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAE 86 (197)
T ss_pred ccCHHH--HHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHHH
Confidence 455555 588888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCC
Q psy17388 86 CAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAP 165 (272)
Q Consensus 86 ~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~ 165 (272)
+++.+.++|.+||+++++|++..|+..|+++... .|+.||++||.++|.+|..|++|++++.+++++|++++..||+|
T Consensus 87 vAkll~daG~iviva~ISP~r~~R~~aR~~~~~~--~FiEVyV~~pl~vce~RDpKGLYkKAr~GeI~~fTGid~pYE~P 164 (197)
T COG0529 87 VAKLLADAGLIVIVAFISPYREDRQMARELLGEG--EFIEVYVDTPLEVCERRDPKGLYKKARAGEIKNFTGIDSPYEAP 164 (197)
T ss_pred HHHHHHHCCeEEEEEeeCccHHHHHHHHHHhCcC--ceEEEEeCCCHHHHHhcCchHHHHHHHcCCCCCCcCCCCCCCCC
Confidence 9999999999999999999999999999988653 79999999999999999999999999999999999999999999
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCC
Q psy17388 166 KNPDLILETVNVPVEKCANSVLDMIAAKGLIP 197 (272)
Q Consensus 166 ~~~~~~Idt~~~~~ee~~~~I~~~L~~~~~~~ 197 (272)
.+|++++||+..++++++++|+..|..++++.
T Consensus 165 ~~Pel~l~t~~~~vee~v~~i~~~l~~~~~~~ 196 (197)
T COG0529 165 ENPELHLDTDRNSVEECVEQILDLLKERKIIK 196 (197)
T ss_pred CCCeeEeccccCCHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999988764
No 3
>KOG0635|consensus
Probab=100.00 E-value=2.7e-35 Score=229.39 Aligned_cols=190 Identities=42% Similarity=0.735 Sum_probs=177.6
Q ss_pred hhhcccchhhhhhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHH
Q psy17388 4 ECNEGKESWLRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRA 83 (272)
Q Consensus 4 ~~~~~~~~~~r~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i 83 (272)
++++|++++ ..+.++++.+|||+|++||||||+|-+|.+.|..+|.-.+.+|+|++|.+++.+++|..++|.+.++++
T Consensus 15 ~~~v~k~eR--q~l~~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~F~a~dR~ENIRRi 92 (207)
T KOG0635|consen 15 ESSVTKEER--QKLLKQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGFKAEDRNENIRRI 92 (207)
T ss_pred cCCccHHHH--HHHhcCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccccCcchhhhhhhHHHH
Confidence 678888885 566779999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCC
Q psy17388 84 AECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYE 163 (272)
Q Consensus 84 ~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye 163 (272)
.++++.++++|.+.|++.++|++.+|+..|.++++. +|+.||+++|.+++.+|..+++|+.+|.+.+++|++++.+||
T Consensus 93 geVaKLFADag~iciaSlISPYR~dRdacRel~~~~--~FiEvfmdvpl~vcE~RDPKGLYK~ARaGkIKgFTGIddPYE 170 (207)
T KOG0635|consen 93 GEVAKLFADAGVICIASLISPYRKDRDACRELLPEG--DFIEVFMDVPLEVCEARDPKGLYKLARAGKIKGFTGIDDPYE 170 (207)
T ss_pred HHHHHHHhccceeeeehhcCchhccHHHHHHhccCC--CeEEEEecCcHHHhhccCchhHHHHHhcccccccccCCCccc
Confidence 999999999999999999999999999999998864 899999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEeCCC-CCHHHHHHHHHHHHHhCCCCC
Q psy17388 164 APKNPDLILETVN-VPVEKCANSVLDMIAAKGLIP 197 (272)
Q Consensus 164 ~~~~~~~~Idt~~-~~~ee~~~~I~~~L~~~~~~~ 197 (272)
.|-++++++-+.. .+++++++.|+.+|..+|++.
T Consensus 171 aP~~cEi~l~~~~~~sp~~mae~iv~YL~~kg~l~ 205 (207)
T KOG0635|consen 171 APLNCEIVLKSHESSSPEEMAEIIVSYLDNKGYLQ 205 (207)
T ss_pred CCCCcEEEEccCCCCCHHHHHHHHHHHHhhcChhc
Confidence 9999999987654 457779999999999999874
No 4
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=100.00 E-value=2.1e-33 Score=225.12 Aligned_cols=155 Identities=51% Similarity=0.899 Sum_probs=134.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIALCS 100 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI~d 100 (272)
+|.+|||+|.|||||||+|++|.++|...|++++++|+|.++..+..+++|+.++|.++++++.++++.+.++|.+||++
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~~G~ivIva 80 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLADQGIIVIVA 80 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCCCCCcEEEeCCCC
Q psy17388 101 FVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNV 177 (272)
Q Consensus 101 ~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~~~~~~~Idt~~~ 177 (272)
.++|+...|+.+++.+... +|+.|||+||.++|.+|..|++|.+++.++++++.+++..||+|.+|+++|||+..
T Consensus 81 ~isp~~~~R~~~R~~~~~~--~f~eVyv~~~~e~~~~RD~KglY~ka~~g~i~~~~Gvd~~ye~P~~pdl~idt~~~ 155 (156)
T PF01583_consen 81 FISPYREDREWARELIPNE--RFIEVYVDCPLEVCRKRDPKGLYAKARAGEIKNFTGVDDPYEEPLNPDLVIDTDKE 155 (156)
T ss_dssp ----SHHHHHHHHHHHHTT--EEEEEEEES-HHHHHHHTTTSHHHHHHTTSSSSHTTTSS-----SS-SEEEETTTS
T ss_pred eccCchHHHHHHHHhCCcC--ceEEEEeCCCHHHHHHhCchhHHHHhhCCCcCCccccccCCCCCCCCeEEEeCCCC
Confidence 9999999999999998754 78999999999999999999999999999999999999999999999999999864
No 5
>PRK03846 adenylylsulfate kinase; Provisional
Probab=99.94 E-value=1.2e-25 Score=189.03 Aligned_cols=181 Identities=43% Similarity=0.786 Sum_probs=153.7
Q ss_pred hhhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhC
Q psy17388 14 RDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAEC 93 (272)
Q Consensus 14 r~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 93 (272)
|+.+.+++|.+|+|+|.+||||||+++.|+..+...|.+++++|+|.++..+....++..+++..+++++...+..+...
T Consensus 16 ~~~~~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ 95 (198)
T PRK03846 16 REQLHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVAKLMVDA 95 (198)
T ss_pred HHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhcCCcCcccHHHHHHHHHHHHHHHhhC
Confidence 56778889999999999999999999999999987788899999999987666566777778888888888888888899
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCCCCCcEEEe
Q psy17388 94 GFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILE 173 (272)
Q Consensus 94 g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~~~~~~~Id 173 (272)
|.+||+++.++...+|+.+++++... .+++|||+||.+++.+|..++++.+.+.+++..+...+..|++|..++++||
T Consensus 96 G~~VI~~~~~~~~~~R~~~r~~l~~~--~~i~V~L~~~~e~~~~R~~r~l~~~~~~~~~~~l~~~r~~Y~~p~~ad~~Id 173 (198)
T PRK03846 96 GLVVLTAFISPHRAERQMVRERLGEG--EFIEVFVDTPLAICEARDPKGLYKKARAGEIRNFTGIDSVYEAPESPEIHLD 173 (198)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHcccC--CEEEEEEcCCHHHHHhcCchhHHHHhhcCCccCcccccccCCCCCCCCEEEE
Confidence 99999998888889999999988765 4667999999999999966445554544555666667777998888899999
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCC
Q psy17388 174 TVNVPVEKCANSVLDMIAAKGLI 196 (272)
Q Consensus 174 t~~~~~ee~~~~I~~~L~~~~~~ 196 (272)
|+..++++++++|++.|...+++
T Consensus 174 t~~~~~~~vv~~Il~~l~~~~~~ 196 (198)
T PRK03846 174 TGEQLVTNLVEQLLDYLRQRDII 196 (198)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999987754
No 6
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=99.94 E-value=6.1e-25 Score=182.66 Aligned_cols=175 Identities=47% Similarity=0.866 Sum_probs=152.4
Q ss_pred hhhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhC
Q psy17388 14 RDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAEC 93 (272)
Q Consensus 14 r~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 93 (272)
|+++..++|.+|+|+|+|||||||+++.|+..+...|+++.++++|.++..+..+.+|...++..+++.+..++..++.+
T Consensus 10 ~~~~~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (184)
T TIGR00455 10 RQALNGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKDLGFSEEDRKENIRRIGEVAKLFVRN 89 (184)
T ss_pred HHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 55667788999999999999999999999999987777888999999998877777888888888888888888889999
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCCCCCcEEEe
Q psy17388 94 GFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILE 173 (272)
Q Consensus 94 g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~~~~~~~Id 173 (272)
|.+||++++++...+|+.++.++... ++++|||+||.+++.+|..++++...+.+++..+.+.+..|+.|..++++||
T Consensus 90 G~~VI~d~~~~~~~~r~~~~~~~~~~--~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~l~~~~~~y~~p~~adl~Id 167 (184)
T TIGR00455 90 GIIVITSFISPYRADRQMVRELIEKG--EFIEVFVDCPLEVCEQRDPKGLYKKARNGEIKGFTGIDSPYEAPENPEVVLD 167 (184)
T ss_pred CCEEEEecCCCCHHHHHHHHHhCcCC--CeEEEEEeCCHHHHHHhCchhHHHHHhcCCccCcccccCCCCCCCCCcEEEE
Confidence 99999999999999999998887654 7889999999999999976666666666677777777888998888999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q psy17388 174 TVNVPVEKCANSVLDMI 190 (272)
Q Consensus 174 t~~~~~ee~~~~I~~~L 190 (272)
|+..++++++++|++.|
T Consensus 168 t~~~~~~~~~~~i~~~l 184 (184)
T TIGR00455 168 TDQNDREECVGQIIEKL 184 (184)
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 99999999999998754
No 7
>PF14306 PUA_2: PUA-like domain; PDB: 1M8P_C 1I2D_B 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2OFX_B 1J70_B 1G8F_A ....
Probab=99.94 E-value=2.9e-27 Score=190.45 Aligned_cols=68 Identities=31% Similarity=0.495 Sum_probs=57.0
Q ss_pred hccCCceecCchhHHHHHHHhhccccCccCCCCHHHHHhhhhhcccCCCCccceeEEEecChhhhhhc
Q psy17388 204 IEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVTGEDKQRL 271 (272)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~g~~~pl~gfm~~~~~~~v~~~~~l~~~~~~~~pi~l~~~~~~~~~~ 271 (272)
+..+|+|.|+.+++||+++|++|+||||+|||+++||+||+++|||+||++|||||||+|+++.++.|
T Consensus 26 a~~lp~i~l~~~~~~dleli~~G~fsPL~GFM~~~dy~~V~~~~rL~~G~~wpiPI~L~v~~e~~~~l 93 (160)
T PF14306_consen 26 AESLPSIELSKRQLCDLELIANGAFSPLTGFMNEEDYESVLETMRLPDGTLWPIPIVLDVSEEEAKSL 93 (160)
T ss_dssp HTTSEEEEE-HHHHHHHHHHHTTTTTT-SEE--HHHHHHHHHHSBETTSSB--S---EEECHHHHTTC
T ss_pred HhhCCeEEeCHHHHHHHHHHhcCCCCCCccccCHHHHHHHHhhCCcCCCCEEeEEEEEECCHHHHHhc
Confidence 67899999999999999999999999999999999999999999999999999999999999998875
No 8
>PRK00889 adenylylsulfate kinase; Provisional
Probab=99.93 E-value=8.8e-24 Score=174.25 Aligned_cols=173 Identities=42% Similarity=0.712 Sum_probs=141.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEE
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIALC 99 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI~ 99 (272)
++|.+|+|+|+|||||||+|+.|+..+...|.++.++|+|.+++.+..+.++..+++..+++.+..++..+...|.+|++
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~~~~~~~~~~r~~~~~~~~~~a~~~~~~g~~vi~ 81 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSKGLGFSKEDRDTNIRRIGFVANLLTRHGVIVLV 81 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 67889999999999999999999999987787889999999988776666777778888888887777777788999999
Q ss_pred cCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCCCCCcEEEeCCCCCH
Q psy17388 100 SFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPV 179 (272)
Q Consensus 100 d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~~~~~~~Idt~~~~~ 179 (272)
+.++++...++.++... ..+.+|||+||.+++.+|..+.++.+.+.+++..+...+..|..|..++++|++++.++
T Consensus 82 ~~~~~~~~~~~~l~~~~----~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~i~~~~~~~~~~~~p~~ad~~i~~~~~~~ 157 (175)
T PRK00889 82 SAISPYRETREEVRANI----GNFLEVFVDAPLEVCEQRDVKGLYAKARAGEIKHFTGIDDPYEPPLNPEVECRTDLESL 157 (175)
T ss_pred ecCCCCHHHHHHHHhhc----CCeEEEEEcCCHHHHHHhCcccHHHHHHcCCCCCCcccCCCCCCCCCCcEEEECCCCCH
Confidence 88887767777666553 25788999999999999975545555555556555555666666667889999999999
Q ss_pred HHHHHHHHHHHHhCCCC
Q psy17388 180 EKCANSVLDMIAAKGLI 196 (272)
Q Consensus 180 ee~~~~I~~~L~~~~~~ 196 (272)
++++++|++.|...+++
T Consensus 158 ~~~~~~i~~~l~~~~~~ 174 (175)
T PRK00889 158 EESVDKVLQKLEELGYL 174 (175)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999999887764
No 9
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=99.92 E-value=1.1e-23 Score=201.56 Aligned_cols=176 Identities=44% Similarity=0.757 Sum_probs=154.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHH-cCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEE
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIA-QGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIAL 98 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~-~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI 98 (272)
++|.+|+|+|+|||||||+|++|+++|.. .|.++.++|+|.++..+..+..|+..++..+++++...+..+++.|.+||
T Consensus 390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~ge~~f~~~er~~~~~~l~~~a~~v~~~Gg~vI 469 (568)
T PRK05537 390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSSELGFSKEDRDLNILRIGFVASEITKNGGIAI 469 (568)
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 56889999999999999999999999975 56678999999999888878889999998888888888888889999999
Q ss_pred EcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCCCCCcEEEeCCCCC
Q psy17388 99 CSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVP 178 (272)
Q Consensus 99 ~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~~~~~~~Idt~~~~ 178 (272)
++.++++...|+.++++++..| .+++|||++|.+++.+|+.++++.+.+.+.++.+...+..|+.|..++++|||+..+
T Consensus 470 ~~~~~p~~~~R~~nr~llk~~g-~fivV~L~~p~e~l~~R~rr~Ll~~~~~~~i~~l~~~R~~yy~p~~Adl~IDt~~~s 548 (568)
T PRK05537 470 CAPIAPYRATRREVREMIEAYG-GFIEVHVATPLEVCEQRDRKGLYAKAREGKIKGFTGISDPYEPPANPELVIDTTNVT 548 (568)
T ss_pred EEeCCchHHHHHHHHHHHhhcC-CEEEEEEcCCHHHHHHhccccccccchhchhhccccccccccCCCCCcEEEECCCCC
Confidence 9999999999999999998766 577899999999999998766665555556666666777888887889999999999
Q ss_pred HHHHHHHHHHHHHhCCCC
Q psy17388 179 VEKCANSVLDMIAAKGLI 196 (272)
Q Consensus 179 ~ee~~~~I~~~L~~~~~~ 196 (272)
+++++++|++.|.+.|++
T Consensus 549 ~~eiv~~Il~~L~~~g~~ 566 (568)
T PRK05537 549 PDECAHKILLYLEEKGYL 566 (568)
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 999999999999998865
No 10
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.91 E-value=5.9e-23 Score=200.18 Aligned_cols=181 Identities=49% Similarity=0.846 Sum_probs=158.0
Q ss_pred hhhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhC
Q psy17388 14 RDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAEC 93 (272)
Q Consensus 14 r~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 93 (272)
|....+++|.+|+++|+|||||||+|++|+++|...|.++.++|+|.++..+..+.+|+.+++..+++++..++..++++
T Consensus 452 ~~~~~~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~~~~~~~~~r~~~~~~l~~~a~~~~~~ 531 (632)
T PRK05506 452 RAARKGQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRDLGFSDADRVENIRRVAEVARLMADA 531 (632)
T ss_pred HHHHhCCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 33455667999999999999999999999999987788899999999999887777899999999999998889999999
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCCCCCcEEEe
Q psy17388 94 GFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILE 173 (272)
Q Consensus 94 g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~~~~~~~Id 173 (272)
|.+||+|++++++..|+.+++++... ++++|||++|.+++.+|..++++...+.+++..+...+.+|++|..++++||
T Consensus 532 G~~Vivda~~~~~~~R~~~r~l~~~~--~~~~v~L~~~~e~~~~R~~r~L~~~~~~~~l~~l~~~r~~y~~P~~a~~~Id 609 (632)
T PRK05506 532 GLIVLVSFISPFREERELARALHGEG--EFVEVFVDTPLEVCEARDPKGLYAKARAGEIKNFTGIDSPYEAPENPELRLD 609 (632)
T ss_pred CCEEEEECCCCCHHHHHHHHHhcccC--CeEEEEECCCHHHHHhhCCcchhhhccccccccccccccCCCCCCCCeEEEe
Confidence 99999999999889999888877543 6788999999999999986667766666677777778888998888899999
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCC
Q psy17388 174 TVNVPVEKCANSVLDMIAAKGLI 196 (272)
Q Consensus 174 t~~~~~ee~~~~I~~~L~~~~~~ 196 (272)
++..++++++++|++.|...+++
T Consensus 610 ~~~~s~~e~v~~Ii~~l~~~~~~ 632 (632)
T PRK05506 610 TTGRSPEELAEQVLELLRRRGAI 632 (632)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCC
Confidence 98899999999999999886653
No 11
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=99.89 E-value=3e-22 Score=161.02 Aligned_cols=149 Identities=54% Similarity=0.971 Sum_probs=131.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEcCCC
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIALCSFVS 103 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI~d~~~ 103 (272)
+|+|+|.|||||||+|+.|++.+...|+++.+++.|.++..+....+++.+.+.+.++.+...++.+.++|.+||+|..+
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~~VIid~~~ 80 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLGFSREDREENIRRIAEVAKLLADAGLIVIAAFIS 80 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCEEEEccCC
Confidence 48999999999999999999999777878889999999887766667777777777887777788888899999999998
Q ss_pred CcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCCCCCcEEEeC
Q psy17388 104 PTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILET 174 (272)
Q Consensus 104 ~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~~~~~~~Idt 174 (272)
.+...|..++.+++ +.++..||+++|.+++.+|..+..|.+.+.+++.+..++...|+.|..+++++|+
T Consensus 81 ~~~~~R~~~~~l~~--~~~~~~i~l~~~~e~~~~R~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (149)
T cd02027 81 PYREDREAARKIIG--GGDFLEVFVDTPLEVCEQRDPKGLYKKARAGEIKGFTGIDDPYEAPENPDLVLDT 149 (149)
T ss_pred CCHHHHHHHHHhcC--CCCEEEEEEeCCHHHHHHhCchhhHHHHhCCCCCCccccCCCCCCCCCCeeEecC
Confidence 88888988888775 6789999999999999999999999999999999998999999988888998875
No 12
>PRK04149 sat sulfate adenylyltransferase; Reviewed
Probab=99.88 E-value=4.4e-23 Score=187.77 Aligned_cols=68 Identities=31% Similarity=0.453 Sum_probs=65.7
Q ss_pred hccCCceecCchhHHHHHHHhhccccCccCCCCHHHHHhhhhhcccCCCCccceeEEEecChhhhhhc
Q psy17388 204 IEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVTGEDKQRL 271 (272)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~g~~~pl~gfm~~~~~~~v~~~~~l~~~~~~~~pi~l~~~~~~~~~~ 271 (272)
+.+||++.|++++++||++|++||||||+|||+++||+||+++|||+||++|||||||+|++++++.|
T Consensus 28 a~~lp~i~i~~~~l~dLell~~G~fsPL~GFM~~~d~~sV~~~~rL~~G~~wpiPi~L~v~~e~~~~l 95 (391)
T PRK04149 28 AESLPRIELDERAASDLEMIAIGGFSPLTGFMGREDYDSVVEEMRLANGLVWSIPITLDVSEEDAASL 95 (391)
T ss_pred hccCCEEecCHHHHHHHHHHhcCCccCcccCCCHHHHHHHHHhCcCCCCCCcceeEEEeCCHHHHhhC
Confidence 67799999999999999999999999999999999999999999999999999999999999988876
No 13
>cd00517 ATPS ATP-sulfurylase. ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be
Probab=99.87 E-value=1e-22 Score=183.54 Aligned_cols=65 Identities=37% Similarity=0.542 Sum_probs=63.1
Q ss_pred CCceecCchhHHHHHHHhhccccCccCCCCHHHHHhhhhhcccCCCCccceeEEEecChhhhhhc
Q psy17388 207 LPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVTGEDKQRL 271 (272)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~g~~~pl~gfm~~~~~~~v~~~~~l~~~~~~~~pi~l~~~~~~~~~~ 271 (272)
||++.|++++++||++|++|+||||+|||+++||+||+++|||+||++|||||||+|++++++.|
T Consensus 1 lp~i~i~~~~~~dlell~~G~fsPL~GFM~~~d~~~V~~~~rL~~G~~wpiPi~L~v~~e~~~~l 65 (353)
T cd00517 1 LPSVELSERDLCDLEMLAEGGFSPLTGFMTEADYLSVLEEMRLLDGTLWPIPIVLDVSEEDAKRL 65 (353)
T ss_pred CCeEEcCHHHHHHHHHHhcCCccCCccCCCHHHHHHHHHhCcCCCCCCcCeEEEEeCCHHHHhhc
Confidence 69999999999999999999999999999999999999999999999999999999999988765
No 14
>TIGR00339 sopT ATP sulphurylase. Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.
Probab=99.87 E-value=1.1e-22 Score=185.25 Aligned_cols=68 Identities=29% Similarity=0.449 Sum_probs=65.7
Q ss_pred hccCCceecCchhHHHHHHHhhccccCccCCCCHHHHHhhhhhcccCCCCccceeEEEecChhhhhhc
Q psy17388 204 IEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVTGEDKQRL 271 (272)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~g~~~pl~gfm~~~~~~~v~~~~~l~~~~~~~~pi~l~~~~~~~~~~ 271 (272)
+.+||++.|+.+++|||++|++|+||||+|||+++||+||+++|||+||++|||||||+|+++.++.|
T Consensus 24 a~~lp~i~i~~~~l~dlell~~G~fsPL~GfM~~~d~~~V~~~~rL~~G~~wpiPi~L~v~~e~~~~l 91 (383)
T TIGR00339 24 AESLPSITLSDRQLCDLELLGNGAFSPLEGFMNEADYDSVVEDMRLSDGVLFSVPITLDIDDEDADDI 91 (383)
T ss_pred hccCCEEecCHHHHHHHHHHhcCCccCccccCCHHHHHHHHHhCcCCCCCCcceeEEEeCCHHHHhhC
Confidence 67799999999999999999999999999999999999999999999999999999999999988865
No 15
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=99.87 E-value=9.5e-23 Score=179.55 Aligned_cols=71 Identities=28% Similarity=0.433 Sum_probs=66.7
Q ss_pred hhhhccCCceecCchhHHHHHHHhhccccCccCCCCHHHHHhhhhhcccCCCCccceeEEEecChhhhhhc
Q psy17388 201 FFFIEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVTGEDKQRL 271 (272)
Q Consensus 201 l~~~~~~~~~~~~~~~~~~~~~~~~g~~~pl~gfm~~~~~~~v~~~~~l~~~~~~~~pi~l~~~~~~~~~~ 271 (272)
.-.+..+|+|+|+.+.++|+++|++|+||||+|||+++||+|||++|||+||++|||||+|||+++.+..+
T Consensus 22 ~~~~~~~~~ield~~~~~dl~lIa~G~fSPl~GFMne~dy~sVv~~mRL~~G~~w~iPItl~v~e~~a~~~ 92 (397)
T COG2046 22 MKSIRKLPRIELDQNSFGDLELIAYGAFSPLTGFMNEKDYESVVESMRLANGTLWPIPITLDVSEEEAEEL 92 (397)
T ss_pred HHHhccCceEEEchhhHHHHHHHHccCCCcccccccHHHHHHHHHhccccCCCeeeeeeEecCchHhhhcc
Confidence 33477899999999999999999999999999999999999999999999999999999999999887765
No 16
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.86 E-value=3.5e-20 Score=152.89 Aligned_cols=168 Identities=27% Similarity=0.457 Sum_probs=121.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEE
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIALC 99 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI~ 99 (272)
++|.+|+|+|+|||||||+|+.|++.|...+..++++|+|.+++.+. ..++....+.+...+...+...+...|.+||+
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~g~~VI~ 83 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILG-HYGYDKQSRIEMALKRAKLAKFLADQGMIVIV 83 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 57889999999999999999999999976667788999999877543 23455444444444444555556678889999
Q ss_pred cCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCCCCCcEEEeCCC-CC
Q psy17388 100 SFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVN-VP 178 (272)
Q Consensus 100 d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~~~~~~~Idt~~-~~ 178 (272)
++++++...+...+... .++++|||+||++++.+|+.++.+.......+..+...+..+..+ .++++|+|++ .+
T Consensus 84 ~~~~~~~~~~~~~~~~~----~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~~~~~~~~~~~~-~Ad~vI~~~~~~~ 158 (176)
T PRK05541 84 TTISMFDEIYAYNRKHL----PNYFEVYLKCDMEELIRRDQKGLYTKALKGEIKNVVGVDIPFDEP-KADLVIDNSCRTS 158 (176)
T ss_pred EeCCcHHHHHHHHHhhc----CCeEEEEEeCCHHHHHHhchhhHHHHHHcCcccccccCCCcccCC-CCCEEEeCCCCCC
Confidence 98876544555554443 346789999999999999976655444334444443334344433 3689999986 59
Q ss_pred HHHHHHHHHHHHHhC
Q psy17388 179 VEKCANSVLDMIAAK 193 (272)
Q Consensus 179 ~ee~~~~I~~~L~~~ 193 (272)
+++++++|.+.+.++
T Consensus 159 ~~~~v~~i~~~l~~~ 173 (176)
T PRK05541 159 LDEKVDLILNKLKLR 173 (176)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998765
No 17
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=99.84 E-value=1.6e-21 Score=186.78 Aligned_cols=68 Identities=25% Similarity=0.336 Sum_probs=65.9
Q ss_pred hccCCceecCchhHHHHHHHhhccccCccCCCCHHHHHhhhhhcccCCCCccceeEEEecChhhhhhc
Q psy17388 204 IEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVTGEDKQRL 271 (272)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~g~~~pl~gfm~~~~~~~v~~~~~l~~~~~~~~pi~l~~~~~~~~~~ 271 (272)
+.+||++.|++++++||++|++||||||+|||+++||+||+++|||+||++|||||||+|+++.++.|
T Consensus 26 a~~lp~i~i~~~~~~dlell~~G~~sPL~GfM~~~d~~~V~~~~~l~~G~~wpiPi~L~v~~~~~~~l 93 (568)
T PRK05537 26 ALSLPSLDLSPRQICDLELLMNGGFSPLKGFMGRADYECVLENMRLADGTLWPIPITLDVSEKFAAGL 93 (568)
T ss_pred hccCCEEecCHHHHHHHHHHhcCCccCccccCCHHHHHHHHHhCcCCCCCCcceeEEEeCCHHHHhhC
Confidence 67899999999999999999999999999999999999999999999999999999999999988876
No 18
>PRK06762 hypothetical protein; Provisional
Probab=99.83 E-value=1.7e-19 Score=147.35 Aligned_cols=160 Identities=13% Similarity=0.069 Sum_probs=114.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIALCS 100 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI~d 100 (272)
.|.+|+|+|+|||||||+|+.|++.+ +.++.+++.|.++..+........ ......+...++..++.|..||++
T Consensus 1 m~~li~i~G~~GsGKST~A~~L~~~l---~~~~~~i~~D~~r~~l~~~~~~~~---~~~~~~~~~~~~~~~~~g~~vild 74 (166)
T PRK06762 1 MTTLIIIRGNSGSGKTTIAKQLQERL---GRGTLLVSQDVVRRDMLRVKDGPG---NLSIDLIEQLVRYGLGHCEFVILE 74 (166)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh---CCCeEEecHHHHHHHhccccCCCC---CcCHHHHHHHHHHHHhCCCEEEEc
Confidence 36899999999999999999999998 456888999999875543211100 011223334455567788889888
Q ss_pred CCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccC---CCCCCCcEEEeCCCC
Q psy17388 101 FVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPY---EAPKNPDLILETVNV 177 (272)
Q Consensus 101 ~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~y---e~~~~~~~~Idt~~~ 177 (272)
.......+++.++.+.+..+.++..|||++|.+++.+|+.+|... +...-..++..| +.+..++.+++|++.
T Consensus 75 ~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 149 (166)
T PRK06762 75 GILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKS-----HEFGEDDMRRWWNPHDTLGVIGETIFTDNL 149 (166)
T ss_pred hhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhccccc-----ccCCHHHHHHHHhhcCCcCCCCeEEecCCC
Confidence 876655677778888888888999999999999999999766321 101111233333 333446789999999
Q ss_pred CHHHHHHHHHHHHH
Q psy17388 178 PVEKCANSVLDMIA 191 (272)
Q Consensus 178 ~~ee~~~~I~~~L~ 191 (272)
++++++++|+..+.
T Consensus 150 ~~~~v~~~i~~~~~ 163 (166)
T PRK06762 150 SLKDIFDAILTDIG 163 (166)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999998875
No 19
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.82 E-value=3.8e-19 Score=146.68 Aligned_cols=158 Identities=21% Similarity=0.225 Sum_probs=108.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc-------cCCCCH-------HHHHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA-------NLAFSE-------EDRNENVRRAAEC 86 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~-------~~~~~~-------~~~~~~~~~i~~~ 86 (272)
++++|+|+|+|||||||+|++|++.+ +..+++++.|.++..+.. ...+.. ......+..+...
T Consensus 1 ~~~~i~l~G~~gsGKst~a~~l~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 77 (175)
T cd00227 1 TGRIIILNGGSSAGKSSIARALQSVL---AEPWLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYEA 77 (175)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh---CCCccccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHHH
Confidence 35799999999999999999999998 334566788877654321 011111 1112334445566
Q ss_pred HHHHHhCCCeEEEcCCCC-cHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccc-cccCCC
Q psy17388 87 AKMFAECGFIALCSFVSP-TAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGV-SQPYEA 164 (272)
Q Consensus 87 ~~~~~~~g~~VI~d~~~~-~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~-~~~ye~ 164 (272)
+..++++|.+||+|.... ....++.++.+ .+.+++.||++||.+++.+|+.+|. .....+... ...+..
T Consensus 78 ~~~~l~~G~~VIvD~~~~~~~~~r~~~~~~---~~~~~~~v~l~~~~~~l~~R~~~R~------~~~~~~~~~~~~~~~~ 148 (175)
T cd00227 78 VAAMARAGANVIADDVFLGRAALQDCWRSF---VGLDVLWVGVRCPGEVAEGRETARG------DRVPGQARKQARVVHA 148 (175)
T ss_pred HHHHHhCCCcEEEeeeccCCHHHHHHHHHh---cCCCEEEEEEECCHHHHHHHHHhcC------CccchHHHHHHHHhcC
Confidence 777889999999997665 44555655544 3567899999999999999996552 112222111 122334
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHHHH
Q psy17388 165 PKNPDLILETVNVPVEKCANSVLDMI 190 (272)
Q Consensus 165 ~~~~~~~Idt~~~~~ee~~~~I~~~L 190 (272)
|..++++|||+..+++|++++|++.|
T Consensus 149 ~~~~dl~iDts~~s~~e~a~~i~~~l 174 (175)
T cd00227 149 GVEYDLEVDTTHKTPIECARAIAARV 174 (175)
T ss_pred CCcceEEEECCCCCHHHHHHHHHHhc
Confidence 55678999999999999999999876
No 20
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=99.79 E-value=2.6e-18 Score=140.83 Aligned_cols=157 Identities=20% Similarity=0.207 Sum_probs=101.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc-----cCCCC--------HHHHHHHHHHHHHHHH
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA-----NLAFS--------EEDRNENVRRAAECAK 88 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~-----~~~~~--------~~~~~~~~~~i~~~~~ 88 (272)
+.+|+|+|+|.|||||+|++|.+.+ ..++.++..|.+...+.. ..++. .......+..+...++
T Consensus 1 g~iI~LNG~sSSGKSsia~~Lq~~~---~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ia 77 (174)
T PF07931_consen 1 GQIIILNGPSSSGKSSIARALQERL---PEPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAAIA 77 (174)
T ss_dssp --EEEEEE-TTSSHHHHHHHHHHHS---SS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHhC---cCCeEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHHHHH
Confidence 4689999999999999999999998 457889999988775432 11221 1233445555667788
Q ss_pred HHHhCCCeEEEcCCCCcHH-HHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCC---C
Q psy17388 89 MFAECGFIALCSFVSPTAA-ARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYE---A 164 (272)
Q Consensus 89 ~~~~~g~~VI~d~~~~~~~-~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye---~ 164 (272)
.+.++|..||+|.+..... ..+.+++++. |.+++.|-+.||.+++.+|... |..+..++.. .+|+ .
T Consensus 78 a~a~aG~~VIvD~v~~~~~~l~d~l~~~L~--~~~vl~VgV~Cpleil~~RE~~------RgDR~~G~a~--~q~~~Vh~ 147 (174)
T PF07931_consen 78 AMARAGNNVIVDDVFLGPRWLQDCLRRLLA--GLPVLFVGVRCPLEILERRERA------RGDRPIGLAA--WQAEHVHE 147 (174)
T ss_dssp HHHHTT-EEEEEE--TTTHHHHHHHHHHHT--TS-EEEEEEE--HHHHHHHHHH------HTSSSTTHHH--HHTTGGGT
T ss_pred HHHhCCCCEEEecCccCcHHHHHHHHHHhC--CCceEEEEEECCHHHHHHHHHh------cCCcchHHHH--HHHhhccc
Confidence 8999999999886543334 3566666665 6688999999999999999743 3333333211 1222 2
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHHHHH
Q psy17388 165 PKNPDLILETVNVPVEKCANSVLDMIA 191 (272)
Q Consensus 165 ~~~~~~~Idt~~~~~ee~~~~I~~~L~ 191 (272)
....|+.|||+..+++||+++|+++++
T Consensus 148 ~~~YDleVDTs~~sp~ecA~~I~~~~~ 174 (174)
T PF07931_consen 148 GGRYDLEVDTSATSPEECAREILARLE 174 (174)
T ss_dssp T---SEEEETTSS-HHHHHHHHHTT--
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHhC
Confidence 345789999999999999999998764
No 21
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.78 E-value=1.9e-18 Score=135.00 Aligned_cols=150 Identities=21% Similarity=0.345 Sum_probs=117.8
Q ss_pred EcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccc-----ccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEcCC
Q psy17388 28 PGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNG-----INANLAFSEEDRNENVRRAAECAKMFAECGFIALCSFV 102 (272)
Q Consensus 28 ~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~-----l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI~d~~ 102 (272)
.|.+||||||++.+|+++| ++.|+|+|.+... +..+.+.++++|..|++++...+....+.+..+|+.+.
T Consensus 1 MGVsG~GKStvg~~lA~~l-----g~~fidGDdlHp~aNi~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~vi~CS 75 (161)
T COG3265 1 MGVSGSGKSTVGSALAERL-----GAKFIDGDDLHPPANIEKMSAGIPLNDDDRWPWLEALGDAAASLAQKNKHVVIACS 75 (161)
T ss_pred CCCCccCHHHHHHHHHHHc-----CCceecccccCCHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCCceEEecH
Confidence 4899999999999999999 6889999998763 44578899999999999999888777777664554444
Q ss_pred CCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCC---CCC-CCc-EEEeCCCC
Q psy17388 103 SPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYE---APK-NPD-LILETVNV 177 (272)
Q Consensus 103 ~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye---~~~-~~~-~~Idt~~~ 177 (272)
.-.+.||+.+|.-.. .+.+|||+.+.+++.+|+ ..|.+++.....++++|+ .|. +++ +.||. +.
T Consensus 76 ALKr~YRD~LR~~~~----~~~Fv~L~g~~~~i~~Rm------~~R~gHFM~~~ll~SQfa~LE~P~~de~vi~idi-~~ 144 (161)
T COG3265 76 ALKRSYRDLLREANP----GLRFVYLDGDFDLILERM------KARKGHFMPASLLDSQFATLEEPGADEDVLTIDI-DQ 144 (161)
T ss_pred HHHHHHHHHHhccCC----CeEEEEecCCHHHHHHHH------HhcccCCCCHHHHHHHHHHhcCCCCCCCEEEeeC-CC
Confidence 445678888776543 356699999999999999 577788777777888876 343 234 56676 46
Q ss_pred CHHHHHHHHHHHHHhC
Q psy17388 178 PVEKCANSVLDMIAAK 193 (272)
Q Consensus 178 ~~ee~~~~I~~~L~~~ 193 (272)
++++++++++..++..
T Consensus 145 ~~e~vv~~~~~~l~~~ 160 (161)
T COG3265 145 PPEEVVAQALAWLKEG 160 (161)
T ss_pred CHHHHHHHHHHHHhcc
Confidence 9999999999998753
No 22
>KOG3354|consensus
Probab=99.78 E-value=4.2e-18 Score=133.83 Aligned_cols=160 Identities=18% Similarity=0.302 Sum_probs=122.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccc-----ccccCCCCHHHHHHHHHHHHHHHHHHHhCCCe
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNG-----INANLAFSEEDRNENVRRAAECAKMFAECGFI 96 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~-----l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~ 96 (272)
+-+|++.|.+||||||++++|++.| .+.|+|+|++... +..+.+.++++|..|+..+...++.-+.+|..
T Consensus 12 k~~i~vmGvsGsGKSTigk~L~~~l-----~~~F~dgDd~Hp~~NveKM~~GipLnD~DR~pWL~~i~~~~~~~l~~~q~ 86 (191)
T KOG3354|consen 12 KYVIVVMGVSGSGKSTIGKALSEEL-----GLKFIDGDDLHPPANVEKMTQGIPLNDDDRWPWLKKIAVELRKALASGQG 86 (191)
T ss_pred ceeEEEEecCCCChhhHHHHHHHHh-----CCcccccccCCCHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHhhcCCe
Confidence 3489999999999999999999999 5778999998653 34567889999999999998766555557777
Q ss_pred EEEcCCCCcHHHHHHHHHHHHh------CCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCC---CCCC
Q psy17388 97 ALCSFVSPTAAARDRAREIHRN------ANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYE---APKN 167 (272)
Q Consensus 97 VI~d~~~~~~~~r~~~~~~~~~------~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye---~~~~ 167 (272)
||..+.+-.+.+|+.++.-.+. ....+.+|+|.++.+++.+|+. .|.+++...+.+.++|. .|..
T Consensus 87 vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~------~R~gHFMp~~lleSQf~~LE~p~~ 160 (191)
T KOG3354|consen 87 VVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLK------KRKGHFMPADLLESQFATLEAPDA 160 (191)
T ss_pred EEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHh------hcccccCCHHHHHHHHHhccCCCC
Confidence 7766555566788888774431 1235678999999999999994 56667766666777775 3432
Q ss_pred C--c-EEEeCCCCCHHHHHHHHHHHHHh
Q psy17388 168 P--D-LILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 168 ~--~-~~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
+ + +.|+..+.+++++++.|.+.+..
T Consensus 161 ~e~div~isv~~~~~e~iv~tI~k~~~~ 188 (191)
T KOG3354|consen 161 DEEDIVTISVKTYSVEEIVDTIVKMVAL 188 (191)
T ss_pred CccceEEEeeccCCHHHHHHHHHHHHHh
Confidence 2 2 67777778999999999987753
No 23
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.77 E-value=1.5e-17 Score=144.64 Aligned_cols=161 Identities=16% Similarity=0.306 Sum_probs=116.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHH-HHHHHHHHHHhCCCeEEEcCC
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVR-RAAECAKMFAECGFIALCSFV 102 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~-~i~~~~~~~~~~g~~VI~d~~ 102 (272)
+|+|+|+|||||||+|++|++.+...|+++.+++.|.++..+.. +.. ......+ .....++..++.|..||+|..
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~---~~~-~~e~~~~~~~~~~i~~~l~~~~~VI~D~~ 76 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPV---WKE-KYEEFIRDSTLYLIKTALKNKYSVIVDDT 76 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHH---hhH-HhHHHHHHHHHHHHHHHHhCCCeEEEecc
Confidence 58999999999999999999999877888999999988764421 111 1111122 223455666778888999998
Q ss_pred CCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCC------CCCcEEEeCCC
Q psy17388 103 SPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAP------KNPDLILETVN 176 (272)
Q Consensus 103 ~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~------~~~~~~Idt~~ 176 (272)
+.+...|..+.++++..+.++.+||+++|.+++.+|+.+|.. .-....+..+...|+.| ..++++||++.
T Consensus 77 ~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~----~~~~~~i~~l~~r~e~p~~~~~wd~~~~~vd~~~ 152 (249)
T TIGR03574 77 NYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGE----KIPNEVIKDMYEKFDEPGTKYSWDLPDLTIDTTK 152 (249)
T ss_pred chHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCC----CCCHHHHHHHHHhhCCCCCCCCccCceEEecCCC
Confidence 877778888888888888999999999999999999865421 00001122344455543 35789999864
Q ss_pred -CCHHHHHHHHHHHHHh
Q psy17388 177 -VPVEKCANSVLDMIAA 192 (272)
Q Consensus 177 -~~~ee~~~~I~~~L~~ 192 (272)
.+.+++++.|.+.+..
T Consensus 153 ~~~~~ei~~~i~~~~~~ 169 (249)
T TIGR03574 153 KIDYNEILEEILEISEN 169 (249)
T ss_pred CCCHHHHHHHHHHHhhc
Confidence 5789999999988754
No 24
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.74 E-value=9.7e-18 Score=135.85 Aligned_cols=157 Identities=18% Similarity=0.280 Sum_probs=103.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc---ccCCCCHHHHHHHHHHH-HHHHHHHHhCCCeEE
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN---ANLAFSEEDRNENVRRA-AECAKMFAECGFIAL 98 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~---~~~~~~~~~~~~~~~~i-~~~~~~~~~~g~~VI 98 (272)
+.|+|+|+|||||||++++||+.| +..++|.|.+.+... ....|. ...+..++.+ .++++.+...+..||
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L-----~~~F~D~D~~Ie~~~g~sI~eIF~-~~GE~~FR~~E~~vl~~l~~~~~~Vi 76 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKAL-----NLPFIDTDQEIEKRTGMSIAEIFE-EEGEEGFRRLETEVLKELLEEDNAVI 76 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHc-----CCCcccchHHHHHHHCcCHHHHHH-HHhHHHHHHHHHHHHHHHhhcCCeEE
Confidence 569999999999999999999999 677899998765322 112233 2334445544 556777777777888
Q ss_pred EcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcc-----cccc-ccccccCCCCCCCcEEE
Q psy17388 99 CSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGK-----IKSF-TGVSQPYEAPKNPDLIL 172 (272)
Q Consensus 99 ~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~-----~~~~-~~~~~~ye~~~~~~~~I 172 (272)
+++... ...+..+..+++.| .+|||++|.+++.+|+............ +..+ ..-...|+. .+++++
T Consensus 77 aTGGG~--v~~~enr~~l~~~g---~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~~~~l~~L~~~R~~~Y~e--~a~~~~ 149 (172)
T COG0703 77 ATGGGA--VLSEENRNLLKKRG---IVVYLDAPFETLYERLQRDRKRPLLQTEDPREELEELLEERQPLYRE--VADFII 149 (172)
T ss_pred ECCCcc--ccCHHHHHHHHhCC---eEEEEeCCHHHHHHHhccccCCCcccCCChHHHHHHHHHHHHHHHHH--hCcEEe
Confidence 776654 34455566667666 7899999999999999632110000000 1111 111122332 467899
Q ss_pred eCCCCCHHHHHHHHHHHHHhC
Q psy17388 173 ETVNVPVEKCANSVLDMIAAK 193 (272)
Q Consensus 173 dt~~~~~ee~~~~I~~~L~~~ 193 (272)
+++..+ ++++++|++.|...
T Consensus 150 ~~~~~~-~~v~~~i~~~l~~~ 169 (172)
T COG0703 150 DTDDRS-EEVVEEILEALEGS 169 (172)
T ss_pred cCCCCc-HHHHHHHHHHHHHh
Confidence 887766 89999999998764
No 25
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.72 E-value=1.2e-16 Score=130.07 Aligned_cols=151 Identities=17% Similarity=0.291 Sum_probs=100.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccc-----ccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEE
Q psy17388 25 LLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNG-----INANLAFSEEDRNENVRRAAECAKMFAECGFIALC 99 (272)
Q Consensus 25 I~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~-----l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI~ 99 (272)
|+|+|++||||||+|+.|++.+ +..++|.|.+... ...+.++...+...++..+.+.+..++..|..+|+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l-----~~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Vi 75 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL-----GAKFIEGDDLHPAANIEKMSAGIPLNDDDRWPWLQNLNDASTAAAAKNKVGII 75 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc-----CCeEEeCccccChHHHHHHHcCCCCChhhHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 5789999999999999999998 5778999997532 11233455555667777777666666666665555
Q ss_pred cCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcccccccccccc---CCCCC--C-CcEEEe
Q psy17388 100 SFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQP---YEAPK--N-PDLILE 173 (272)
Q Consensus 100 d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~---ye~~~--~-~~~~Id 173 (272)
+.......+++.+ ..++.++..|||++|.+++.+|+..|. ++......+..+ ++.|. . ..++||
T Consensus 76 ~~t~~~~~~r~~~----~~~~~~~~~i~l~~~~e~~~~R~~~R~------~~~~~~~~i~~~~~~~~~~~~~e~~~~~id 145 (163)
T TIGR01313 76 TCSALKRHYRDIL----REAEPNLHFIYLSGDKDVILERMKARK------GHFMKADMLESQFAALEEPLADETDVLRVD 145 (163)
T ss_pred EecccHHHHHHHH----HhcCCCEEEEEEeCCHHHHHHHHHhcc------CCCCCHHHHHHHHHHhCCCCCCCCceEEEE
Confidence 5554444455444 356778888999999999999996552 111111122222 23331 2 236777
Q ss_pred CCCCCHHHHHHHHHHHHH
Q psy17388 174 TVNVPVEKCANSVLDMIA 191 (272)
Q Consensus 174 t~~~~~ee~~~~I~~~L~ 191 (272)
++ .+++++.+++.++|-
T Consensus 146 ~~-~~~~~~~~~~~~~~~ 162 (163)
T TIGR01313 146 ID-QPLEGVEEDCIAVVL 162 (163)
T ss_pred CC-CCHHHHHHHHHHHHh
Confidence 75 589999999988774
No 26
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=99.70 E-value=5e-16 Score=127.91 Aligned_cols=161 Identities=15% Similarity=0.267 Sum_probs=107.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc-cCCCCHHH-HHHHHHHHHHHHHHHHhCCCeEEEc
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA-NLAFSEED-RNENVRRAAECAKMFAECGFIALCS 100 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~-~~~~~~~~-~~~~~~~i~~~~~~~~~~g~~VI~d 100 (272)
++|+++|+|||||||+|+.|++.|...++.+.++..|..+--+.. ..+...+. ++.........+...++ ...||+|
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~~ks~~rlldSalk-n~~VIvD 80 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESFLKSVERLLDSALK-NYLVIVD 80 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHHHHHHHHHHHHHHhc-ceEEEEe
Confidence 589999999999999999999999988888888887654432211 11211111 11111111111111122 5689999
Q ss_pred CCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccc--cccccccCCCC------CCCcEEE
Q psy17388 101 FVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKS--FTGVSQPYEAP------KNPDLIL 172 (272)
Q Consensus 101 ~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~--~~~~~~~ye~~------~~~~~~I 172 (272)
.++.+...|..+...++....++.+||+.||+++|.+|+. .+...++. +..+-..|++| ..|-++|
T Consensus 81 dtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~------ergepip~Evl~qly~RfEePn~~~rWDspll~i 154 (261)
T COG4088 81 DTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNR------ERGEPIPEEVLRQLYDRFEEPNPDRRWDSPLLVI 154 (261)
T ss_pred cccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhc------cCCCCCCHHHHHHHHHhhcCCCCCccccCceEEE
Confidence 9999999999999999999999999999999999999983 33333332 33455667765 4677889
Q ss_pred eCCCCCHHHHHHHHHHHHH
Q psy17388 173 ETVNVPVEKCANSVLDMIA 191 (272)
Q Consensus 173 dt~~~~~ee~~~~I~~~L~ 191 (272)
|++ ....+.++-|...+.
T Consensus 155 d~~-d~~t~~IDfiesvl~ 172 (261)
T COG4088 155 DDS-DVSTEVIDFIESVLR 172 (261)
T ss_pred ecc-cccccchhHHHHHHH
Confidence 863 344445555555444
No 27
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.70 E-value=4.4e-17 Score=129.34 Aligned_cols=114 Identities=17% Similarity=0.244 Sum_probs=90.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccccc----CCCCHHHHHHHHHHHHHHHHHHHhCCCeEEE
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINAN----LAFSEEDRNENVRRAAECAKMFAECGFIALC 99 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~----~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI~ 99 (272)
+|+|+|+|||||||+|+.|++.+ +..+++.|.++..+... ..+.........+.+...+...++.|..+|+
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~-----~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~vv 75 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL-----GAVVISQDEIRRRLAGEDPPSPSDYIEAEERAYQILNAAIRKALRNGNSVVV 75 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS-----TEEEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHC-----CCEEEeHHHHHHHHcccccccchhHHHHHHHHHHHHHHHHHHHHHcCCCcee
Confidence 68999999999999999999998 58889999988765432 1233333334444555677778889999999
Q ss_pred cCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388 100 SFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG 142 (272)
Q Consensus 100 d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r 142 (272)
|..+.....|+.+.++++..|.++.+|++++|.+++.+|+..|
T Consensus 76 d~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R 118 (143)
T PF13671_consen 76 DNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQR 118 (143)
T ss_dssp ESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTT
T ss_pred ccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhc
Confidence 9888878899999999999999999999999999999999765
No 28
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.70 E-value=1.7e-16 Score=127.33 Aligned_cols=112 Identities=22% Similarity=0.261 Sum_probs=83.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccc-----ccccCCCCHHHHHHHHHHHHHHHHHHH-hCCCeE
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNG-----INANLAFSEEDRNENVRRAAECAKMFA-ECGFIA 97 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~-----l~~~~~~~~~~~~~~~~~i~~~~~~~~-~~g~~V 97 (272)
+|+|+|+|||||||+|+.|++.+ +..++|.|.++.. +..+.++....+..+...+...+...+ ..|..|
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~-----~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v 75 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL-----GAPFIDGDDLHPPANIAKMAAGIPLNDEDRWPWLQALTDALLAKLASAGEGV 75 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc-----CCEEEeCcccccHHHHHHHHcCCCCCccchhhHHHHHHHHHHHHHHhCCCCE
Confidence 58999999999999999999998 6778999999874 222333443445566666654443333 467777
Q ss_pred EEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388 98 LCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG 142 (272)
Q Consensus 98 I~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r 142 (272)
|++..+....+++.+++++ .+.++.+||++||.+++.+|+..|
T Consensus 76 Vid~~~~~~~~r~~~~~~~--~~~~~~~v~l~~~~~~~~~R~~~R 118 (150)
T cd02021 76 VVACSALKRIYRDILRGGA--ANPRVRFVHLDGPREVLAERLAAR 118 (150)
T ss_pred EEEeccccHHHHHHHHhcC--CCCCEEEEEEECCHHHHHHHHHhc
Confidence 7777766677788877776 567889999999999999999655
No 29
>PRK13948 shikimate kinase; Provisional
Probab=99.70 E-value=9.2e-17 Score=133.02 Aligned_cols=160 Identities=13% Similarity=0.156 Sum_probs=97.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc-c--CCCCHHHHHHHHHHH-HHHHHHHHhCCC
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA-N--LAFSEEDRNENVRRA-AECAKMFAECGF 95 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~-~--~~~~~~~~~~~~~~i-~~~~~~~~~~g~ 95 (272)
.++..|+|+|+|||||||+++.|++.| +..++|.|.+.+.... . ..|. ...+..++++ .++++.+...+.
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~l-----g~~~iD~D~~ie~~~g~si~~if~-~~Ge~~fR~~E~~~l~~l~~~~~ 81 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRAL-----MLHFIDTDRYIERVTGKSIPEIFR-HLGEAYFRRCEAEVVRRLTRLDY 81 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc-----CCCEEECCHHHHHHHhCCHHHHHH-HhCHHHHHHHHHHHHHHHHhcCC
Confidence 356899999999999999999999999 4556799976654321 1 1111 1223344443 345556665566
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCC----CCCCcEE
Q psy17388 96 IALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEA----PKNPDLI 171 (272)
Q Consensus 96 ~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~----~~~~~~~ 171 (272)
.||..+... ..+...++.+.+.| .+|||++|++++.+|+..+. +...........+.+.|+. +..++++
T Consensus 82 ~VIa~GgG~--v~~~~n~~~l~~~g---~vV~L~~~~e~l~~Rl~~~~--RPll~~~~~~~~l~~l~~~R~~~Y~~a~~~ 154 (182)
T PRK13948 82 AVISLGGGT--FMHEENRRKLLSRG---PVVVLWASPETIYERTRPGD--RPLLQVEDPLGRIRTLLNEREPVYRQATIH 154 (182)
T ss_pred eEEECCCcE--EcCHHHHHHHHcCC---eEEEEECCHHHHHHHhcCCC--CCCCCCCChHHHHHHHHHHHHHHHHhCCEE
Confidence 676543322 11122233344444 67999999999999994321 0000000001111211211 1247899
Q ss_pred EeCCCCCHHHHHHHHHHHHHh
Q psy17388 172 LETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 172 Idt~~~~~ee~~~~I~~~L~~ 192 (272)
|+|++.++++++++|.+.|..
T Consensus 155 i~t~~~~~~ei~~~i~~~l~~ 175 (182)
T PRK13948 155 VSTDGRRSEEVVEEIVEKLWA 175 (182)
T ss_pred EECCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999876
No 30
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=99.69 E-value=1e-15 Score=134.18 Aligned_cols=157 Identities=19% Similarity=0.332 Sum_probs=93.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHH-HHHHHHHHHHhCCCeEEEcC
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVR-RAAECAKMFAECGFIALCSF 101 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~-~i~~~~~~~~~~g~~VI~d~ 101 (272)
.+|+|+|.|||||||+|+.|++.+...+..+.+++.|.+. +..+. |.....+...+ .+.......+....+||+|.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~--~~~~~-y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd 78 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG--IDRND-YADSKKEKEARGSLKSAVERALSKDTIVILDD 78 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH---TTSS-S--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc--cchhh-hhchhhhHHHHHHHHHHHHHhhccCeEEEEeC
Confidence 4899999999999999999999999888899999977665 22222 43322222222 23333344556678999999
Q ss_pred CCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcccc--ccccccccCCCC------CCCcEEEe
Q psy17388 102 VSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIK--SFTGVSQPYEAP------KNPDLILE 173 (272)
Q Consensus 102 ~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~--~~~~~~~~ye~~------~~~~~~Id 173 (272)
.+.++.+|..+.++++..+.++.+||++||.++|.+|+.+|... ..+. -+..+..+||.| +.|-++|+
T Consensus 79 ~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~----~~~~~e~i~~m~~RfE~P~~~nrWD~plf~i~ 154 (270)
T PF08433_consen 79 NNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEP----ERYPEETIDDMIQRFEEPDPKNRWDSPLFTID 154 (270)
T ss_dssp ---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S------S-HHHHHHHHHH---TTSS-GGGS-SEEEE
T ss_pred CchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCC----CCCCHHHHHHHHHHhcCCCCCCCccCCeEEEe
Confidence 99999999999999999999999999999999999999655211 0111 244466778865 34678888
Q ss_pred CC--CCCHHHHHHHH
Q psy17388 174 TV--NVPVEKCANSV 186 (272)
Q Consensus 174 t~--~~~~ee~~~~I 186 (272)
++ ..+.+++.+.|
T Consensus 155 ~~~~~~~~~~I~~~l 169 (270)
T PF08433_consen 155 SSDEELPLEEIWNAL 169 (270)
T ss_dssp -TTS---HHHHHHHH
T ss_pred cCCCCCCHHHHHHHH
Confidence 42 22334444444
No 31
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.67 E-value=3e-16 Score=128.44 Aligned_cols=162 Identities=18% Similarity=0.198 Sum_probs=93.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc-cC--CCCHHHHHHHHHHHHHHHHHHHhCCCeE
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA-NL--AFSEEDRNENVRRAAECAKMFAECGFIA 97 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~-~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~V 97 (272)
++.+|+|+|+|||||||+|++|++.+ ++.++|.|.+...... +. .+.......+.+....+...+......|
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l-----~~~~~d~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~v 77 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL-----GYDFIDTDHLIEARAGKSIPEIFEEEGEAAFRELEEEVLAELLARHNLV 77 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh-----CCCEEEChHHHHHHcCCCHHHHHHHHCHHHHHHHHHHHHHHHHhcCCCE
Confidence 56799999999999999999999999 5667888876543221 10 0111111122222234444444433345
Q ss_pred EEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCC----C-CCCcEEE
Q psy17388 98 LCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEA----P-KNPDLIL 172 (272)
Q Consensus 98 I~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~----~-~~~~~~I 172 (272)
|..+... ......+..++.. .+.|||++|.+++.+|+.++....... .......+...|.. + ..++++|
T Consensus 78 i~~g~~~--~~~~~~r~~l~~~---~~~v~l~~~~~~~~~R~~~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~dl~i 151 (175)
T PRK00131 78 ISTGGGA--VLREENRALLRER---GTVVYLDASFEELLRRLRRDRNRPLLQ-TNDPKEKLRDLYEERDPLYEEVADITV 151 (175)
T ss_pred EEeCCCE--eecHHHHHHHHhC---CEEEEEECCHHHHHHHhcCCCCCCcCC-CCChHHHHHHHHHHHHHHHHhhcCeEE
Confidence 5433221 1122333444333 377999999999999996542100000 00000011111111 1 2378999
Q ss_pred eCCCCCHHHHHHHHHHHHHhC
Q psy17388 173 ETVNVPVEKCANSVLDMIAAK 193 (272)
Q Consensus 173 dt~~~~~ee~~~~I~~~L~~~ 193 (272)
||++.+++++++.|.+++...
T Consensus 152 dt~~~~~~e~~~~I~~~v~~~ 172 (175)
T PRK00131 152 ETDGRSPEEVVNEILEKLEAA 172 (175)
T ss_pred eCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999753
No 32
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.67 E-value=3.9e-15 Score=121.43 Aligned_cols=148 Identities=19% Similarity=0.305 Sum_probs=97.8
Q ss_pred EcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc-----cccccCCCCHHHHHHHHHHHHHHHHHHH-hCCCeEEEcC
Q psy17388 28 PGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN-----GINANLAFSEEDRNENVRRAAECAKMFA-ECGFIALCSF 101 (272)
Q Consensus 28 ~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~-----~l~~~~~~~~~~~~~~~~~i~~~~~~~~-~~g~~VI~d~ 101 (272)
.|+|||||||+++.|+..+ +..++|+|.+.. ....+.++...++..+...+.+.+..+. ..|..||+ .
T Consensus 1 ~G~sGsGKSTla~~la~~l-----~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv-~ 74 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQL-----HAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIV-C 74 (163)
T ss_pred CCCCCCcHHHHHHHHHHHh-----CCeEEeCccCCchhhhccccCCCCCChhhHHHHHHHHHHHHHHHHHcCCceEEE-E
Confidence 4999999999999999999 567899997532 1222456666666677777766665444 34544443 3
Q ss_pred CCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccc---cccCCCCCC--Cc-EEEeCC
Q psy17388 102 VSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGV---SQPYEAPKN--PD-LILETV 175 (272)
Q Consensus 102 ~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~---~~~ye~~~~--~~-~~Idt~ 175 (272)
.+....+| +.+...+.+|..|||+||.+++.+|+..|. ++......+ ...+++|.. .+ ++||++
T Consensus 75 s~~~~~~r----~~~~~~~~~~~~v~l~a~~~~l~~Rl~~R~------~~~a~~~vl~~Q~~~~ep~~~~e~~~~~id~~ 144 (163)
T PRK11545 75 SALKKHYR----DLLREGNPNLSFIYLKGDFDVIESRLKARK------GHFFKTQMLVTQFETLQEPGADETDVLVVDID 144 (163)
T ss_pred ecchHHHH----HHHHccCCCEEEEEEECCHHHHHHHHHhcc------CCCCCHHHHHHHHHHcCCCCCCCCCEEEEeCC
Confidence 33333444 444556789999999999999999996552 222222112 223555532 23 566765
Q ss_pred CCCHHHHHHHHHHHHHh
Q psy17388 176 NVPVEKCANSVLDMIAA 192 (272)
Q Consensus 176 ~~~~ee~~~~I~~~L~~ 192 (272)
.+++++++.++..+.+
T Consensus 145 -~~~~~~~~~~~~~~~~ 160 (163)
T PRK11545 145 -QPLEGVVASTIEVIKK 160 (163)
T ss_pred -CCHHHHHHHHHHHHHH
Confidence 5899999999999865
No 33
>PRK13946 shikimate kinase; Provisional
Probab=99.65 E-value=6.1e-16 Score=128.63 Aligned_cols=162 Identities=15% Similarity=0.220 Sum_probs=97.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCC---HHHHHHHHHHH-HHHHHHHHhCCC
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFS---EEDRNENVRRA-AECAKMFAECGF 95 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~---~~~~~~~~~~i-~~~~~~~~~~g~ 95 (272)
..++.|+|+|+|||||||+|+.|+++| ++.++|.|.+.+.... .+.. ......+++.+ .++...+.+.+.
T Consensus 8 ~~~~~I~l~G~~GsGKsti~~~LA~~L-----g~~~id~D~~~~~~~g-~~~~e~~~~~ge~~~~~~e~~~l~~l~~~~~ 81 (184)
T PRK13946 8 LGKRTVVLVGLMGAGKSTVGRRLATML-----GLPFLDADTEIERAAR-MTIAEIFAAYGEPEFRDLERRVIARLLKGGP 81 (184)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHc-----CCCeECcCHHHHHHhC-CCHHHHHHHHCHHHHHHHHHHHHHHHHhcCC
Confidence 355789999999999999999999999 4567899875443321 1110 11122333333 345555666666
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhh-cc-ccccccccccCCC-CCCCcEEE
Q psy17388 96 IALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKARE-GK-IKSFTGVSQPYEA-PKNPDLIL 172 (272)
Q Consensus 96 ~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~-~~-~~~~~~~~~~ye~-~~~~~~~I 172 (272)
.||+++...+ .....+..+...+ +.|||++|++++.+|+.+|.....-. .. ...+..+...+.+ +..++++|
T Consensus 82 ~Vi~~ggg~~--~~~~~r~~l~~~~---~~v~L~a~~e~~~~Rl~~r~~rp~~~~~~~~~~i~~~~~~R~~~y~~~dl~i 156 (184)
T PRK13946 82 LVLATGGGAF--MNEETRAAIAEKG---ISVWLKADLDVLWERVSRRDTRPLLRTADPKETLARLMEERYPVYAEADLTV 156 (184)
T ss_pred eEEECCCCCc--CCHHHHHHHHcCC---EEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHHHHhCCEEE
Confidence 7776644321 1122233333333 67999999999999996542110000 00 0111111111111 22468999
Q ss_pred eCCCCCHHHHHHHHHHHHHh
Q psy17388 173 ETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 173 dt~~~~~ee~~~~I~~~L~~ 192 (272)
++++.+++++++.|.+.+..
T Consensus 157 ~~~~~~~~~~~~~i~~~i~~ 176 (184)
T PRK13946 157 ASRDVPKEVMADEVIEALAA 176 (184)
T ss_pred ECCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999876
No 34
>COG0645 Predicted kinase [General function prediction only]
Probab=99.63 E-value=5e-15 Score=118.89 Aligned_cols=116 Identities=19% Similarity=0.257 Sum_probs=103.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc--------cCCCCHHHHHHHHHHHHHHHHHHHhC
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA--------NLAFSEEDRNENVRRAAECAKMFAEC 93 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~--------~~~~~~~~~~~~~~~i~~~~~~~~~~ 93 (272)
+.++++.|.||+||||+|+.|++.+ +...+.+|.+++.|.. .-.|+.......|..+...+..+++.
T Consensus 1 ~~l~l~~Gl~GsGKstlA~~l~~~l-----gA~~lrsD~irk~L~g~p~~~r~~~g~ys~~~~~~vy~~l~~~A~l~l~~ 75 (170)
T COG0645 1 GRLVLVGGLPGSGKSTLARGLAELL-----GAIRLRSDVIRKRLFGVPEETRGPAGLYSPAATAAVYDELLGRAELLLSS 75 (170)
T ss_pred CeEEEEecCCCccHhHHHHHHHhhc-----CceEEehHHHHHHhcCCcccccCCCCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence 3689999999999999999999999 7889999999998875 22366666677888888899999999
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388 94 GFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG 142 (272)
Q Consensus 94 g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r 142 (272)
|..||.|..+.....|+.++.+++..|++|..|++.++.+++..|+..|
T Consensus 76 G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR 124 (170)
T COG0645 76 GHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAAR 124 (170)
T ss_pred CCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHh
Confidence 9999999999888999999999999999999999999999999999533
No 35
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.63 E-value=4.2e-15 Score=122.30 Aligned_cols=158 Identities=18% Similarity=0.232 Sum_probs=93.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc-cCC--CCHHHHHHHHHH-HHHHHHHHHhCCCeE
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA-NLA--FSEEDRNENVRR-AAECAKMFAECGFIA 97 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~-~~~--~~~~~~~~~~~~-i~~~~~~~~~~g~~V 97 (272)
...|+|.|++||||||+++.|++.+ +..++|.|........ +.. |... ....++. -.++...+...+..|
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l-----~~~~vd~D~~i~~~~g~~i~~~~~~~-g~~~fr~~e~~~l~~l~~~~~~v 77 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL-----NMEFYDSDQEIEKRTGADIGWVFDVE-GEEGFRDREEKVINELTEKQGIV 77 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc-----CCcEEECCchHHHHhCcCHhHHHHHh-CHHHHHHHHHHHHHHHHhCCCEE
Confidence 4579999999999999999999998 4566788765432221 111 1111 1112222 233444455555566
Q ss_pred EEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhh-hccc-cccccc----cccCCCCCCCcEE
Q psy17388 98 LCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAR-EGKI-KSFTGV----SQPYEAPKNPDLI 171 (272)
Q Consensus 98 I~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r-~~~~-~~~~~~----~~~ye~~~~~~~~ 171 (272)
+..+... ......+.+++..| .+|||++|.+++.+|+..+..+..- .... ..+..+ ...|+ ..++++
T Consensus 78 i~~ggg~--v~~~~~~~~l~~~~---~vv~L~~~~e~~~~Ri~~~~~rP~~~~~~~~~~~~~l~~~R~~~Y~--~~Ad~~ 150 (172)
T PRK05057 78 LATGGGS--VKSRETRNRLSARG---VVVYLETTIEKQLARTQRDKKRPLLQVDDPREVLEALANERNPLYE--EIADVT 150 (172)
T ss_pred EEcCCch--hCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHH--hhCCEE
Confidence 6544332 11222334455555 7899999999999999643111000 0000 001111 11232 247899
Q ss_pred EeCCCCCHHHHHHHHHHHHHh
Q psy17388 172 LETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 172 Idt~~~~~ee~~~~I~~~L~~ 192 (272)
|||++.+++++++.|++.+.+
T Consensus 151 idt~~~s~~ei~~~i~~~l~~ 171 (172)
T PRK05057 151 IRTDDQSAKVVANQIIHMLES 171 (172)
T ss_pred EECCCCCHHHHHHHHHHHHhh
Confidence 999999999999999998865
No 36
>PRK13947 shikimate kinase; Provisional
Probab=99.62 E-value=3.1e-15 Score=122.55 Aligned_cols=159 Identities=13% Similarity=0.146 Sum_probs=91.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccccc-C-CCCHHHHHHHHHHH-HHHHHHHHhCCCeEEEc
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINAN-L-AFSEEDRNENVRRA-AECAKMFAECGFIALCS 100 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~-~-~~~~~~~~~~~~~i-~~~~~~~~~~g~~VI~d 100 (272)
.|+|+|+|||||||+|+.|+++| ++.++|.|.+.+..... . .+.......+++.. ..+.+.+...+..||..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l-----g~~~id~d~~~~~~~g~~~~~~~~~~ge~~~~~~e~~~~~~l~~~~~~vi~~ 77 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL-----SFGFIDTDKEIEKMTGMTVAEIFEKDGEVRFRSEEKLLVKKLARLKNLVIAT 77 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh-----CCCEEECchhhhhhcCCcHHHHHHHhChHHHHHHHHHHHHHHhhcCCeEEEC
Confidence 59999999999999999999999 45568888765543211 0 00011112233333 23444555555566643
Q ss_pred CCC-CcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCC----CCCCcEEEeCC
Q psy17388 101 FVS-PTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEA----PKNPDLILETV 175 (272)
Q Consensus 101 ~~~-~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~----~~~~~~~Idt~ 175 (272)
+.. .... +.+ ..+.+.+ .+|||++|++++.+|+..+........ ......+...|+. ...++++|||+
T Consensus 78 g~g~vl~~--~~~-~~l~~~~---~vv~L~~~~~~l~~Rl~~r~~rp~~~~-~~~~~~i~~~~~~r~~~y~~ad~~Idt~ 150 (171)
T PRK13947 78 GGGVVLNP--ENV-VQLRKNG---VVICLKARPEVILRRVGKKKSRPLLMV-GDPEERIKELLKEREPFYDFADYTIDTG 150 (171)
T ss_pred CCCCcCCH--HHH-HHHHhCC---EEEEEECCHHHHHHHhcCCCCCCCCCC-CChHHHHHHHHHHHHHHHHhcCEEEECC
Confidence 321 1111 122 2334444 579999999999999964421100000 0001111111111 12468999999
Q ss_pred CCCHHHHHHHHHH-HHHhCC
Q psy17388 176 NVPVEKCANSVLD-MIAAKG 194 (272)
Q Consensus 176 ~~~~ee~~~~I~~-~L~~~~ 194 (272)
+.++++++++|.+ ++.++|
T Consensus 151 ~~~~~~i~~~I~~~~~~~~~ 170 (171)
T PRK13947 151 DMTIDEVAEEIIKAYLKLKN 170 (171)
T ss_pred CCCHHHHHHHHHHHHHhhhc
Confidence 9999999999999 776653
No 37
>PRK13949 shikimate kinase; Provisional
Probab=99.61 E-value=2e-15 Score=123.84 Aligned_cols=156 Identities=13% Similarity=0.106 Sum_probs=89.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc-cc--CCCCHHHHHHHHHHH-HHHHHHHHhCCCeEEE
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN-AN--LAFSEEDRNENVRRA-AECAKMFAECGFIALC 99 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~-~~--~~~~~~~~~~~~~~i-~~~~~~~~~~g~~VI~ 99 (272)
.|+|+|+|||||||+++.|++.+ ++.++|.|.+.+... .. ..|.. ...+.++.+ .++++.+......||+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l-----~~~~id~D~~i~~~~~~~~~~~~~~-~g~~~fr~~e~~~l~~l~~~~~~vis 76 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL-----GLSFIDLDFFIENRFHKTVGDIFAE-RGEAVFRELERNMLHEVAEFEDVVIS 76 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-----CCCeecccHHHHHHHCccHHHHHHH-hCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 58999999999999999999999 566788886643211 11 11111 112233333 3444555545556775
Q ss_pred cCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccc--cc-cccccccCC---C-CCCCcEEE
Q psy17388 100 SFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKI--KS-FTGVSQPYE---A-PKNPDLIL 172 (272)
Q Consensus 100 d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~--~~-~~~~~~~ye---~-~~~~~~~I 172 (272)
++.... .......++++.| ++|||++|++++.+|+..+...+...... +. +..+...|+ + +..++++|
T Consensus 77 ~Ggg~~--~~~~~~~~l~~~~---~vi~L~~~~~~~~~Ri~~~~~~RP~~~~~~~~~~~~~i~~l~~~R~~~Y~~ad~~i 151 (169)
T PRK13949 77 TGGGAP--CFFDNMELMNASG---TTVYLKVSPEVLFVRLRLAKQQRPLLKGKSDEELLDFIIEALEKRAPFYRQAKIIF 151 (169)
T ss_pred cCCccc--CCHHHHHHHHhCC---eEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 543321 1112223444455 67999999999999985321111000000 00 001111121 1 12367999
Q ss_pred eCCCCCHHHHHHHHHHHH
Q psy17388 173 ETVNVPVEKCANSVLDMI 190 (272)
Q Consensus 173 dt~~~~~ee~~~~I~~~L 190 (272)
|+++.+++++++.|++.|
T Consensus 152 d~~~~~~~e~~~~I~~~~ 169 (169)
T PRK13949 152 NADKLEDESQIEQLVQRL 169 (169)
T ss_pred ECCCCCHHHHHHHHHHhC
Confidence 999999999999998753
No 38
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.60 E-value=2.3e-14 Score=118.29 Aligned_cols=154 Identities=19% Similarity=0.301 Sum_probs=100.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccc-----ccccCCCCHHHHHHHHHHHHHHHHHHHh---
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNG-----INANLAFSEEDRNENVRRAAECAKMFAE--- 92 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~-----l~~~~~~~~~~~~~~~~~i~~~~~~~~~--- 92 (272)
++.+++|.|++||||||+++.|+..+ +..++++|.+... +..+.++....+..+...+.+.+..+..
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l-----~~~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALF-----SAKFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYSLYKKNE 76 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc-----CCEEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHHHHhcCC
Confidence 46789999999999999999999998 4568999986442 1224555555555555555555443322
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcccccccccccc---CCCCC--C
Q psy17388 93 CGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQP---YEAPK--N 167 (272)
Q Consensus 93 ~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~---ye~~~--~ 167 (272)
.| .|++++.. ..+|+ ++++.+.+|..|||+||.+++.+|+.+|. ++......+.++ |++|. .
T Consensus 77 ~g-~iv~s~~~--~~~R~----~~r~~~~~~~~v~l~a~~~~l~~Rl~~R~------~~~~~~~vl~~Q~~~~e~~~~~e 143 (176)
T PRK09825 77 TG-FIVCSSLK--KQYRD----ILRKSSPNVHFLWLDGDYETILARMQRRA------GHFMPPDLLQSQFDALERPCADE 143 (176)
T ss_pred CE-EEEEEecC--HHHHH----HHHhhCCCEEEEEEeCCHHHHHHHHhccc------CCCCCHHHHHHHHHHcCCCCCCc
Confidence 33 34455432 34444 44556778999999999999999997652 222222223333 34442 2
Q ss_pred -CcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388 168 -PDLILETVNVPVEKCANSVLDMIAAK 193 (272)
Q Consensus 168 -~~~~Idt~~~~~ee~~~~I~~~L~~~ 193 (272)
..+.||++ .+++++++++...+.+.
T Consensus 144 ~~~~~~d~~-~~~~~~~~~~~~~~~~~ 169 (176)
T PRK09825 144 HDIARIDVN-HDIENVTEQCRQAVQAF 169 (176)
T ss_pred CCeEEEECC-CCHHHHHHHHHHHHHHH
Confidence 23678875 57888999998888754
No 39
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.58 E-value=1.8e-14 Score=114.46 Aligned_cols=154 Identities=19% Similarity=0.285 Sum_probs=94.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHH------HH-HHHHHHHHHHHhCCC
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNE------NV-RRAAECAKMFAECGF 95 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~------~~-~~i~~~~~~~~~~g~ 95 (272)
++|.|.|+|||||||+|+.|++.+ |++ +++...+.+.+....+++-.+... .+ ..+...++.+..+|.
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~---gl~--~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~iD~~iD~rq~e~a~~~n 75 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHL---GLK--LVSAGTIFREMARERGMSLEEFSRYAEEDPEIDKEIDRRQKELAKEGN 75 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHh---CCc--eeeccHHHHHHHHHcCCCHHHHHHHHhcCchhhHHHHHHHHHHHHcCC
Confidence 479999999999999999999999 444 455444433344433333221111 11 122334455666777
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh---hhhhhhc----------cccccccccccC
Q psy17388 96 IALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH---YKKAREG----------KIKSFTGVSQPY 162 (272)
Q Consensus 96 ~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~---~~~~r~~----------~~~~~~~~~~~y 162 (272)
+|+-+.+..| + ++ ..+.+.|||.+|.+++.+|+.+|. +...+.. +...+.+++-.
T Consensus 76 vVlegrLA~W------i---~k--~~adlkI~L~Apl~vRa~Ria~REgi~~~~a~~~~~~RE~se~kRY~~~YgIDid- 143 (179)
T COG1102 76 VVLEGRLAGW------I---VR--EYADLKIWLKAPLEVRAERIAKREGIDVDEALAETVEREESEKKRYKKIYGIDID- 143 (179)
T ss_pred eEEhhhhHHH------H---hc--cccceEEEEeCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCc-
Confidence 7776655432 1 11 235588999999999999998772 1111111 11112222111
Q ss_pred CCCCCCcEEEeCCCCCHHHHHHHHHHHHHhCC
Q psy17388 163 EAPKNPDLILETVNVPVEKCANSVLDMIAAKG 194 (272)
Q Consensus 163 e~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~~ 194 (272)
.....|++|||++.+++++..-|..++....
T Consensus 144 -DlSiyDLVinTs~~~~~~v~~il~~aid~~~ 174 (179)
T COG1102 144 -DLSIYDLVINTSKWDPEEVFLILLDAIDALS 174 (179)
T ss_pred -cceeeEEEEecccCCHHHHHHHHHHHHHhhc
Confidence 1235689999999999999998888887653
No 40
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.56 E-value=5.3e-14 Score=125.44 Aligned_cols=117 Identities=21% Similarity=0.265 Sum_probs=88.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccccc-----CCCCHHHHHHHHHHHHHHHHHHHhCCCe
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINAN-----LAFSEEDRNENVRRAAECAKMFAECGFI 96 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~g~~ 96 (272)
+.+|+++|+|||||||+|+.|++.+. ++.+++.|.++..+... ..|...............+...+..|..
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~----~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 77 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP----KAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAALKSGKS 77 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC----CCEEEeccHHHHHhcCCCcccccccChHHHHHHHHHHHHHHHHHHHcCCe
Confidence 47899999999999999999999983 57889999988765321 1232222111122233445556678888
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388 97 ALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG 142 (272)
Q Consensus 97 VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r 142 (272)
||+|..+.....+..+..+++..+..+..|||++|.+++.+|+.+|
T Consensus 78 vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R 123 (300)
T PHA02530 78 VIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKR 123 (300)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHcc
Confidence 8888877777888888888888888888899999999999999776
No 41
>PLN02199 shikimate kinase
Probab=99.55 E-value=2.4e-14 Score=125.52 Aligned_cols=160 Identities=13% Similarity=0.162 Sum_probs=96.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccC----CCCHHHHHHHHHHH-HHHHHHHHhCCC
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANL----AFSEEDRNENVRRA-AECAKMFAECGF 95 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~----~~~~~~~~~~~~~i-~~~~~~~~~~g~ 95 (272)
++..|+|+|++||||||+++.|++.+ ++.++|.|.+.+....+. .|. ...+..++.. .++.+.+.....
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~L-----g~~fIDtD~lIe~~~~G~sI~eIf~-~~GE~~FR~~E~e~L~~L~~~~~ 174 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKVL-----GYTFFDCDTLIEQAMNGTSVAEIFV-HHGENFFRGKETDALKKLSSRYQ 174 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh-----CCCEEehHHHHHHHhcCCCHHHHHH-HhCHHHHHHHHHHHHHHHHhcCC
Confidence 46789999999999999999999999 566789997655431111 111 1122333333 445555555555
Q ss_pred eEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh-hhhhhhh-cc-ccc----cccccccCCC----
Q psy17388 96 IALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG-HYKKARE-GK-IKS----FTGVSQPYEA---- 164 (272)
Q Consensus 96 ~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r-~~~~~r~-~~-~~~----~~~~~~~ye~---- 164 (272)
.||..+... ..+...+.++. .| ++|||++|++++.+|+.+. ...+... .. ... ...+...|+.
T Consensus 175 ~VIStGGG~--V~~~~n~~~L~-~G---~vV~Ldas~E~l~~RL~~~~~~~RPLL~~~~~d~~~~~~~~L~~L~~~R~pl 248 (303)
T PLN02199 175 VVVSTGGGA--VIRPINWKYMH-KG---ISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDERGEA 248 (303)
T ss_pred EEEECCCcc--cCCHHHHHHHh-CC---eEEEEECCHHHHHHHHhhcCCCCCCcCCCCCcchhhhHHHHHHHHHHHHHHH
Confidence 677655443 23333344444 35 6799999999999999641 0000000 00 000 0112221221
Q ss_pred CCCCcEEEe------------CCCCCHHHHHHHHHHHHHh
Q psy17388 165 PKNPDLILE------------TVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 165 ~~~~~~~Id------------t~~~~~ee~~~~I~~~L~~ 192 (272)
+..++++|+ |++.++++++.+|++.+..
T Consensus 249 Y~~Ad~~V~~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~ 288 (303)
T PLN02199 249 YTNANARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLS 288 (303)
T ss_pred HHhCCEEEecccccccccccccCCCCHHHHHHHHHHHHHH
Confidence 224789998 7899999999999888775
No 42
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.54 E-value=4.7e-14 Score=133.61 Aligned_cols=127 Identities=18% Similarity=0.223 Sum_probs=99.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEE
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIAL 98 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI 98 (272)
..+|.+|+++|+|||||||+|+.+++.. +..+++.|.+.. ++.....++..+.+|..||
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~-----g~~~vn~D~lg~----------------~~~~~~~a~~~L~~G~sVV 424 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPA-----GYKHVNADTLGS----------------TQNCLTACERALDQGKRCA 424 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHc-----CCeEECcHHHHH----------------HHHHHHHHHHHHhCCCcEE
Confidence 3578899999999999999999999876 567788886521 2334455777888999999
Q ss_pred EcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccc--cccccccccCCCCC
Q psy17388 99 CSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKI--KSFTGVSQPYEAPK 166 (272)
Q Consensus 99 ~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~--~~~~~~~~~ye~~~ 166 (272)
+|.++.....|..+.++++.+|+++..||+++|.+++++|+..|.........+ ..+..+.+.|++|.
T Consensus 425 IDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~~~~s~~~vp~~v~~~~~k~fE~Pt 494 (526)
T TIGR01663 425 IDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFRELSDSAHIKIKDMVFNGMKKKFEAPA 494 (526)
T ss_pred EECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhhccCCcccCCCCHHHHHHHHhhCCCCC
Confidence 999999999999999999999999999999999999999997764321111222 12445667788764
No 43
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=99.54 E-value=3.7e-13 Score=121.19 Aligned_cols=145 Identities=17% Similarity=0.227 Sum_probs=98.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHH-HcCCCEEEecCccccccccc--------cCCCCHHHH------------------
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLI-AQGIPAYALDGDNLRNGINA--------NLAFSEEDR------------------ 76 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~-~~g~~~~~ld~D~i~~~l~~--------~~~~~~~~~------------------ 76 (272)
+++|+|+|||||||+++.|++.|. ..|+++.+++.|++...... ...| ...|
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~-k~~R~~i~~~le~~v~a~~~g~ 79 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIPSQW-KQFRQELLKYLEHFLVAVINGS 79 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcHHHH-HHHHHHHHHHHHHHHHHhcCcc
Confidence 468999999999999999999997 57999999999987631110 0001 0011
Q ss_pred -------------HHHHHHH-----------------HHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEE
Q psy17388 77 -------------NENVRRA-----------------AECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEV 126 (272)
Q Consensus 77 -------------~~~~~~i-----------------~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V 126 (272)
...++.+ ..++...+..+..||+|..+....+|..+.++++.++.++.+|
T Consensus 80 ~~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~LsrpllvilDd~fy~ks~Ryel~~LAr~~~~~~~~V 159 (340)
T TIGR03575 80 ELSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSRPLCLVLDDNFYYQSMRYEVYQLARKYSLGFCQL 159 (340)
T ss_pred cccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHhCCCCceecCCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 1111111 0112222245567889999999999999999999999999999
Q ss_pred EEeCCHHHHHHhhhhhhhhhhhhcccc--ccccccccCCCC-------CCCcEEEeCC
Q psy17388 127 FVNTPVEICEQRDVKGHYKKAREGKIK--SFTGVSQPYEAP-------KNPDLILETV 175 (272)
Q Consensus 127 ~L~~~~e~~~~Rl~~r~~~~~r~~~~~--~~~~~~~~ye~~-------~~~~~~Idt~ 175 (272)
|+++|.+++.+|+.+|. ..+. .+..+..+|+.| +.|.++++++
T Consensus 160 ~ld~ple~~l~RN~~R~------~~v~devie~m~~r~E~P~~~~nrWd~pl~~v~~~ 211 (340)
T TIGR03575 160 FLDCPVESCLLRNKQRP------VPLPDETIQLMGRKIEKPNPEKNAWEHNSLVIQSS 211 (340)
T ss_pred EEeCCHHHHHHHHhcCC------CCCCHHHHHHHHHHhcCCCCCCCCCCCCeEEEecC
Confidence 99999999999997652 1111 122334455543 4567888873
No 44
>PRK08233 hypothetical protein; Provisional
Probab=99.54 E-value=1.1e-13 Score=114.14 Aligned_cols=161 Identities=18% Similarity=0.272 Sum_probs=91.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc-------cccccCCCCHHHHHHHHHHHHHHHHHHHhC
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN-------GINANLAFSEEDRNENVRRAAECAKMFAEC 93 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~-------~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 93 (272)
++.+|+|+|+|||||||+|+.|++.++ +..+.+.|.+.... .......+.. ..+..+.+..+.+.+.
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~ 75 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLK--NSKALYFDRYDFDNCPEDICKWIDKGANYSE----WVLTPLIKDIQELIAK 75 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCC--CCceEEECCEEcccCchhhhhhhhccCChhh----hhhHHHHHHHHHHHcC
Confidence 568999999999999999999999984 23455565543211 0111112211 1122222333333333
Q ss_pred C--CeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccc----cccc-cccccCC---
Q psy17388 94 G--FIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKI----KSFT-GVSQPYE--- 163 (272)
Q Consensus 94 g--~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~----~~~~-~~~~~ye--- 163 (272)
. .+||+++... .....+...+ ..+|||++|.+++.+|+.+|.+.......+ ..+. ..+..|.
T Consensus 76 ~~~~~vivd~~~~--~~~~~~~~~~------d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 147 (182)
T PRK08233 76 SNVDYIIVDYPFA--YLNSEMRQFI------DVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLNYARPLYLEAL 147 (182)
T ss_pred CCceEEEEeeehh--hccHHHHHHc------CEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHh
Confidence 3 3566665332 2222333322 378999999999999876664321111111 1111 1122222
Q ss_pred -C-CCCCcEEEeCCCCCHHHHHHHHHHHHHhCCCC
Q psy17388 164 -A-PKNPDLILETVNVPVEKCANSVLDMIAAKGLI 196 (272)
Q Consensus 164 -~-~~~~~~~Idt~~~~~ee~~~~I~~~L~~~~~~ 196 (272)
. +..++++||+ +.+++++.++|.+.|..+.+|
T Consensus 148 ~~~~~~~~~vId~-~~~~e~i~~~i~~~l~~~~~~ 181 (182)
T PRK08233 148 HTVKPNADIVLDG-ALSVEEIINQIEEELYRREVI 181 (182)
T ss_pred hcCccCCeEEEcC-CCCHHHHHHHHHHHHHhCCcc
Confidence 1 2345788886 479999999999999988765
No 45
>PRK00625 shikimate kinase; Provisional
Probab=99.53 E-value=1.5e-14 Score=118.97 Aligned_cols=152 Identities=16% Similarity=0.128 Sum_probs=85.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc-c----c--CCCCHHHHHHHHHHHH-HHHHHHHhCCC
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN-A----N--LAFSEEDRNENVRRAA-ECAKMFAECGF 95 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~-~----~--~~~~~~~~~~~~~~i~-~~~~~~~~~g~ 95 (272)
.|+|+|+|||||||+|+.|++.+ ++.++|.|.+.+... . . ..|. ....+.++... .+.+.+.. +.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l-----~~~~id~D~~I~~~~g~~~~~~i~eif~-~~Ge~~fr~~E~~~l~~l~~-~~ 74 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL-----SLPFFDTDDLIVSNYHGALYSSPKEIYQ-AYGEEGFCREEFLALTSLPV-IP 74 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCCEEEhhHHHHHHhCCCCCCCHHHHHH-HHCHHHHHHHHHHHHHHhcc-CC
Confidence 69999999999999999999999 566788887643211 1 0 0111 11223333332 33344433 44
Q ss_pred eEEEcC-CCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhh--hccccc-cccccccCCCCCCCcEE
Q psy17388 96 IALCSF-VSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAR--EGKIKS-FTGVSQPYEAPKNPDLI 171 (272)
Q Consensus 96 ~VI~d~-~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r--~~~~~~-~~~~~~~ye~~~~~~~~ 171 (272)
.||..+ .... ....++.++..+ .+|||++|++++.+|+.+|.+.... ...+.. +......|+. .++++
T Consensus 75 ~VIs~GGg~~~---~~e~~~~l~~~~---~Vv~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~ll~~R~~~Y~~--~ad~~ 146 (173)
T PRK00625 75 SIVALGGGTLM---IEPSYAHIRNRG---LLVLLSLPIATIYQRLQKRGLPERLKHAPSLEEILSQRIDRMRS--IADYI 146 (173)
T ss_pred eEEECCCCccC---CHHHHHHHhcCC---EEEEEECCHHHHHHHHhcCCCCcccCcHHHHHHHHHHHHHHHHH--HCCEE
Confidence 455443 3221 123333444443 6899999999999999766321100 001111 1111222432 24554
Q ss_pred ------EeCCCCCHHHHHHHHHHHH
Q psy17388 172 ------LETVNVPVEKCANSVLDMI 190 (272)
Q Consensus 172 ------Idt~~~~~ee~~~~I~~~L 190 (272)
+.|++.++.++++.++..|
T Consensus 147 i~~~~~~~~~~~~~~~~~~~~~~~~ 171 (173)
T PRK00625 147 FSLDHVAETSSESLMRACQSFCTLL 171 (173)
T ss_pred EeCCCcccCCCCCHHHHHHHHHHHh
Confidence 5666777888888887765
No 46
>PRK04182 cytidylate kinase; Provisional
Probab=99.53 E-value=1.1e-13 Score=113.88 Aligned_cols=155 Identities=15% Similarity=0.166 Sum_probs=86.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHH-------HHHHHHHHHHHHH-hCC
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNE-------NVRRAAECAKMFA-ECG 94 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~-------~~~~i~~~~~~~~-~~g 94 (272)
++|+|+|.|||||||+|+.|++.+ +..++|.|.+...+....+.+...... ..+.+......+. ..+
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~l-----g~~~id~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKL-----GLKHVSAGEIFRELAKERGMSLEEFNKYAEEDPEIDKEIDRRQLEIAEKED 75 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHc-----CCcEecHHHHHHHHHHHcCCCHHHHHHHhhcCchHHHHHHHHHHHHHhcCC
Confidence 479999999999999999999999 456677554332222111111111000 0011222223333 445
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhh---hhhhhc----cccccccccccCC----
Q psy17388 95 FIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHY---KKAREG----KIKSFTGVSQPYE---- 163 (272)
Q Consensus 95 ~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~---~~~r~~----~~~~~~~~~~~ye---- 163 (272)
.+|+......+ +.+ ..+.++|||++|++++.+|+.+|.. ...... +......+...|.
T Consensus 76 ~~Vi~g~~~~~---------~~~--~~~~~~V~l~a~~e~~~~Rl~~r~~~~~~~a~~~~~~~d~~~~~~~~~~~~~~~~ 144 (180)
T PRK04182 76 NVVLEGRLAGW---------MAK--DYADLKIWLKAPLEVRAERIAEREGISVEEALEETIEREESEAKRYKEYYGIDID 144 (180)
T ss_pred CEEEEEeecce---------Eec--CCCCEEEEEECCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 55554322221 111 1144789999999999999976521 001000 0000000111121
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388 164 APKNPDLILETVNVPVEKCANSVLDMIAAK 193 (272)
Q Consensus 164 ~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~ 193 (272)
.+..++++|||+..+++++++.|.+.+.+.
T Consensus 145 ~~~~~d~~idt~~~~~~~~~~~I~~~~~~~ 174 (180)
T PRK04182 145 DLSIYDLVINTSRWDPEGVFDIILTAIDKL 174 (180)
T ss_pred ccccccEEEECCCCCHHHHHHHHHHHHHHH
Confidence 234678999999999999999999988753
No 47
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.53 E-value=3.3e-14 Score=127.46 Aligned_cols=173 Identities=15% Similarity=0.173 Sum_probs=99.4
Q ss_pred hhhhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHH-----HHHHHHHHH-HHH
Q psy17388 13 LRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEE-----DRNENVRRA-AEC 86 (272)
Q Consensus 13 ~r~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~-----~~~~~~~~i-~~~ 86 (272)
.+..+...++..|+|+|+|||||||+++.|++.| |++ ++|.|....... +.+.. .....++.+ .+.
T Consensus 124 ~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~L---g~~--~id~D~~i~~~~---G~~i~ei~~~~G~~~fr~~e~~~ 195 (309)
T PRK08154 124 LGAGRRAARRRRIALIGLRGAGKSTLGRMLAARL---GVP--FVELNREIEREA---GLSVSEIFALYGQEGYRRLERRA 195 (309)
T ss_pred HhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHc---CCC--EEeHHHHHHHHh---CCCHHHHHHHHCHHHHHHHHHHH
Confidence 3444455678899999999999999999999999 555 456665433211 11111 112223332 222
Q ss_pred HHHH-HhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcc---ccccccccccC
Q psy17388 87 AKMF-AECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGK---IKSFTGVSQPY 162 (272)
Q Consensus 87 ~~~~-~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~---~~~~~~~~~~y 162 (272)
...+ .+.+..||..+.... .....+..+.. .+++|||++|++++.+|+.++...+..... ...+..+....
T Consensus 196 l~~ll~~~~~~VI~~Ggg~v-~~~~~~~~l~~----~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R 270 (309)
T PRK08154 196 LERLIAEHEEMVLATGGGIV-SEPATFDLLLS----HCYTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRRILASR 270 (309)
T ss_pred HHHHHhhCCCEEEECCCchh-CCHHHHHHHHh----CCEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHH
Confidence 3333 334556666544321 11111112222 347899999999999999654211100000 01111111111
Q ss_pred CC-CCCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCCC
Q psy17388 163 EA-PKNPDLILETVNVPVEKCANSVLDMIAAKGLIPA 198 (272)
Q Consensus 163 e~-~~~~~~~Idt~~~~~ee~~~~I~~~L~~~~~~~~ 198 (272)
.+ ...++++|+|+..++++++++|...+...-++|.
T Consensus 271 ~~~y~~ad~~I~t~~~s~ee~~~~I~~~l~~~~~~~~ 307 (309)
T PRK08154 271 EPLYARADAVVDTSGLTVAQSLARLRELVRPALGLPA 307 (309)
T ss_pred HHHHHhCCEEEECCCCCHHHHHHHHHHHHHHHhccCC
Confidence 11 1247899999999999999999999988777774
No 48
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.51 E-value=7.5e-14 Score=114.43 Aligned_cols=156 Identities=15% Similarity=0.232 Sum_probs=89.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccC--CCCHHHHHHHHHHH-HHHHHHHHhCCCeEEE
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANL--AFSEEDRNENVRRA-AECAKMFAECGFIALC 99 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~--~~~~~~~~~~~~~i-~~~~~~~~~~g~~VI~ 99 (272)
..|+|+|++||||||+|+.|++++ +..++|.|.+.+...... .+......+.++.. .++.+. +..+..||.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~l-----g~~~~d~D~~~~~~~g~~~~~~~~~~g~~~~~~~e~~~~~~-~~~~~~vi~ 76 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQAL-----GYRFVDTDQWLQSTSNMTVAEIVEREGWAGFRARESAALEA-VTAPSTVIA 76 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh-----CCCEEEccHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHH-hcCCCeEEE
Confidence 358899999999999999999999 456789888765332110 01111112223222 223333 334555665
Q ss_pred cCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhh---c-c----ccc-cccccccCCCCCCCcE
Q psy17388 100 SFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKARE---G-K----IKS-FTGVSQPYEAPKNPDL 170 (272)
Q Consensus 100 d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~---~-~----~~~-~~~~~~~ye~~~~~~~ 170 (272)
.+... ..+...+.+++..+ ++|||++|++++.+|+.++.....|. + . ... +......|.. .+++
T Consensus 77 ~ggg~--vl~~~~~~~l~~~~---~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~r~~~y~~--~a~~ 149 (171)
T PRK03731 77 TGGGI--ILTEENRHFMRNNG---IVIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEVAEVLAEREALYRE--VAHH 149 (171)
T ss_pred CCCCc--cCCHHHHHHHHhCC---EEEEEECCHHHHHHHHccccccccCCcCCCCChHHHHHHHHHHHHHHHHH--hCCE
Confidence 43322 11223344445444 68999999999999996542111010 0 0 000 1111122322 3468
Q ss_pred EEeCCCCCHHHHHHHHHHHHHh
Q psy17388 171 ILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 171 ~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
+||++ .++++++++|.+.+..
T Consensus 150 ~Id~~-~~~e~v~~~i~~~l~~ 170 (171)
T PRK03731 150 IIDAT-QPPSQVVSEILSALAQ 170 (171)
T ss_pred EEcCC-CCHHHHHHHHHHHHhc
Confidence 99976 7999999999998863
No 49
>PRK03839 putative kinase; Provisional
Probab=99.51 E-value=1.7e-13 Score=113.38 Aligned_cols=155 Identities=13% Similarity=0.099 Sum_probs=88.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEcCCC
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIALCSFVS 103 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI~d~~~ 103 (272)
.|+|+|+|||||||+|+.|++++ ++.++|.|.+.........+... ....++.+...+..... +..+|.++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~-----~~~~id~d~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~-~~~vIidG~~ 74 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL-----GYEYVDLTEFALKKGIGEEKDDE-MEIDFDKLAYFIEEEFK-EKNVVLDGHL 74 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCcEEehhhhhhhcCCcccCChh-hhcCHHHHHHHHHHhcc-CCCEEEEecc
Confidence 69999999999999999999999 55667777654322111112211 12223333332222222 3345555422
Q ss_pred CcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhc-cc-ccccc--ccccCCCCCCCcEEEeCCCCCH
Q psy17388 104 PTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREG-KI-KSFTG--VSQPYEAPKNPDLILETVNVPV 179 (272)
Q Consensus 104 ~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~-~~-~~~~~--~~~~ye~~~~~~~~Idt~~~~~ 179 (272)
. . + .. +..+|||+++++++.+|+.+|...+.... .. ..+.. ....|.. ..+.+.||+++.++
T Consensus 75 ~------~---l-~~---~~~vi~L~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~~~~~~-r~~~~~Id~~~~s~ 140 (180)
T PRK03839 75 S------H---L-LP---VDYVIVLRAHPKIIKERLKERGYSKKKILENVEAELVDVCLCEALEE-KEKVIEVDTTGKTP 140 (180)
T ss_pred c------c---c-cC---CCEEEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh-cCCEEEEECCCCCH
Confidence 1 1 1 11 23679999999999999976532111100 00 00100 0011222 23457899988899
Q ss_pred HHHHHHHHHHHHhCCCCCCc
Q psy17388 180 EKCANSVLDMIAAKGLIPAR 199 (272)
Q Consensus 180 ee~~~~I~~~L~~~~~~~~~ 199 (272)
++++++|.+.+.....-+.+
T Consensus 141 eev~~~I~~~l~~~~~~~~~ 160 (180)
T PRK03839 141 EEVVEEILELIKSGKKRKVG 160 (180)
T ss_pred HHHHHHHHHHHhcCCCCCCC
Confidence 99999999999876444433
No 50
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.49 E-value=2.7e-13 Score=130.00 Aligned_cols=163 Identities=15% Similarity=0.142 Sum_probs=100.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc---ccCCCCHHHHHHHHHHH-HHHHHHHHhCCCe
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN---ANLAFSEEDRNENVRRA-AECAKMFAECGFI 96 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~---~~~~~~~~~~~~~~~~i-~~~~~~~~~~g~~ 96 (272)
+...|+|+|+|||||||+++.|++.| +..++|.|...+... ....|. ...++.++.+ .++++.+......
T Consensus 5 ~~~~i~LiG~~GaGKttvg~~LA~~L-----~~~fiD~D~~ie~~~g~si~eif~-~~Ge~~FR~~E~~~l~~~~~~~~~ 78 (542)
T PRK14021 5 RRPQAVIIGMMGAGKTRVGKEVAQMM-----RLPFADADVEIEREIGMSIPSYFE-EYGEPAFREVEADVVADMLEDFDG 78 (542)
T ss_pred CCccEEEECCCCCCHHHHHHHHHHHh-----CCCEEEchHHHHHHHCcCHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCe
Confidence 44579999999999999999999999 566788887544222 111122 2334445544 3445555544445
Q ss_pred EEEcCCC-C-cHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhc----cccccccc-cccCCCCCCCc
Q psy17388 97 ALCSFVS-P-TAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREG----KIKSFTGV-SQPYEAPKNPD 169 (272)
Q Consensus 97 VI~d~~~-~-~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~----~~~~~~~~-~~~ye~~~~~~ 169 (272)
||..+.. . ....+..+.+++++.| .+|||++|++++.+|+..+..+..-.+ ++..+... ...|+ ..++
T Consensus 79 VIs~GGG~v~~~~n~~~L~~~~~~~g---~vv~L~~~~~~l~~Rl~~~~~RPll~~~~~~~~~~l~~~R~~~Y~--~~Ad 153 (542)
T PRK14021 79 IFSLGGGAPMTPSTQHALASYIAHGG---RVVYLDADPKEAMERANRGGGRPMLNGDANKRWKKLFKQRDPVFR--QVAN 153 (542)
T ss_pred EEECCCchhCCHHHHHHHHHHHhcCC---EEEEEECCHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHHH--hhCC
Confidence 6644322 2 2344555555556655 779999999999999853210000000 11111111 12232 2478
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHhCC
Q psy17388 170 LILETVNVPVEKCANSVLDMIAAKG 194 (272)
Q Consensus 170 ~~Idt~~~~~ee~~~~I~~~L~~~~ 194 (272)
++|++++.++++++++|++.+....
T Consensus 154 ~~i~~~~~~~~~~~~~i~~~~~~~~ 178 (542)
T PRK14021 154 VHVHTRGLTPQAAAKKLIDMVAERT 178 (542)
T ss_pred EEEECCCCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999998643
No 51
>PRK13973 thymidylate kinase; Provisional
Probab=99.49 E-value=1.2e-12 Score=111.30 Aligned_cols=171 Identities=14% Similarity=0.166 Sum_probs=98.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec-------Ccccccccccc--CCCCHHHHHH-----HHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD-------GDNLRNGINAN--LAFSEEDRNE-----NVRRAAEC 86 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld-------~D~i~~~l~~~--~~~~~~~~~~-----~~~~i~~~ 86 (272)
+|++|+|.|.+||||||+++.|++.|...|+++.+.. ++.+++.+..+ ..+++....- ....+...
T Consensus 2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a~r~~~~~~~ 81 (213)
T PRK13973 2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAAARDDHVEEV 81 (213)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999998888877663 22233322211 1122211100 01122234
Q ss_pred HHHHHhCCCeEEEcCCCCc------------HHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhh--hhhc--
Q psy17388 87 AKMFAECGFIALCSFVSPT------------AAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKK--AREG-- 150 (272)
Q Consensus 87 ~~~~~~~g~~VI~d~~~~~------------~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~--~r~~-- 150 (272)
+...+..|.+||+|..... ..+...+.........|.++|||++|++++.+|+.+|.... .+..
T Consensus 82 i~~~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~~~~~e~~ 161 (213)
T PRK13973 82 IRPALARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSDTPDRFEKE 161 (213)
T ss_pred HHHHHHCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCCccCchhhc
Confidence 5556778999998853311 11223333222222458899999999999999987663110 0100
Q ss_pred cccccccccccCCCC----CCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388 151 KIKSFTGVSQPYEAP----KNPDLILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 151 ~~~~~~~~~~~ye~~----~~~~~~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
....+......|... ...-++||+ +.+++++.++|.+.+..
T Consensus 162 ~~~~~~~~~~~y~~l~~~~~~~~~~Ida-~~~~e~V~~~I~~~i~~ 206 (213)
T PRK13973 162 DLAFHEKRREAFLQIAAQEPERCVVIDA-TASPEAVAAEIWAAVDQ 206 (213)
T ss_pred hHHHHHHHHHHHHHHHHhCCCcEEEEcC-CCCHHHHHHHHHHHHHH
Confidence 001111122222211 111245665 67999999999998875
No 52
>PLN02924 thymidylate kinase
Probab=99.48 E-value=1e-12 Score=112.20 Aligned_cols=165 Identities=12% Similarity=0.186 Sum_probs=100.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc--------cccccccccCCCCHH--------HHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD--------NLRNGINANLAFSEE--------DRNENVRRA 83 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D--------~i~~~l~~~~~~~~~--------~~~~~~~~i 83 (272)
++|++|+|.|.+||||||+++.|++.|..+|+.+.++..- .+++.+......++. +|.+.
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ep~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~---- 89 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFPDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEK---- 89 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeCCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH----
Confidence 5689999999999999999999999999888877554311 122222111112211 12111
Q ss_pred HHHHHHHHhCCCeEEEcCCCCcH--------HHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcccccc
Q psy17388 84 AECAKMFAECGFIALCSFVSPTA--------AARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSF 155 (272)
Q Consensus 84 ~~~~~~~~~~g~~VI~d~~~~~~--------~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~ 155 (272)
...+...++.|.+||+|...... ...+++..+......|.++|||++|++++.+|...+. .+......+
T Consensus 90 ~~~I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~~~~---~~~E~~~~~ 166 (220)
T PLN02924 90 RSLMERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGGYGG---ERYEKLEFQ 166 (220)
T ss_pred HHHHHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCc---cccccHHHH
Confidence 12345566789999998644311 0123334443333458899999999999999964220 111111122
Q ss_pred ccccccCCCCCCCcE-EEeCCCCCHHHHHHHHHHHHHh
Q psy17388 156 TGVSQPYEAPKNPDL-ILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 156 ~~~~~~ye~~~~~~~-~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
..++..|.......+ +||. +.+++++.++|.+.+..
T Consensus 167 ~rv~~~Y~~la~~~~~vIDa-~~sieeV~~~I~~~I~~ 203 (220)
T PLN02924 167 KKVAKRFQTLRDSSWKIIDA-SQSIEEVEKKIREVVLD 203 (220)
T ss_pred HHHHHHHHHHhhcCEEEECC-CCCHHHHHHHHHHHHHH
Confidence 334555543322344 4554 68999999999998875
No 53
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.46 E-value=1.5e-12 Score=109.42 Aligned_cols=171 Identities=14% Similarity=0.154 Sum_probs=93.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc-------cccccccc-cCCCCHHHH-----HHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD-------NLRNGINA-NLAFSEEDR-----NENVRRAAECA 87 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D-------~i~~~l~~-~~~~~~~~~-----~~~~~~i~~~~ 87 (272)
++++|+|.|++||||||+++.|++.|...|.++.+...- .++..+.. ...+..... ...+....+..
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~i 81 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFTREPGGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQHLEEVI 81 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEeeCCCCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999998777665543211 11111111 011111110 00111222233
Q ss_pred HHHHhCCCeEEEcCCCCc------------HHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhh-hhhhccccc
Q psy17388 88 KMFAECGFIALCSFVSPT------------AAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYK-KAREGKIKS 154 (272)
Q Consensus 88 ~~~~~~g~~VI~d~~~~~------------~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~-~~r~~~~~~ 154 (272)
...+..|.+||+|..... ..+...+...+.....+.++|||++|++++.+|+.+|... .........
T Consensus 82 ~~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~~~~ 161 (205)
T PRK00698 82 KPALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRARGELDRIEQEGLDF 161 (205)
T ss_pred HHHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhhhhHHH
Confidence 444567889998832111 1122222223322245779999999999999999766310 000000011
Q ss_pred cccccccCCCC----CCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388 155 FTGVSQPYEAP----KNPDLILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 155 ~~~~~~~ye~~----~~~~~~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
+..+...|+.. ....++||++ .+++++.++|.+.+.+
T Consensus 162 ~~~~~~~y~~~~~~~~~~~~~Id~~-~~~e~v~~~i~~~i~~ 202 (205)
T PRK00698 162 FERVREGYLELAEKEPERIVVIDAS-QSLEEVHEDILAVIKA 202 (205)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeCC-CCHHHHHHHHHHHHHH
Confidence 11222233321 1224677764 6899999999988865
No 54
>PRK14532 adenylate kinase; Provisional
Probab=99.45 E-value=7.6e-13 Score=110.15 Aligned_cols=160 Identities=17% Similarity=0.109 Sum_probs=89.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc-cccccccCCCCHHHH----------HHHHHH-HHHHHHHHH
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL-RNGINANLAFSEEDR----------NENVRR-AAECAKMFA 91 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i-~~~l~~~~~~~~~~~----------~~~~~~-i~~~~~~~~ 91 (272)
.|+|.|+|||||||+|+.|++.+ ++.+++.+++ ++.+..+.......+ .+.... +.+.... .
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~-----g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~ 75 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER-----GMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPE-A 75 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-----CCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhC-c
Confidence 58999999999999999999998 6778888544 443221100000000 011111 1111111 1
Q ss_pred hCCCeEEEcCCCCcHHHHHHHHHHHHhCCCc-eEEEEEeCCHHHHHHhhhhhhhhhhhhccc-ccc-ccc----------
Q psy17388 92 ECGFIALCSFVSPTAAARDRAREIHRNANLE-FFEVFVNTPVEICEQRDVKGHYKKAREGKI-KSF-TGV---------- 158 (272)
Q Consensus 92 ~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~-~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~-~~~-~~~---------- 158 (272)
..+..+|.|+.......++.+..++...|.. ..+|||++|++++.+|+.+|.....|.... ..+ ..+
T Consensus 76 ~~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~~r~dd~~~~~~~Rl~~~~~~~~~i 155 (188)
T PRK14532 76 EAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQGRPDDNPEVFVTRLDAYNAQTAPL 155 (188)
T ss_pred CccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 2345566675444455666666666666543 378999999999999997663211111100 000 011
Q ss_pred cccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHH
Q psy17388 159 SQPYEAPKNPDLILETVNVPVEKCANSVLDMIA 191 (272)
Q Consensus 159 ~~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~ 191 (272)
...|... .--+.||. +.+++++.++|.+.|.
T Consensus 156 ~~~y~~~-~~~~~id~-~~~~eev~~~I~~~l~ 186 (188)
T PRK14532 156 LPYYAGQ-GKLTEVDG-MGSIEAVAASIDAALE 186 (188)
T ss_pred HHHHHhc-CCEEEEEC-CCCHHHHHHHHHHHHh
Confidence 1223321 12245554 5799999999998884
No 55
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.45 E-value=1e-12 Score=107.23 Aligned_cols=150 Identities=17% Similarity=0.204 Sum_probs=85.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHH---H----HHHHHHHHHHHHHHH-hCC
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEED---R----NENVRRAAECAKMFA-ECG 94 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~---~----~~~~~~i~~~~~~~~-~~g 94 (272)
++|+|+|.+||||||+|+.|++.+ ++.+++.|.+...+....+.+... . ......+......+. ..+
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~l-----g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 75 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKL-----SLKLISAGDIFRELAAKMGLDLIEFLNYAEENPEIDKKIDRRIHEIALKEK 75 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHc-----CCceecHHHHHHHHHHHcCCCHHHHHHHHhcCcHHHHHHHHHHHHHHhcCC
Confidence 479999999999999999999998 566788765443332222222111 0 011112223333343 344
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhh---hhhhhccccccc-----cccccC----
Q psy17388 95 FIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHY---KKAREGKIKSFT-----GVSQPY---- 162 (272)
Q Consensus 95 ~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~---~~~r~~~~~~~~-----~~~~~y---- 162 (272)
.+||......+ . .. +.+.+.|||+||.+++.+|+.+|.. ...+. .+.... .....|
T Consensus 76 ~~Vi~g~~~~~------~---~~--~~~d~~v~v~a~~~~r~~R~~~R~~~s~~~a~~-~~~~~d~~~~~~~~~~~~~~~ 143 (171)
T TIGR02173 76 NVVLESRLAGW------I---VR--EYADVKIWLKAPLEVRARRIAKREGKSLTVARS-ETIEREESEKRRYLKFYGIDI 143 (171)
T ss_pred CEEEEecccce------e---ec--CCcCEEEEEECCHHHHHHHHHHccCCCHHHHHH-HHHHHHHHHHHHHHHHhCCCc
Confidence 45553322221 0 11 1123679999999999999976621 11110 000000 011111
Q ss_pred CCCCCCcEEEeCCCCCHHHHHHHHHHHH
Q psy17388 163 EAPKNPDLILETVNVPVEKCANSVLDMI 190 (272)
Q Consensus 163 e~~~~~~~~Idt~~~~~ee~~~~I~~~L 190 (272)
..+...|++|||+..++++ ++.|.+++
T Consensus 144 ~~~~~ydl~i~t~~~~~~~-~~~i~~~~ 170 (171)
T TIGR02173 144 DDLSIYDLVINTSNWDPNN-VDIILDAL 170 (171)
T ss_pred cccccccEEEECCCCCHHH-HHHHHHHh
Confidence 2235668999999999999 99998875
No 56
>PRK14527 adenylate kinase; Provisional
Probab=99.44 E-value=1.8e-12 Score=108.24 Aligned_cols=163 Identities=13% Similarity=0.127 Sum_probs=94.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc-cccccccCCCCHHHHHHHH--------HHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL-RNGINANLAFSEEDRNENV--------RRAAECAKMF 90 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i-~~~l~~~~~~~~~~~~~~~--------~~i~~~~~~~ 90 (272)
.+|.+|+|.|+|||||||+|+.|++++ ++.+++.+++ +.....+..+....+ ..+ ..+..++...
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~-----~~~~is~gd~~r~~~~~~~~~~~~~~-~~~~~g~~~p~~~~~~l~~~~ 77 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQEL-----GLKKLSTGDILRDHVARGTELGQRAK-PIMEAGDLVPDELILALIRDE 77 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh-----CCCCCCccHHHHHHHhcCcHHHHHHH-HHHHcCCCCcHHHHHHHHHHH
Confidence 568899999999999999999999998 5666776554 332221111110000 000 1122233332
Q ss_pred HhC--CCeEEEcCCCCcHHHHHHHHHHHHhCCCce-EEEEEeCCHHHHHHhhhhhhhhhhhhccccc-ccc---------
Q psy17388 91 AEC--GFIALCSFVSPTAAARDRAREIHRNANLEF-FEVFVNTPVEICEQRDVKGHYKKAREGKIKS-FTG--------- 157 (272)
Q Consensus 91 ~~~--g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~-~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~-~~~--------- 157 (272)
+.. +..+|.|+.......++.+..++...|.++ .+|||+||.+++.+|+.+|.....|...... +..
T Consensus 78 l~~~~~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd~~~~~~~R~~~y~~~~ 157 (191)
T PRK14527 78 LAGMEPVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEGRSDDNEETVRRRQQVYREQT 157 (191)
T ss_pred HhcCCCCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCCCCCCCHHHHHHHHHHHHHHh
Confidence 222 345777754334556667777776666555 4689999999999999877432222221110 000
Q ss_pred --ccccCCCCCCCcEEEeCCCCCHHHHHHHHHHHH
Q psy17388 158 --VSQPYEAPKNPDLILETVNVPVEKCANSVLDMI 190 (272)
Q Consensus 158 --~~~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L 190 (272)
+.+.|... .--+.||. +.+++++.++|...|
T Consensus 158 ~~v~~~y~~~-~~~~~id~-~~~~~~v~~~i~~~l 190 (191)
T PRK14527 158 QPLVDYYEAR-GHLKRVDG-LGTPDEVYARILKAL 190 (191)
T ss_pred HHHHHHHHhc-CCEEEEEC-CCCHHHHHHHHHHhh
Confidence 11122221 11256774 569999999988765
No 57
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=99.44 E-value=1e-13 Score=112.41 Aligned_cols=147 Identities=18% Similarity=0.258 Sum_probs=84.4
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc---cCCCCHHHHHHHHHHH-HHHHHHHHhCCCeEEEc-CCCCc
Q psy17388 31 SGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA---NLAFSEEDRNENVRRA-AECAKMFAECGFIALCS-FVSPT 105 (272)
Q Consensus 31 ~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~---~~~~~~~~~~~~~~~i-~~~~~~~~~~g~~VI~d-~~~~~ 105 (272)
|||||||+++.||+.| ++.++|.|.+.+.... ...|... ..+.++.. .++++.+......||+. +...
T Consensus 1 ~GsGKStvg~~lA~~L-----~~~fiD~D~~i~~~~g~si~~i~~~~-G~~~fr~~E~~~l~~l~~~~~~VIa~GGG~~- 73 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRL-----GRPFIDLDDEIEERTGMSISEIFAEE-GEEAFRELESEALRELLKENNCVIACGGGIV- 73 (158)
T ss_dssp TTSSHHHHHHHHHHHH-----TSEEEEHHHHHHHHHTSHHHHHHHHH-HHHHHHHHHHHHHHHHHCSSSEEEEE-TTGG-
T ss_pred CCCcHHHHHHHHHHHh-----CCCccccCHHHHHHhCCcHHHHHHcC-ChHHHHHHHHHHHHHHhccCcEEEeCCCCCc-
Confidence 7999999999999999 6778999877543221 1112222 22333333 45566666664555543 3332
Q ss_pred HHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcccc------ccccccccCCCCCCCcEEEeCCCCCH
Q psy17388 106 AAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIK------SFTGVSQPYEAPKNPDLILETVNVPV 179 (272)
Q Consensus 106 ~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~------~~~~~~~~ye~~~~~~~~Idt~~~~~ 179 (272)
.....+++++..| .+|||+++++++.+|+..+..+..-.+... .+......|+. .++++++++..++
T Consensus 74 --~~~~~~~~L~~~g---~vI~L~~~~~~l~~Rl~~~~~Rp~l~~~~~~~~~~~~~~~R~~~Y~~--~a~~~v~~~~~~~ 146 (158)
T PF01202_consen 74 --LKEENRELLKENG---LVIYLDADPEELAERLRARDNRPLLKGKMEHEEILELLFEREPLYEQ--AADIVVDTDGSPP 146 (158)
T ss_dssp --GSHHHHHHHHHHS---EEEEEE--HHHHHHHHHHHCTSGGTCSHHHHHHHHHHHHHHHHHHHH--HSSEEEETSSCHH
T ss_pred --CcHHHHHHHHhCC---EEEEEeCCHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHHHHh--cCeEEEeCCCCCH
Confidence 2223334444434 789999999999999954421000000000 00011122332 3579999988888
Q ss_pred HHHHHHHHHHHH
Q psy17388 180 EKCANSVLDMIA 191 (272)
Q Consensus 180 ee~~~~I~~~L~ 191 (272)
++++++|++.|+
T Consensus 147 ~~i~~~i~~~l~ 158 (158)
T PF01202_consen 147 EEIAEEILEFLK 158 (158)
T ss_dssp HHHHHHHHHHH-
T ss_pred HHHHHHHHHHhC
Confidence 999999999874
No 58
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.44 E-value=2.4e-13 Score=109.16 Aligned_cols=140 Identities=17% Similarity=0.196 Sum_probs=79.6
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccccc-C-CCCHHHHHHHHHHH-HHHHHHHHhCCCeEEEcC
Q psy17388 25 LLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINAN-L-AFSEEDRNENVRRA-AECAKMFAECGFIALCSF 101 (272)
Q Consensus 25 I~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~-~-~~~~~~~~~~~~~i-~~~~~~~~~~g~~VI~d~ 101 (272)
|+|+|+|||||||+|+.|++.+ ++.++|.|.+....... . .+........++.. .+....+...+..||..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l-----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~vi~~g 76 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL-----GLPFVDLDELIEQRAGMSIPEIFAEEGEEGFRELEREVLLLLLTKENAVIATG 76 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh-----CCCEEEchHHHHHHcCCCHHHHHHHHCHHHHHHHHHHHHHHHhccCCcEEECC
Confidence 8999999999999999999999 55678888775543321 0 01111112222222 334455555566666543
Q ss_pred CCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcccccc--cccc-------ccCCCCCCCcEEE
Q psy17388 102 VSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSF--TGVS-------QPYEAPKNPDLIL 172 (272)
Q Consensus 102 ~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~--~~~~-------~~ye~~~~~~~~I 172 (272)
.... ..... ++.+... .++|||++|.+++.+|+..|. .| ...... ..+. ..|. ..++++|
T Consensus 77 ~~~i-~~~~~-~~~~~~~---~~~i~l~~~~e~~~~R~~~r~---~r-~~~~~~~~~~~~~~~~~r~~~Y~--~~ad~~i 145 (154)
T cd00464 77 GGAV-LREEN-RRLLLEN---GIVVWLDASPEELLERLARDK---TR-PLLQDEDPERLRELLEEREPLYR--EVADLTI 145 (154)
T ss_pred CCcc-CcHHH-HHHHHcC---CeEEEEeCCHHHHHHHhccCC---CC-CCCCCCCHHHHHHHHHHHHHHHH--HhCcEEE
Confidence 2211 11111 2333333 378999999999999996542 01 111110 0111 1222 2478999
Q ss_pred eCCCCCHH
Q psy17388 173 ETVNVPVE 180 (272)
Q Consensus 173 dt~~~~~e 180 (272)
+|++++++
T Consensus 146 ~~~~~~~~ 153 (154)
T cd00464 146 DTDELSPE 153 (154)
T ss_pred ECCCCCCC
Confidence 99988875
No 59
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=99.43 E-value=2.7e-12 Score=108.24 Aligned_cols=173 Identities=17% Similarity=0.255 Sum_probs=103.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc-------ccccccccc-CCCCHHHHH-----HHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD-------NLRNGINAN-LAFSEEDRN-----ENVRRAAEC 86 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D-------~i~~~l~~~-~~~~~~~~~-----~~~~~i~~~ 86 (272)
+++++|+|.|..||||||+++.|++.|..+|+++.+...- .+++.+... ..+++.... ...+.+.+.
T Consensus 1 ~~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~~~ 80 (208)
T COG0125 1 MKGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLEEV 80 (208)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999877665421 122222211 223322111 111223455
Q ss_pred HHHHHhCCCeEEEcCCCCcH-HH--------HHHHHH---HHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhh--hccc
Q psy17388 87 AKMFAECGFIALCSFVSPTA-AA--------RDRARE---IHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAR--EGKI 152 (272)
Q Consensus 87 ~~~~~~~g~~VI~d~~~~~~-~~--------r~~~~~---~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r--~~~~ 152 (272)
....+..|.+||+|...... .+ .+.+.. .+...-.|.+++||++|+++..+|..+|.....+ ....
T Consensus 81 i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~~~r~E~~~~ 160 (208)
T COG0125 81 IKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGELRDRFEKEDD 160 (208)
T ss_pred HHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCccchhhhHHH
Confidence 66677889999998432210 11 122222 2322125889999999999999999766321111 1111
Q ss_pred cccccccccCCCC--CCC--cEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388 153 KSFTGVSQPYEAP--KNP--DLILETVNVPVEKCANSVLDMIAAK 193 (272)
Q Consensus 153 ~~~~~~~~~ye~~--~~~--~~~Idt~~~~~ee~~~~I~~~L~~~ 193 (272)
..+..++..|..- ..+ -++||. +.+++++.+.|.+.+...
T Consensus 161 ~f~~kvr~~Y~~la~~~~~r~~vIda-~~~~e~v~~~i~~~l~~~ 204 (208)
T COG0125 161 EFLEKVREGYLELAAKFPERIIVIDA-SRPLEEVHEEILKILKER 204 (208)
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEEEC-CCCHHHHHHHHHHHHHHh
Confidence 1233345555431 122 356775 568999999999988764
No 60
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.43 E-value=7.7e-13 Score=109.47 Aligned_cols=159 Identities=18% Similarity=0.125 Sum_probs=89.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC-ccccccccccCCCCHHHHHHHHH--------HHHHHHHHHH-h-
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG-DNLRNGINANLAFSEEDRNENVR--------RAAECAKMFA-E- 92 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~-D~i~~~l~~~~~~~~~~~~~~~~--------~i~~~~~~~~-~- 92 (272)
+|+|+|+|||||||+|+.|++++ ++.+++. |.+++.+..+...... -...+. .+..+....+ .
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~-----~~~~is~~d~lr~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~ll~~~~~~~ 74 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF-----GFTHLSAGDLLRAEIKSGSENGEL-IESMIKNGKIVPSEVTVKLLKNAIQAD 74 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc-----CCeEEECChHHHHHHhcCChHHHH-HHHHHHCCCcCCHHHHHHHHHHHHhcc
Confidence 58999999999999999999999 6778886 5555443321111000 000000 0111222222 1
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcc-ccccccc-----------cc
Q psy17388 93 CGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGK-IKSFTGV-----------SQ 160 (272)
Q Consensus 93 ~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~-~~~~~~~-----------~~ 160 (272)
.+..+|.|+..........+..++.....+..+|||++|.+++.+|+.+|.....+... .+.+... ..
T Consensus 75 ~~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~y~~~~~~i~~ 154 (183)
T TIGR01359 75 GSKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQSSGRVDDNIESIKKRFRTYNEQTLPVIE 154 (183)
T ss_pred CCCcEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 14567777654444556666655543223556899999999999999776422111111 0111110 11
Q ss_pred cCCCCCCCcEEEeCCCCCHHHHHHHHHHHH
Q psy17388 161 PYEAPKNPDLILETVNVPVEKCANSVLDMI 190 (272)
Q Consensus 161 ~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L 190 (272)
.|... ..-+.||++ .+++++.++|.+.|
T Consensus 155 ~~~~~-~~~~~Id~~-~~~~~v~~~i~~~l 182 (183)
T TIGR01359 155 HYENK-GKVKEINAE-GSVEEVFEDVEKIF 182 (183)
T ss_pred HHHhC-CCEEEEECC-CCHHHHHHHHHHHh
Confidence 12211 112577865 68999999998776
No 61
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.43 E-value=2.7e-12 Score=107.04 Aligned_cols=168 Identities=15% Similarity=0.174 Sum_probs=93.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc-------cccccccccC--CCCHHHHHH-----HHHHHHHHHH
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD-------NLRNGINANL--AFSEEDRNE-----NVRRAAECAK 88 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D-------~i~~~l~~~~--~~~~~~~~~-----~~~~i~~~~~ 88 (272)
++|+|.|++||||||+++.|++.+...|+.+..+... .++..+.... ......... ......+...
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 80 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQHVEEVIK 80 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999998888777655321 1111111110 011110000 0111122233
Q ss_pred HHHhCCCeEEEcCCCCc------------HHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhh-hcccccc
Q psy17388 89 MFAECGFIALCSFVSPT------------AAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAR-EGKIKSF 155 (272)
Q Consensus 89 ~~~~~g~~VI~d~~~~~------------~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r-~~~~~~~ 155 (272)
.....|..||+|..... ......+.........+..+|||++|++++.+|+.+|...... ......+
T Consensus 81 ~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~ 160 (200)
T cd01672 81 PALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARIEARGRDDRDEQEGLEFH 160 (200)
T ss_pred HHHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhhhhHHHH
Confidence 34567889998832210 1233344444443345778999999999999999766321111 0001111
Q ss_pred ccccccCCCC----CCCcEEEeCCCCCHHHHHHHHHHHHH
Q psy17388 156 TGVSQPYEAP----KNPDLILETVNVPVEKCANSVLDMIA 191 (272)
Q Consensus 156 ~~~~~~ye~~----~~~~~~Idt~~~~~ee~~~~I~~~L~ 191 (272)
..+...|+.. ....++||+ +.+++++.++|.+.|.
T Consensus 161 ~~~~~~y~~~~~~~~~~~~~id~-~~~~e~i~~~i~~~i~ 199 (200)
T cd01672 161 ERVREGYLELAAQEPERIIVIDA-SQPLEEVLAEILKAIL 199 (200)
T ss_pred HHHHHHHHHHHHhCCCeEEEEeC-CCCHHHHHHHHHHHHh
Confidence 1223333321 123467776 4689999999998875
No 62
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.41 E-value=5.6e-13 Score=125.86 Aligned_cols=166 Identities=13% Similarity=0.173 Sum_probs=92.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc-----ccCCCCHHHHHHHHHHHHHHHHHHH---
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN-----ANLAFSEEDRNENVRRAAECAKMFA--- 91 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~-----~~~~~~~~~~~~~~~~i~~~~~~~~--- 91 (272)
.+|.+|+|.|++||||||+|+.|++.| ++.++|++.+.+.+. .+..+.+. ......+..+...+.
T Consensus 282 ~~~~ii~i~G~sgsGKst~a~~la~~l-----~~~~~d~g~~YR~~a~~~l~~~~~~~~~--~~l~~l~~~l~~~~~~~~ 354 (512)
T PRK13477 282 KRQPIIAIDGPAGAGKSTVTRAVAKKL-----GLLYLDTGAMYRAVTWLVLQEGIDPQDE--EALAELLSDLKIELKPSS 354 (512)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc-----CCeEecCCceehHHHHHHHHcCcCCcCH--HHHHHHHhcCCeeeccCC
Confidence 367899999999999999999999999 678899888766432 12222221 111111100000000
Q ss_pred hCCCeEEEc------------------CCCCcHHHHHHHHHHHH----hCC--------------CceEEEEEeCCHHHH
Q psy17388 92 ECGFIALCS------------------FVSPTAAARDRAREIHR----NAN--------------LEFFEVFVNTPVEIC 135 (272)
Q Consensus 92 ~~g~~VI~d------------------~~~~~~~~r~~~~~~~~----~~g--------------~~~~~V~L~~~~e~~ 135 (272)
..+..|.++ .++.....|+.+.+..+ ..| -..+.|||+||++++
T Consensus 355 ~~~~~i~~~~~dv~~~iRs~eV~~~vS~ia~~p~VR~~l~~~qr~~~~~~~iV~eGRDigtvV~P~AdlKIfL~As~evR 434 (512)
T PRK13477 355 GSPQRVWINGEDVTEAIRSPEVTSSVSAIAAQPAVRQALVKQQQRIGEKGGLVAEGRDIGTHVFPDAELKIFLTASVEER 434 (512)
T ss_pred CCCceEEeCCcchHhhhcchhHHHHHHHHhCCHHHHHHHHHHHHHHhhcCCEEEEcccceeEEcCCCCEEEEEECCHHHH
Confidence 011122222 22233444554433321 111 135889999999999
Q ss_pred HHhhhhhhhhhhh-hccccc----ccc---ccc-cCCCC---CCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388 136 EQRDVKGHYKKAR-EGKIKS----FTG---VSQ-PYEAP---KNPDLILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 136 ~~Rl~~r~~~~~r-~~~~~~----~~~---~~~-~ye~~---~~~~~~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
.+|+.++...+.- ....+. +.. .+. ++-.| ..++++|||++++++++++.|++.+.+
T Consensus 435 a~RR~~~l~~Rpll~~~~e~i~~~i~eRd~~D~~R~i~PLy~a~dai~IDTs~lsieeVv~~Il~~i~~ 503 (512)
T PRK13477 435 ARRRALDLQAQGFPVIDLEQLEAQIAERDRLDSTREIAPLRKADDAIELITDGLSIEEVVDKIIDLYRD 503 (512)
T ss_pred HHHHHhhhhhCCCccCCHHHHHHHHHHHHhhhcccccccccccCCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 9997544211110 000111 000 011 11112 235699999999999999999999975
No 63
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=99.40 E-value=7.4e-13 Score=106.63 Aligned_cols=148 Identities=18% Similarity=0.190 Sum_probs=88.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc-cccccCCCCHHHHHHH---HHHHHHHHHHHHhCCCeEE
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN-GINANLAFSEEDRNEN---VRRAAECAKMFAECGFIAL 98 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~-~l~~~~~~~~~~~~~~---~~~i~~~~~~~~~~g~~VI 98 (272)
++|.|+|.||+||||+|+.|+ .+ |+++..+. +.+.+ ++.. .++. .+... ...+......++..+..||
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~l---g~~~i~l~-el~~e~~~~~--~~de-~r~s~~vD~d~~~~~le~~~~~~~~Iv 72 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-EL---GYKVIELN-ELAKENGLYT--EYDE-LRKSVIVDVDKLRKRLEELLREGSGIV 72 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-Hh---CCceeeHH-HHHHhcCCee--ccCC-ccceEEeeHHHHHHHHHHHhccCCeEe
Confidence 479999999999999999999 77 77766554 22211 1111 1110 00000 1111122222223455565
Q ss_pred EcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccc----cccCCCCCCCcEEEeC
Q psy17388 99 CSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGV----SQPYEAPKNPDLILET 174 (272)
Q Consensus 99 ~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~----~~~ye~~~~~~~~Idt 174 (272)
.+..+. ++. -..++|.|.|+++++.+|+..|.|....-.+.-..+.+ ...++.. .+.+.|||
T Consensus 73 d~H~~h----------l~~---~~dlVvVLR~~p~~L~~RLk~RGy~~eKI~ENveAEi~~vi~~EA~E~~-~~v~evdt 138 (180)
T COG1936 73 DSHLSH----------LLP---DCDLVVVLRADPEVLYERLKGRGYSEEKILENVEAEILDVILIEAVERF-EAVIEVDT 138 (180)
T ss_pred echhhh----------cCC---CCCEEEEEcCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhc-CceEEEEC
Confidence 544332 222 13488999999999999999998765443322111111 1112222 45689999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q psy17388 175 VNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 175 ~~~~~ee~~~~I~~~L~~ 192 (272)
++.+++++++.|.+.+..
T Consensus 139 t~~s~ee~~~~i~~ii~~ 156 (180)
T COG1936 139 TNRSPEEVAEEIIDIIGG 156 (180)
T ss_pred CCCCHHHHHHHHHHHHcc
Confidence 999999999999999995
No 64
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=99.40 E-value=2.6e-12 Score=107.34 Aligned_cols=165 Identities=15% Similarity=0.186 Sum_probs=88.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc-------cccccccc--cCCCCHHHHHHHH-----HHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD-------NLRNGINA--NLAFSEEDRNENV-----RRAAEC 86 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D-------~i~~~l~~--~~~~~~~~~~~~~-----~~i~~~ 86 (272)
++++|+|.|++||||||+++.|++.+...|+.+.++... .++..+.. ...+........+ ..+.+.
T Consensus 2 ~g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~~ 81 (195)
T TIGR00041 2 RGMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTREPGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRHEHLEDK 81 (195)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999998777766544321 11111111 1112211111110 112233
Q ss_pred HHHHHhCCCeEEEcCCCCcH---------HHHHHHHHHHHhCC--CceEEEEEeCCHHHHHHhhhhhhhhhh-hhccccc
Q psy17388 87 AKMFAECGFIALCSFVSPTA---------AARDRAREIHRNAN--LEFFEVFVNTPVEICEQRDVKGHYKKA-REGKIKS 154 (272)
Q Consensus 87 ~~~~~~~g~~VI~d~~~~~~---------~~r~~~~~~~~~~g--~~~~~V~L~~~~e~~~~Rl~~r~~~~~-r~~~~~~ 154 (272)
....+..|.+||+|...... ...+++..+..... .+.++|||++|++++++|+.+|..... .......
T Consensus 82 i~~~l~~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~R~~~r~~~~~~~~~~~~~ 161 (195)
T TIGR00041 82 IKPALAEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALERLRKRGELDREEFEKLDF 161 (195)
T ss_pred HHHHHhCCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHhcCCcchHHHHHHHH
Confidence 44455678899998432110 01122223222211 267899999999999999866532100 0001111
Q ss_pred cccccccCCCC---CCCcEEEeCCCCCHHHHHHHH
Q psy17388 155 FTGVSQPYEAP---KNPDLILETVNVPVEKCANSV 186 (272)
Q Consensus 155 ~~~~~~~ye~~---~~~~~~Idt~~~~~ee~~~~I 186 (272)
+..+...|... ..+.++||++ .+++++.++|
T Consensus 162 ~~~~~~~y~~~~~~~~~~~~id~~-~~~e~v~~~i 195 (195)
T TIGR00041 162 FEKVRQRYLELADKEKSIHVIDAT-NSVEEVEQDI 195 (195)
T ss_pred HHHHHHHHHHHHcCCCcEEEEeCC-CCHHHHHhhC
Confidence 22223333321 2234677764 6899888764
No 65
>PRK13975 thymidylate kinase; Provisional
Probab=99.39 E-value=2.3e-12 Score=107.78 Aligned_cols=161 Identities=20% Similarity=0.220 Sum_probs=86.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc-----cccccccCCCCH--------HHHHHHHHHHHHHHH
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL-----RNGINANLAFSE--------EDRNENVRRAAECAK 88 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i-----~~~l~~~~~~~~--------~~~~~~~~~i~~~~~ 88 (272)
+++|+|.|++||||||+++.|+++|. ....+.+.|.. ++.+... .... .++.+.++.+ .
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~---~~~~~~~~~~~~g~~ir~~~~~~-~~~~~~~~~~f~~~r~~~~~~i----~ 73 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLN---AFWTCEPTDGKIGKLIREILSGS-KCDKETLALLFAADRVEHVKEI----E 73 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC---CCeeECCCCChHHHHHHHHHccC-CCCHHHHHHHHHHHHHHHHHHH----H
Confidence 47999999999999999999999993 22333444322 1111111 1111 1222222211 1
Q ss_pred HHHhCCCeEEEcCCCCcH--------HHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccc
Q psy17388 89 MFAECGFIALCSFVSPTA--------AARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQ 160 (272)
Q Consensus 89 ~~~~~g~~VI~d~~~~~~--------~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~ 160 (272)
..+.. ..||+|...... .....+.........+.++|||++|++++.+|+.+|...... .......+..
T Consensus 74 ~~~~~-~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~~~~~~--~~~~~~~~~~ 150 (196)
T PRK13975 74 EDLKK-RDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRDKEIFE--KKEFLKKVQE 150 (196)
T ss_pred HHHcC-CEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccCccccc--hHHHHHHHHH
Confidence 12223 467776321100 001111122111223568999999999999999765310000 0000011111
Q ss_pred cCC--------CCCCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388 161 PYE--------APKNPDLILETVNVPVEKCANSVLDMIAAK 193 (272)
Q Consensus 161 ~ye--------~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~ 193 (272)
.|. .+....++||+++.++++++++|.+.|..+
T Consensus 151 ~y~~~~~~~~~~~~~~~~~Id~~~~~~eev~~~I~~~i~~~ 191 (196)
T PRK13975 151 KYLELANNEKFMPKYGFIVIDTTNKSIEEVFNEILNKIKDK 191 (196)
T ss_pred HHHHHHhhcccCCcCCEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 111 122346899998899999999999999765
No 66
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.39 E-value=3.8e-12 Score=106.10 Aligned_cols=154 Identities=17% Similarity=0.243 Sum_probs=86.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc-----ccCC-----------------CCHH------
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN-----ANLA-----------------FSEE------ 74 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~-----~~~~-----------------~~~~------ 74 (272)
.+|.|.||+||||||+|+.|+++| ++.|+|+..+.+.+. ...+ |...
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~L-----g~~yldTGamYRa~a~~~l~~~~~~~d~~~~~~l~~~~~i~f~~~~~v~l~ 79 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKL-----GFHYLDTGAMYRAVALAALKHGVDLDDEDALVALAKELDISFVNDDRVFLN 79 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHh-----CCCeecccHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCceecccceEEEC
Confidence 789999999999999999999999 677888876543221 1111 1110
Q ss_pred -------HHHH--------------HHHHHHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHH
Q psy17388 75 -------DRNE--------------NVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVE 133 (272)
Q Consensus 75 -------~~~~--------------~~~~i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e 133 (272)
-+.+ ..+.+.+..+.+.+.+..+|+++-..- --.+.+ ..+.|||+++++
T Consensus 80 gedvs~~ir~~~V~~~aS~vA~~p~VR~~l~~~Qr~~a~~~~~~V~dGRDiG-------TvV~Pd---A~lKiFLtAS~e 149 (222)
T COG0283 80 GEDVSEEIRTEEVGNAASKVAAIPEVREALVKLQRAFAKNGPGIVADGRDIG-------TVVFPD---AELKIFLTASPE 149 (222)
T ss_pred CchhhhhhhhHHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEecCCCc-------ceECCC---CCeEEEEeCCHH
Confidence 0000 011112233444444343444431110 001122 227899999999
Q ss_pred HHHHhhhhhhhhhhhhcccccc-------ccccccCC----CCCCCcEEEeCCCCCHHHHHHHHHHHHH
Q psy17388 134 ICEQRDVKGHYKKAREGKIKSF-------TGVSQPYE----APKNPDLILETVNVPVEKCANSVLDMIA 191 (272)
Q Consensus 134 ~~~~Rl~~r~~~~~r~~~~~~~-------~~~~~~ye----~~~~~~~~Idt~~~~~ee~~~~I~~~L~ 191 (272)
++.+|..+.+..+......+.+ ...++.-+ .|...-+.|||++++++|++++|++.+.
T Consensus 150 ~RA~RR~~q~~~~g~~~~~e~ll~eI~~RD~~D~~R~~~PLk~A~DA~~iDTs~msieeVv~~il~~~~ 218 (222)
T COG0283 150 ERAERRYKQLQAKGFSEVFEELLAEIKERDERDSNRAVAPLKPAEDALLLDTSSLSIEEVVEKILELIR 218 (222)
T ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHhhhccccCcCCCCcCCCCeEEEECCCCcHHHHHHHHHHHHH
Confidence 9999975543222110001110 11111111 1233348999999999999999999887
No 67
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.39 E-value=1.3e-11 Score=101.77 Aligned_cols=159 Identities=16% Similarity=0.122 Sum_probs=83.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccccc--C-CCCHHHHHHH---------------HHHHH
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINAN--L-AFSEEDRNEN---------------VRRAA 84 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~--~-~~~~~~~~~~---------------~~~i~ 84 (272)
.+|+|+|+|||||||+++.|+..+...| ...++..+.-+.....+ . ..+.+..... +....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 80 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGDP-RVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIP 80 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcCC-cEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccCh
Confidence 5799999999999999999999874221 12232221111111000 0 0111110000 00011
Q ss_pred HHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCC
Q psy17388 85 ECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEA 164 (272)
Q Consensus 85 ~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~ 164 (272)
..+...+.+|..||.++.. ..+..+++.. ..+.+|||++|.+++.+|+..|.... ...+.........|..
T Consensus 81 ~~i~~~~~~g~~vv~~g~~---~~~~~~~~~~----~~~~~i~l~~~~~~~~~Rl~~R~~~~--~~~~~~rl~~~~~~~~ 151 (179)
T TIGR02322 81 AEIDQWLEAGDVVVVNGSR---AVLPEARQRY----PNLLVVNITASPDVLAQRLAARGRES--REEIEERLARSARFAA 151 (179)
T ss_pred HHHHHHHhcCCEEEEECCH---HHHHHHHHHC----CCcEEEEEECCHHHHHHHHHHcCCCC--HHHHHHHHHHHhhccc
Confidence 1233445677778777542 2333333322 25578999999999999996552100 0000000001111211
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388 165 PKNPDLILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 165 ~~~~~~~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
..+++++.+++.++++++++|.+.+..
T Consensus 152 -~~~~~~vi~~~~~~ee~~~~i~~~l~~ 178 (179)
T TIGR02322 152 -APADVTTIDNSGSLEVAGETLLRLLRK 178 (179)
T ss_pred -ccCCEEEEeCCCCHHHHHHHHHHHHcc
Confidence 245666444567999999999998864
No 68
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.38 E-value=6.9e-12 Score=104.37 Aligned_cols=153 Identities=16% Similarity=0.169 Sum_probs=83.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc-----ccCCCCHHHHHHHHH---------------
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN-----ANLAFSEEDRNENVR--------------- 81 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~-----~~~~~~~~~~~~~~~--------------- 81 (272)
+.+|+|+|+|||||||+++.|+..+ +.. +++.|....... ....+..++....++
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~y 76 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQRE---QTQ--LLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYY 76 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC---CCe--EEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCcc
Confidence 4689999999999999999998876 223 333332211110 111222221110000
Q ss_pred HHHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccc-cc
Q psy17388 82 RAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGV-SQ 160 (272)
Q Consensus 82 ~i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~-~~ 160 (272)
.+...+...++.|..||+++.. .....++ +..+.+..+|||++|.+++.+|+.+|.... ...+. ..+ +.
T Consensus 77 g~~~~~~~~l~~g~~VI~~G~~---~~~~~~~---~~~~~~~~vi~l~~s~e~l~~RL~~R~~~~--~~~i~--~rl~r~ 146 (186)
T PRK10078 77 GVGIEIDLWLHAGFDVLVNGSR---AHLPQAR---ARYQSALLPVCLQVSPEILRQRLENRGREN--ASEIN--ARLARA 146 (186)
T ss_pred CCcHHHHHHHhCCCEEEEeChH---HHHHHHH---HHcCCCEEEEEEeCCHHHHHHHHHHhCCCC--HHHHH--HHHHHh
Confidence 0011233445678778875431 2223333 333456788999999999999996542100 00010 011 11
Q ss_pred cCCCCCCCc-EEEeCCCCCHHHHHHHHHHHHHh
Q psy17388 161 PYEAPKNPD-LILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 161 ~ye~~~~~~-~~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
.+. ..++ ++|+ ++.++++++++|.+.+..
T Consensus 147 ~~~--~~ad~~vi~-~~~s~ee~~~~i~~~l~~ 176 (186)
T PRK10078 147 ARY--QPQDCHTLN-NDGSLRQSVDTLLTLLHL 176 (186)
T ss_pred hhh--ccCCEEEEe-CCCCHHHHHHHHHHHHhh
Confidence 111 1345 6666 457999999999988864
No 69
>PRK06217 hypothetical protein; Validated
Probab=99.38 E-value=7.1e-12 Score=104.02 Aligned_cols=103 Identities=18% Similarity=0.109 Sum_probs=60.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHH-HHHHHHHHHHHHHHHHHhCCCeEEEcC
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEE-DRNENVRRAAECAKMFAECGFIALCSF 101 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~-~~~~~~~~i~~~~~~~~~~g~~VI~d~ 101 (272)
+.|+|+|.|||||||+|++|++.+ ++.+++.|.+...-. +..+... ..... ...+...+......|| ++
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l-----~~~~~~~D~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~vi-~G 71 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERL-----DIPHLDTDDYFWLPT-DPPFTTKRPPEER---LRLLLEDLRPREGWVL-SG 71 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc-----CCcEEEcCceeeccC-CCCccccCCHHHH---HHHHHHHHhcCCCEEE-Ec
Confidence 469999999999999999999999 456788887754211 1111111 11111 1122222223333444 43
Q ss_pred CCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh
Q psy17388 102 VSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH 143 (272)
Q Consensus 102 ~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~ 143 (272)
... ...+. +.... ..+|||++|.+++.+|+.+|.
T Consensus 72 ~~~--~~~~~---~~~~~---d~~i~Ld~~~~~~~~Rl~~R~ 105 (183)
T PRK06217 72 SAL--GWGDP---LEPLF---DLVVFLTIPPELRLERLRLRE 105 (183)
T ss_pred cHH--HHHHH---HHhhC---CEEEEEECCHHHHHHHHHcCc
Confidence 221 22222 23322 367999999999999998774
No 70
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=99.36 E-value=1.4e-11 Score=109.06 Aligned_cols=149 Identities=15% Similarity=0.216 Sum_probs=87.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHH-HhCCCeEEE
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMF-AECGFIALC 99 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~-~~~g~~VI~ 99 (272)
.+.+|+|+|++||||||+++.|++. | ...+|.-. . ..+..+.+.+..- ......|++
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~~~----g--~~~~d~~~--~--------------~L~~~l~~~~~~~~~~~~~av~i 62 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALEDL----G--YYCVDNLP--P--------------SLLPKLVELLAQSGGIRKVAVVI 62 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHc----C--CeEECCcC--H--------------HHHHHHHHHHHhcCCCCCeEEEE
Confidence 4468999999999999999999743 3 44454321 0 1111222222110 112346667
Q ss_pred cCCCC--cHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhh--hhcc-ccccccccccCCC-CCCCcEEEe
Q psy17388 100 SFVSP--TAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKA--REGK-IKSFTGVSQPYEA-PKNPDLILE 173 (272)
Q Consensus 100 d~~~~--~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~--r~~~-~~~~~~~~~~ye~-~~~~~~~Id 173 (272)
|..+. ....++.+.. ++..|..+.+|||+++.+++.+|+......+. .... ...+...+..+++ ...++++||
T Consensus 63 D~r~~~~~~~~~~~~~~-L~~~g~~~~iI~L~a~~e~L~~Rl~~~rr~RPLl~~~~l~e~I~~eR~~l~pl~~~ADivID 141 (288)
T PRK05416 63 DVRSRPFFDDLPEALDE-LRERGIDVRVLFLDASDEVLIRRYSETRRRHPLSGDGSLLEGIELERELLAPLRERADLVID 141 (288)
T ss_pred ccCchhhHHHHHHHHHH-HHHcCCcEEEEEEECCHHHHHHHHhhcccCCCccCCccHHHHHHHHHhhhhhHHHhCCEEEE
Confidence 76543 1234444444 44458888899999999999999853211000 0000 0011112222222 134789999
Q ss_pred CCCCCHHHHHHHHHHHHHh
Q psy17388 174 TVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 174 t~~~~~ee~~~~I~~~L~~ 192 (272)
|++.++++++++|.+.+..
T Consensus 142 Ts~ls~~el~e~I~~~l~~ 160 (288)
T PRK05416 142 TSELSVHQLRERIRERFGG 160 (288)
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999854
No 71
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=99.34 E-value=3.4e-11 Score=95.33 Aligned_cols=165 Identities=16% Similarity=0.191 Sum_probs=104.7
Q ss_pred hhcC-CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc-----cCCCCHH---------------
Q psy17388 16 FKEG-QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA-----NLAFSEE--------------- 74 (272)
Q Consensus 16 ~~~~-~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~-----~~~~~~~--------------- 74 (272)
++++ .++++|+++|.+.||||++|.++..... -++.++-.|.+.+.+.. ..+|..+
T Consensus 16 ~~ag~~~griVlLNG~~saGKSSiA~A~Q~~~a---~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~ 92 (205)
T COG3896 16 AMAGMPEGRIVLLNGGSSAGKSSIALAFQDLAA---EPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHP 92 (205)
T ss_pred HHcCCCCceEEEecCCCccchhHHHHHHHHHhh---cchhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEeec
Confidence 3344 3679999999999999999999999873 25555655655443321 1111110
Q ss_pred --HHHHHHHHHHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccc
Q psy17388 75 --DRNENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKI 152 (272)
Q Consensus 75 --~~~~~~~~i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~ 152 (272)
--+.........+..+++.|..||.|.+...+.+.-.....+ .|.++..|-+.||.|+..+|..+ +.++.
T Consensus 93 gpi~e~~~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r~l--~g~~v~~VGV~~p~E~~~~Re~r------r~dR~ 164 (205)
T COG3896 93 GPILELAMHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLRVL--EGCRVWMVGVHVPDEEGARRELR------RGDRH 164 (205)
T ss_pred hhHHHHHHHHHHHHHHHHhccCcceeehhcccchhhHHHHHHHH--hCCceEEEEeeccHHHHHHHHhh------cCCcC
Confidence 011111222334566788999999887654433332222233 36788889999999999999642 22223
Q ss_pred cccccc-cccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHH
Q psy17388 153 KSFTGV-SQPYEAPKNPDLILETVNVPVEKCANSVLDMIA 191 (272)
Q Consensus 153 ~~~~~~-~~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~ 191 (272)
.++... ......+...|+.+||+..|+.||+..|.+.++
T Consensus 165 pG~~rg~~r~vHa~~~YDlevDTS~~tp~EcAr~i~~r~q 204 (205)
T COG3896 165 PGWNRGSARAVHADAEYDLEVDTSATTPHECAREIHERYQ 204 (205)
T ss_pred cchhhhhHHHhcCCcceeeeecccCCCHHHHHHHHHHHhc
Confidence 333221 222334567899999999999999999988765
No 72
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.33 E-value=9.3e-12 Score=103.14 Aligned_cols=156 Identities=13% Similarity=0.105 Sum_probs=86.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc-ccccccccCC-------------CCHHHHHHHHHHHHHHHH
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN-LRNGINANLA-------------FSEEDRNENVRRAAECAK 88 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~-i~~~l~~~~~-------------~~~~~~~~~~~~i~~~~~ 88 (272)
.+|+|.|+|||||||+|+.|++.+ ++.+++.++ ++..+..... +.+ ....+..+...+.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~-----g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~ 76 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKY-----GFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVP--LDTVLDLLKDAMV 76 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh-----CCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHH
Confidence 589999999999999999999998 455666644 3332211100 010 0111222222222
Q ss_pred HHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccc-ccc-cccc-------
Q psy17388 89 MFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKI-KSF-TGVS------- 159 (272)
Q Consensus 89 ~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~-~~~-~~~~------- 159 (272)
.....+..+|+|+..... .....+......+..+|||++|.+++.+|+.+|.....|.... ..+ ..+.
T Consensus 77 ~~~~~~~~~i~dg~~~~~---~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~~~~~~ 153 (188)
T TIGR01360 77 AALGTSKGFLIDGYPREV---KQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAETSGRVDDNEKTIKKRLETYYKATE 153 (188)
T ss_pred cccCcCCeEEEeCCCCCH---HHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhhH
Confidence 233456677877643222 2222222333446789999999999999997663211111000 001 0111
Q ss_pred ---ccCCCCCCCcE-EEeCCCCCHHHHHHHHHHHHH
Q psy17388 160 ---QPYEAPKNPDL-ILETVNVPVEKCANSVLDMIA 191 (272)
Q Consensus 160 ---~~ye~~~~~~~-~Idt~~~~~ee~~~~I~~~L~ 191 (272)
..|.. ...+ .||+ +.+++++.+.|...+.
T Consensus 154 ~~~~~y~~--~~~~~~id~-~~~~~~v~~~i~~~l~ 186 (188)
T TIGR01360 154 PVIAYYET--KGKLRKINA-EGTVDDVFLQVCTAID 186 (188)
T ss_pred HHHHHHHh--CCCEEEEEC-CCCHHHHHHHHHHHHh
Confidence 11221 1234 6665 5899999999999885
No 73
>PRK14531 adenylate kinase; Provisional
Probab=99.33 E-value=1.5e-11 Score=102.04 Aligned_cols=160 Identities=15% Similarity=0.128 Sum_probs=87.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC-ccccccccccCCCCHHHHHHHHH-------H-HHHHHH-HHHh
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG-DNLRNGINANLAFSEEDRNENVR-------R-AAECAK-MFAE 92 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~-D~i~~~l~~~~~~~~~~~~~~~~-------~-i~~~~~-~~~~ 92 (272)
+.|+|+|+|||||||+|+.|++.+ ++.+++. |.++..+.....+..... ..+. . +..+.. .+.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~-----g~~~is~gd~lr~~~~~~~~~~~~~~-~~~~~G~~v~d~l~~~~~~~~l~~ 76 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH-----GLRHLSTGDLLRSEVAAGSALGQEAE-AVMNRGELVSDALVLAIVESQLKA 76 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh-----CCCeEecccHHHHHHhcCCHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHhh
Confidence 469999999999999999999998 5667776 555554432211111000 0000 0 011111 1221
Q ss_pred -CCCeEEEcCCCCcHHHHHHHHHHHHhCCCc-eEEEEEeCCHHHHHHhhhhhhhhhhhh----cccccccc----ccccC
Q psy17388 93 -CGFIALCSFVSPTAAARDRAREIHRNANLE-FFEVFVNTPVEICEQRDVKGHYKKARE----GKIKSFTG----VSQPY 162 (272)
Q Consensus 93 -~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~-~~~V~L~~~~e~~~~Rl~~r~~~~~r~----~~~~~~~~----~~~~y 162 (272)
.+..+|.|+..........+..++...+.+ ..+++|+||++++.+|+..|....... .++..+.. +.+.|
T Consensus 77 ~~~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~r~dD~~e~i~~Rl~~y~~~~~pv~~~y 156 (183)
T PRK14531 77 LNSGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARGRADDNEAVIRNRLEVYREKTAPLIDHY 156 (183)
T ss_pred ccCCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 233345565544445556666666655544 357999999999999997652211000 00000100 11122
Q ss_pred CCCCCCcEEEeCCCCCHHHHHHHHHHHH
Q psy17388 163 EAPKNPDLILETVNVPVEKCANSVLDMI 190 (272)
Q Consensus 163 e~~~~~~~~Idt~~~~~ee~~~~I~~~L 190 (272)
.. ...-+.||. +.+++++...|.+.|
T Consensus 157 ~~-~~~~~~id~-~~~~~~v~~~i~~~l 182 (183)
T PRK14531 157 RQ-RGLLQSVEA-QGSIEAITERIEKVL 182 (183)
T ss_pred Hh-cCCEEEEEC-CCCHHHHHHHHHHHh
Confidence 21 111256675 568999999998876
No 74
>PRK01184 hypothetical protein; Provisional
Probab=99.32 E-value=3e-11 Score=100.13 Aligned_cols=158 Identities=15% Similarity=0.143 Sum_probs=86.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC-cccccccc-ccCCC-CHHHHH---HHHHH-----HHHHH-HHH
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG-DNLRNGIN-ANLAF-SEEDRN---ENVRR-----AAECA-KMF 90 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~-D~i~~~l~-~~~~~-~~~~~~---~~~~~-----i~~~~-~~~ 90 (272)
++|+|+|+|||||||+|+ +++.+ | +.+++. |.+++.+. .+... ...... ..... +...+ ..+
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~---g--~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i 75 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREM---G--IPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKELGMDAVAKRTVPKI 75 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHc---C--CcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHChHHHHHHHHHHH
Confidence 589999999999999998 56666 4 455664 66665432 11111 000000 01111 11111 122
Q ss_pred Hh-CCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcccccccccccc---CCC--
Q psy17388 91 AE-CGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQP---YEA-- 164 (272)
Q Consensus 91 ~~-~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~---ye~-- 164 (272)
.. .+..||.|... .....+.+++.+. ..+.+|+++||.+++.+|+..|..... ....+.+...... +..
T Consensus 76 ~~~~~~~vvidg~r-~~~e~~~~~~~~~---~~~~~i~v~~~~~~~~~Rl~~R~~~~d-~~~~~~~~~r~~~q~~~~~~~ 150 (184)
T PRK01184 76 REKGDEVVVIDGVR-GDAEVEYFRKEFP---EDFILIAIHAPPEVRFERLKKRGRSDD-PKSWEELEERDERELSWGIGE 150 (184)
T ss_pred HhcCCCcEEEeCCC-CHHHHHHHHHhCC---cccEEEEEECCHHHHHHHHHHcCCCCC-hhhHHHHHHHHHHHhccCHHH
Confidence 22 34677777653 3344555555442 356889999999999999965521000 0011111111111 111
Q ss_pred -CCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388 165 -PKNPDLILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 165 -~~~~~~~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
...++++|+++ .++++...+|.+.+..
T Consensus 151 ~~~~ad~vI~N~-~~~~~l~~~v~~~~~~ 178 (184)
T PRK01184 151 VIALADYMIVND-STLEEFRARVRKLLER 178 (184)
T ss_pred HHHhcCEEEeCC-CCHHHHHHHHHHHHHH
Confidence 13578999965 4899999998887763
No 75
>KOG3062|consensus
Probab=99.32 E-value=9.1e-12 Score=103.93 Aligned_cols=170 Identities=17% Similarity=0.293 Sum_probs=109.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCC-EEEecCccccccccccCCCCHHHHHHHHHH-HHHHHHHHHhCCCeEEEc
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIP-AYALDGDNLRNGINANLAFSEEDRNENVRR-AAECAKMFAECGFIALCS 100 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~-~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~-i~~~~~~~~~~g~~VI~d 100 (272)
.+|+|||.|.|||||.|+.|.+.|.++|.+ .+++..|.- -++..+..|.+..++..++. +...+..-+..+.+||+|
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~des-lg~~~ns~y~~s~~EK~lRg~L~S~v~R~Lsk~~iVI~D 80 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDES-LGIEKNSNYGDSQAEKALRGKLRSAVDRSLSKGDIVIVD 80 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhh-cCCCCcccccccHHHHHHHHHHHHHHHhhcccCcEEEEe
Confidence 479999999999999999999999988844 444433332 22333333333333333332 333344445677899999
Q ss_pred CCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhc-cccccccccccCCCC------CCCcEEEe
Q psy17388 101 FVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREG-KIKSFTGVSQPYEAP------KNPDLILE 173 (272)
Q Consensus 101 ~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~-~~~~~~~~~~~ye~~------~~~~~~Id 173 (272)
.++....+|.++.+.++..+..+.+||..+|.|.+++....+.... ..+ .-+-++.+-.+||+| ..|-+.+-
T Consensus 81 slNyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~Ns~~~~p~-e~gy~~e~le~L~~RyEeP~s~NRWDsPLf~ll 159 (281)
T KOG3062|consen 81 SLNYIKGFRYELYCEAKAARTTYCVVHTAVPQELCREWNSEREDPG-EDGYDDELLEALVQRYEEPNSRNRWDSPLFTLL 159 (281)
T ss_pred cccccccceeeeeeehhccceeEEEEEecCCHHHHHHhcccCCCCC-CCCCCHHHHHHHHHHhhCCCccccccCcceEEe
Confidence 9998888999998999988889999999999999999984431100 001 011144456678865 35556664
Q ss_pred C--CCCCHHHHHHHHHHHHHhCCCCCC
Q psy17388 174 T--VNVPVEKCANSVLDMIAAKGLIPA 198 (272)
Q Consensus 174 t--~~~~~ee~~~~I~~~L~~~~~~~~ 198 (272)
. ..++++ .|.+++.+..-+|+
T Consensus 160 ~~~~~~~~~----~I~~al~~nk~~~P 182 (281)
T KOG3062|consen 160 PDVITLPID----DILKALFENKPLPP 182 (281)
T ss_pred cccCCCcHH----HHHHHHhcCCCCCC
Confidence 4 233444 45555555544553
No 76
>PRK13976 thymidylate kinase; Provisional
Probab=99.31 E-value=1e-10 Score=99.05 Aligned_cols=167 Identities=13% Similarity=0.160 Sum_probs=93.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHc-C-CCEEEecC-------ccccccccccCCCCHHHHHH-----HHHHHHHHHH
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQ-G-IPAYALDG-------DNLRNGINANLAFSEEDRNE-----NVRRAAECAK 88 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~-g-~~~~~ld~-------D~i~~~l~~~~~~~~~~~~~-----~~~~i~~~~~ 88 (272)
++|+|.|..||||||+++.|++.|... | .++.+... ..+++.+.....+++....- ..+.+.+.+.
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~~~~~I~ 80 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLTREPGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREHFVKVIL 80 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEeeCCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999875 5 35543321 11222221100122211100 0112233456
Q ss_pred HHHhCCCeEEEcCCCCc------------HHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccc
Q psy17388 89 MFAECGFIALCSFVSPT------------AAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFT 156 (272)
Q Consensus 89 ~~~~~g~~VI~d~~~~~------------~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~ 156 (272)
..++.|.+||+|..... ..+...+...+. ...|.++|||++|++++.+|+.++.+. ......+.
T Consensus 81 p~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~-~~~PDl~i~Ldv~~e~a~~Ri~~~~~e---~~~~~~l~ 156 (209)
T PRK13976 81 PALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVV-DKYPDITFVLDIDIELSLSRADKNGYE---FMDLEFYD 156 (209)
T ss_pred HHHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhh-CCCCCEEEEEeCCHHHHHHHhcccchh---cccHHHHH
Confidence 66789999999853321 112222222222 235899999999999999998543221 00111223
Q ss_pred cccccCCCC--CC--CcEEEeCC--CCC---HHHHHHHHHHHHHhC
Q psy17388 157 GVSQPYEAP--KN--PDLILETV--NVP---VEKCANSVLDMIAAK 193 (272)
Q Consensus 157 ~~~~~ye~~--~~--~~~~Idt~--~~~---~ee~~~~I~~~L~~~ 193 (272)
.++..|... .. .-++||.+ +.+ ++++.++|.+.+.+.
T Consensus 157 ~v~~~Y~~l~~~~~~~~~~id~~~~~~~~~~~e~v~~~i~~~i~~~ 202 (209)
T PRK13976 157 KVRKGFREIVIKNPHRCHVITCIDAKDNIEDINSVHLEIVKLLHAV 202 (209)
T ss_pred HHHHHHHHHHHhCCCCeEEEECCCCccCcCCHHHHHHHHHHHHHHH
Confidence 344444421 11 23556653 234 999999999888653
No 77
>PRK07933 thymidylate kinase; Validated
Probab=99.29 E-value=3.3e-11 Score=102.43 Aligned_cols=163 Identities=16% Similarity=0.172 Sum_probs=93.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc---------ccccccccc---CCCCH--------HHHHHHHHH
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD---------NLRNGINAN---LAFSE--------EDRNENVRR 82 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D---------~i~~~l~~~---~~~~~--------~~~~~~~~~ 82 (272)
++|+|.|..||||||+++.|++.|..+|+++.++... .+++.+... ...+. .+|.+.
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~~~--- 77 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRAGA--- 77 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhhhh---
Confidence 4899999999999999999999999888887765421 112222211 11111 111111
Q ss_pred HHHHHHHHHhCCCeEEEcCCCCcH--------------HHHHHHHHHHH---hCCCceEEEEEeCCHHHHHHhhhhhhhh
Q psy17388 83 AAECAKMFAECGFIALCSFVSPTA--------------AARDRAREIHR---NANLEFFEVFVNTPVEICEQRDVKGHYK 145 (272)
Q Consensus 83 i~~~~~~~~~~g~~VI~d~~~~~~--------------~~r~~~~~~~~---~~g~~~~~V~L~~~~e~~~~Rl~~r~~~ 145 (272)
+ ..+...++.|.+||+|...... ....++..+.. ....|.++|||++|+++..+|+.+|...
T Consensus 78 ~-~~I~p~l~~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~R~~~ 156 (213)
T PRK07933 78 R-DELAGLLAAHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAERARRRAAQ 156 (213)
T ss_pred H-HHHHHHHhCCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHHHHhhccc
Confidence 1 2234455789899988532211 11223332221 1125889999999999999998765311
Q ss_pred h-----hhhcc-ccccccccccCCCC-----CCCcEEEeCCCCCHHHHHHHHHHHH
Q psy17388 146 K-----AREGK-IKSFTGVSQPYEAP-----KNPDLILETVNVPVEKCANSVLDMI 190 (272)
Q Consensus 146 ~-----~r~~~-~~~~~~~~~~ye~~-----~~~~~~Idt~~~~~ee~~~~I~~~L 190 (272)
. .+-.. ...+..+++.|... ...-++||. +.+++++.++|.+.|
T Consensus 157 ~~~~~~d~~E~~~~f~~~v~~~Y~~~~~~~~~~~~~~ida-~~~~e~v~~~i~~~~ 211 (213)
T PRK07933 157 DADRARDAYERDDGLQQRTGAVYAELAAQGWGGPWLVVDP-DVDPAALAARLAAAL 211 (213)
T ss_pred cCCcccccccccHHHHHHHHHHHHHHHHhcCCCCeEEeCC-CCCHHHHHHHHHHHh
Confidence 0 00000 11122334444321 112356665 689999999998776
No 78
>PLN02200 adenylate kinase family protein
Probab=99.28 E-value=7.1e-11 Score=101.80 Aligned_cols=162 Identities=18% Similarity=0.142 Sum_probs=88.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC-ccccccccccCCCCHH-----------HHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG-DNLRNGINANLAFSEE-----------DRNENVRRAAECA 87 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~-D~i~~~l~~~~~~~~~-----------~~~~~~~~i~~~~ 87 (272)
..|.+|+|+|+|||||||+|+.|++.+ ++.+++. |.+++.+......... ........+.
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~-----g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~--- 112 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETF-----GFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQ--- 112 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh-----CCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHH---
Confidence 357899999999999999999999998 5667776 4455443221110000 0001111111
Q ss_pred HHHHh-CCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhc------ccccccc---
Q psy17388 88 KMFAE-CGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREG------KIKSFTG--- 157 (272)
Q Consensus 88 ~~~~~-~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~------~~~~~~~--- 157 (272)
..+.. .+..+|.|+.......+..+...+.. .+..+|||++|++++.+|+.+|...+.... ....+..
T Consensus 113 ~~l~~~~~~~~ILDG~Prt~~q~~~l~~~~~~--~pd~vi~Ld~~~e~~~~Rl~~R~~~r~dd~~e~~~~Rl~~y~~~~~ 190 (234)
T PLN02200 113 KEMESSDNNKFLIDGFPRTEENRIAFERIIGA--EPNVVLFFDCPEEEMVKRVLNRNQGRVDDNIDTIKKRLKVFNALNL 190 (234)
T ss_pred HHHhcCCCCeEEecCCcccHHHHHHHHHHhcc--CCCEEEEEECCHHHHHHHHHcCcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 11111 23356777643333333344333321 356789999999999999976632111100 0000110
Q ss_pred -ccccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388 158 -VSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAK 193 (272)
Q Consensus 158 -~~~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~ 193 (272)
+.+.|... .--+.||. +.+++++.+.|.+.+...
T Consensus 191 pv~~~y~~~-~~~~~IDa-~~~~eeV~~~v~~~l~~~ 225 (234)
T PLN02200 191 PVIDYYSKK-GKLYTINA-VGTVDEIFEQVRPIFAAC 225 (234)
T ss_pred HHHHHHHhc-CCEEEEEC-CCCHHHHHHHHHHHHHHc
Confidence 11112221 11256775 469999999999988754
No 79
>PRK14530 adenylate kinase; Provisional
Probab=99.28 E-value=6.8e-11 Score=100.63 Aligned_cols=112 Identities=13% Similarity=0.012 Sum_probs=62.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc-ccccccC--CCCHHHH-HHHHH--------HHHHHHHH
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR-NGINANL--AFSEEDR-NENVR--------RAAECAKM 89 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~-~~l~~~~--~~~~~~~-~~~~~--------~i~~~~~~ 89 (272)
+..|+|.|+|||||||+|+.|++.+ ++.+++.+.+. .....+. ....... ...+. ....+...
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~-----~~~~i~~g~~lr~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~l~~ 77 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEF-----GVEHVTTGDALRANKQMDISDMDTEYDTPGEYMDAGELVPDAVVNEIVEE 77 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh-----CCeEEeccHHHHHhccCCcccccchHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3479999999999999999999999 56677765543 3221110 0110000 00110 11122223
Q ss_pred HHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388 90 FAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG 142 (272)
Q Consensus 90 ~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r 142 (272)
.+.....+|+++........+.+.... .+..+|||++|.+++.+|+.+|
T Consensus 78 ~l~~~~~~IldG~pr~~~q~~~l~~~~----~~d~vI~Ld~~~~~l~~Rl~~R 126 (215)
T PRK14530 78 ALSDADGFVLDGYPRNLEQAEYLESIT----DLDVVLYLDVSEEELVDRLTGR 126 (215)
T ss_pred HHhcCCCEEEcCCCCCHHHHHHHHHhc----CCCEEEEEeCCHHHHHHHHhCC
Confidence 333333455565322223333333221 2447899999999999999766
No 80
>COG4639 Predicted kinase [General function prediction only]
Probab=99.27 E-value=3e-11 Score=95.62 Aligned_cols=114 Identities=17% Similarity=0.243 Sum_probs=85.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCC--CCHHHHHHHHHHHHHHHHHHHhCCCeEEE
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLA--FSEEDRNENVRRAAECAKMFAECGFIALC 99 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~--~~~~~~~~~~~~i~~~~~~~~~~g~~VI~ 99 (272)
..+++++|+|||||||+|+..-. +.+.++-|.++..+....+ -+.......++.+...++..+..|...|.
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n~~-------~~~~lsld~~r~~lg~~~~~e~sqk~~~~~~~~l~~~l~qrl~~Gk~tii 74 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKENFL-------QNYVLSLDDLRLLLGVSASKENSQKNDELVWDILYKQLEQRLRRGKFTII 74 (168)
T ss_pred ceEEEEecCCCCchhHHHHHhCC-------CcceecHHHHHHHhhhchhhhhccccHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 36899999999999999996433 5667887888775521110 01011122344445556667788999999
Q ss_pred cCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388 100 SFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG 142 (272)
Q Consensus 100 d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r 142 (272)
|.++..+..|..+.+++..+|+....|+++.|.+.|.+|++.+
T Consensus 75 dAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~ 117 (168)
T COG4639 75 DATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLR 117 (168)
T ss_pred EcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhcc
Confidence 9998888999999999999999999999999999999998543
No 81
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=99.27 E-value=7.5e-11 Score=99.20 Aligned_cols=124 Identities=16% Similarity=0.137 Sum_probs=76.9
Q ss_pred cCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccccc--------CCCCHHHHHHHHHHHHHHHHH
Q psy17388 18 EGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINAN--------LAFSEEDRNENVRRAAECAKM 89 (272)
Q Consensus 18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~--------~~~~~~~~~~~~~~i~~~~~~ 89 (272)
...+|.++++.|.|||||||++..+...+. +.+.+++|.|.++..+..- .................+...
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 88 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIEY 88 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 346899999999999999999999998874 3378899999998765310 011111111111222334566
Q ss_pred HHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh
Q psy17388 90 FAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH 143 (272)
Q Consensus 90 ~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~ 143 (272)
..+.+..+|++.+.........+.+.+++.|..+.++++.+|++..++|...|.
T Consensus 89 a~~~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~s~~rv~~R~ 142 (199)
T PF06414_consen 89 AIENRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPELSIERVRQRY 142 (199)
T ss_dssp HHHCT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---HHHHHHHHHHHH
T ss_pred HHHcCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCHHHHHHHHHHHH
Confidence 678888888887665445555466677889999999999999999999997763
No 82
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.25 E-value=2e-11 Score=115.58 Aligned_cols=150 Identities=19% Similarity=0.208 Sum_probs=85.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc-c--CCCCHHHHHHHHHHH-HHHHHHHHhCCCeEEE
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA-N--LAFSEEDRNENVRRA-AECAKMFAECGFIALC 99 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~-~--~~~~~~~~~~~~~~i-~~~~~~~~~~g~~VI~ 99 (272)
.|+|+|+|||||||+|+.|++.+ ++.++|.|.+.+.... . ..|. ...+.+++.+ .++.+.+......||.
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~l-----g~~~id~D~~i~~~~g~~i~~i~~-~~Ge~~fr~~E~~~l~~l~~~~~~Vis 75 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVL-----DLQFIDMDEEIERREGRSVRRIFE-EDGEEYFRLKEKELLRELVERDNVVVA 75 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHc-----CCeEEECcHHHHHHcCCCHHHHHH-HhhhHHHHHHHHHHHHHHhhcCCEEEE
Confidence 58999999999999999999999 6777899877653221 0 0111 1223444433 3344555555556665
Q ss_pred cCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhh--ccccc-cccccccCCCCCCCcEEEeCCC
Q psy17388 100 SFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKARE--GKIKS-FTGVSQPYEAPKNPDLILETVN 176 (272)
Q Consensus 100 d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~--~~~~~-~~~~~~~ye~~~~~~~~Idt~~ 176 (272)
++.... .....++.+++. .+|||++|++++.+|+.++.+..... .++.. +...+..|+. -..||+++
T Consensus 76 ~Gggvv--~~~~~r~~l~~~----~vI~L~as~e~l~~Rl~~~~RPLl~~~~e~l~~L~~~R~~lY~~----~~~IDt~~ 145 (488)
T PRK13951 76 TGGGVV--IDPENRELLKKE----KTLFLYAPPEVLMERVTTENRPLLREGKERIREIWERRKQFYTE----FRGIDTSK 145 (488)
T ss_pred CCCccc--cChHHHHHHhcC----eEEEEECCHHHHHHHhccCCCCCccccHHHHHHHHHHHHHHHhc----ccEEECCC
Confidence 543221 111223333332 36999999999999996532100000 01111 1111222332 15899999
Q ss_pred CCHHHHHHHHHHH
Q psy17388 177 VPVEKCANSVLDM 189 (272)
Q Consensus 177 ~~~ee~~~~I~~~ 189 (272)
.++++++.+|+-.
T Consensus 146 ~s~~e~~~~iv~~ 158 (488)
T PRK13951 146 LNEWETTALVVLE 158 (488)
T ss_pred CCHHHHHHHHHHH
Confidence 9998877766443
No 83
>PRK08356 hypothetical protein; Provisional
Probab=99.23 E-value=2.1e-10 Score=96.14 Aligned_cols=158 Identities=14% Similarity=0.132 Sum_probs=80.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec-Cccccccccc---cCCCCHHH-------------HHHHHHH-
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD-GDNLRNGINA---NLAFSEED-------------RNENVRR- 82 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld-~D~i~~~l~~---~~~~~~~~-------------~~~~~~~- 82 (272)
+.++|+|+|+|||||||+|+.|++ . |.. +++ +|.++..... +..|.... .......
T Consensus 4 ~~~~i~~~G~~gsGK~t~a~~l~~-~---g~~--~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~ 77 (195)
T PRK08356 4 EKMIVGVVGKIAAGKTTVAKFFEE-K---GFC--RVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEK 77 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH-C---CCc--EEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHh
Confidence 447899999999999999999963 4 544 333 3333221111 11111000 0000110
Q ss_pred -----HHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhh-hccccccc
Q psy17388 83 -----AAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAR-EGKIKSFT 156 (272)
Q Consensus 83 -----i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r-~~~~~~~~ 156 (272)
+...+.........+++|+.. .....+.++. .+ ..+||+++|.+++.+|+.+|...... ....+.+.
T Consensus 78 yG~~~~~~~~~~~~~~~~~ividG~r-~~~q~~~l~~----~~--~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~e~~~ 150 (195)
T PRK08356 78 YGEDILIRLAVDKKRNCKNIAIDGVR-SRGEVEAIKR----MG--GKVIYVEAKPEIRFERLRRRGAEKDKGIKSFEDFL 150 (195)
T ss_pred cCcHHHHHHHHHHhccCCeEEEcCcC-CHHHHHHHHh----cC--CEEEEEECCHHHHHHHHHhcCCccccccccHHHHH
Confidence 011111112223356667552 2233333322 11 26799999999999999665321100 00111111
Q ss_pred cc---cc-cCCC---CCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388 157 GV---SQ-PYEA---PKNPDLILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 157 ~~---~~-~ye~---~~~~~~~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
.+ .. .|.. ...+|++|++ +.+++++.++|.+.+..
T Consensus 151 ~~~~~~~~l~~~~~~~~~aD~vI~N-~~~~e~~~~~i~~~~~~ 192 (195)
T PRK08356 151 KFDEWEEKLYHTTKLKDKADFVIVN-EGTLEELRKKVEEILRE 192 (195)
T ss_pred HHHHHHHHhhhhhhHHHhCcEEEEC-CCCHHHHHHHHHHHHHH
Confidence 11 11 1111 2457889877 46999999999888764
No 84
>PRK00023 cmk cytidylate kinase; Provisional
Probab=99.21 E-value=2.4e-10 Score=97.94 Aligned_cols=36 Identities=22% Similarity=0.323 Sum_probs=31.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
.+.+|.|.|++||||||+|+.|++.+ ++.++|.+.+
T Consensus 3 ~~~~i~i~g~~gsGksti~~~la~~~-----~~~~~~~~~~ 38 (225)
T PRK00023 3 KAIVIAIDGPAGSGKGTVAKILAKKL-----GFHYLDTGAM 38 (225)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh-----CCCcccCchh
Confidence 45799999999999999999999999 4566777764
No 85
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=99.21 E-value=4e-10 Score=96.03 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=30.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR 62 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~ 62 (272)
+++|.|.|++||||||+++.|++++ +..++|++.+.
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~-----~~~~~~~g~~~ 37 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKL-----GYAYLDSGAMY 37 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh-----CCceeeCchHH
Confidence 3689999999999999999999999 55667776553
No 86
>PRK13974 thymidylate kinase; Provisional
Probab=99.21 E-value=6.1e-10 Score=94.63 Aligned_cols=171 Identities=13% Similarity=0.151 Sum_probs=90.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCC-----CEEEecC--c-----cccccccccC---CCCHHHHH-----HHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGI-----PAYALDG--D-----NLRNGINANL---AFSEEDRN-----ENV 80 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~-----~~~~ld~--D-----~i~~~l~~~~---~~~~~~~~-----~~~ 80 (272)
+|.+|+|.|++||||||+++.|++.|...|. .+.+... + .+++.+.... ..++.... ..+
T Consensus 2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~ 81 (212)
T PRK13974 2 KGKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRA 81 (212)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999976553 2222211 1 1122121110 11111000 011
Q ss_pred HHHHHHHHHHHhCCCeEEEcCCCCc------------HHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhh
Q psy17388 81 RRAAECAKMFAECGFIALCSFVSPT------------AAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAR 148 (272)
Q Consensus 81 ~~i~~~~~~~~~~g~~VI~d~~~~~------------~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r 148 (272)
+.+.......+..|.+||+|..... ..+...+...+...-.+.++|||+||++++.+|+..|...+..
T Consensus 82 ~~~~~~i~~~l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~~~R~dD~~e 161 (212)
T PRK13974 82 QHVSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRRKNRKPDRIE 161 (212)
T ss_pred HHHHHHHHHHHHCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcccCchh
Confidence 1222334556678889998753211 1112223222222224778999999999999998654211000
Q ss_pred hccccccccccccCCCC--CCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388 149 EGKIKSFTGVSQPYEAP--KNPDLILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 149 ~~~~~~~~~~~~~ye~~--~~~~~~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
.............|+.. ...-++||. +.+++++.++|.+.+.+
T Consensus 162 ~~~~~y~~~v~~~y~~y~~~~~~~~Ida-~~~~eeV~~~I~~~l~~ 206 (212)
T PRK13974 162 AEGIEFLERVAEGFALIAEERNWKVISA-DQSIETISNEIKETLLN 206 (212)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCEEEEeC-CCCHHHHHHHHHHHHHH
Confidence 00000011122223211 112246665 57899999999998875
No 87
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=99.20 E-value=1.4e-10 Score=97.29 Aligned_cols=114 Identities=18% Similarity=0.159 Sum_probs=75.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCC---------------CCHHHH--------
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLA---------------FSEEDR-------- 76 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~---------------~~~~~~-------- 76 (272)
+.+++|+++|.|||||||+|+.|++++ |+. .++.+|.+++.+....+ +.+...
T Consensus 1 ~~~~~i~i~G~~G~GKst~a~~l~~~~---~~~-~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~ 76 (197)
T PRK12339 1 MESTIHFIGGIPGVGKTSISGYIARHR---AID-IVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYL 76 (197)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhc---CCe-EEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHH
Confidence 357899999999999999999999998 443 46888887765442111 111000
Q ss_pred ---HHHHHHHHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeC-CHHHHHHhhhhhh
Q psy17388 77 ---NENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNT-PVEICEQRDVKGH 143 (272)
Q Consensus 77 ---~~~~~~i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~-~~e~~~~Rl~~r~ 143 (272)
...+..+..++..++.+|..||++........++.. ...+ ...+++.+ ++++..+|+..|.
T Consensus 77 ~q~~~v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~~----~~~~--v~~i~l~v~d~e~lr~Rl~~R~ 141 (197)
T PRK12339 77 DQARAIMPGINRVIRRALLNGEDLVIESLYFHPPMIDEN----RTNN--IRAFYLYIRDAELHRSRLADRI 141 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHHH----HhcC--eEEEEEEeCCHHHHHHHHHHHh
Confidence 122334556777888999999999877766655432 2223 34466654 6888889987663
No 88
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=99.19 E-value=3.2e-10 Score=94.46 Aligned_cols=113 Identities=13% Similarity=0.112 Sum_probs=66.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc-ccccccCCCCHHHHHHHH--------HHHHHHHHHHHh---
Q psy17388 25 LLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR-NGINANLAFSEEDRNENV--------RRAAECAKMFAE--- 92 (272)
Q Consensus 25 I~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~-~~l~~~~~~~~~~~~~~~--------~~i~~~~~~~~~--- 92 (272)
|+|+|+|||||||+|+.|++.+ ++.+++.|.+. +.+.......... ...+ ..+..+....+.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~-----~~~~i~~~~l~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~l~~~~l~~~~ 75 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY-----GLPHISTGDLLREEIASGTELGKKA-KEYIDSGKLVPDEIVIKLLKERLKKPD 75 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc-----CCeEEECcHHHHHHHhcCChHHHHH-HHHHHcCCccCHHHHHHHHHHHHhccc
Confidence 8999999999999999999998 67778876653 3222111100000 0000 011222222222
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh
Q psy17388 93 CGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH 143 (272)
Q Consensus 93 ~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~ 143 (272)
.+..+|.|+........+.+.......+.+.++|+|++|.+++.+|+.+|.
T Consensus 76 ~~~~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~ 126 (194)
T cd01428 76 CKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRR 126 (194)
T ss_pred ccCCEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 133455554333334445555544433357789999999999999997663
No 89
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.18 E-value=6.3e-10 Score=94.68 Aligned_cols=114 Identities=17% Similarity=0.166 Sum_probs=65.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc-cccccccCCCCHHHHHHHH--------HHHHHHHH-HHHh-
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL-RNGINANLAFSEEDRNENV--------RRAAECAK-MFAE- 92 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i-~~~l~~~~~~~~~~~~~~~--------~~i~~~~~-~~~~- 92 (272)
.|+|.|+|||||||+|+.|++.+ ++.+++.+++ ++.+..........+ ..+ ..+..+.. .+.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~-----~~~~is~~dl~r~~~~~~~~~~~~~~-~~~~~g~~~p~~~~~~~i~~~l~~~ 75 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY-----GIPHISTGDMLRAAVKAGTELGKEAK-SYMDAGELVPDEIVIGLVKERLAQP 75 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCcEEECCccHHHHHhccchHHHHHH-HHHHcCCcCCHHHHHHHHHHHHhcc
Confidence 58999999999999999999999 5777876544 432221111000000 000 00111121 1222
Q ss_pred -CCCeEEEcCCCCcHHHHHHHHHHHHhCCCc-eEEEEEeCCHHHHHHhhhhhh
Q psy17388 93 -CGFIALCSFVSPTAAARDRAREIHRNANLE-FFEVFVNTPVEICEQRDVKGH 143 (272)
Q Consensus 93 -~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~-~~~V~L~~~~e~~~~Rl~~r~ 143 (272)
.+..+|.|+.-........+.+.+...+.. ..+|+|+||.+++.+|+..|.
T Consensus 76 ~~~~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~ 128 (215)
T PRK00279 76 DCKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRR 128 (215)
T ss_pred CccCCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCc
Confidence 122456665322333444454445555543 378999999999999998764
No 90
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.18 E-value=3e-10 Score=96.14 Aligned_cols=42 Identities=24% Similarity=0.236 Sum_probs=35.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
.++.+|.|+|++||||||+++.|++.+. +..+.+++.|.+..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~--~~~~~~i~~D~~~~ 45 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG--DESIAVIPQDSYYK 45 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC--CCceEEEeCCcccc
Confidence 5788999999999999999999999983 34677788887643
No 91
>PRK04040 adenylate kinase; Provisional
Probab=99.17 E-value=2.4e-10 Score=95.35 Aligned_cols=163 Identities=14% Similarity=0.148 Sum_probs=79.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCC----------CCHHHHHHHHHHHHHHHHHHH
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLA----------FSEEDRNENVRRAAECAKMFA 91 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~----------~~~~~~~~~~~~i~~~~~~~~ 91 (272)
|++|+|+|.|||||||+++.|++.+. .+ +.+++.+.+........+ +......++.+......+...
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~-~~--~~~~~~g~~~~~~a~~~g~~~~~d~~r~l~~~~~~~~~~~a~~~i~~~~ 78 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK-ED--YKIVNFGDVMLEVAKEEGLVEHRDEMRKLPPEEQKELQREAAERIAEMA 78 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc-cC--CeEEecchHHHHHHHHcCCCCCHHHHhhCChhhhHHHHHHHHHHHHHhh
Confidence 67999999999999999999999983 12 334554444221111111 111121222222222223332
Q ss_pred hCCCeEEEcCCC----CcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhc----ccccccccccc--
Q psy17388 92 ECGFIALCSFVS----PTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREG----KIKSFTGVSQP-- 161 (272)
Q Consensus 92 ~~g~~VI~d~~~----~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~----~~~~~~~~~~~-- 161 (272)
.+..||.|+-. +...+...-...++.. .+..+|++.+++++..+|+.+. ..+.|.. .+.........
T Consensus 79 -~~~~~~~~~h~~i~~~~g~~~~~~~~~~~~l-~pd~ii~l~a~p~~i~~Rrl~d-~~R~R~~es~e~I~~~~~~a~~~a 155 (188)
T PRK04040 79 -GEGPVIVDTHATIKTPAGYLPGLPEWVLEEL-NPDVIVLIEADPDEILMRRLRD-ETRRRDVETEEDIEEHQEMNRAAA 155 (188)
T ss_pred -cCCCEEEeeeeeeccCCCCcCCCCHHHHhhc-CCCEEEEEeCCHHHHHHHHhcc-cccCCCCCCHHHHHHHHHHHHHHH
Confidence 23334444311 0000000011112222 2557899999999998887532 0011110 11111111111
Q ss_pred --CC-CCCCCcEEEeCCCCCHHHHHHHHHHHH
Q psy17388 162 --YE-APKNPDLILETVNVPVEKCANSVLDMI 190 (272)
Q Consensus 162 --ye-~~~~~~~~Idt~~~~~ee~~~~I~~~L 190 (272)
|. ....+.++|.+....++++++++.+.|
T Consensus 156 ~~~a~~~g~~~~iI~N~d~~~e~a~~~i~~ii 187 (188)
T PRK04040 156 MAYAVLTGATVKIVENREGLLEEAAEEIVEVL 187 (188)
T ss_pred HHHHHhcCCeEEEEECCCCCHHHHHHHHHHHh
Confidence 11 123466777665444999999998876
No 92
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=99.17 E-value=1.4e-10 Score=114.02 Aligned_cols=155 Identities=17% Similarity=0.177 Sum_probs=86.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc-----ccCCCCHHHHH-H-----------------
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN-----ANLAFSEEDRN-E----------------- 78 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~-----~~~~~~~~~~~-~----------------- 78 (272)
.++|.|.|++||||||+|+.|+++| +..++|++.+.+.+. .+..+.+.... +
T Consensus 442 ~~~i~i~g~~~~gks~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (661)
T PRK11860 442 VPVICIDGPTASGKGTVAARVAEAL-----GYHYLDSGALYRLTALAALRAGVALDDEAAIAALARGLPVRFEGDRIWLG 516 (661)
T ss_pred cceEEeeCCCCCCHHHHHHHHHHHh-----CCeEecHHHhhhHHHHHHHHcCcCCCCHHHHHHHHhcCCeeecCCeEEEC
Confidence 4589999999999999999999999 667799887765442 11222111100 0
Q ss_pred -------------------------HHHHHHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHH
Q psy17388 79 -------------------------NVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVE 133 (272)
Q Consensus 79 -------------------------~~~~i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e 133 (272)
..+.+....+.+.+.+. ||+++-.. ---.+.+ ..+.|||+++++
T Consensus 517 ~~~~~~~i~~~~v~~~~s~~a~~~~vr~~l~~~qr~~~~~~~-~v~eGRdi-------gtvv~p~---a~~kifl~a~~~ 585 (661)
T PRK11860 517 GEDVTDAIRTEAAGMGASRVSALPAVRAALLALQRSFRRLPG-LVADGRDM-------GTVIFPD---AALKVFLTASAE 585 (661)
T ss_pred CeEchhhhCcHHHHHHHHHHhCCHHHHHHHHHHHHHHhhCCC-EEEECCCC-------ccEECCC---CCeEEEEECChh
Confidence 00111122222322222 23222110 0000111 237899999999
Q ss_pred HHHHhhhhhhhhhhhhccccc-------cccccc-cCCCC---CCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388 134 ICEQRDVKGHYKKAREGKIKS-------FTGVSQ-PYEAP---KNPDLILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 134 ~~~~Rl~~r~~~~~r~~~~~~-------~~~~~~-~ye~~---~~~~~~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
++.+|+.+.+.++.....++. -+..+. ++..| ....++|||++++++|+++.|++.+++
T Consensus 586 ~Ra~Rr~~~~~~~~~~~~~~~~~~~~~~Rd~~d~~R~~~pl~~~~da~~idts~~~~~~v~~~i~~~i~~ 655 (661)
T PRK11860 586 ARAERRYKQLISKGISANIADLLADLEARDARDTQRSVAPLKPAQDALLLDNSDLTIEQAVAQVLDWWQE 655 (661)
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhHHhhcCCCCCCccCCCEEEEECCCCCHHHHHHHHHHHHHh
Confidence 999998654221111111110 011111 12223 334599999999999999999999976
No 93
>PRK12338 hypothetical protein; Provisional
Probab=99.17 E-value=2.7e-10 Score=101.52 Aligned_cols=166 Identities=14% Similarity=0.175 Sum_probs=95.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc--cCCC---------CHH----------H-H-
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA--NLAF---------SEE----------D-R- 76 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~--~~~~---------~~~----------~-~- 76 (272)
++|.+|+++|+|||||||+|++|++++ |+. .++++|.+++.+.. +..+ ... . .
T Consensus 2 ~~p~ii~i~G~sGsGKST~a~~la~~l---~~~-~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~ 77 (319)
T PRK12338 2 RKPYVILIGSASGIGKSTIASELARTL---NIK-HLIETDFIREVVRGIIGKEYAPALHKSSYNAYTALRDKENFKNNEE 77 (319)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHC---CCe-EEccChHHHHHHcCCCCcccCchhhcccHHHHhhcCCcccccchHH
Confidence 467899999999999999999999999 432 24578887764432 1101 000 0 0
Q ss_pred ----------HHHHHHHHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhh
Q psy17388 77 ----------NENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKK 146 (272)
Q Consensus 77 ----------~~~~~~i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~ 146 (272)
...+..+..++..+...|..||++++.-.+......+ ... ...+..+++..+.+...+|...|....
T Consensus 78 ~i~~gf~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~~~-~~~--~~~v~~~vl~~dee~h~~Rf~~R~~~~ 154 (319)
T PRK12338 78 LICAGFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDIEQ-FEE--NASIHFFILSADEEVHKERFVKRAMEI 154 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhhhh-hcc--cCceEEEEEECCHHHHHHHHHHhhhcc
Confidence 0011122334555567888888887654444433211 111 124445666789999999997764222
Q ss_pred hhhcc-cccccc---ccccCCC-CCCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388 147 AREGK-IKSFTG---VSQPYEA-PKNPDLILETVNVPVEKCANSVLDMIAAK 193 (272)
Q Consensus 147 ~r~~~-~~~~~~---~~~~ye~-~~~~~~~Idt~~~~~ee~~~~I~~~L~~~ 193 (272)
.|.++ .++|.. +.+.+.. ....++.+ +++.+.+++++++++.+.+.
T Consensus 155 ~r~~~~l~~f~~Ir~Iq~~l~~~A~e~~Vpv-I~N~did~Tv~~ile~I~e~ 205 (319)
T PRK12338 155 KRGGKQLEYFRENRIIHDHLVEQAREHNVPV-IKNDDIDCTVKKMLSYIREV 205 (319)
T ss_pred CCchhhhhChHHHHHHHHHHHHhHhhCCCce-eCCCcHHHHHHHHHHHHHhh
Confidence 23221 222222 2222221 12233433 34679999999999999875
No 94
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=99.15 E-value=7.5e-11 Score=97.94 Aligned_cols=159 Identities=16% Similarity=0.197 Sum_probs=82.5
Q ss_pred EEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC--c-----cccccccccCCCCHHHHHHH-----HHHHHHHHHHHHhCC
Q psy17388 27 FPGLSGAGKTSISFQIESYLIAQGIPAYALDG--D-----NLRNGINANLAFSEEDRNEN-----VRRAAECAKMFAECG 94 (272)
Q Consensus 27 l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~--D-----~i~~~l~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~g 94 (272)
|.|..||||||+++.|++.|...|+++..... + .++..+......+....... ...+...+...++.|
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~~~l~~g 80 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEKGYKVIITFPPGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIRPALKRG 80 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTEEEEEEESSTSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCcccccCCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 68999999999999999999988877333221 1 11221221222222111110 011223445567789
Q ss_pred CeEEEcCCCCc--------H-HHHHHHHHHHHhCC--CceEEEEEeCCHHHHHHhhhhhhhh-hhhhccccccccccccC
Q psy17388 95 FIALCSFVSPT--------A-AARDRAREIHRNAN--LEFFEVFVNTPVEICEQRDVKGHYK-KAREGKIKSFTGVSQPY 162 (272)
Q Consensus 95 ~~VI~d~~~~~--------~-~~r~~~~~~~~~~g--~~~~~V~L~~~~e~~~~Rl~~r~~~-~~r~~~~~~~~~~~~~y 162 (272)
.+||+|..... . ...+.+..+..... .|.++|||++|++++.+|+..|... .........+..++..|
T Consensus 81 ~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~~~~~~~~~~~~~~~~~~~y 160 (186)
T PF02223_consen 81 KIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRIAKRGEKDDEEEEDLEYLRRVREAY 160 (186)
T ss_dssp SEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHHHHTSSTTTTTTHHHHHHHHHHHHH
T ss_pred CEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCHHHHHHHHHcCCccchHHHHHHHHHHHHHHHH
Confidence 99999832100 0 01122223322222 5789999999999999999765320 00000001111222223
Q ss_pred CCC--CCCc-EEEeCCCCCHHHHHHHH
Q psy17388 163 EAP--KNPD-LILETVNVPVEKCANSV 186 (272)
Q Consensus 163 e~~--~~~~-~~Idt~~~~~ee~~~~I 186 (272)
... ..+. ++||+ +.+++++.++|
T Consensus 161 ~~l~~~~~~~~iid~-~~~~e~v~~~I 186 (186)
T PF02223_consen 161 LELAKDPNNWVIIDA-SRSIEEVHEQI 186 (186)
T ss_dssp HHHHHTTTTEEEEET-TS-HHHHHHHH
T ss_pred HHHHcCCCCEEEEEC-CCCHHHHHhhC
Confidence 211 1234 55665 57899998876
No 95
>PRK02496 adk adenylate kinase; Provisional
Probab=99.14 E-value=8.4e-10 Score=91.48 Aligned_cols=161 Identities=14% Similarity=0.149 Sum_probs=82.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc-cccccccCCCCHHHHHHHH--------HHHHHHHHHHHh-
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL-RNGINANLAFSEEDRNENV--------RRAAECAKMFAE- 92 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i-~~~l~~~~~~~~~~~~~~~--------~~i~~~~~~~~~- 92 (272)
+.|+|.|+|||||||+|+.|++.+ ++.+++.+++ +..+.......... ...+ ..+..+....+.
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~-----~~~~i~~~~~~~~~~~~~~~~g~~~-~~~~~~g~~~~~~~~~~~l~~~l~~ 75 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHL-----HIPHISTGDILRQAIKEQTPLGIKA-QGYMDKGELVPDQLVLDLVQERLQQ 75 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-----CCcEEEhHHHHHHHHhccChhHHHH-HHHHHCCCccCHHHHHHHHHHHHhC
Confidence 458999999999999999999998 4556766443 33221111100000 0000 001111221111
Q ss_pred --CCCeEEEcCCCCcHHHHHHHHHHHHhCC-CceEEEEEeCCHHHHHHhhhhhhhhhhhhc----ccccccc----cccc
Q psy17388 93 --CGFIALCSFVSPTAAARDRAREIHRNAN-LEFFEVFVNTPVEICEQRDVKGHYKKAREG----KIKSFTG----VSQP 161 (272)
Q Consensus 93 --~g~~VI~d~~~~~~~~r~~~~~~~~~~g-~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~----~~~~~~~----~~~~ 161 (272)
....+|.|+.-........+...+...+ .+..+|+|++|.+++.+|+..|........ ....+.. +...
T Consensus 76 ~~~~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~dd~~~~~~~r~~~y~~~~~~v~~~ 155 (184)
T PRK02496 76 PDAANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGRKDDTEEVIRRRLEVYREQTAPLIDY 155 (184)
T ss_pred cCccCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1223455543222333344444444332 356789999999999999976521100000 0000100 1112
Q ss_pred CCCCCCCcEEEeCCCCCHHHHHHHHHHHHH
Q psy17388 162 YEAPKNPDLILETVNVPVEKCANSVLDMIA 191 (272)
Q Consensus 162 ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~ 191 (272)
|... .--+.||. +.+++++.++|.+.|.
T Consensus 156 ~~~~-~~~~~Ida-~~~~~~V~~~i~~~l~ 183 (184)
T PRK02496 156 YRDR-QKLLTIDG-NQSVEAVTTELKAALA 183 (184)
T ss_pred HHhc-CCEEEEEC-CCCHHHHHHHHHHHhC
Confidence 2211 11256775 5699999999988763
No 96
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.13 E-value=3.3e-10 Score=95.06 Aligned_cols=148 Identities=15% Similarity=0.098 Sum_probs=82.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc-------------------cCC------------C
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA-------------------NLA------------F 71 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~-------------------~~~------------~ 71 (272)
++|.|+|++||||||+++.|++.+ ++.++|.|.+.+.+.. ..+ |
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~-----g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf 76 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQK-----GIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIF 76 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh-----CCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHh
Confidence 479999999999999999999988 5667888877543210 001 1
Q ss_pred CHHHHHHHHHHHH------HHHHHHHhC--CCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh
Q psy17388 72 SEEDRNENVRRAA------ECAKMFAEC--GFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH 143 (272)
Q Consensus 72 ~~~~~~~~~~~i~------~~~~~~~~~--g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~ 143 (272)
.+.....++..+. .+.+.+... ...|+++....+.. .+... -..+|+++||.+++.+|+.+|.
T Consensus 77 ~d~~~~~~l~~i~hP~i~~~~~~~~~~~~~~~~vv~e~pll~E~---~~~~~------~D~ii~V~a~~e~r~~Rl~~R~ 147 (195)
T PRK14730 77 NDPEERRWLENLIHPYVRERFEEELAQLKSNPIVVLVIPLLFEA---KLTDL------CSEIWVVDCSPEQQLQRLIKRD 147 (195)
T ss_pred CCHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeHHhcCc---chHhC------CCEEEEEECCHHHHHHHHHHcC
Confidence 1112222222221 112222222 33555543222111 11112 2367999999999999997652
Q ss_pred -hhhhhhccccccccccccCC---CCCCCcEEEeCCCCCHHHHHHHHHHHH
Q psy17388 144 -YKKAREGKIKSFTGVSQPYE---APKNPDLILETVNVPVEKCANSVLDMI 190 (272)
Q Consensus 144 -~~~~r~~~~~~~~~~~~~ye---~~~~~~~~Idt~~~~~ee~~~~I~~~L 190 (272)
..... . ...+..++. ....++++|+++ .++++..+++.+.+
T Consensus 148 g~s~e~---~--~~ri~~Q~~~~~k~~~aD~vI~N~-g~~e~l~~qv~~~l 192 (195)
T PRK14730 148 GLTEEE---A--EARINAQWPLEEKVKLADVVLDNS-GDLEKLYQQVDQLL 192 (195)
T ss_pred CCCHHH---H--HHHHHhCCCHHHHHhhCCEEEECC-CCHHHHHHHHHHHH
Confidence 11110 0 011122221 123678999875 48999888887665
No 97
>PRK06547 hypothetical protein; Provisional
Probab=99.13 E-value=2.9e-10 Score=93.46 Aligned_cols=112 Identities=17% Similarity=0.203 Sum_probs=67.2
Q ss_pred cCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHH---H--------
Q psy17388 18 EGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAE---C-------- 86 (272)
Q Consensus 18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~---~-------- 86 (272)
.+.++.+|.|+|+|||||||+|+.|++.+ ++.+++.|.+...... ... ........+.. .
T Consensus 11 ~~~~~~~i~i~G~~GsGKTt~a~~l~~~~-----~~~~~~~d~~~~~~~~---~~~-~~~~l~~~~l~~g~~~~~~yd~~ 81 (172)
T PRK06547 11 CGGGMITVLIDGRSGSGKTTLAGALAART-----GFQLVHLDDLYPGWHG---LAA-ASEHVAEAVLDEGRPGRWRWDWA 81 (172)
T ss_pred hcCCCEEEEEECCCCCCHHHHHHHHHHHh-----CCCeecccceeccccc---CCh-HHHHHHHHHHhCCCCceecCCCC
Confidence 35678899999999999999999999998 4556777776543211 110 00000000100 0
Q ss_pred ----HH-HHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388 87 ----AK-MFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG 142 (272)
Q Consensus 87 ----~~-~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r 142 (272)
.. .....+.+||++++... +..++.++++.| ..+.|||++|.+++.+|+.+|
T Consensus 82 ~~~~~~~~~l~~~~vVIvEG~~al---~~~~r~~~d~~g-~v~~I~ld~~~~vr~~R~~~R 138 (172)
T PRK06547 82 NNRPGDWVSVEPGRRLIIEGVGSL---TAANVALASLLG-EVLTVWLDGPEALRKERALAR 138 (172)
T ss_pred CCCCCCcEEeCCCCeEEEEehhhc---cHHHHHHhccCC-CEEEEEEECCHHHHHHHHHhc
Confidence 00 00112345666655443 233455555433 568899999999999999655
No 98
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.11 E-value=2.8e-10 Score=95.36 Aligned_cols=149 Identities=13% Similarity=0.175 Sum_probs=81.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc-c----------C---------C----------CC
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA-N----------L---------A----------FS 72 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~-~----------~---------~----------~~ 72 (272)
.+|.|+|++||||||+++.|++ + ++.++|.|.+.+.+.. + . . |.
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~-----g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~ 76 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-L-----GAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFS 76 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-c-----CCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhC
Confidence 5899999999999999999998 6 4667888876443210 0 0 0 22
Q ss_pred HHHHHHHHHHHH------HHHHHHHhC--CCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh-
Q psy17388 73 EEDRNENVRRAA------ECAKMFAEC--GFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH- 143 (272)
Q Consensus 73 ~~~~~~~~~~i~------~~~~~~~~~--g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~- 143 (272)
......++..+. ++.+.+... ...||++....+. ..+... ...+|+++||++++.+|+.+|.
T Consensus 77 ~~~~~~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~pll~e---~~~~~~------~D~vi~V~a~~e~~~~Rl~~R~~ 147 (194)
T PRK00081 77 DPEARKKLEAILHPLIREEILEQLQEAESSPYVVLDIPLLFE---NGLEKL------VDRVLVVDAPPETQLERLMARDG 147 (194)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcccCCEEEEEehHhhc---CCchhh------CCeEEEEECCHHHHHHHHHHcCC
Confidence 112222222221 111122222 2456555322211 111112 2377999999999999996652
Q ss_pred hhhhhhccccccccccccC---CCCCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388 144 YKKAREGKIKSFTGVSQPY---EAPKNPDLILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 144 ~~~~r~~~~~~~~~~~~~y---e~~~~~~~~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
+... .. ...+..+. +....++++|+|+ .++++..+++.+.+..
T Consensus 148 ~s~e---~~--~~ri~~Q~~~~~~~~~ad~vI~N~-g~~e~l~~qv~~i~~~ 193 (194)
T PRK00081 148 LSEE---EA--EAIIASQMPREEKLARADDVIDNN-GDLEELRKQVERLLQE 193 (194)
T ss_pred CCHH---HH--HHHHHHhCCHHHHHHhCCEEEECC-CCHHHHHHHHHHHHHh
Confidence 1110 00 01111111 1123568999985 4899999998887753
No 99
>PRK06696 uridine kinase; Validated
Probab=99.11 E-value=7.8e-11 Score=100.87 Aligned_cols=45 Identities=18% Similarity=0.316 Sum_probs=39.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
+.+|.+|.|+|+|||||||+|+.|++.|...|..+..+..|++..
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~ 63 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHN 63 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccC
Confidence 457889999999999999999999999987777888888887754
No 100
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=99.11 E-value=9.1e-10 Score=94.03 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=22.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
+|+|.|..||||||+++.|++.+.
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~ 24 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLG 24 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999983
No 101
>PRK13808 adenylate kinase; Provisional
Probab=99.10 E-value=1.1e-09 Score=98.43 Aligned_cols=164 Identities=13% Similarity=0.076 Sum_probs=85.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc-ccccccccCCCCHH-----------HHHHHHHHHHHHHHHHH
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN-LRNGINANLAFSEE-----------DRNENVRRAAECAKMFA 91 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~-i~~~l~~~~~~~~~-----------~~~~~~~~i~~~~~~~~ 91 (272)
-|+|.|+|||||||+|+.|++.+ ++.+++.++ ++..+......... ..+.....+.+.....
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~y-----gl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~- 75 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQY-----GIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQP- 75 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcc-
Confidence 48899999999999999999998 567788654 44333211111000 0011111111111111
Q ss_pred hCCCeEEEcCCCCcHHHHHHHHHHHHhCC-CceEEEEEeCCHHHHHHhhhhhhhhh------hhhcc-ccccccccccCC
Q psy17388 92 ECGFIALCSFVSPTAAARDRAREIHRNAN-LEFFEVFVNTPVEICEQRDVKGHYKK------AREGK-IKSFTGVSQPYE 163 (272)
Q Consensus 92 ~~g~~VI~d~~~~~~~~r~~~~~~~~~~g-~~~~~V~L~~~~e~~~~Rl~~r~~~~------~r~~~-~~~~~~~~~~ye 163 (272)
....-+|+|+.-......+.+..++...+ .+.++|+|++|++++++|+..|.... .|... .+.+......|.
T Consensus 76 ~~~~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~~~R~DD~~E~i~kRL~~Y~ 155 (333)
T PRK13808 76 DAANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARGEEVRADDTPEVLAKRLASYR 155 (333)
T ss_pred cccCCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCCccCCCCCHHHHHHHHHHHH
Confidence 11223555542222233334444444333 36689999999999999997763210 01110 000100001121
Q ss_pred C--------CCCC--cEEEeCCCCCHHHHHHHHHHHHHhCC
Q psy17388 164 A--------PKNP--DLILETVNVPVEKCANSVLDMIAAKG 194 (272)
Q Consensus 164 ~--------~~~~--~~~Idt~~~~~ee~~~~I~~~L~~~~ 194 (272)
. +... -+.||. ..+++++.+.|...|...+
T Consensus 156 ~~t~PLl~~Y~e~~~lv~IDa-~~siEEV~eeI~~~L~~~~ 195 (333)
T PRK13808 156 AQTEPLVHYYSEKRKLLTVDG-MMTIDEVTREIGRVLAAVG 195 (333)
T ss_pred HHhHHHHHHhhccCcEEEEEC-CCCHHHHHHHHHHHHHHHh
Confidence 1 0111 246664 5799999999999998653
No 102
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=99.10 E-value=1.2e-09 Score=95.30 Aligned_cols=143 Identities=19% Similarity=0.247 Sum_probs=86.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHH--hCCCeEEEc
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFA--ECGFIALCS 100 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~--~~g~~VI~d 100 (272)
.+|+++|+|||||||..++|... +++.+| ++...+ +..+.+....-. .....+++|
T Consensus 2 ~~vIiTGlSGaGKs~Al~~lED~------Gy~cvD--NlP~~L--------------l~~l~~~~~~~~~~~~~~Ai~iD 59 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRALEDL------GYYCVD--NLPPSL--------------LPQLIELLAQSNSKIEKVAIVID 59 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHHHhc------CeeEEc--CCcHHH--------------HHHHHHHHHhcCCCCceEEEEEe
Confidence 58999999999999999999986 566665 332211 111211111100 112344555
Q ss_pred CCCC-cHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcccc-----ccccccccCC--CC--CCCcE
Q psy17388 101 FVSP-TAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIK-----SFTGVSQPYE--AP--KNPDL 170 (272)
Q Consensus 101 ~~~~-~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~-----~~~~~~~~ye--~~--~~~~~ 170 (272)
.-+. +..........+++.+..+.++||+|+.+++.+|-. ..|..+.- ..+++...-+ .| ..+++
T Consensus 60 ~R~~~~~~~~~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~-----eTRR~HPL~~~~~~le~I~~Er~~L~~lr~~Ad~ 134 (284)
T PF03668_consen 60 IRSREFFEDLFEALDELRKKGIDVRILFLDASDEVLIRRYS-----ETRRRHPLSSDGSLLEAIEKERELLEPLRERADL 134 (284)
T ss_pred CCChHHHHHHHHHHHHHHhcCCceEEEEEECChHHHHHHHH-----hccCCCCCCCCCCcHHHHHHHHHHHHHHHHhCCE
Confidence 4332 222222222334456889999999999999999974 22322211 0122221111 11 46899
Q ss_pred EEeCCCCCHHHHHHHHHHHHHh
Q psy17388 171 ILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 171 ~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
+|||+++++.+..+.|.+.+..
T Consensus 135 vIDTs~l~~~~Lr~~i~~~~~~ 156 (284)
T PF03668_consen 135 VIDTSNLSVHQLRERIRERFGG 156 (284)
T ss_pred EEECCCCCHHHHHHHHHHHhcc
Confidence 9999999999999999998874
No 103
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.10 E-value=4e-10 Score=89.41 Aligned_cols=103 Identities=19% Similarity=0.165 Sum_probs=57.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEcCCC
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIALCSFVS 103 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI~d~~~ 103 (272)
+|+|+|+|||||||+|+.|++.+ +..+++.|.+.........-...........+......+...+..|+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~-----~~~~~~~~~i~~e~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~Vidg~~~ 75 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL-----GLPYLDTGGIRTEEVGKLASEVAAIPEVRKALDERQRELAKKPGIVLEGRDI 75 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-----CCceeccccCCHHHHHHHHHHhcccHhHHHHHHHHHHHHhhCCCEEEEeeee
Confidence 58999999999999999999999 4556676643221100000000000011112223333454555555533222
Q ss_pred CcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388 104 PTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG 142 (272)
Q Consensus 104 ~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r 142 (272)
.+ + ... ...+.|||++|++++.+|+.+|
T Consensus 76 ~~------~--~~~---~~~~~i~l~~~~~~r~~R~~~r 103 (147)
T cd02020 76 GT------V--VFP---DADLKIFLTASPEVRAKRRAKQ 103 (147)
T ss_pred ee------E--EcC---CCCEEEEEECCHHHHHHHHHHH
Confidence 11 0 011 1347799999999999999764
No 104
>KOG3347|consensus
Probab=99.10 E-value=3.8e-10 Score=88.74 Aligned_cols=149 Identities=13% Similarity=0.142 Sum_probs=79.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC-ccccccccccCCCCHHHHHHH--HHHHHHHHHHHHhCCCeE
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG-DNLRNGINANLAFSEEDRNEN--VRRAAECAKMFAECGFIA 97 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~-D~i~~~l~~~~~~~~~~~~~~--~~~i~~~~~~~~~~g~~V 97 (272)
..+.|+++|.||+||||+|.+|++.+ | ..++.. |.+++... -.+|+..-.-.. -+.+...+..++..|.+|
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~---~--~~~i~isd~vkEn~l-~~gyDE~y~c~i~DEdkv~D~Le~~m~~Gg~I 79 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKT---G--LEYIEISDLVKENNL-YEGYDEEYKCHILDEDKVLDELEPLMIEGGNI 79 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHh---C--CceEehhhHHhhhcc-hhcccccccCccccHHHHHHHHHHHHhcCCcE
Confidence 34579999999999999999999998 4 444443 22222110 011111000000 012223334444556666
Q ss_pred EEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccc-------cccccccCCCCCCCcE
Q psy17388 98 LCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKS-------FTGVSQPYEAPKNPDL 170 (272)
Q Consensus 98 I~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~-------~~~~~~~ye~~~~~~~ 170 (272)
|--....+ .-+++. .++|.|+||.+++..|+..|.|......+.-. .+..+..|. +++
T Consensus 80 VDyHgCd~--Fperwf---------dlVvVLr~~~s~LY~RL~sRgY~e~Ki~eNiecEIfgv~~eea~eSy~----~~i 144 (176)
T KOG3347|consen 80 VDYHGCDF--FPERWF---------DLVVVLRTPNSVLYDRLKSRGYSEKKIKENIECEIFGVVLEEARESYS----PKI 144 (176)
T ss_pred EeecccCc--cchhhe---------eEEEEEecCchHHHHHHHHcCCCHHHHhhhcchHHHHHHHHHHHHHcC----Ccc
Confidence 63222221 012222 26789999999999999988775533322111 111233443 346
Q ss_pred EEeCCCCCHHHHHHHHHHHH
Q psy17388 171 ILETVNVPVEKCANSVLDMI 190 (272)
Q Consensus 171 ~Idt~~~~~ee~~~~I~~~L 190 (272)
+..-.+.+.++....|-..+
T Consensus 145 V~eL~s~~~Eem~~ni~ri~ 164 (176)
T KOG3347|consen 145 VVELQSETKEEMESNISRIL 164 (176)
T ss_pred eeecCcCCHHHHHHHHHHHH
Confidence 66555666777666654433
No 105
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=99.09 E-value=7.8e-10 Score=92.32 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=21.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L 46 (272)
+|+|.|.+||||||+++.|++.+
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~ 23 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHL 23 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 106
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.08 E-value=2.3e-09 Score=89.29 Aligned_cols=160 Identities=13% Similarity=0.066 Sum_probs=84.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc---cCCCCHHHHHHHHHH--------------
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA---NLAFSEEDRNENVRR-------------- 82 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~---~~~~~~~~~~~~~~~-------------- 82 (272)
.+|++|+|+|+|||||||+++.|.+..+. +.+.-...-|..-.. +..|..-.+++....
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~----~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g 77 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEHPD----FLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHD 77 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcCCc----cccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECC
Confidence 36789999999999999999999887631 111101111111000 011111111111111
Q ss_pred -----HHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeC-CHHHHHHhhhhhhhhhhhhccccc-c
Q psy17388 83 -----AAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNT-PVEICEQRDVKGHYKKAREGKIKS-F 155 (272)
Q Consensus 83 -----i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~-~~e~~~~Rl~~r~~~~~r~~~~~~-~ 155 (272)
-.+.+...+++|.+||++. .+ .....++. ..+...+.||+.+ +.+++.+|+.+|.... ..++.. +
T Consensus 78 ~~YGt~~~~i~~~~~~g~~~i~d~-~~--~g~~~l~~---~~~~~~~~Ifi~pps~e~l~~RL~~R~~~s--~e~i~~Rl 149 (186)
T PRK14737 78 NYYGTPKAFIEDAFKEGRSAIMDI-DV--QGAKIIKE---KFPERIVTIFIEPPSEEEWEERLIHRGTDS--EESIEKRI 149 (186)
T ss_pred eeecCcHHHHHHHHHcCCeEEEEc-CH--HHHHHHHH---hCCCCeEEEEEECCCHHHHHHHHHhcCCCC--HHHHHHHH
Confidence 1233555678898888773 22 22233332 2333346799988 4799999986652100 000110 0
Q ss_pred ccccccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388 156 TGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAK 193 (272)
Q Consensus 156 ~~~~~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~ 193 (272)
.......+....+|++|+++ +++++.+++.+.|..+
T Consensus 150 ~~~~~e~~~~~~~D~vI~N~--dle~a~~ql~~ii~~~ 185 (186)
T PRK14737 150 ENGIIELDEANEFDYKIIND--DLEDAIADLEAIICGK 185 (186)
T ss_pred HHHHHHHhhhccCCEEEECc--CHHHHHHHHHHHHhcC
Confidence 00011111223578999886 7999999999888654
No 107
>PRK14528 adenylate kinase; Provisional
Probab=99.08 E-value=1.6e-09 Score=90.23 Aligned_cols=159 Identities=14% Similarity=0.098 Sum_probs=82.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc-cccccccCCCCHHHHHHHHH--------HHHHHH-HHHHh
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL-RNGINANLAFSEEDRNENVR--------RAAECA-KMFAE 92 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i-~~~l~~~~~~~~~~~~~~~~--------~i~~~~-~~~~~ 92 (272)
+.|+|.|+|||||||+|+.|++.+ ++.+++.+++ +..+..+..+.... ...+. .+..+. ..+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~-----~~~~is~~~~lr~~~~~~~~~g~~~-~~~~~~g~lvp~~~~~~~~~~~l~~ 75 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL-----SIPQISTGDILREAVKNQTAMGIEA-KRYMDAGDLVPDSVVIGIIKDRIRE 75 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh-----CCCeeeCCHHHHHHhhcCCHHHHHH-HHHHhCCCccCHHHHHHHHHHHHhC
Confidence 358999999999999999999998 4555665554 44332221111000 00000 001111 12222
Q ss_pred --CCCeEEEcCCCCcHHHHHHHHHHHHhC-CCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccc-ccc-----------
Q psy17388 93 --CGFIALCSFVSPTAAARDRAREIHRNA-NLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKS-FTG----------- 157 (272)
Q Consensus 93 --~g~~VI~d~~~~~~~~r~~~~~~~~~~-g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~-~~~----------- 157 (272)
....+|.|+.-......+.+..++... ..+..+|+|+||.+++.+|+.+|.....|..+... +..
T Consensus 76 ~~~~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y~~~~~p 155 (186)
T PRK14528 76 ADCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEGRADDNEATIKNRLDNYNKKTLP 155 (186)
T ss_pred cCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccCCCCCCHHHHHHHHHHHHHHhHH
Confidence 123355554322223333344444322 23567899999999999999877443333221110 100
Q ss_pred ccccCCCCCCCcEEEeCCCCCHHHHHHHHHHH
Q psy17388 158 VSQPYEAPKNPDLILETVNVPVEKCANSVLDM 189 (272)
Q Consensus 158 ~~~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~ 189 (272)
+.+.|... .--+.||. +.+++++.+.|...
T Consensus 156 v~~~y~~~-~~~~~i~~-~~~~~~v~~~~~~~ 185 (186)
T PRK14528 156 LLDFYAAQ-KKLSQVNG-VGSLEEVTSLIQKE 185 (186)
T ss_pred HHHHHHhC-CCEEEEEC-CCCHHHHHHHHHHh
Confidence 11122211 12356664 56899988888764
No 108
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.06 E-value=4.2e-10 Score=93.74 Aligned_cols=144 Identities=10% Similarity=0.126 Sum_probs=78.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc-c------------------CC-----------CCH
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA-N------------------LA-----------FSE 73 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~-~------------------~~-----------~~~ 73 (272)
+|.|+|.+||||||+++.|++.. ++.++|.|.+.+.+.. + .+ |..
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~-----~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~ 75 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKY-----HFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFND 75 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc-----CCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCC
Confidence 48999999999999999999975 4667888877432210 0 00 221
Q ss_pred HHHHHHH---------HHHHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh-
Q psy17388 74 EDRNENV---------RRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH- 143 (272)
Q Consensus 74 ~~~~~~~---------~~i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~- 143 (272)
......+ +.+.+......+.|..|+.+....+. ..+...+ ..+|++++|.+++.+|+.+|.
T Consensus 76 ~~~~~~le~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e---~~~~~~~------D~vv~V~~~~~~~~~Rl~~R~~ 146 (188)
T TIGR00152 76 PEELKWLNNLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFE---NKLRSLC------DRVIVVDVSPQLQLERLMQRDN 146 (188)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhh---CCcHHhC------CEEEEEECCHHHHHHHHHHcCC
Confidence 1111111 11222222222344456655322110 1122222 267999999999999997652
Q ss_pred hhhhhhcccccccccccc---CCCCCCCcEEEeCCCCCHHHHHHHHH
Q psy17388 144 YKKAREGKIKSFTGVSQP---YEAPKNPDLILETVNVPVEKCANSVL 187 (272)
Q Consensus 144 ~~~~r~~~~~~~~~~~~~---ye~~~~~~~~Idt~~~~~ee~~~~I~ 187 (272)
.... .+. ..+..+ ++....++++|+++ .++++...++.
T Consensus 147 ~s~~---~~~--~r~~~q~~~~~~~~~ad~vI~N~-~~~e~l~~~~~ 187 (188)
T TIGR00152 147 LTEE---EVQ--KRLASQMDIEERLARADDVIDNS-ATLADLVKQLE 187 (188)
T ss_pred CCHH---HHH--HHHHhcCCHHHHHHhCCEEEECC-CCHHHHHHHHh
Confidence 1100 000 001111 11123578999875 58998887764
No 109
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.06 E-value=1.6e-09 Score=91.22 Aligned_cols=156 Identities=10% Similarity=0.109 Sum_probs=85.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccccc----------C------------------CC
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINAN----------L------------------AF 71 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~----------~------------------~~ 71 (272)
..|..|.|+|.+||||||+++.|++.+ ++.++|.|.+.+.+... . -|
T Consensus 4 ~~~~~IglTG~iGsGKStv~~~l~~~l-----g~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF 78 (204)
T PRK14733 4 INTYPIGITGGIASGKSTATRILKEKL-----NLNVVCADTISREITKKPSVIKKIAEKFGDEIVMNKQINRAMLRAIIT 78 (204)
T ss_pred CceEEEEEECCCCCCHHHHHHHHHHHc-----CCeEEeccHHHHHHHCchHHHHHHHHHhCHHhccCCCcCHHHHHHHHh
Confidence 456789999999999999999999887 45578888764433110 0 02
Q ss_pred CHHHHHHHHHHHH------HHHHHHHhC-CCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh-
Q psy17388 72 SEEDRNENVRRAA------ECAKMFAEC-GFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH- 143 (272)
Q Consensus 72 ~~~~~~~~~~~i~------~~~~~~~~~-g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~- 143 (272)
........+..+. ++.+.+... ...|+.+..-.+.... ..... -..+|+++||.+++.+|+..|.
T Consensus 79 ~d~~~~~~Le~i~HP~V~~~~~~~~~~~~~~~vv~eipLL~E~~~-~~~~~------~D~vi~V~a~~e~ri~Rl~~Rd~ 151 (204)
T PRK14733 79 ESKEAKKWLEDYLHPVINKEIKKQVKESDTVMTIVDIPLLGPYNF-RHYDY------LKKVIVIKADLETRIRRLMERDG 151 (204)
T ss_pred CCHHHHHHHHhhhhHHHHHHHHHHHHhcCCCeEEEEechhhhccC-chhhh------CCEEEEEECCHHHHHHHHHHcCC
Confidence 2222222222221 111222222 2355555422111000 00011 2267999999999999996551
Q ss_pred hhhhhhccccccccccccCC---CCCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388 144 YKKAREGKIKSFTGVSQPYE---APKNPDLILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 144 ~~~~r~~~~~~~~~~~~~ye---~~~~~~~~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
...... ...+..+.. .-..+|++|++++.+.++.-.++...++.
T Consensus 152 ~s~~~a-----~~ri~~Q~~~eek~~~aD~VI~N~g~~~~~l~~~~~~~~~~ 198 (204)
T PRK14733 152 KNRQQA-----VAFINLQISDKEREKIADFVIDNTELTDQELESKLITTINE 198 (204)
T ss_pred CCHHHH-----HHHHHhCCCHHHHHHhCCEEEECcCCCHHHHHHHHHHHHHH
Confidence 111110 011222221 12357899999766888888888777664
No 110
>PRK08118 topology modulation protein; Reviewed
Probab=99.06 E-value=1.2e-09 Score=89.46 Aligned_cols=98 Identities=18% Similarity=0.185 Sum_probs=58.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEcCCC
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIALCSFVS 103 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI~d~~~ 103 (272)
-|+|+|+|||||||+|+.|++.+ |.+ +++.|.+... .++....+.+ .....+.+.+....| +++..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l---~~~--~~~lD~l~~~----~~w~~~~~~~----~~~~~~~~~~~~~wV-idG~~ 68 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKL---NIP--VHHLDALFWK----PNWEGVPKEE----QITVQNELVKEDEWI-IDGNY 68 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCC--ceecchhhcc----cCCcCCCHHH----HHHHHHHHhcCCCEE-EeCCc
Confidence 58999999999999999999999 444 4555544321 1111111111 122233344444444 45433
Q ss_pred CcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh
Q psy17388 104 PTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH 143 (272)
Q Consensus 104 ~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~ 143 (272)
+ ...+.. +.. ...+|||++|.+++..|+.+|.
T Consensus 69 ~--~~~~~~---l~~---~d~vi~Ld~p~~~~~~R~~~R~ 100 (167)
T PRK08118 69 G--GTMDIR---LNA---ADTIIFLDIPRTICLYRAFKRR 100 (167)
T ss_pred c--hHHHHH---HHh---CCEEEEEeCCHHHHHHHHHHHH
Confidence 3 222211 222 3478999999999999998774
No 111
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.06 E-value=2e-10 Score=94.77 Aligned_cols=156 Identities=14% Similarity=0.132 Sum_probs=80.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc---cCC--C-CHHHHH----------------HH
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA---NLA--F-SEEDRN----------------EN 79 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~---~~~--~-~~~~~~----------------~~ 79 (272)
+.+|+|.|++||||||+++.|++.++...... ....++.... ... | +..... .+
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~----~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSI----SATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNY 76 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCccccccc----cceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCee
Confidence 46899999999999999999999763211110 1111111000 000 0 000000 01
Q ss_pred HHHHHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccc-cccc
Q psy17388 80 VRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKS-FTGV 158 (272)
Q Consensus 80 ~~~i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~-~~~~ 158 (272)
+......+...+..|.+||++... .. ...+.+..+.++.++++.++.+++.+|+.+|..... ..+.. +...
T Consensus 77 y~~~~~~i~~~~~~g~~vi~d~~~---~~---~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~r~~~~~--~~i~~rl~~~ 148 (180)
T TIGR03263 77 YGTPKSPVEEALAAGKDVLLEIDV---QG---ARQVKKKFPDAVSIFILPPSLEELERRLRKRGTDSE--EVIERRLAKA 148 (180)
T ss_pred eCCcHHHHHHHHHCCCeEEEECCH---HH---HHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCH--HHHHHHHHHH
Confidence 111124456667789888887432 11 122223333334445556778999999866532100 00100 0111
Q ss_pred cccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHH
Q psy17388 159 SQPYEAPKNPDLILETVNVPVEKCANSVLDMIA 191 (272)
Q Consensus 159 ~~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~ 191 (272)
....+.....+++|+++ ++++..+++.+.+.
T Consensus 149 ~~~~~~~~~~d~~i~n~--~~~~~~~~l~~~~~ 179 (180)
T TIGR03263 149 KKEIAHADEFDYVIVND--DLEKAVEELKSIIL 179 (180)
T ss_pred HHHHhccccCcEEEECC--CHHHHHHHHHHHHh
Confidence 11122233578888874 78999999988775
No 112
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=99.05 E-value=8.6e-10 Score=91.85 Aligned_cols=25 Identities=24% Similarity=0.569 Sum_probs=23.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++|+|.|+.|+||||+|++|++++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 4789999999999999999999999
No 113
>PRK06761 hypothetical protein; Provisional
Probab=99.05 E-value=8.7e-10 Score=97.03 Aligned_cols=118 Identities=14% Similarity=0.225 Sum_probs=79.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEE-ecCccccc-cccccCCCCHHHHHHHHHHHHHHHHHHH----hCCC
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYA-LDGDNLRN-GINANLAFSEEDRNENVRRAAECAKMFA----ECGF 95 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~-ld~D~i~~-~l~~~~~~~~~~~~~~~~~i~~~~~~~~----~~g~ 95 (272)
+++|+|+|+|||||||+++.|++.+...|+++.. .+++.... .+.....++..++..++++...+++.+. ..|.
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p~d~~~~~~~~~eer~~~l~~~~~f~~~l~~~~~~~g~ 82 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHPADYDGVACFTKEEFDRLLSNYPDFKEVLLKNVLKKGD 82 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCchhhccccCCCHHHHHHHHHhhhHHHHHHHHHHHHcCC
Confidence 5689999999999999999999999766665543 44443222 2333456788888888888877555444 4566
Q ss_pred eEEEcCCCCcHHHHHHHHH-HHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388 96 IALCSFVSPTAAARDRARE-IHRNANLEFFEVFVNTPVEICEQRDVKG 142 (272)
Q Consensus 96 ~VI~d~~~~~~~~r~~~~~-~~~~~g~~~~~V~L~~~~e~~~~Rl~~r 142 (272)
.+|+.+......+|+.++. .+... .+..+| ++|.+...+|...|
T Consensus 83 ~~i~~~~~l~~~yr~~~~~~~~~~~--~v~~~h-~~p~e~i~~R~~~r 127 (282)
T PRK06761 83 YYLLPYRKIKNEFGDQFSDELFNDI--SKNDIY-ELPFDKNTELITDR 127 (282)
T ss_pred eEEEEehhhhHHHhhhhhhhhcccc--eeeeee-cCCHHHHHHHHHHH
Confidence 6665554444455665553 11111 234477 99999999999655
No 114
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.04 E-value=6.8e-09 Score=85.74 Aligned_cols=157 Identities=17% Similarity=0.208 Sum_probs=84.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc-ccccccCCCCHHHHH----------HHH-HHHHHHHHHHH
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR-NGINANLAFSEEDRN----------ENV-RRAAECAKMFA 91 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~-~~l~~~~~~~~~~~~----------~~~-~~i~~~~~~~~ 91 (272)
.|+|.|+|||||||+|+.|++++ ++.++|++++. ........+...... ..+ ..+.......
T Consensus 2 riiilG~pGaGK~T~A~~La~~~-----~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~- 75 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL-----GLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEA- 75 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh-----CCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhh-
Confidence 58999999999999999999998 78899976553 333221111100000 001 1111111111
Q ss_pred hCCCeEEEcCCCCcHHHHHHHHHHHHhCC-CceEEEEEeCCHHHHHHhhhhhhhhhhhhcccc-ccccccccCCCCCCC-
Q psy17388 92 ECGFIALCSFVSPTAAARDRAREIHRNAN-LEFFEVFVNTPVEICEQRDVKGHYKKAREGKIK-SFTGVSQPYEAPKNP- 168 (272)
Q Consensus 92 ~~g~~VI~d~~~~~~~~r~~~~~~~~~~g-~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~-~~~~~~~~ye~~~~~- 168 (272)
+....+|.++.--+....+.+...+...| -...++.++++.+.+..|+..|.- |..+.+ .+......|..+..|
T Consensus 76 d~~~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~---r~dd~~~~~~~R~~~y~~~~~pl 152 (178)
T COG0563 76 DCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRV---REDDNEETVKKRLKVYHEQTAPL 152 (178)
T ss_pred cccCeEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccc---cccCCHHHHHHHHHHHHhcccch
Confidence 22225666654444444555555655544 244678999999999999966521 110000 000011112211111
Q ss_pred ----cEEEeCCCCCHHHHHHHHHHHH
Q psy17388 169 ----DLILETVNVPVEKCANSVLDMI 190 (272)
Q Consensus 169 ----~~~Idt~~~~~ee~~~~I~~~L 190 (272)
.+.||. ..+++++.+.+.+.+
T Consensus 153 i~~y~~~id~-~~~i~~v~~~i~~~l 177 (178)
T COG0563 153 IEYYSVTIDG-SGEIEEVLADILKAL 177 (178)
T ss_pred hhhheeeccC-CCCHHHHHHHHHHhh
Confidence 155664 568999999888765
No 115
>PRK07667 uridine kinase; Provisional
Probab=99.03 E-value=3e-09 Score=89.02 Aligned_cols=43 Identities=26% Similarity=0.344 Sum_probs=37.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
.+.+|.|+|+|||||||+|+.|++.|...|.++..++.|.+..
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~ 58 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIV 58 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccc
Confidence 3479999999999999999999999988888888888887643
No 116
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=99.03 E-value=1.3e-09 Score=108.88 Aligned_cols=41 Identities=22% Similarity=0.365 Sum_probs=34.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGI 65 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l 65 (272)
+++.+|.|.|++||||||+|+.|+++| ++.|+|++.+.+.+
T Consensus 32 m~~~~i~idG~~gsGKst~~~~la~~l-----~~~~~~~g~~yRa~ 72 (863)
T PRK12269 32 MGTVIIALDGPAGSGKSSVCRLLASRL-----GAQCLNTGSFYRAF 72 (863)
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHHh-----CCcEEeHHHHHHHH
Confidence 344589999999999999999999999 56789988776543
No 117
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.02 E-value=5.9e-10 Score=93.62 Aligned_cols=153 Identities=14% Similarity=0.138 Sum_probs=82.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc-c------------cC-----------------CC
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN-A------------NL-----------------AF 71 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~-~------------~~-----------------~~ 71 (272)
.++|.++|.+||||||+|+.+++ + ++..+|.|.+.+.+. + +. -|
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~-----G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf 75 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-L-----GFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVF 75 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-c-----CCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHc
Confidence 46899999999999999999999 6 566688887644211 0 00 02
Q ss_pred CHHHHHHHHHHHHH--------HHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh
Q psy17388 72 SEEDRNENVRRAAE--------CAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH 143 (272)
Q Consensus 72 ~~~~~~~~~~~i~~--------~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~ 143 (272)
.+.....++..+.. ......+++ .++.+.. .+.+...... -..+|+++||+++..+|+.+|.
T Consensus 76 ~~~~~~~~Le~i~hPli~~~~~~~~~~~~~~-~~~~eip--------lL~e~~~~~~-~d~Vi~V~a~~e~r~eRl~~R~ 145 (201)
T COG0237 76 NDPEARLKLEKILHPLIRAEIKVVIDGARSP-YVVLEIP--------LLFEAGGEKY-FDKVIVVYAPPEIRLERLMKRD 145 (201)
T ss_pred CCHHHHHHHHHhhhHHHHHHHHHHHHHhhCC-ceEEEch--------HHHhcccccc-CCEEEEEECCHHHHHHHHHhcC
Confidence 22222222222211 111222233 4443321 1111100000 1278999999999999997663
Q ss_pred hhhhhhccccc-cccccccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388 144 YKKAREGKIKS-FTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAK 193 (272)
Q Consensus 144 ~~~~r~~~~~~-~~~~~~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~ 193 (272)
...+. .... ...-.+..+....++++++++ .+++...+++.+.+...
T Consensus 146 -~~~~e-~~~~~~~~Q~~~~ek~~~ad~vi~n~-~~i~~l~~~i~~~~~~~ 193 (201)
T COG0237 146 -GLDEE-DAEARLASQRDLEEKLALADVVIDND-GSIENLLEQIEKLLKEL 193 (201)
T ss_pred -CCCHH-HHHHHHHhcCCHHHHHhhcCChhhcC-CCHHHHHHHHHHHHHHH
Confidence 11000 0000 000111122345678999875 57888888887777654
No 118
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.02 E-value=4.1e-10 Score=94.84 Aligned_cols=159 Identities=11% Similarity=0.085 Sum_probs=80.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc---ccCCC---CHHHHHH---------------
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN---ANLAF---SEEDRNE--------------- 78 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~---~~~~~---~~~~~~~--------------- 78 (272)
.++.+|+|+|++||||||+++.|+..++ .+...-...-++... .+..+ +......
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~----~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP----NLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFG 78 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc----cceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECC
Confidence 4678999999999999999999999873 111111111111000 00000 0000000
Q ss_pred -HHHHHHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhh--hhhcccccc
Q psy17388 79 -NVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKK--AREGKIKSF 155 (272)
Q Consensus 79 -~~~~i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~--~r~~~~~~~ 155 (272)
.+......+...+..|..||++... .....++ ...+-.+.++++.++.+++.+|+..|.... .....+..
T Consensus 79 ~~y~~~~~~i~~~l~~g~~vi~dl~~---~g~~~l~---~~~~~~~~I~i~~~s~~~l~~Rl~~R~~~~~~~i~~rl~~- 151 (205)
T PRK00300 79 NYYGTPRSPVEEALAAGKDVLLEIDW---QGARQVK---KKMPDAVSIFILPPSLEELERRLRGRGTDSEEVIARRLAK- 151 (205)
T ss_pred ccccCcHHHHHHHHHcCCeEEEeCCH---HHHHHHH---HhCCCcEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHH-
Confidence 0000122345566788888877422 2222222 222223334444677999999987653110 00000100
Q ss_pred ccccccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388 156 TGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAK 193 (272)
Q Consensus 156 ~~~~~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~ 193 (272)
.....+....++++|.++ +++++.+++.+.+...
T Consensus 152 --~~~~~~~~~~~d~vi~n~--~~e~~~~~l~~il~~~ 185 (205)
T PRK00300 152 --AREEIAHASEYDYVIVND--DLDTALEELKAIIRAE 185 (205)
T ss_pred --HHHHHHhHHhCCEEEECC--CHHHHHHHHHHHHHHH
Confidence 111111123456777643 7999999999999876
No 119
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.01 E-value=5.7e-09 Score=103.57 Aligned_cols=37 Identities=30% Similarity=0.425 Sum_probs=31.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccc
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNG 64 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~ 64 (272)
.+|.|.|+|||||||+|+.|+++| ++.++|+..+...
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l-----~~~~~~~g~~~r~ 38 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYL-----GYAYLDTGAMYRA 38 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-----CCcEeecCcEeHH
Confidence 379999999999999999999999 5667887766543
No 120
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=99.01 E-value=2.9e-09 Score=90.26 Aligned_cols=111 Identities=14% Similarity=0.112 Sum_probs=62.6
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc-ccccccccCCCCHHHHHHHH--------HHHHHHHH-HHHh--
Q psy17388 25 LLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN-LRNGINANLAFSEEDRNENV--------RRAAECAK-MFAE-- 92 (272)
Q Consensus 25 I~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~-i~~~l~~~~~~~~~~~~~~~--------~~i~~~~~-~~~~-- 92 (272)
|+|.|+|||||||+|+.|++++ ++.+++.++ ++..+.....+..... ..+ ..+..+.. .+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~-----g~~~is~gdllr~~~~~~~~~~~~~~-~~~~~g~~vp~~~~~~l~~~~i~~~~ 75 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY-----GLPHISTGDLLRAEIKAGTPLGKKAK-EYMEKGELVPDEIVNQLVKERLTQNQ 75 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc-----CCCeeehhHHHHHhhccccHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHhcCc
Confidence 7899999999999999999998 567777644 4433321111110000 000 00112222 2222
Q ss_pred -CCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh
Q psy17388 93 -CGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH 143 (272)
Q Consensus 93 -~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~ 143 (272)
.+..+|.|+........+.+...... .+..+|+|++|.+++.+|+.+|.
T Consensus 76 ~~~~~~ilDGfPrt~~Qa~~l~~~~~~--~~~~vi~L~~~~~~~~~Rl~~R~ 125 (210)
T TIGR01351 76 DNENGFILDGFPRTLSQAEALDALLKE--KIDAVIELDVPDEELVERLSGRR 125 (210)
T ss_pred ccCCcEEEeCCCCCHHHHHHHHHHhcc--CCCEEEEEECCHHHHHHHHHCCC
Confidence 13456666532223333444333321 35688999999999999997663
No 121
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.99 E-value=6.5e-10 Score=94.03 Aligned_cols=159 Identities=11% Similarity=0.134 Sum_probs=79.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc---ccc--ccCCCCH-HHHHHHH------------
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN---GIN--ANLAFSE-EDRNENV------------ 80 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~---~l~--~~~~~~~-~~~~~~~------------ 80 (272)
+.+|++|+|+|+|||||||+++.|.+.. ..+.+.-...-+. +-. .++.|.. +.....+
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~----~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~ 85 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRERK----LPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVY 85 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhcC----CcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEc
Confidence 3578999999999999999999998652 1221111111110 000 0111111 1100000
Q ss_pred ----HHHHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEe-CCHHHHHHhhhhhhhhhhhhcccccc
Q psy17388 81 ----RRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVN-TPVEICEQRDVKGHYKKAREGKIKSF 155 (272)
Q Consensus 81 ----~~i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~-~~~e~~~~Rl~~r~~~~~r~~~~~~~ 155 (272)
..-...+...++.|.+||++... .....+++. ....+.||+. .+.+++.+|+.+|... ....+
T Consensus 86 g~~YGt~~~~i~~~~~~g~~vi~~~~~---~g~~~l~~~----~pd~~~if~~pps~e~l~~Rl~~R~~~-----~~~~~ 153 (206)
T PRK14738 86 GNYYGVPKAPVRQALASGRDVIVKVDV---QGAASIKRL----VPEAVFIFLAPPSMDELTRRLELRRTE-----SPEEL 153 (206)
T ss_pred CceecCCHHHHHHHHHcCCcEEEEcCH---HHHHHHHHh----CCCeEEEEEeCCCHHHHHHHHHHcCCC-----CHHHH
Confidence 00012345566788888876422 233333332 2233344443 4677899998655210 00011
Q ss_pred -ccccccCC---CCCCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388 156 -TGVSQPYE---APKNPDLILETVNVPVEKCANSVLDMIAAK 193 (272)
Q Consensus 156 -~~~~~~ye---~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~ 193 (272)
.++...|. .....++++.+++.+++++.++|.+.|.+.
T Consensus 154 ~~Rl~~~~~e~~~~~~~~~~iId~~~~~e~v~~~i~~~l~~~ 195 (206)
T PRK14738 154 ERRLATAPLELEQLPEFDYVVVNPEDRLDEAVAQIMAIISAE 195 (206)
T ss_pred HHHHHHHHHHHhcccCCCEEEECCCCCHHHHHHHHHHHHHHH
Confidence 11222221 111235555445578999999999999875
No 122
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.98 E-value=8.7e-10 Score=90.16 Aligned_cols=161 Identities=13% Similarity=0.159 Sum_probs=83.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH----------------cCCCEEEecCccccccccccCC--CCHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIA----------------QGIPAYALDGDNLRNGINANLA--FSEEDRNENVRR 82 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~----------------~g~~~~~ld~D~i~~~l~~~~~--~~~~~~~~~~~~ 82 (272)
+|.+|+|+||||+||||+.++|.+...- .|.+.++++.+.+.+.+..+.- +..- ...++..
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~-~gnyYGT 81 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEY-HGNYYGT 81 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEE-cCCcccC
Confidence 6899999999999999999999988610 0222222332222222211100 0000 0000111
Q ss_pred HHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCC-HHHHHHhhhhhhhhhhhhcccc-ccccccc
Q psy17388 83 AAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTP-VEICEQRDVKGHYKKAREGKIK-SFTGVSQ 160 (272)
Q Consensus 83 i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~-~e~~~~Rl~~r~~~~~r~~~~~-~~~~~~~ 160 (272)
-..-+...+..|..||.+--- ..-..+++.. + +++.||+.+| .+.+.+|+.+|...... .+. .+.....
T Consensus 82 ~~~~ve~~~~~G~~vildId~---qGa~qvk~~~---p-~~v~IFi~pPs~eeL~~RL~~Rgtds~e--~I~~Rl~~a~~ 152 (191)
T COG0194 82 SREPVEQALAEGKDVILDIDV---QGALQVKKKM---P-NAVSIFILPPSLEELERRLKGRGTDSEE--VIARRLENAKK 152 (191)
T ss_pred cHHHHHHHHhcCCeEEEEEeh---HHHHHHHHhC---C-CeEEEEEcCCCHHHHHHHHHccCCCCHH--HHHHHHHHHHH
Confidence 122345566788888866311 1122333332 2 6688999885 88888898665311100 000 0111111
Q ss_pred cCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388 161 PYEAPKNPDLILETVNVPVEKCANSVLDMIAAK 193 (272)
Q Consensus 161 ~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~ 193 (272)
........+.+|.++ +++.++..+...+...
T Consensus 153 Ei~~~~~fdyvivNd--d~e~a~~~l~~ii~ae 183 (191)
T COG0194 153 EISHADEFDYVIVND--DLEKALEELKSIILAE 183 (191)
T ss_pred HHHHHHhCCEEEECc--cHHHHHHHHHHHHHHH
Confidence 122223456777765 7888888888877654
No 123
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=98.98 E-value=1.6e-09 Score=91.27 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=28.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR 62 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~ 62 (272)
.+|.|+|.+||||||+++.|++ + ++.++|.|.+.
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~-----g~~vid~D~i~ 35 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-E-----GFLIVDADQVA 35 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-C-----CCeEEeCcHHH
Confidence 4799999999999999999997 4 46678988653
No 124
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.97 E-value=1.4e-09 Score=83.59 Aligned_cols=33 Identities=21% Similarity=0.440 Sum_probs=28.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
+|+|+|+|||||||+|+.|++.+ ++.+++.|.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~-----~~~~i~~d~~ 33 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL-----GFPVISMDDL 33 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH-----TCEEEEEHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH-----CCeEEEecce
Confidence 58999999999999999999999 4556666663
No 125
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.97 E-value=5e-09 Score=86.71 Aligned_cols=40 Identities=25% Similarity=0.349 Sum_probs=36.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
+|.|+|.|||||||+|+.|++.+...|.++..++.|.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~ 40 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV 40 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence 5899999999999999999999987778888999988875
No 126
>PRK07261 topology modulation protein; Provisional
Probab=98.96 E-value=5.6e-09 Score=85.74 Aligned_cols=99 Identities=18% Similarity=0.147 Sum_probs=59.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEcCCC
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIALCSFVS 103 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI~d~~~ 103 (272)
.|+|+|+|||||||+|+.|++.+ |.+ +++.|.+... .++...+..+.... +..++..+. .|+|+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~---~~~--~i~~D~~~~~----~~~~~~~~~~~~~~----~~~~~~~~~-wIidg~~ 67 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY---NCP--VLHLDTLHFQ----PNWQERDDDDMIAD----ISNFLLKHD-WIIDGNY 67 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh---CCC--eEecCCEEec----cccccCCHHHHHHH----HHHHHhCCC-EEEcCcc
Confidence 58999999999999999999988 444 4555555421 11221122222222 233345555 5666554
Q ss_pred CcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh
Q psy17388 104 PTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH 143 (272)
Q Consensus 104 ~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~ 143 (272)
.. ..... .+..+ ..+|||++|..+|..|+.+|.
T Consensus 68 ~~-~~~~~---~l~~a---d~vI~Ld~p~~~~~~R~lkR~ 100 (171)
T PRK07261 68 SW-CLYEE---RMQEA---DQIIFLNFSRFNCLYRAFKRY 100 (171)
T ss_pred hh-hhHHH---HHHHC---CEEEEEcCCHHHHHHHHHHHH
Confidence 31 11121 12222 368999999999999997773
No 127
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=98.96 E-value=2.9e-08 Score=79.28 Aligned_cols=162 Identities=16% Similarity=0.118 Sum_probs=88.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccC---CCCHHHHHH----------H-----HHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANL---AFSEEDRNE----------N-----VRR 82 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~---~~~~~~~~~----------~-----~~~ 82 (272)
++.+|++.|||||||-|+.......+.... .+.++..-.-|..-.... ..+..+... | ...
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~-r~~fvrRvITRpa~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~Yg 82 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLAGRP-RLHFVRRVITRPADAGGEDHDALSEAEFNTRAGQGAFALSWQAHGLSYG 82 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHhccCC-ceEEEEEEecccCCCCcccccccCHHHHHHHhhcCceeEEehhcCcccc
Confidence 689999999999999999999999985321 122222111111111101 111111000 0 000
Q ss_pred HHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccC
Q psy17388 83 AAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPY 162 (272)
Q Consensus 83 i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~y 162 (272)
+-..+...+..|..||++... .....++.... ...+|.++++++++.+|+..|.+.. ..++..-..-...|
T Consensus 83 ip~eId~wl~~G~vvl~NgSR---a~Lp~arrry~----~Llvv~ita~p~VLaqRL~~RGREs--~eeI~aRL~R~a~~ 153 (192)
T COG3709 83 IPAEIDLWLAAGDVVLVNGSR---AVLPQARRRYP----QLLVVCITASPEVLAQRLAERGRES--REEILARLARAARY 153 (192)
T ss_pred CchhHHHHHhCCCEEEEeccH---hhhHHHHHhhh----cceeEEEecCHHHHHHHHHHhccCC--HHHHHHHHHhhccc
Confidence 112344567789888876532 23333333332 4578999999999999997653211 11111100012233
Q ss_pred CCCCCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388 163 EAPKNPDLILETVNVPVEKCANSVLDMIAAK 193 (272)
Q Consensus 163 e~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~ 193 (272)
..-....+.||++ ..++...++++..|...
T Consensus 154 ~~~~~dv~~idNs-G~l~~ag~~ll~~l~~~ 183 (192)
T COG3709 154 TAGPGDVTTIDNS-GELEDAGERLLALLHQD 183 (192)
T ss_pred ccCCCCeEEEcCC-CcHHHHHHHHHHHHHhh
Confidence 3222334678875 58999999999888743
No 128
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=98.94 E-value=4.4e-09 Score=89.11 Aligned_cols=153 Identities=12% Similarity=0.156 Sum_probs=81.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc--------------------c-----------
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA--------------------N----------- 68 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~--------------------~----------- 68 (272)
..+.+|.|+|.+||||||+++.|.. + ++.++|.|.+.+.+.. +
T Consensus 3 ~~~~~igitG~igsGKSt~~~~l~~-~-----g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~ 76 (208)
T PRK14731 3 SLPFLVGVTGGIGSGKSTVCRFLAE-M-----GCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKR 76 (208)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-C-----CCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHH
Confidence 4568899999999999999999997 4 4566777754322210 0
Q ss_pred ---CCCCHHHHHHHHHH---------HHHHHHHHHhCC-CeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHH
Q psy17388 69 ---LAFSEEDRNENVRR---------AAECAKMFAECG-FIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEIC 135 (272)
Q Consensus 69 ---~~~~~~~~~~~~~~---------i~~~~~~~~~~g-~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~ 135 (272)
..|........+.. +..........+ .+|+.+....+.. .+... ...+|+++||.+++
T Consensus 77 l~~~vf~~~~~~~~l~~i~hp~i~~~~~~~i~~~~~~~~~vvv~e~pLL~e~---~~~~~------~d~ii~V~a~~e~~ 147 (208)
T PRK14731 77 IAQVVFSDPEKLGALNRLIHPKVFAAFQRAVDRAARRGKRILVKEAAILFES---GGDAG------LDFIVVVAADTELR 147 (208)
T ss_pred HHHHHhCCHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCEEEEEeeeeeec---Cchhc------CCeEEEEECCHHHH
Confidence 00111111111111 111222222333 3555544322111 11111 23679999999999
Q ss_pred HHhhhhhhhhhhhhccccccccccccCC---CCCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388 136 EQRDVKGHYKKAREGKIKSFTGVSQPYE---APKNPDLILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 136 ~~Rl~~r~~~~~r~~~~~~~~~~~~~ye---~~~~~~~~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
.+|+.+|... ....+. ..+..++. ....++++|+++ .++++..+++.+.++.
T Consensus 148 ~~Rl~~R~~~--s~e~~~--~Ri~~q~~~~~~~~~ad~vI~N~-g~~e~l~~~i~~~~~~ 202 (208)
T PRK14731 148 LERAVQRGMG--SREEIR--RRIAAQWPQEKLIERADYVIYNN-GTLDELKAQTEQLYQV 202 (208)
T ss_pred HHHHHHcCCC--CHHHHH--HHHHHcCChHHHHHhCCEEEECC-CCHHHHHHHHHHHHHH
Confidence 9999776211 000000 01111111 113468899875 5899999998877754
No 129
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=98.94 E-value=5.7e-09 Score=90.25 Aligned_cols=153 Identities=18% Similarity=0.171 Sum_probs=83.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc-cc-----------------------------CCCC
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN-AN-----------------------------LAFS 72 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~-~~-----------------------------~~~~ 72 (272)
.+|.|+|.+||||||+++.|.+.+ ++.++|.|.+.+.+. .+ .-|.
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~-----G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~ 76 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEH-----HIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFS 76 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc-----CCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhC
Confidence 479999999999999999999876 466688887643221 00 0022
Q ss_pred HHHHHHHHHHHH------HHHHHHH------------hCC-CeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHH
Q psy17388 73 EEDRNENVRRAA------ECAKMFA------------ECG-FIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVE 133 (272)
Q Consensus 73 ~~~~~~~~~~i~------~~~~~~~------------~~g-~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e 133 (272)
+......+..+. ++.+.+. ..+ ..||.+..-.+... ..... ...+|+++||.+
T Consensus 77 d~~~~~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~evPLL~E~~--~~~~~------~D~iv~V~a~~e 148 (244)
T PTZ00451 77 DAQARRALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDAPTLFETK--TFTYF------VSASVVVSCSEE 148 (244)
T ss_pred CHHHHHHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEechhhccC--chhhc------CCeEEEEECCHH
Confidence 222222222221 1111111 122 36666643221110 00011 237899999999
Q ss_pred HHHHhhhhhh-hhhhhhccccccccccccC---CCCCCCcEEEeCCC-CCHHHHHHHHHHHHHhC
Q psy17388 134 ICEQRDVKGH-YKKAREGKIKSFTGVSQPY---EAPKNPDLILETVN-VPVEKCANSVLDMIAAK 193 (272)
Q Consensus 134 ~~~~Rl~~r~-~~~~r~~~~~~~~~~~~~y---e~~~~~~~~Idt~~-~~~ee~~~~I~~~L~~~ 193 (272)
++.+|+.+|. .... +.. ..+..+. +.-..+|++|++++ .++++..++|.+.+...
T Consensus 149 ~ri~RL~~R~g~s~e---ea~--~Ri~~Q~~~~ek~~~aD~VI~N~~~g~~~~L~~~v~~~~~~~ 208 (244)
T PTZ00451 149 RQIERLRKRNGFSKE---EAL--QRIGSQMPLEEKRRLADYIIENDSADDLDELRGSVCDCVAWM 208 (244)
T ss_pred HHHHHHHHcCCCCHH---HHH--HHHHhCCCHHHHHHhCCEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 9999997652 1100 000 0111111 11235789998752 58999999998877653
No 130
>PLN02422 dephospho-CoA kinase
Probab=98.93 E-value=4.6e-09 Score=90.07 Aligned_cols=149 Identities=11% Similarity=0.109 Sum_probs=81.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc--------------------c----------CCCC
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA--------------------N----------LAFS 72 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~--------------------~----------~~~~ 72 (272)
.+|.++|.+||||||+++.|++ + ++.++|.|.+.+.+.. + .-|.
T Consensus 2 ~~igltG~igsGKstv~~~l~~-~-----g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~ 75 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFKS-S-----GIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFS 75 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-C-----CCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhC
Confidence 3799999999999999999994 4 5667888876432210 0 0122
Q ss_pred HHHHHHHHHHHH------HHHHHHH---hCC-CeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388 73 EEDRNENVRRAA------ECAKMFA---ECG-FIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG 142 (272)
Q Consensus 73 ~~~~~~~~~~i~------~~~~~~~---~~g-~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r 142 (272)
+......+..+. ++.+... ..+ ..|+.+..-.+.. .+... -..+|+++||.+++.+|+.+|
T Consensus 76 d~~~~~~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~eipLL~E~---~~~~~------~D~vI~V~a~~e~ri~RL~~R 146 (232)
T PLN02422 76 DPSKRQLLNRLLAPYISSGIFWEILKLWLKGCKVIVLDIPLLFET---KMDKW------TKPVVVVWVDPETQLERLMAR 146 (232)
T ss_pred CHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEehhhhhc---chhhh------CCEEEEEECCHHHHHHHHHHc
Confidence 222222222221 1111111 122 3565554322111 11111 237799999999999999765
Q ss_pred h-hhhhhhccccccccccccC---CCCCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388 143 H-YKKAREGKIKSFTGVSQPY---EAPKNPDLILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 143 ~-~~~~r~~~~~~~~~~~~~y---e~~~~~~~~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
. .... +.. ..+..++ +.-..++++|+|+ .+.++...++.+.++.
T Consensus 147 ~g~s~e---ea~--~Ri~~Q~~~eek~~~AD~VI~N~-gs~e~L~~qv~~ll~~ 194 (232)
T PLN02422 147 DGLSEE---QAR--NRINAQMPLDWKRSKADIVIDNS-GSLEDLKQQFQKVLEK 194 (232)
T ss_pred CCCCHH---HHH--HHHHHcCChhHHHhhCCEEEECC-CCHHHHHHHHHHHHHH
Confidence 2 1110 000 0112221 1124578999986 4899888888877754
No 131
>PTZ00301 uridine kinase; Provisional
Probab=98.93 E-value=3.3e-08 Score=83.76 Aligned_cols=43 Identities=30% Similarity=0.298 Sum_probs=31.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCC-EEEecCccccc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQ-GIP-AYALDGDNLRN 63 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~-g~~-~~~ld~D~i~~ 63 (272)
+-.+|.|.|+|||||||+|+.|.+.+... |.. +..+..|.+..
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~ 46 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYR 46 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCcc
Confidence 34789999999999999999999887432 222 44566666644
No 132
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.91 E-value=1.7e-08 Score=85.07 Aligned_cols=113 Identities=15% Similarity=0.215 Sum_probs=66.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc-------ccCCCCHHH---HHHHHHHHHHHH--
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN-------ANLAFSEED---RNENVRRAAECA-- 87 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~-------~~~~~~~~~---~~~~~~~i~~~~-- 87 (272)
.++.+|.|.|+|||||||+|+.|.+.|+. ..+..+..|++..... ....|+... ....++.+..+.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~--~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g 83 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGV--EKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQG 83 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCc--CcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcC
Confidence 34589999999999999999999999942 2455666666654221 112222211 111112221100
Q ss_pred -----------HH-------HHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388 88 -----------KM-------FAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG 142 (272)
Q Consensus 88 -----------~~-------~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r 142 (272)
.. ......+||+.++..+.. +.++++++ +.||+++|.+++..|.-+|
T Consensus 84 ~~v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d--~~lr~~~d------~kIfvdtd~D~RliRri~R 148 (218)
T COG0572 84 KPVDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYD--ERLRDLMD------LKIFVDTDADVRLIRRIKR 148 (218)
T ss_pred CcccccccchhcccccCCccccCCCcEEEEeccccccc--HHHHhhcC------EEEEEeCCccHHHHHHHHH
Confidence 00 001123666776665432 45666654 7899999999998887665
No 133
>PLN02674 adenylate kinase
Probab=98.91 E-value=2e-08 Score=86.72 Aligned_cols=117 Identities=15% Similarity=0.081 Sum_probs=67.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc-cccccccCCCCHHHHHHHHH--------HHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL-RNGINANLAFSEEDRNENVR--------RAAECAKMF 90 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i-~~~l~~~~~~~~~~~~~~~~--------~i~~~~~~~ 90 (272)
.+++.|+|.|+|||||||+|+.|++.+ ++.+++.+++ +..+..+..+.... ...+. .+..+....
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~-----~~~his~GdllR~~i~~~s~~g~~i-~~~~~~G~lvpd~iv~~lv~~~ 102 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEY-----CLCHLATGDMLRAAVAAKTPLGIKA-KEAMDKGELVSDDLVVGIIDEA 102 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHc-----CCcEEchhHHHHHHHhccChhhHHH-HHHHHcCCccCHHHHHHHHHHH
Confidence 445779999999999999999999998 6778886554 43332211111100 00000 011222222
Q ss_pred H-h--CCCeEEEcCCCCcHHHHHHHHHHHHhCC-CceEEEEEeCCHHHHHHhhhhh
Q psy17388 91 A-E--CGFIALCSFVSPTAAARDRAREIHRNAN-LEFFEVFVNTPVEICEQRDVKG 142 (272)
Q Consensus 91 ~-~--~g~~VI~d~~~~~~~~r~~~~~~~~~~g-~~~~~V~L~~~~e~~~~Rl~~r 142 (272)
+ + .+..+|.|+.-........+..++...| ....+|+|++|.+++.+|+..|
T Consensus 103 l~~~~~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR 158 (244)
T PLN02674 103 MKKPSCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGR 158 (244)
T ss_pred HhCcCcCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcc
Confidence 2 1 2234566643223333444444444333 2446899999999999999766
No 134
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=98.91 E-value=2.7e-08 Score=84.70 Aligned_cols=121 Identities=14% Similarity=0.220 Sum_probs=76.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccccc---C-CCCHH--HHHHHHHH-----HHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINAN---L-AFSEE--DRNENVRR-----AAECAK 88 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~---~-~~~~~--~~~~~~~~-----i~~~~~ 88 (272)
..+.+|++.|+||.|||++|+.|.+.|.=.|+++-.++..+.|+..... . .|++. ......++ +.++..
T Consensus 10 ~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a~~~l~dl~~ 89 (222)
T PF01591_consen 10 AGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIAKEALEDLIE 89 (222)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999999999998888888888877776644322 1 12221 11112222 233445
Q ss_pred HHH-hCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhh
Q psy17388 89 MFA-ECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDV 140 (272)
Q Consensus 89 ~~~-~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~ 140 (272)
.+. +.|.+-|.|+++.....|..+.+.+...+..++.|-.-|+.+.+.++.-
T Consensus 90 ~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~ii~~NI 142 (222)
T PF01591_consen 90 WLQEEGGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEIIERNI 142 (222)
T ss_dssp HHHTS--SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHH
T ss_pred HHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHHHHHHH
Confidence 555 4678999999999999999999999998877766666677777666653
No 135
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.89 E-value=1.6e-08 Score=84.77 Aligned_cols=38 Identities=24% Similarity=0.279 Sum_probs=31.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
+|.|+|++||||||+++.|...+ .+..+.+++.|.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~~ 38 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYYK 38 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEeccccc
Confidence 58899999999999999999988 244677788887654
No 136
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.89 E-value=2.1e-09 Score=83.07 Aligned_cols=22 Identities=32% Similarity=0.604 Sum_probs=21.1
Q ss_pred EEEEcCCCCCHHHHHHHHHHHH
Q psy17388 25 LLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 25 I~l~G~~GsGKSTlAr~La~~L 46 (272)
|+|+|.|||||||+|+.|++++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999996
No 137
>PTZ00088 adenylate kinase 1; Provisional
Probab=98.87 E-value=1.6e-08 Score=86.84 Aligned_cols=113 Identities=12% Similarity=0.044 Sum_probs=63.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc-cccccCCCCHH-----------HHHHHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN-GINANLAFSEE-----------DRNENVRRAAECAK 88 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~-~l~~~~~~~~~-----------~~~~~~~~i~~~~~ 88 (272)
.|+.|+|.|+|||||||+|+.|++.+ ++.+++.+.+.. ........... ........+.+...
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~-----g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~ 79 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKE-----NLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIA 79 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh-----CCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHH
Confidence 34569999999999999999999999 577788776543 22211000000 00111111122122
Q ss_pred HH-HhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388 89 MF-AECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG 142 (272)
Q Consensus 89 ~~-~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r 142 (272)
.+ ...+..+|.|+.-........+.. .+-+..+|+|++|.+++.+|+..|
T Consensus 80 ~~~~~~~~g~iLDGfPRt~~Qa~~l~~----~~~~~~vi~l~~~~~~~~~Rl~~R 130 (229)
T PTZ00088 80 KVTDDCFKGFILDGFPRNLKQCKELGK----ITNIDLFVNIYLPRNILIKKLLGR 130 (229)
T ss_pred hhccccCceEEEecCCCCHHHHHHHHh----cCCCCEEEEEeCCHHHHHHHHHcC
Confidence 21 122345666653222222333222 233567899999999999999765
No 138
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.87 E-value=1.5e-09 Score=90.87 Aligned_cols=39 Identities=31% Similarity=0.487 Sum_probs=31.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCC----EEEecCcccc
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIP----AYALDGDNLR 62 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~----~~~ld~D~i~ 62 (272)
+|.|+|+|||||||+|++|+..|...|.+ ..++..|.+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~ 43 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFY 43 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGB
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccc
Confidence 68999999999999999999999776666 4555555543
No 139
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.87 E-value=5.2e-08 Score=82.37 Aligned_cols=40 Identities=28% Similarity=0.324 Sum_probs=32.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
.++.+|.|+|++||||||+++.|...+.. .++.++..|.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D~~ 43 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK--LEIVIISQDNY 43 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc--cCCeEeccccc
Confidence 56789999999999999999999998842 23556666654
No 140
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.87 E-value=7.8e-09 Score=85.98 Aligned_cols=36 Identities=17% Similarity=0.324 Sum_probs=29.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
+|.|+|.|||||||+|+.|++.+. ++.+++.|.+..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~----~~~~i~~Ddf~~ 36 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP----NCCVIHQDDFFK 36 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC----CCeEEccccccC
Confidence 588999999999999999999983 456677776644
No 141
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=98.84 E-value=3e-08 Score=84.89 Aligned_cols=144 Identities=18% Similarity=0.244 Sum_probs=87.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHH--HhCCCeEEEc
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMF--AECGFIALCS 100 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~--~~~g~~VI~d 100 (272)
.+|+++|.||||||+..+.|... +.+.+| ++-..+ +-.+.+++... ......|++|
T Consensus 2 ~lvIVTGlSGAGKsvAl~~lEDl------GyycvD--NLPp~L--------------lp~~~~~~~~~~~~~~kvAv~iD 59 (286)
T COG1660 2 RLVIVTGLSGAGKSVALRVLEDL------GYYCVD--NLPPQL--------------LPKLADLMLTLESRITKVAVVID 59 (286)
T ss_pred cEEEEecCCCCcHHHHHHHHHhc------Ceeeec--CCCHHH--------------HHHHHHHHhhcccCCceEEEEEe
Confidence 47999999999999999999875 455555 333211 11122222111 1122345555
Q ss_pred CCC-CcHHHHHHHHHHHHhC-CCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccc-----ccccccc--CCCC--CCCc
Q psy17388 101 FVS-PTAAARDRAREIHRNA-NLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKS-----FTGVSQP--YEAP--KNPD 169 (272)
Q Consensus 101 ~~~-~~~~~r~~~~~~~~~~-g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~-----~~~~~~~--ye~~--~~~~ 169 (272)
.-+ .+......+..-+++. ++.+.++||+++.+++.+|-. ..|..+.-. ..++... +-.| +.++
T Consensus 60 iRs~~~~~~l~~~l~~l~~~~~~~~~iLFLeA~~~~Lv~RY~-----etRR~HPL~~~~~l~~~I~~ERelL~pLk~~A~ 134 (286)
T COG1660 60 VRSREFFGDLEEVLDELKDNGDIDPRVLFLEADDETLVRRYS-----ETRRSHPLSEDGLLLEAIAKERELLAPLREIAD 134 (286)
T ss_pred cccchhHHHHHHHHHHHHhcCCCCceEEEEECchhHHHHHHh-----hhhhcCCCCccCcHHHHHHHHHHHHHHHHHHhh
Confidence 322 2223334444445555 356888999999999999964 233222111 1222222 1123 4678
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388 170 LILETVNVPVEKCANSVLDMIAAK 193 (272)
Q Consensus 170 ~~Idt~~~~~ee~~~~I~~~L~~~ 193 (272)
++|||+++++.+..+.|...+...
T Consensus 135 ~vIDTs~ls~~~Lr~~i~~~f~~~ 158 (286)
T COG1660 135 LVIDTSELSVHELRERIRTRFLGK 158 (286)
T ss_pred hEeecccCCHHHHHHHHHHHHccC
Confidence 999999999999999999999853
No 142
>PRK14526 adenylate kinase; Provisional
Probab=98.84 E-value=6.6e-08 Score=82.05 Aligned_cols=110 Identities=15% Similarity=0.103 Sum_probs=58.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc-cccccccCCCCHHHHHHHHH-------H-HHHHHHH-HHh-
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL-RNGINANLAFSEEDRNENVR-------R-AAECAKM-FAE- 92 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i-~~~l~~~~~~~~~~~~~~~~-------~-i~~~~~~-~~~- 92 (272)
.|+|.|+|||||||+|+.|++.+ ++.+++.+.+ ++.+.......... ...+. . +..+... +..
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~-----~~~~is~G~llr~~~~~~t~~g~~i-~~~~~~g~lvpd~~~~~lv~~~l~~~ 75 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNEL-----NYYHISTGDLFRENILNSTPLGKEI-KQIVENGQLVPDSITIKIVEDKINTI 75 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCceeecChHHHHhcccCChhhHHH-HHHHHcCccCChHHHHHHHHHHHhcc
Confidence 47899999999999999999998 5666765544 44332211111000 00000 0 0111111 111
Q ss_pred -CCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh
Q psy17388 93 -CGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH 143 (272)
Q Consensus 93 -~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~ 143 (272)
....+|.|+.--.....+.+..... .+.+|++++|.+++.+|+..|.
T Consensus 76 ~~~~g~ilDGfPR~~~Qa~~l~~~~~----~~~vi~l~~~~~~~~~Rl~~R~ 123 (211)
T PRK14526 76 KNNDNFILDGFPRNINQAKALDKFLP----NIKIINFLIDEELLIKRLSGRR 123 (211)
T ss_pred cccCcEEEECCCCCHHHHHHHHHhcC----CCEEEEEECCHHHHHHHHHCCC
Confidence 1233455633222222233322221 2356889999999999997763
No 143
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=98.82 E-value=2.4e-08 Score=83.76 Aligned_cols=146 Identities=17% Similarity=0.222 Sum_probs=77.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc-cc----------C-------------------CCCH
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN-AN----------L-------------------AFSE 73 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~-~~----------~-------------------~~~~ 73 (272)
+|.|+|.+||||||+++.|++ + ++.++|.|.+.+.+. .+ . -|..
T Consensus 1 ~i~itG~~gsGKst~~~~l~~-~-----g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~ 74 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE-L-----GAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFND 74 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH-C-----CCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCC
Confidence 478999999999999999975 3 466788887643221 00 0 0221
Q ss_pred HHHHHHHHHH---------HHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh-
Q psy17388 74 EDRNENVRRA---------AECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH- 143 (272)
Q Consensus 74 ~~~~~~~~~i---------~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~- 143 (272)
......+..+ ....... ..+..||.+....+.. .+...+ ..+||++||.+++.+|+.+|.
T Consensus 75 ~~~~~~L~~i~hP~v~~~~~~~~~~~-~~~~~vi~e~pLL~E~---~~~~~~------D~vi~V~a~~e~r~~RL~~R~g 144 (196)
T PRK14732 75 EEKLKALNELIHPLVRKDFQKILQTT-AEGKLVIWEVPLLFET---DAYTLC------DATVTVDSDPEESILRTISRDG 144 (196)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH-hcCCcEEEEeeeeeEc---CchhhC------CEEEEEECCHHHHHHHHHHcCC
Confidence 1111222222 1111111 2334555543222111 111122 378999999999999997662
Q ss_pred hhhhhhccccccccccccC---CCCCCCcEEEeCCCCCHHHHHHHHHHHHH
Q psy17388 144 YKKAREGKIKSFTGVSQPY---EAPKNPDLILETVNVPVEKCANSVLDMIA 191 (272)
Q Consensus 144 ~~~~r~~~~~~~~~~~~~y---e~~~~~~~~Idt~~~~~ee~~~~I~~~L~ 191 (272)
.... .. ...+..+. +.-..++++|++++ ++++...++.+.++
T Consensus 145 ~s~e---~a--~~ri~~Q~~~~~k~~~aD~vI~N~~-~~~~l~~~v~~l~~ 189 (196)
T PRK14732 145 MKKE---DV--LARIASQLPITEKLKRADYIVRNDG-NREGLKEECKILYS 189 (196)
T ss_pred CCHH---HH--HHHHHHcCCHHHHHHhCCEEEECCC-CHHHHHHHHHHHHH
Confidence 1110 00 00111111 11135789999864 88888887776654
No 144
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.82 E-value=3.2e-08 Score=81.99 Aligned_cols=158 Identities=14% Similarity=0.207 Sum_probs=83.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc---cccccCCCCHHHHHHHHHHH--------------
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN---GINANLAFSEEDRNENVRRA-------------- 83 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~---~l~~~~~~~~~~~~~~~~~i-------------- 83 (272)
++++|+|+|++||||||+++.|.+.++. .+...-...-|. +-..+..|....+.+.-+.+
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~~---~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~ 77 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLAKRLIQEFPD---KFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGN 77 (183)
T ss_dssp SSSEEEEESSTTSSHHHHHHHHHHHSTT---TEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhccc---ccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecch
Confidence 4678999999999999999999998742 121111111111 11111111111111111110
Q ss_pred -----HHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCC-HHHHHHhhhhhhhhhhhhcccc-ccc
Q psy17388 84 -----AECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTP-VEICEQRDVKGHYKKAREGKIK-SFT 156 (272)
Q Consensus 84 -----~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~-~e~~~~Rl~~r~~~~~r~~~~~-~~~ 156 (272)
...+....+.|.++|++.. + .....+ +..+...+.||+.++ .+.+.+|+.+|...... .+. ...
T Consensus 78 ~YGt~~~~i~~~~~~gk~~il~~~-~--~g~~~L----~~~~~~~~~IfI~~~s~~~l~~~l~~r~~~~~~--~i~~r~~ 148 (183)
T PF00625_consen 78 YYGTSKSAIDKVLEEGKHCILDVD-P--EGVKQL----KKAGFNPIVIFIKPPSPEVLKRRLRRRGDESEE--EIEERLE 148 (183)
T ss_dssp EEEEEHHHHHHHHHTTTEEEEEET-H--HHHHHH----HHCTTTEEEEEEEESSHHHHHHHHHTTTHCHHH--HHHHHHH
T ss_pred hhhhccchhhHhhhcCCcEEEEcc-H--HHHHHH----HhcccCceEEEEEccchHHHHHHHhccccccHH--HHHHHHH
Confidence 1334556678888887632 2 222222 233567788999765 78888887554321110 110 111
Q ss_pred cccccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388 157 GVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 157 ~~~~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
.....+......+.+|.++ ++++++.+|.+.|++
T Consensus 149 ~~~~~~~~~~~fd~vi~n~--~le~~~~~l~~ii~~ 182 (183)
T PF00625_consen 149 RAEKEFEHYNEFDYVIVND--DLEEAVKELKEIIEQ 182 (183)
T ss_dssp HHHHHHGGGGGSSEEEECS--SHHHHHHHHHHHHHH
T ss_pred HHHHHHhHhhcCCEEEECc--CHHHHHHHHHHHHHh
Confidence 1222233222256788754 799999999999875
No 145
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=98.79 E-value=9.1e-09 Score=85.07 Aligned_cols=34 Identities=21% Similarity=0.387 Sum_probs=28.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
+|.|+|.+||||||+++.|++ + ++.++|.|.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~-----g~~~i~~D~~~~ 34 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-L-----GIPVIDADKIAH 34 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-C-----CCCEEecCHHHH
Confidence 489999999999999999998 5 455677777644
No 146
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=98.79 E-value=2.4e-08 Score=92.50 Aligned_cols=149 Identities=17% Similarity=0.227 Sum_probs=79.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc-c----------C-------------------CCC
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA-N----------L-------------------AFS 72 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~-~----------~-------------------~~~ 72 (272)
..|.|+|.+||||||+++.|++ + ++.++|.|.+.+.+.. + . .|.
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~-----G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~ 75 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-L-----GAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFA 75 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-C-----CCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhC
Confidence 3699999999999999999997 5 5667888876443210 0 0 122
Q ss_pred HHHHHHHHHHHH------HHHHHHHh--CCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh-h
Q psy17388 73 EEDRNENVRRAA------ECAKMFAE--CGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG-H 143 (272)
Q Consensus 73 ~~~~~~~~~~i~------~~~~~~~~--~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r-~ 143 (272)
.......+..+. .+.+.+.. .+.+|+.+....+.. .+...+ ..+|||+||.+++.+|+..| .
T Consensus 76 ~~~~~~~le~i~hP~I~~~i~~~i~~~~~~~vvv~eipLL~E~---~~~~~~------D~iI~V~ap~e~ri~Rl~~rRg 146 (395)
T PRK03333 76 DDEARAVLNGIVHPLVGARRAELIAAAPEDAVVVEDIPLLVES---GMAPLF------HLVVVVDADVEVRVRRLVEQRG 146 (395)
T ss_pred CHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecC---CchhhC------CEEEEEECCHHHHHHHHHhcCC
Confidence 222222222211 11111112 233444432221111 111122 36799999999999999653 1
Q ss_pred hhhhhhcccccccccccc--CCC-CCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388 144 YKKAREGKIKSFTGVSQP--YEA-PKNPDLILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 144 ~~~~r~~~~~~~~~~~~~--ye~-~~~~~~~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
...... ...+..+ ++. -..++++|+++ .++++...++.+.++.
T Consensus 147 ~s~~~a-----~~ri~~Q~~~e~k~~~AD~vIdN~-~s~e~l~~~v~~~l~~ 192 (395)
T PRK03333 147 MAEADA-----RARIAAQASDEQRRAVADVWLDNS-GTPDELVEAVRALWAD 192 (395)
T ss_pred CCHHHH-----HHHHHhcCChHHHHHhCCEEEECC-CCHHHHHHHHHHHHHH
Confidence 111100 0011111 111 13568999964 5888888888877654
No 147
>KOG3079|consensus
Probab=98.78 E-value=1.2e-07 Score=77.37 Aligned_cols=163 Identities=16% Similarity=0.115 Sum_probs=88.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc-ccccccc-cCCCCHHHHHHHHH--------HHHHHH-H
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN-LRNGINA-NLAFSEEDRNENVR--------RAAECA-K 88 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~-i~~~l~~-~~~~~~~~~~~~~~--------~i~~~~-~ 88 (272)
.++.+||+.|.|||||-|.+..+.+++ ++.+++..+ +|..... +-.+...- .+.+. -...+. .
T Consensus 6 ~~~~IifVlGGPGsgKgTqC~kiv~ky-----~ftHlSaGdLLR~E~~~~gse~g~~I-~~~i~~G~iVP~ei~~~LL~~ 79 (195)
T KOG3079|consen 6 DKPPIIFVLGGPGSGKGTQCEKIVEKY-----GFTHLSAGDLLRAEIASAGSERGALI-KEIIKNGDLVPVEITLSLLEE 79 (195)
T ss_pred cCCCEEEEEcCCCCCcchHHHHHHHHc-----CceeecHHHHHHHHHccccChHHHHH-HHHHHcCCcCcHHHHHHHHHH
Confidence 467899999999999999999999998 677888654 4443322 11111100 00000 001111 2
Q ss_pred HHHhCC--CeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccc--------ccc-
Q psy17388 89 MFAECG--FIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKS--------FTG- 157 (272)
Q Consensus 89 ~~~~~g--~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~--------~~~- 157 (272)
.+.+.+ ...++|+.--.......+..... +.+-+++|++|+.+++.+|+.+|.....|..+... +..
T Consensus 80 am~~~~~~~~fLIDGyPR~~~q~~~fe~~i~--~~~~fvl~fdc~ee~~l~Rll~R~q~~~R~DDn~esikkR~et~~~~ 157 (195)
T KOG3079|consen 80 AMRSSGDSNGFLIDGYPRNVDQLVEFERKIQ--GDPDFVLFFDCPEETMLKRLLHRGQSNSRSDDNEESIKKRLETYNKS 157 (195)
T ss_pred HHHhcCCCCeEEecCCCCChHHHHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHc
Confidence 233332 12666643222233333333332 13568999999999999999887544223322111 000
Q ss_pred ---ccccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388 158 ---VSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 158 ---~~~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
+...|+.-. --..|+. +.+++++...+...+..
T Consensus 158 t~Pvi~~~e~kg-~l~~i~a-~~~~d~Vf~~v~~~id~ 193 (195)
T KOG3079|consen 158 TLPVIEYYEKKG-KLLKINA-ERSVDDVFEEVVTAIDA 193 (195)
T ss_pred chHHHHHHHccC-cEEEecC-CCCHHHHHHHHHHHhhc
Confidence 111222211 1235654 57899999998887753
No 148
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=98.78 E-value=9.4e-08 Score=79.32 Aligned_cols=160 Identities=16% Similarity=0.178 Sum_probs=82.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec-CccccccccccCCCCHHHHHHHHHH------------------
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD-GDNLRNGINANLAFSEEDRNENVRR------------------ 82 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld-~D~i~~~l~~~~~~~~~~~~~~~~~------------------ 82 (272)
+++|+|+|+|||||+|+++.|.+..+. ++...... +...+.+-..+..|....+.+..+.
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~-~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YG 80 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPD-AFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYG 80 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCc-ceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCcc
Confidence 468999999999999999999988521 11111111 1112221111111110011111000
Q ss_pred -HHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEe-CCHHHHHHhhhhhhhhhhhhcccc-cccccc
Q psy17388 83 -AAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVN-TPVEICEQRDVKGHYKKAREGKIK-SFTGVS 159 (272)
Q Consensus 83 -i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~-~~~e~~~~Rl~~r~~~~~r~~~~~-~~~~~~ 159 (272)
-...+....+.|.++|.+.. + .....++.. ....++||+. .+.+++.+|+.+|..... ..+. .+....
T Consensus 81 t~~~~i~~~~~~~~~~ild~~-~--~~~~~l~~~----~~~~~vIfi~~~s~~~l~~rl~~R~~~~~--~~i~~rl~~a~ 151 (184)
T smart00072 81 TSKETIRQVAEQGKHCLLDID-P--QGVKQLRKA----QLYPIVIFIAPPSSEELERRLRGRGTETA--ERIQKRLAAAQ 151 (184)
T ss_pred cCHHHHHHHHHcCCeEEEEEC-H--HHHHHHHHh----CCCcEEEEEeCcCHHHHHHHHHhcCCCCH--HHHHHHHHHHH
Confidence 11234455567888887743 2 222333322 2344689997 667889999965521100 0000 011111
Q ss_pred ccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388 160 QPYEAPKNPDLILETVNVPVEKCANSVLDMIAAK 193 (272)
Q Consensus 160 ~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~ 193 (272)
.....+...+.+|+++ +++++.+++.+.|.+.
T Consensus 152 ~~~~~~~~fd~~I~n~--~l~~~~~~l~~~i~~~ 183 (184)
T smart00072 152 KEAQEYHLFDYVIVND--DLEDAYEELKEILEAE 183 (184)
T ss_pred HHHhhhccCCEEEECc--CHHHHHHHHHHHHHhc
Confidence 1111123467888875 7999999999988753
No 149
>PRK14529 adenylate kinase; Provisional
Probab=98.77 E-value=1.4e-07 Score=80.64 Aligned_cols=113 Identities=12% Similarity=0.127 Sum_probs=62.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec-CccccccccccCCCCHHHHHHHHH--------HHHHHH-HHHHhC
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD-GDNLRNGINANLAFSEEDRNENVR--------RAAECA-KMFAEC 93 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld-~D~i~~~l~~~~~~~~~~~~~~~~--------~i~~~~-~~~~~~ 93 (272)
.|+|.|+|||||||+|+.|++.+ ++.+++ +|.+++....+..+....+ ..+. .+..+. ..+.+.
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~-----~~~~is~gdllr~~i~~~t~lg~~i~-~~i~~G~lvpdei~~~lv~~~l~~~ 75 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKY-----DLAHIESGAIFREHIGGGTELGKKAK-EYIDRGDLVPDDITIPMILETLKQD 75 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-----CCCCcccchhhhhhccCCChHHHHHH-HHHhccCcchHHHHHHHHHHHHhcc
Confidence 48999999999999999999999 455565 4455543322211111100 0000 011111 122221
Q ss_pred -CCeEEEcCCCCcHHHHHHHHHHHHhCC-CceEEEEEeCCHHHHHHhhhhh
Q psy17388 94 -GFIALCSFVSPTAAARDRAREIHRNAN-LEFFEVFVNTPVEICEQRDVKG 142 (272)
Q Consensus 94 -g~~VI~d~~~~~~~~r~~~~~~~~~~g-~~~~~V~L~~~~e~~~~Rl~~r 142 (272)
...+|.|+.-......+.+...+...| .+..+|+|++|.+++.+|+..|
T Consensus 76 ~~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R 126 (223)
T PRK14529 76 GKNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGR 126 (223)
T ss_pred CCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCC
Confidence 234555543223333344444443333 2446899999999999999765
No 150
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.76 E-value=8e-08 Score=89.43 Aligned_cols=115 Identities=20% Similarity=0.208 Sum_probs=74.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc----cC-C------CCH--------------H
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA----NL-A------FSE--------------E 74 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~----~~-~------~~~--------------~ 74 (272)
.+|.+|+++|++||||||+|..|+.++ |+. .++.+|.+++.+.. +. + |.. .
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~l---g~~-~ii~tD~iR~~lr~~i~~e~~P~Lh~Sty~A~~~~~~~~~~~~~~~ 328 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRL---GIT-RIVSTDAVREVLRAMVSKDLLPTLHASTFNAWRALLPPGEGLPAEP 328 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc---CCc-EEeehhHHHHHHHhhcchhhccchhhchhhHHhhccCccccccccc
Confidence 468999999999999999999999999 432 36788877653321 00 0 000 0
Q ss_pred HHHH-----------HHHHHHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCC-HHHHHHhhhhh
Q psy17388 75 DRNE-----------NVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTP-VEICEQRDVKG 142 (272)
Q Consensus 75 ~~~~-----------~~~~i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~-~e~~~~Rl~~r 142 (272)
.... ....+..++...+..|..||++++........ .....+...+.+++.++ .+...+|...|
T Consensus 329 ~~~~vi~Gf~~q~~~V~~gi~~vI~r~l~eG~SvIIEGVHl~P~~i~----~~~~~~~~~i~flv~isdeeeH~~Rf~~R 404 (475)
T PRK12337 329 TRAEVLRGFRDQVQQVAVGLGAIQERSAQEGTSLVLEGVHLVPGYLR----HPYQAGALVVPMLVTLPDEALHRRRFELR 404 (475)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEECCCCCHHHHH----HHHhcCCceEEEEEEECCHHHHHHHHHHH
Confidence 0001 11123445667788999999999888766544 22334556666777775 55667777665
No 151
>KOG3220|consensus
Probab=98.73 E-value=1.2e-07 Score=78.20 Aligned_cols=150 Identities=15% Similarity=0.157 Sum_probs=84.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccc-ccc-----------------------------CCCC
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGI-NAN-----------------------------LAFS 72 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l-~~~-----------------------------~~~~ 72 (272)
.+|.++|..||||||+++.+. .+ ++..+|.|.+.+.. .++ ..|+
T Consensus 2 ~iVGLTGgiatGKStVs~~f~-~~-----G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~ 75 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVFK-AL-----GIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFS 75 (225)
T ss_pred eEEEeecccccChHHHHHHHH-Hc-----CCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhC
Confidence 478999999999999999998 44 45668888653321 110 1144
Q ss_pred HHHHHHHHHH----------HHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388 73 EEDRNENVRR----------AAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG 142 (272)
Q Consensus 73 ~~~~~~~~~~----------i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r 142 (272)
+..+...... +.++.+.++.....||.|..--+.. -+..+ -..+|.+.||.++..+|+-.|
T Consensus 76 ~~~~r~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDiPLLFE~---~~~~~------~~~tvvV~cd~~~Ql~Rl~~R 146 (225)
T KOG3220|consen 76 DPKKRQALNKITHPAIRKEMFKEILKLLLRGYRVIVLDIPLLFEA---KLLKI------CHKTVVVTCDEELQLERLVER 146 (225)
T ss_pred CHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEechHHHHH---hHHhh------eeeEEEEEECcHHHHHHHHHh
Confidence 3333222221 1344555555556777775332211 12222 236788999999999999766
Q ss_pred hhhhhhhccccccccccccCC---CCCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388 143 HYKKAREGKIKSFTGVSQPYE---APKNPDLILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 143 ~~~~~r~~~~~~~~~~~~~ye---~~~~~~~~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
.. . .....+ .++.++.. .-..++++|||+ .++++..+++...+..
T Consensus 147 d~-l-se~dAe--~Rl~sQmp~~~k~~~a~~Vi~Nn-g~~~~l~~qv~~v~~~ 194 (225)
T KOG3220|consen 147 DE-L-SEEDAE--NRLQSQMPLEKKCELADVVIDNN-GSLEDLYEQVEKVLAL 194 (225)
T ss_pred cc-c-cHHHHH--HHHHhcCCHHHHHHhhheeecCC-CChHHHHHHHHHHHHH
Confidence 31 0 000000 00111111 113568899874 5888888887776654
No 152
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=98.73 E-value=1.5e-08 Score=83.93 Aligned_cols=35 Identities=23% Similarity=0.382 Sum_probs=28.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
++|.|+|..||||||+++.|++ + ++.++|.|.+.+
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~-----G~~vidaD~i~~ 35 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-L-----GFPVIDADEIAH 35 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-T-----T-EEEEHHHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-C-----CCCEECccHHHH
Confidence 5799999999999999999998 5 567788776543
No 153
>PRK15453 phosphoribulokinase; Provisional
Probab=98.71 E-value=1.2e-07 Score=82.99 Aligned_cols=44 Identities=25% Similarity=0.406 Sum_probs=39.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
.++.+|+|+|.|||||||+|++|++.+...+.++.+++.|.+..
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 46679999999999999999999999976677788999998875
No 154
>PLN02348 phosphoribulokinase
Probab=98.71 E-value=1.4e-07 Score=86.31 Aligned_cols=29 Identities=17% Similarity=0.276 Sum_probs=26.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIA 48 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~ 48 (272)
.++.+|.|.|.|||||||+|+.|++.|+.
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 56789999999999999999999999964
No 155
>PLN02459 probable adenylate kinase
Probab=98.69 E-value=2e-07 Score=81.17 Aligned_cols=112 Identities=13% Similarity=0.112 Sum_probs=61.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc-ccccccccCCCCHHHHHHHHH--------HHHHHHHH-H
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN-LRNGINANLAFSEEDRNENVR--------RAAECAKM-F 90 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~-i~~~l~~~~~~~~~~~~~~~~--------~i~~~~~~-~ 90 (272)
+++.|+|.|+|||||||+|+.|++.+ ++.+++..+ ++..+..+..+..... ..+. -+..+... +
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~~~-----~~~~is~gdllR~ei~~~t~lg~~i~-~~~~~G~lVPdeiv~~ll~~~l 101 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSKLL-----GVPHIATGDLVREEIKSSGPLGAQLK-EIVNQGKLVPDEIIFSLLSKRL 101 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHh-----CCcEEeCcHHHHHHHhccchhHHHHH-HHHHcCCccCHHHHHHHHHHHH
Confidence 44668889999999999999999998 567777544 4443332211111000 0000 01111211 1
Q ss_pred Hh----CCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388 91 AE----CGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG 142 (272)
Q Consensus 91 ~~----~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r 142 (272)
.+ ....+|.|+. | ...++...+-.... ...+|+|++|.+++.+|+..|
T Consensus 102 ~~~~~~~~~g~iLDGF-P--Rt~~Qa~~Le~~~~-id~Vi~L~v~d~~l~~Rl~gR 153 (261)
T PLN02459 102 EAGEEEGESGFILDGF-P--RTVRQAEILEGVTD-IDLVVNLKLREEVLVEKCLGR 153 (261)
T ss_pred hcccccCCceEEEeCC-C--CCHHHHHHHHhcCC-CCEEEEEECCHHHHHHHhhcc
Confidence 11 1234556542 3 22233222222112 346899999999999999766
No 156
>KOG0636|consensus
Probab=98.68 E-value=3e-09 Score=94.08 Aligned_cols=70 Identities=49% Similarity=0.881 Sum_probs=62.1
Q ss_pred hhhhccCCceecCchhHHHHHHHhhccccCccCCCCHHHHHhhhhhc--ccCCCC--ccceeEEEecChhhhhh
Q psy17388 201 FFFIEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFN--TLDSNV--NQSVAIVLAVTGEDKQR 270 (272)
Q Consensus 201 l~~~~~~~~~~~~~~~~~~~~~~~~g~~~pl~gfm~~~~~~~v~~~~--~l~~~~--~~~~pi~l~~~~~~~~~ 270 (272)
-.++.++|+|.|+..++.|..++.+||.|||+|||.+.+|.+.+|+. ||-||. ..++||+|+++.+++..
T Consensus 71 kae~~d~p~i~l~~vdl~w~hv~segwasplrGfmre~e~lqtlhfn~~~l~~GS~vnmslPivlaidd~~K~~ 144 (466)
T KOG0636|consen 71 KAEAEDDPRIKLNTVDLEWVHVLSEGWASPLRGFMRESEFLQTLHFNSLRLVDGSVVNMSLPIVLAIDDDQKTP 144 (466)
T ss_pred hhhhccCCceeeeeeeeEEeeecchhhhccccCcccchhHHhheeccceeecCceEEEeeccEEEecCcccccc
Confidence 34588999999999999999999999999999999999999999986 566775 58999999999887653
No 157
>PLN02842 nucleotide kinase
Probab=98.68 E-value=1.7e-07 Score=88.36 Aligned_cols=108 Identities=15% Similarity=0.090 Sum_probs=57.0
Q ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc-cccccccCCCCHH-----------HHHHHHHHHHHHHHHH-Hh
Q psy17388 26 LFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL-RNGINANLAFSEE-----------DRNENVRRAAECAKMF-AE 92 (272)
Q Consensus 26 ~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i-~~~l~~~~~~~~~-----------~~~~~~~~i~~~~~~~-~~ 92 (272)
+|.|+|||||||+|+.|++.+ ++.+++.+++ +..+..+...... ........+.+.+... ..
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~l-----g~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~ 75 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKF-----GLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAK 75 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHh-----CCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCcccc
Confidence 478999999999999999999 5566665443 3322211000000 0011111111111110 11
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388 93 CGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG 142 (272)
Q Consensus 93 ~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r 142 (272)
.+.+|+ |+ .|. .......+......+.++|+|++|.+++.+|+.+|
T Consensus 76 ~~G~IL-DG-fPR--t~~Qa~~Le~~~~~PDlVI~LDvpdevlleRl~gR 121 (505)
T PLN02842 76 EKGWLL-DG-YPR--SFAQAQSLEKLKIRPDIFILLDVPDEILIDRCVGR 121 (505)
T ss_pred CCcEEE-eC-CCC--cHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcc
Confidence 222444 64 332 22233322222223668999999999999998766
No 158
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.67 E-value=2.5e-07 Score=79.53 Aligned_cols=43 Identities=23% Similarity=0.281 Sum_probs=32.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEE-ecCccc
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYA-LDGDNL 61 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~-ld~D~i 61 (272)
..++.+|.|.|++||||||+++.|+..+...+..+.. +..|.+
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~ 73 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGF 73 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccc
Confidence 3578899999999999999999999999765444333 444443
No 159
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.66 E-value=1.3e-07 Score=80.84 Aligned_cols=39 Identities=13% Similarity=0.150 Sum_probs=31.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH--cCCCEEEecCcccc
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIA--QGIPAYALDGDNLR 62 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~--~g~~~~~ld~D~i~ 62 (272)
+|.|.|++||||||+|+.|+..+.. .+..+.++..|.+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 4789999999999999999999853 34456777777664
No 160
>PLN02165 adenylate isopentenyltransferase
Probab=98.64 E-value=2.8e-07 Score=82.78 Aligned_cols=122 Identities=10% Similarity=0.149 Sum_probs=69.0
Q ss_pred hcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc--cccccc-----------cCC------CCHH---
Q psy17388 17 KEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL--RNGINA-----------NLA------FSEE--- 74 (272)
Q Consensus 17 ~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i--~~~l~~-----------~~~------~~~~--- 74 (272)
..+.++.+|+|.|++||||||+|..|++.+ +..+++.|.+ ..++.. ..+ ....
T Consensus 38 ~~~~~g~iivIiGPTGSGKStLA~~LA~~l-----~~eIIsaDs~QvYkgldIgTakpt~~er~gv~Hhli~~~~~~~~~ 112 (334)
T PLN02165 38 EQNCKDKVVVIMGATGSGKSRLSVDLATRF-----PSEIINSDKMQVYDGLKITTNQITIQDRRGVPHHLLGELNPDDGE 112 (334)
T ss_pred ccCCCCCEEEEECCCCCcHHHHHHHHHHHc-----CCceecCChheeECCcccccCCCCHHHHcCCChhhhheeccccce
Confidence 345677899999999999999999999998 3344555543 222210 000 0000
Q ss_pred -HHHHHHHHHHHHHHHHHhCCCeEE-EcCCCCcHHHHHHHHH-HH--------------Hh-CCCceEEEEEeCCHHHHH
Q psy17388 75 -DRNENVRRAAECAKMFAECGFIAL-CSFVSPTAAARDRARE-IH--------------RN-ANLEFFEVFVNTPVEICE 136 (272)
Q Consensus 75 -~~~~~~~~i~~~~~~~~~~g~~VI-~d~~~~~~~~r~~~~~-~~--------------~~-~g~~~~~V~L~~~~e~~~ 136 (272)
....+.+.....+..+...|...| +.++.. +...+.. .. .. ...++++++|+++.+++.
T Consensus 113 ~sv~~F~~~a~~~I~~i~~~~~~PI~vGGTgl---Yi~aLl~g~~dpe~~p~~tg~~~~s~~~~~~~~~i~l~~dr~~L~ 189 (334)
T PLN02165 113 LTASEFRSLASLSISEITSRQKLPIVAGGSNS---FIHALLADRFDPEIYPFSSGSSLISSDLRYDCCFIWVDVSEPVLF 189 (334)
T ss_pred eeHHHHHHHHHHHHHHHHHCCCcEEEECChHH---HHHHHHcCCCCCccChhhcCCCccccccCCCeEEEEECCCHHHHH
Confidence 112333333445556666665544 443321 2111111 00 00 113456789999999999
Q ss_pred Hhhhhhhhhh
Q psy17388 137 QRDVKGHYKK 146 (272)
Q Consensus 137 ~Rl~~r~~~~ 146 (272)
+|+.+|....
T Consensus 190 ~RI~~Rvd~M 199 (334)
T PLN02165 190 EYLSKRVDEM 199 (334)
T ss_pred HHHHHHHHHH
Confidence 9998885433
No 161
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.62 E-value=6.7e-07 Score=88.24 Aligned_cols=121 Identities=21% Similarity=0.198 Sum_probs=78.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc-cCCC-CH-HHHHHHHHHHHH----HHHHHHhCC
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA-NLAF-SE-EDRNENVRRAAE----CAKMFAECG 94 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~-~~~~-~~-~~~~~~~~~i~~----~~~~~~~~g 94 (272)
..+|++.|+||+||||+|+.|++.|.-.|+++.++..+.++..+.. ...+ .. ..+....+.... +...+.+.|
T Consensus 215 ~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~v~~~G 294 (664)
T PTZ00322 215 SLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRLERRGGAVSSPTGAAEVEFRIAKAIAHDMTTFICKTD 294 (664)
T ss_pred ceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4689999999999999999999999766777777777777766542 2111 11 011111222222 222345568
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHhCCC----ceEEEEEeCCHHHHHHhhhhh
Q psy17388 95 FIALCSFVSPTAAARDRAREIHRNANL----EFFEVFVNTPVEICEQRDVKG 142 (272)
Q Consensus 95 ~~VI~d~~~~~~~~r~~~~~~~~~~g~----~~~~V~L~~~~e~~~~Rl~~r 142 (272)
.++|.|..+.....|..+.+.+++.|. .++.|..-|+...+.+|+..|
T Consensus 295 gvaI~DatN~t~~rR~~~~~~~~~~~~~~~~~vifle~vc~~~~~i~~ni~r 346 (664)
T PTZ00322 295 GVAVLDGTNTTHARRMALLRAIRETGLIRMTRVVFVEVVNNNSETIRRNVLR 346 (664)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHcCCCccCcEEEEEEeCCCHHHHHHHHHH
Confidence 899999999987777666666666654 455555566776666665433
No 162
>PRK05439 pantothenate kinase; Provisional
Probab=98.61 E-value=3.5e-07 Score=81.74 Aligned_cols=45 Identities=11% Similarity=0.084 Sum_probs=36.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEecCccccc
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQ--GIPAYALDGDNLRN 63 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~--g~~~~~ld~D~i~~ 63 (272)
..+|.+|.|+|+|||||||+|+.|+..+... +.++..+..|.+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~ 129 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLY 129 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccccc
Confidence 3578899999999999999999999988642 45677888887753
No 163
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.61 E-value=2e-07 Score=64.75 Aligned_cols=33 Identities=27% Similarity=0.454 Sum_probs=27.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG 58 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~ 58 (272)
+|+++|.|||||||++++|++.+ .+.++.+++.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l--~~~~~~~i~~ 33 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL--GGRSVVVLDE 33 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEeE
Confidence 47899999999999999999998 3456766654
No 164
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=98.58 E-value=4e-08 Score=90.36 Aligned_cols=163 Identities=17% Similarity=0.202 Sum_probs=83.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHH-HHHHHHHHHHHHhCCCeEE
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNEN-VRRAAECAKMFAECGFIAL 98 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~-~~~i~~~~~~~~~~g~~VI 98 (272)
.+|.+|+|+|.+||||||++..|.+.|..+ +++.++..+ .....++...+..+ +++....+..+...+..++
T Consensus 3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V~~ik~~------~~~~~~d~~~~d~~~~~~aga~~~~~~~~~~~~~ 75 (369)
T PRK14490 3 FHPFEIAFCGYSGSGKTTLITALVRRLSER-FSVGYYKHG------CHRFDIDREGKDSDLARKAGASTVMISDPEKHAL 75 (369)
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHHHhhC-ceEEEEEeC------CCCCCCCcccchHHHHHhccCcEEEEecCCEEEE
Confidence 468899999999999999999999999776 677766421 11122333222222 2222211222223344444
Q ss_pred EcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHH--HHHHhhhhhhhhhhhhccccccccccccCCCCCCCcEEEe-CC
Q psy17388 99 CSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVE--ICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILE-TV 175 (272)
Q Consensus 99 ~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e--~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~~~~~~~Id-t~ 175 (272)
+....+ .+...+.......+-++..|-+++.. ++.+|..+. ......++.+++.++...++.+..++..++ .+
T Consensus 76 ~~~~~~---~~~~~~~~~~~~D~vlvEG~k~~~~pki~~~~~~~~~-~~~~~~~~~~~v~av~~~~~~~~~~~~~~p~~~ 151 (369)
T PRK14490 76 IAGGPP---DPLLERGAFLDCDLLLVEGLKELPLPKILLVDRERKI-LDLLEQGSVTNVVALVVPDDPASYPDFGLPVFH 151 (369)
T ss_pred EEeCCC---ChHHHHhccCCCCEEEECCCCCCCCCeEEEEeCCCCc-ccccccCCCCCEEEEEECCcccccccCCCcccC
Confidence 443332 11111112222223355566666655 444443211 111122234455555554544322222222 12
Q ss_pred CCCHHHHHHHHHHHHHhC
Q psy17388 176 NVPVEKCANSVLDMIAAK 193 (272)
Q Consensus 176 ~~~~ee~~~~I~~~L~~~ 193 (272)
-.+++++++.|++++..+
T Consensus 152 ~~~~~~~~~~i~~~~~~~ 169 (369)
T PRK14490 152 RDDIAAIADFIEGHLLGR 169 (369)
T ss_pred cccHHHHHHHHHHHHhcc
Confidence 347899999999988764
No 165
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=98.58 E-value=4e-07 Score=72.99 Aligned_cols=108 Identities=17% Similarity=0.203 Sum_probs=54.4
Q ss_pred EEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc-cccccccCCCCHHHHHHHH--------HHHHHHHHH-HH--hCC
Q psy17388 27 FPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL-RNGINANLAFSEEDRNENV--------RRAAECAKM-FA--ECG 94 (272)
Q Consensus 27 l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i-~~~l~~~~~~~~~~~~~~~--------~~i~~~~~~-~~--~~g 94 (272)
|.|+|||||||+|+.|++++ ++.+++..++ ++.+.........- ...+ ..+..+.+. +. ...
T Consensus 1 i~G~PgsGK~t~~~~la~~~-----~~~~is~~~llr~~~~~~s~~g~~i-~~~l~~g~~vp~~~v~~ll~~~l~~~~~~ 74 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY-----GLVHISVGDLLREEIKSDSELGKQI-QEYLDNGELVPDELVIELLKERLEQPPCN 74 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH-----TSEEEEHHHHHHHHHHTTSHHHHHH-HHHHHTTSS--HHHHHHHHHHHHHSGGTT
T ss_pred CcCCCCCChHHHHHHHHHhc-----CcceechHHHHHHHHhhhhHHHHHH-HHHHHhhccchHHHHHHHHHHHHhhhccc
Confidence 67999999999999999999 6777775443 33222110000000 0000 001112211 11 123
Q ss_pred CeEEEc-CCCCcHHHHHHHHHHHH-hCCCceEEEEEeCCHHHHHHhhhh
Q psy17388 95 FIALCS-FVSPTAAARDRAREIHR-NANLEFFEVFVNTPVEICEQRDVK 141 (272)
Q Consensus 95 ~~VI~d-~~~~~~~~r~~~~~~~~-~~g~~~~~V~L~~~~e~~~~Rl~~ 141 (272)
..+|.| +... ......+...+. ....+..+|+|+||.+++.+|+..
T Consensus 75 ~g~ildGfPrt-~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~ 122 (151)
T PF00406_consen 75 RGFILDGFPRT-LEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ 122 (151)
T ss_dssp TEEEEESB-SS-HHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT
T ss_pred ceeeeeecccc-HHHHHHHHHHHhhcccchheeeccccchhhhhhhccc
Confidence 344444 3322 222333333222 233355889999999999999853
No 166
>PLN02772 guanylate kinase
Probab=98.53 E-value=3.3e-07 Score=83.78 Aligned_cols=165 Identities=16% Similarity=0.190 Sum_probs=82.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHH-cCCCEEEecCcccccccc--ccCCCCHHHHHH-----------------H
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIA-QGIPAYALDGDNLRNGIN--ANLAFSEEDRNE-----------------N 79 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~-~g~~~~~ld~D~i~~~l~--~~~~~~~~~~~~-----------------~ 79 (272)
...++|+|+|++||||||+.+.|.+.++. .+..+.+. +..-+.+-. .++.|...+..+ +
T Consensus 133 ~~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshT-TR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn~ 211 (398)
T PLN02772 133 NAEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHT-TRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNL 211 (398)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhhhcccccccccccc-CCCCcccccCCceEeeCCHHHHHHHHHhCccceeeeecCcc
Confidence 34579999999999999999999887631 11111111 111111000 012222111000 0
Q ss_pred HHHHHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccc-cccc
Q psy17388 80 VRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKS-FTGV 158 (272)
Q Consensus 80 ~~~i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~-~~~~ 158 (272)
|-.-.+.....+++|..+|.+. .+ .....+++.. -.++.++.+..+.+++.+|+..|.... ...+.. +...
T Consensus 212 YGTsk~~V~~vl~~Gk~vILdL-D~--qGar~Lr~~~---l~~v~IFI~PPSlEeLe~RL~~RGtes--eE~I~kRL~~A 283 (398)
T PLN02772 212 YGTSIEAVEVVTDSGKRCILDI-DV--QGARSVRASS---LEAIFIFICPPSMEELEKRLRARGTET--EEQIQKRLRNA 283 (398)
T ss_pred ccccHHHHHHHHHhCCcEEEeC-CH--HHHHHHHHhc---CCeEEEEEeCCCHHHHHHHHHhcCCCC--HHHHHHHHHHH
Confidence 1111234455667888888763 22 2223333321 113333444557899999986552110 000100 0001
Q ss_pred cccCC---CCCCCcEEEeCCCCCHHHHHHHHHHHHHhCCC
Q psy17388 159 SQPYE---APKNPDLILETVNVPVEKCANSVLDMIAAKGL 195 (272)
Q Consensus 159 ~~~ye---~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~~~ 195 (272)
....+ .+...+.+|.++ +++++.+++.+.|...+-
T Consensus 284 ~~Ei~~~~~~~~fD~vIvND--dLe~A~~~L~~iL~~~~~ 321 (398)
T PLN02772 284 EAELEQGKSSGIFDHILYND--NLEECYKNLKKLLGLDGL 321 (398)
T ss_pred HHHHhhccccCCCCEEEECC--CHHHHHHHHHHHHhhcCc
Confidence 01111 122457788765 899999999999987763
No 167
>PRK07429 phosphoribulokinase; Provisional
Probab=98.53 E-value=5.3e-07 Score=81.40 Aligned_cols=40 Identities=23% Similarity=0.215 Sum_probs=31.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
.++.+|.|+|.+||||||+++.|+..++..+ +..+..|.+
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~--~~vi~~Dd~ 45 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADLLGEEL--VTVICTDDY 45 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhHhccCc--eEEEEeccc
Confidence 5678999999999999999999999984332 334445555
No 168
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.53 E-value=8.2e-07 Score=77.33 Aligned_cols=40 Identities=28% Similarity=0.512 Sum_probs=36.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
+|+++|.|||||||++++|.+.|...|.++.+++.|.+..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 5899999999999999999999987788889999998876
No 169
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=98.52 E-value=1.1e-06 Score=75.09 Aligned_cols=168 Identities=15% Similarity=0.232 Sum_probs=89.9
Q ss_pred hhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccC-----C------CCHH---------
Q psy17388 15 DFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANL-----A------FSEE--------- 74 (272)
Q Consensus 15 ~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~-----~------~~~~--------- 74 (272)
.-+..+.|.+|+|.|.||.||||+|..||.+| |+.. .+.+|.+|+.+.+-. + |+..
T Consensus 82 ~ir~~~~p~IILIGGasGVGkStIA~ElA~rL---gI~~-visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~ 157 (299)
T COG2074 82 RIRKMKRPLIILIGGASGVGKSTIAGELARRL---GIRS-VISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDE 157 (299)
T ss_pred HHhccCCCeEEEecCCCCCChhHHHHHHHHHc---CCce-eecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCC
Confidence 34455679999999999999999999999999 6654 588898877553210 0 1000
Q ss_pred --------H-HHHHHHHHHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeC-CHHHHHHhhhhhhh
Q psy17388 75 --------D-RNENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNT-PVEICEQRDVKGHY 144 (272)
Q Consensus 75 --------~-~~~~~~~i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~-~~e~~~~Rl~~r~~ 144 (272)
+ .....-.+..++......|..+|..++.-.+...+. ..- +...+.++|.+ +.+....|...|..
T Consensus 158 ~piiaGF~dqa~~V~~GI~~VI~RAi~eG~~lIIEGvHlVPg~i~~---~~~--~~n~~~~~l~i~dee~Hr~RF~~R~~ 232 (299)
T COG2074 158 NPIIAGFEDQASAVMVGIEAVIERAIEEGEDLIIEGVHLVPGLIKE---EAL--GNNVFMFMLYIADEELHRERFYDRIR 232 (299)
T ss_pred cchhhhHHHHhHHHHHHHHHHHHHHHhcCcceEEEeeeeccccccH---hhh--ccceEEEEEEeCCHHHHHHHHHHHHH
Confidence 0 001111223455566778877776654432222111 111 12345556655 56666777766632
Q ss_pred hh--hhhc--ccccccccc--ccCC--CCCCCcE-EEeCCCCCHHHHHHHHHHHHHhC
Q psy17388 145 KK--AREG--KIKSFTGVS--QPYE--APKNPDL-ILETVNVPVEKCANSVLDMIAAK 193 (272)
Q Consensus 145 ~~--~r~~--~~~~~~~~~--~~ye--~~~~~~~-~Idt~~~~~ee~~~~I~~~L~~~ 193 (272)
.. .+.+ .++.|..++ ..|. .....++ +|+|+ +.++.++++++.+.+.
T Consensus 233 ~t~~~rp~~Ryl~yf~EiR~I~Dyl~~~Are~gVPvI~n~--di~etv~~il~~i~~~ 288 (299)
T COG2074 233 YTHASRPGGRYLEYFKEIRTIHDYLVERAREHGVPVIEND--DIDETVDRILEDIRKR 288 (299)
T ss_pred HHhccCchhHHHHHHHHHHHHHHHHHHHHHhcCCCeeccc--cHHHHHHHHHHHHHHH
Confidence 11 1111 112222211 1111 0111233 55543 7888888888887764
No 170
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.52 E-value=3.9e-07 Score=80.77 Aligned_cols=43 Identities=12% Similarity=0.112 Sum_probs=33.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEecCcccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQ--GIPAYALDGDNLR 62 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~--g~~~~~ld~D~i~ 62 (272)
.+|.+|.|.|++||||||+|+.|...+... +..+..+..|.+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 568899999999999999999999888531 2246666666654
No 171
>PHA03132 thymidine kinase; Provisional
Probab=98.48 E-value=4.6e-07 Score=86.75 Aligned_cols=33 Identities=24% Similarity=0.421 Sum_probs=28.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD 57 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld 57 (272)
+.+|+|.|..||||||+++.|++.+ |.++..+.
T Consensus 257 ~~fIv~EGidGsGKTTlik~L~e~l---g~~Vi~t~ 289 (580)
T PHA03132 257 ACFLFLEGVMGVGKTTLLNHMRGIL---GDNVLVFP 289 (580)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHh---CCceEEEe
Confidence 7899999999999999999999998 55655444
No 172
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.48 E-value=2.6e-06 Score=75.55 Aligned_cols=115 Identities=19% Similarity=0.232 Sum_probs=70.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc----cC-------CCC----------HHH-H-
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA----NL-------AFS----------EED-R- 76 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~----~~-------~~~----------~~~-~- 76 (272)
.+|.+|+|.|++||||||+|..|+++| |++ .++.+|.+++.+.. +. .|. .+. .
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l---~~~-~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~l 165 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRL---GIR-SVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPVI 165 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh---CCC-EEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhhh
Confidence 578999999999999999999999999 554 36778888743321 00 010 000 0
Q ss_pred -------HHHHHHHHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeC-CHHHHHHhhhhh
Q psy17388 77 -------NENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNT-PVEICEQRDVKG 142 (272)
Q Consensus 77 -------~~~~~~i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~-~~e~~~~Rl~~r 142 (272)
......+..++......|..+|+.++...+.+... .... ....+.+++.+ +.+...+|...|
T Consensus 166 ~g~~~~~~~v~~gi~~~I~~~~~~g~s~IiEGvhl~P~~i~~---~~~~-~~~~i~~~l~i~~ee~h~~RF~~R 235 (301)
T PRK04220 166 YGFERHVEPVSVGVEAVIERALKEGISVIIEGVHIVPGFIKE---KYLE-NPNVFMFVLTLSDEEAHKARFYAR 235 (301)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCcEEEecCCCCHHHHHH---hhhc-CCCEEEEEEEECCHHHHHHHHHHH
Confidence 00111123445566678888888777665554332 2222 22445566664 567788887665
No 173
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=98.38 E-value=1.3e-05 Score=71.86 Aligned_cols=36 Identities=17% Similarity=0.352 Sum_probs=29.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
.++.+|+|+|++||||||+|..|++.+ +..+++.|.
T Consensus 2 ~~~~~i~i~GptgsGKt~la~~la~~~-----~~~iis~Ds 37 (307)
T PRK00091 2 MKPKVIVIVGPTASGKTALAIELAKRL-----NGEIISADS 37 (307)
T ss_pred CCceEEEEECCCCcCHHHHHHHHHHhC-----CCcEEeccc
Confidence 356799999999999999999999998 344455554
No 174
>PHA00729 NTP-binding motif containing protein
Probab=98.33 E-value=3.2e-06 Score=72.05 Aligned_cols=27 Identities=19% Similarity=0.384 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.....|+|+|.||+||||+|.+|++.+
T Consensus 15 ~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 15 NGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 344679999999999999999999998
No 175
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.31 E-value=2.8e-06 Score=81.30 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
..+.+|.|.|++||||||+++.|+..++
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglLp 90 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFMP 90 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhCC
Confidence 3467999999999999999999998873
No 176
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.29 E-value=3.9e-06 Score=74.06 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=28.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR 62 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~ 62 (272)
+|.|+|.+||||||+++.|+..+...+ ...+..|.+.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~--~~vi~~Dd~~ 37 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDL--VTVICLDDYH 37 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCc--eEEEECcccc
Confidence 478999999999999999999885433 3345556553
No 177
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=98.24 E-value=1.1e-05 Score=64.94 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=23.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
+++++++|.||+||||+.+.+.+.+
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 4799999999999999999999988
No 178
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=98.22 E-value=1.7e-05 Score=68.02 Aligned_cols=111 Identities=16% Similarity=0.140 Sum_probs=71.6
Q ss_pred cCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeE
Q psy17388 18 EGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIA 97 (272)
Q Consensus 18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~V 97 (272)
....|.+|+|.|..||||..+.+.|.+.|..+|+.+..+....- .+.+..+ +..+-+.+-..|.+.
T Consensus 27 ~~~~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~~pt~-----------eE~~~p~---lwRfw~~lP~~G~i~ 92 (230)
T TIGR03707 27 ETGARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVALPKPSD-----------RERTQWY---FQRYVQHLPAAGEIV 92 (230)
T ss_pred HcCCCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCH-----------HHHcChH---HHHHHHhCCCCCeEE
Confidence 44579999999999999999999999999766666554432110 0111111 233334455566666
Q ss_pred EEcCCC-------------CcHHH------HHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388 98 LCSFVS-------------PTAAA------RDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG 142 (272)
Q Consensus 98 I~d~~~-------------~~~~~------r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r 142 (272)
|.+..- ....+ ...+.+.+.+.|+.++.+||+.|.++..+|+..+
T Consensus 93 IF~rSwY~~~lv~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IlKfflhIsk~eQ~kRl~~r 156 (230)
T TIGR03707 93 LFDRSWYNRAGVERVMGFCTDEEYEEFLRQVPEFERMLVRDGIHLFKYWLSVSREEQLRRFKAR 156 (230)
T ss_pred EEeCchhhhHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHH
Confidence 654211 10111 1233445566799999999999999999999765
No 179
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=98.21 E-value=1.6e-05 Score=64.12 Aligned_cols=77 Identities=14% Similarity=0.224 Sum_probs=52.6
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHH-hCCCeEEEcCCC
Q psy17388 25 LLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFA-ECGFIALCSFVS 103 (272)
Q Consensus 25 I~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~-~~g~~VI~d~~~ 103 (272)
|+=.+.+||||||+|.+|...+ | .+.++-.|++... .....++ .+...+. ....+|++|..+
T Consensus 2 lvPIAtiGCGKTTva~aL~~LF---g-~wgHvQnDnI~~k----------~~~~f~~---~~l~~L~~~~~~vViaDRNN 64 (168)
T PF08303_consen 2 LVPIATIGCGKTTVALALSNLF---G-EWGHVQNDNITGK----------RKPKFIK---AVLELLAKDTHPVVIADRNN 64 (168)
T ss_pred EeeecCCCcCHHHHHHHHHHHc---C-CCCccccCCCCCC----------CHHHHHH---HHHHHHhhCCCCEEEEeCCC
Confidence 4557899999999999999998 2 1667888887432 1111221 2233332 345688899999
Q ss_pred CcHHHHHHHHHHHHh
Q psy17388 104 PTAAARDRAREIHRN 118 (272)
Q Consensus 104 ~~~~~r~~~~~~~~~ 118 (272)
.....|+++...+..
T Consensus 65 h~~reR~ql~~~~~~ 79 (168)
T PF08303_consen 65 HQKRERKQLFEDVSQ 79 (168)
T ss_pred chHHHHHHHHHHHHH
Confidence 888888888776655
No 180
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.20 E-value=8.8e-07 Score=70.03 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L 46 (272)
+|+|+|++||||||+++.|++.+
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 47899999999999999999986
No 181
>KOG4622|consensus
Probab=98.15 E-value=1.2e-05 Score=66.32 Aligned_cols=119 Identities=19% Similarity=0.209 Sum_probs=73.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcC-CCEEEecCccccccccc--cCCCCHHHHHHHHHHHHHHHHH----------
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQG-IPAYALDGDNLRNGINA--NLAFSEEDRNENVRRAAECAKM---------- 89 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g-~~~~~ld~D~i~~~l~~--~~~~~~~~~~~~~~~i~~~~~~---------- 89 (272)
.++.+.|.|+|||||+++.+.-...+.. .+..++.-|+++-.-.+ +..+. +.|....-.+...+..
T Consensus 2 ~LlaliGiPAaGKSs~c~~ilga~aaLrvrhi~hlcfDDFlmdaTpSaD~a~k-eqRgr~~~~iEk~ISaiqedtdwppq 80 (291)
T KOG4622|consen 2 ALLALIGIPAAGKSSFCRKILGAHAALRVRHIEHLCFDDFLMDATPSADKAAK-EQRGRFECHIEKCISAIQEDTDWPPQ 80 (291)
T ss_pred ceeeeecCcccchhHHHHHHHHHHHHHHHHHHHhhhHHHHhhhcCcchhhhHH-HHhchHHHHHHHHHHHHhcccCCCch
Confidence 3688999999999999998875443211 12233333444321111 11111 1111111111111111
Q ss_pred ---HHh-----CC-CeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388 90 ---FAE-----CG-FIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG 142 (272)
Q Consensus 90 ---~~~-----~g-~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r 142 (272)
... +| .+++|+.++.++..|..+.++++++|.-|=.||+....+.+.+++..|
T Consensus 81 vrrisssgdynsgrhiilcdD~FY~kSMR~k~~ki~kd~GciFG~Iflas~ide~LqaNS~R 142 (291)
T KOG4622|consen 81 VRRISSSGDYNSGRHIILCDDIFYLKSMRHKFQKIAKDHGCIFGIIFLASGIDEALQANSHR 142 (291)
T ss_pred heeccccCCcCCCceEEEechHHHHHHhhhHHHHHHHHcCCeeeeeehhhhHHHHHHhcccc
Confidence 111 23 367788888888999999999999999999999999999999999766
No 182
>KOG3327|consensus
Probab=98.13 E-value=5.8e-06 Score=67.56 Aligned_cols=168 Identities=14% Similarity=0.124 Sum_probs=84.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC-c---ccccc----ccccCCCCHHHHHH-----HHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG-D---NLRNG----INANLAFSEEDRNE-----NVRRAAEC 86 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~-D---~i~~~----l~~~~~~~~~~~~~-----~~~~i~~~ 86 (272)
.++.+|++.|..+|||||.+..|...+...+.++..+.- + .+.+. +.+.....+..... .+... ..
T Consensus 3 ~rg~liV~eGlDrsgKstQ~~~l~~~l~~~~~~~~l~~FP~Rst~iGk~i~~YL~k~~dl~d~~iHLlFSAnRwe~~-~~ 81 (208)
T KOG3327|consen 3 IRGALIVLEGLDRSGKSTQCGKLVESLIPGLDPAELLRFPERSTSIGKLIDGYLRKKSDLPDHTIHLLFSANRWEHV-SL 81 (208)
T ss_pred CCccEEeeeccccCCceeehhHHHHHHHhccChHHhhhcchhcccccHHHHHHHHhccCCcHHHHHHHhccchhhHH-HH
Confidence 578899999999999999999999988533222111100 0 00000 01111111111100 01111 12
Q ss_pred HHHHHhCCCeEEEcCCCCcHHH--------HHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccc
Q psy17388 87 AKMFAECGFIALCSFVSPTAAA--------RDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGV 158 (272)
Q Consensus 87 ~~~~~~~g~~VI~d~~~~~~~~--------r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~ 158 (272)
++.-+..|..+|+|........ .++..+.=.....|..++||+++++.+.+|=. |...|..+.+.....
T Consensus 82 i~e~l~kg~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~gL~KPDlvlfL~v~p~~~a~rgg---fG~Erye~v~fqekv 158 (208)
T KOG3327|consen 82 IKEKLAKGTTLIVDRYSFSGVAYSAAKGLDLDWCKQPDVGLPKPDLVLFLDVSPEDAARRGG---FGEERYETVAFQEKV 158 (208)
T ss_pred HHHHHhcCCeEEEecceecchhhhhhcCCCcchhhCCccCCCCCCeEEEEeCCHHHHHHhcC---cchhHHHHHHHHHHH
Confidence 3334457888888854332111 11211111112247899999999999666632 222332222222222
Q ss_pred cccCC---CCCCCc-EEEeCCCCCHHHHHHHHHHHHHh
Q psy17388 159 SQPYE---APKNPD-LILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 159 ~~~ye---~~~~~~-~~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
...|. .-..+. .++|. +.+++++.++|...++.
T Consensus 159 ~~~~q~l~r~e~~~~~~vDA-s~sve~V~~~V~~i~e~ 195 (208)
T KOG3327|consen 159 LVFFQKLLRKEDLNWHVVDA-SKSVEKVHQQVRSLVEN 195 (208)
T ss_pred HHHHHHHHhccCCCeEEEec-CccHHHHHHHHHHHHHH
Confidence 22222 112334 45665 57999999999766654
No 183
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=98.12 E-value=1e-05 Score=66.82 Aligned_cols=104 Identities=18% Similarity=0.251 Sum_probs=60.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccc-----cccC--CCCH-----------------------
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGI-----NANL--AFSE----------------------- 73 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l-----~~~~--~~~~----------------------- 73 (272)
+|.|.+..|||++|+|++|+++| ++.++|.+.+.... ..+. .+..
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~L-----g~~~~d~~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 75 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKL-----GYPYYDREIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDH 75 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHC-----T--EE-HHHHHHCT------------SS-HHH--HH---HHS----------
T ss_pred CEEECCCCCCChHHHHHHHHHHc-----CCccCCHHHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccc
Confidence 68999999999999999999999 56667775443211 1000 0000
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388 74 EDRNENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG 142 (272)
Q Consensus 74 ~~~~~~~~~i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r 142 (272)
......+....+++..+.+.|..||+..+.. -+++... +.+.|||.+|.+.+.+|+.++
T Consensus 76 ~~~~~~~~~~~~~i~~la~~~~~Vi~GR~a~---------~il~~~~-~~l~V~i~A~~~~Rv~ri~~~ 134 (179)
T PF13189_consen 76 PDDDKIFRAQSEIIRELAAKGNCVIVGRCAN---------YILRDIP-NVLHVFIYAPLEFRVERIMER 134 (179)
T ss_dssp ----HHHHHHHHHHHHHHH---EEEESTTHH---------HHTTT-T-TEEEEEEEE-HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhccCCEEEEecCHh---------hhhCCCC-CeEEEEEECCHHHHHHHHHHH
Confidence 1111222333456677777888888876543 1233332 578999999999999999765
No 184
>PLN02748 tRNA dimethylallyltransferase
Probab=98.09 E-value=4.2e-05 Score=72.03 Aligned_cols=41 Identities=20% Similarity=0.474 Sum_probs=33.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc--ccccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN--LRNGI 65 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~--i~~~l 65 (272)
.++.+|+|.|+.||||||+|..|++.+ +..+++.|. +.+++
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~-----~~eii~~DsmQVYrgL 62 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHF-----PVEIINADSMQVYSGL 62 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhc-----CeeEEcCchheeeCCc
Confidence 567799999999999999999999998 566677774 44444
No 185
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=98.08 E-value=2.6e-05 Score=67.81 Aligned_cols=44 Identities=14% Similarity=0.120 Sum_probs=34.4
Q ss_pred cCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCC--EEEecCccc
Q psy17388 18 EGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIP--AYALDGDNL 61 (272)
Q Consensus 18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~--~~~ld~D~i 61 (272)
.++.|.+|.+.|++|+||||+|+.|+..+...+-. +..+-+|-+
T Consensus 78 ~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGF 123 (283)
T COG1072 78 NQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGF 123 (283)
T ss_pred CCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEecccc
Confidence 34678999999999999999999999999754433 455556654
No 186
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=98.07 E-value=7.9e-05 Score=66.01 Aligned_cols=39 Identities=18% Similarity=0.410 Sum_probs=28.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccc
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGI 65 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l 65 (272)
+|+|+|++|||||++|..|++.+ +..++..|.-.+.+.+
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~---~~~iis~Ds~qvY~~l 39 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKL---NAEIISVDSMQIYKGM 39 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhC---CCcEEEechhheeeec
Confidence 48999999999999999999998 3344444443344433
No 187
>PRK10867 signal recognition particle protein; Provisional
Probab=98.06 E-value=7.2e-05 Score=69.98 Aligned_cols=45 Identities=24% Similarity=0.400 Sum_probs=40.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCEEEecCcccccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQ-GIPAYALDGDNLRNG 64 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~-g~~~~~ld~D~i~~~ 64 (272)
.+|.+|+++|++||||||++..|+..+... |.++.+++.|.+|..
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~a 143 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPA 143 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchH
Confidence 468899999999999999999999999877 889999999987753
No 188
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.04 E-value=1.9e-05 Score=60.94 Aligned_cols=35 Identities=37% Similarity=0.743 Sum_probs=30.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388 25 LLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR 62 (272)
Q Consensus 25 I~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~ 62 (272)
|+|.|+||+||||+++.+++.+ +.+++.++...+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i~~~~~~ 35 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---GFPFIEIDGSELI 35 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---TSEEEEEETTHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhc---ccccccccccccc
Confidence 6899999999999999999998 6677778876654
No 189
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=98.02 E-value=7.4e-05 Score=65.28 Aligned_cols=160 Identities=16% Similarity=0.185 Sum_probs=92.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEE
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIALC 99 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI~ 99 (272)
..|.+|+|.|..||||..+.+.|.+.|..+|+.+..+.... ..+.+.. -+..+-+.+-..|.+.|.
T Consensus 54 ~~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~~Pt-----------~eE~~~p---~lWRfw~~lP~~G~i~IF 119 (264)
T TIGR03709 54 RRSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSFKAPS-----------AEELDHD---FLWRIHKALPERGEIGIF 119 (264)
T ss_pred CCcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeCCCCC-----------HHHHcCc---hHHHHHHhCCCCCeEEEE
Confidence 45899999999999999999999999976666554443211 0011111 123344555566777775
Q ss_pred cCCC-------------CcHHHH------HHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhh-----cccc--
Q psy17388 100 SFVS-------------PTAAAR------DRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKARE-----GKIK-- 153 (272)
Q Consensus 100 d~~~-------------~~~~~r------~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~-----~~~~-- 153 (272)
+..- ....+. ..+...+...|+.++.+||+.|.++..+|+..+....... .++.
T Consensus 120 ~RSWY~~vl~~rv~g~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKffLhIsk~eQ~kRl~~r~~~p~k~Wk~s~~D~~~~ 199 (264)
T TIGR03709 120 NRSHYEDVLVVRVHGLIPKAIWERRYEDINDFERYLTENGTTILKFFLHISKEEQKKRFLARLDDPTKNWKFSPADLKER 199 (264)
T ss_pred cCccccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHCCcEEEEEEEeCCHHHHHHHHHHHhcCCcccccCCHHHHHHH
Confidence 5211 001111 2233445567999999999999999999997653211110 0000
Q ss_pred -ccccccccCC-------CCCCCcEEEeCCCCC--HHHHHHHHHHHHHhC
Q psy17388 154 -SFTGVSQPYE-------APKNPDLILETVNVP--VEKCANSVLDMIAAK 193 (272)
Q Consensus 154 -~~~~~~~~ye-------~~~~~~~~Idt~~~~--~ee~~~~I~~~L~~~ 193 (272)
.+......|+ .+..|-++|+.++.. --.+++.|++.|+..
T Consensus 200 ~~yd~y~~a~e~~l~~T~t~~APW~iI~a~dk~~a~l~v~~~ll~~l~~~ 249 (264)
T TIGR03709 200 AYWDDYMEAYEDALTATSTKHAPWYVVPADDKWFRRLAVAEILLDALESL 249 (264)
T ss_pred HhHHHHHHHHHHHHHhcCCCCCCeEEEcCCCHHHHHHHHHHHHHHHHHHc
Confidence 1111111111 234567888876543 233677777777765
No 190
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.02 E-value=4.8e-05 Score=71.27 Aligned_cols=44 Identities=23% Similarity=0.449 Sum_probs=40.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
.+|.+|+|+|++|+||||++..|+..+...|+.+.+++.|.++.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP 136 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence 46889999999999999999999999988889999999998765
No 191
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=98.00 E-value=6.5e-05 Score=63.77 Aligned_cols=41 Identities=24% Similarity=0.315 Sum_probs=36.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
.++.++.|.|.|||||||+|..++......|.++.|+|.+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~ 57 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEG 57 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 46789999999999999999999998877788899998764
No 192
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=98.00 E-value=8.5e-05 Score=70.29 Aligned_cols=110 Identities=15% Similarity=0.119 Sum_probs=72.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEE
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIAL 98 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI 98 (272)
...|.+|+|.|..||||+++.+.|.+.|..+|+.+..+....-. +....+ +..+-..+-..|.++|
T Consensus 37 ~~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P~~e-----------E~~~~f---lwRfw~~lP~~G~I~I 102 (493)
T TIGR03708 37 AGFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRPSDE-----------ERERPP---MWRFWRRLPPKGKIGI 102 (493)
T ss_pred cCCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCCCHH-----------HhcCcH---HHHHHHhCCCCCeEEE
Confidence 46789999999999999999999999998777766554422111 011111 2233344555666666
Q ss_pred EcCCC-------------CcHHH------HHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388 99 CSFVS-------------PTAAA------RDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG 142 (272)
Q Consensus 99 ~d~~~-------------~~~~~------r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r 142 (272)
.+..- +...+ ...+.+.+...|+.++.+||++|.++..+|+..|
T Consensus 103 FdRSWY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~IlKffLhIsk~EQ~kRl~~r 165 (493)
T TIGR03708 103 FFGSWYTRPLIERLEGRIDEAKLDSHIEDINRFERMLADDGALILKFWLHLSKKQQKERLKKL 165 (493)
T ss_pred EcCcccchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHH
Confidence 54211 11111 1233445567899999999999999999999765
No 193
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.99 E-value=5.5e-05 Score=65.28 Aligned_cols=41 Identities=15% Similarity=0.118 Sum_probs=34.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
..+..++|+|++|+|||+++++++..+...|..+.|+..+.
T Consensus 43 ~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 43 EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 34457999999999999999999998877777788877654
No 194
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.98 E-value=6.9e-05 Score=63.98 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=36.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD 59 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D 59 (272)
.++.++.|.|+||+||||+|..++......|.++.|+|.+
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4678999999999999999999998876678899999988
No 195
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.98 E-value=7.4e-05 Score=61.26 Aligned_cols=34 Identities=15% Similarity=0.301 Sum_probs=28.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD 59 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D 59 (272)
++|+|+|+|||||||+|..++..+ +.++.|+.+.
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~---~~~~~~iat~ 35 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQS---GLQVLYIATA 35 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHc---CCCcEeCcCC
Confidence 479999999999999999999887 4456777654
No 196
>PLN02840 tRNA dimethylallyltransferase
Probab=97.96 E-value=5.1e-05 Score=70.36 Aligned_cols=44 Identities=18% Similarity=0.382 Sum_probs=33.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccc
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGI 65 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l 65 (272)
..++.+|+|.|++||||||+|..|++.+ +..++..|.-.+...+
T Consensus 18 ~~~~~vi~I~GptgsGKTtla~~La~~~---~~~iis~Ds~qvYr~~ 61 (421)
T PLN02840 18 TKKEKVIVISGPTGAGKSRLALELAKRL---NGEIISADSVQVYRGL 61 (421)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHC---CCCeEeccccceecce
Confidence 4567799999999999999999999998 4445555554444433
No 197
>KOG1384|consensus
Probab=97.95 E-value=6.7e-05 Score=66.60 Aligned_cols=113 Identities=12% Similarity=0.226 Sum_probs=69.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc--cccccc-----------c-----CC-CCHHH--HHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL--RNGINA-----------N-----LA-FSEED--RNEN 79 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i--~~~l~~-----------~-----~~-~~~~~--~~~~ 79 (272)
+-.+|+|+|+.|||||-+|-.||.++ +...++.|.+ .+++.. + .+ +.++. ....
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf-----~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~ 80 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRF-----PGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGE 80 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhC-----CceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhccHHH
Confidence 56899999999999999999999998 5555666543 233210 0 01 11111 1122
Q ss_pred HHH-HHHHHHHHHhCCCe-EEEcCCCCcHHHHHHHHHHHHh-------------------CCCceEEEEEeCCHHHHHHh
Q psy17388 80 VRR-AAECAKMFAECGFI-ALCSFVSPTAAARDRAREIHRN-------------------ANLEFFEVFVNTPVEICEQR 138 (272)
Q Consensus 80 ~~~-i~~~~~~~~~~g~~-VI~d~~~~~~~~r~~~~~~~~~-------------------~g~~~~~V~L~~~~e~~~~R 138 (272)
++. ....+..+.+.|.+ ||+.+.+. +... ++.+ .....+.+|++++..++.+|
T Consensus 81 F~~~a~~aie~I~~rgk~PIv~GGs~~---yi~a---l~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda~~~VL~~~ 154 (348)
T KOG1384|consen 81 FEDDASRAIEEIHSRGKLPIVVGGSNS---YLQA---LLSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDADQAVLFER 154 (348)
T ss_pred HHHHHHHHHHHHHhCCCCCEEeCCchh---hHHH---HhhcCCCcccCcccccCCCCCcccccceEEEEEecchHHHHHH
Confidence 333 34556777788865 44444432 2222 2221 01346889999999999999
Q ss_pred hhhhhh
Q psy17388 139 DVKGHY 144 (272)
Q Consensus 139 l~~r~~ 144 (272)
+.+|.-
T Consensus 155 l~~RVD 160 (348)
T KOG1384|consen 155 LDKRVD 160 (348)
T ss_pred HHHHHH
Confidence 988743
No 198
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=97.95 E-value=9.1e-06 Score=69.61 Aligned_cols=109 Identities=13% Similarity=0.113 Sum_probs=64.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEE
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIALC 99 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI~ 99 (272)
..|.+|+|.|..||||+.+.+.|.+.|..+|+.+..+..-.-. +...--+..+-..+-..|.+.|.
T Consensus 29 ~~~vlIl~eG~d~sGKg~~I~~l~~~lDPR~~~v~~~~~pt~e--------------E~~~p~lwRfw~~lP~~G~I~if 94 (228)
T PF03976_consen 29 GIPVLILFEGWDASGKGGTINRLIEWLDPRGFRVHAFGKPTDE--------------ELRRPFLWRFWRALPARGQIGIF 94 (228)
T ss_dssp HHEEEEEEEESTTSSHHHHHHHHHCCS-GGGEEEEE-SS--HH--------------HHTS-TTHHHHTTS--TT-EEEE
T ss_pred CCcEEEEEeccccCCchHHHHHHHHhCCCCeeEEEeCCCCChh--------------HcCCCcHHHHHHhCCCCCEEEEE
Confidence 4569999999999999999999999998777666554321100 00000112233344456666665
Q ss_pred cCCC-------------CcHH------HHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388 100 SFVS-------------PTAA------ARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG 142 (272)
Q Consensus 100 d~~~-------------~~~~------~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r 142 (272)
+..- .... ....+.+.+...|+.++.+||+.|.++..+|+.++
T Consensus 95 ~rSWY~~~l~~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKfflhIsk~eQ~kRl~~~ 156 (228)
T PF03976_consen 95 DRSWYEDVLVERVEGFIDEAEWERRLEEINRFERMLADDGTLIIKFFLHISKKEQKKRLKER 156 (228)
T ss_dssp ES-GGGGGTHHHHTTSSTHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEE--HHHHHHHHHHH
T ss_pred ecchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEEEEeCHHHHHHHHHHH
Confidence 4210 1011 11233444556788999999999999999999765
No 199
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.95 E-value=1.6e-05 Score=65.08 Aligned_cols=40 Identities=30% Similarity=0.528 Sum_probs=35.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
+++++|+|||||||+++.++..+...|..+.++|.|..+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~ 41 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRP 41 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCh
Confidence 6899999999999999999999988888899999987543
No 200
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.95 E-value=1.6e-05 Score=70.12 Aligned_cols=44 Identities=30% Similarity=0.471 Sum_probs=38.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
.++.+|.|+|++|+||||++..|+..+...|..+..++.|.++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~ 113 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRA 113 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCH
Confidence 45789999999999999999999999988888899999997543
No 201
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.93 E-value=1.8e-05 Score=73.68 Aligned_cols=44 Identities=25% Similarity=0.477 Sum_probs=40.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
.+|.+|+|+|++||||||++..|+..+...|..+..++.|.+|.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~ 141 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRA 141 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccch
Confidence 45789999999999999999999999988899999999998873
No 202
>KOG3877|consensus
Probab=97.93 E-value=0.00018 Score=62.57 Aligned_cols=28 Identities=21% Similarity=0.366 Sum_probs=25.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
...++|++.|..|||||++|++||+.|+
T Consensus 69 enSkvI~VeGnI~sGK~klAKelAe~Lg 96 (393)
T KOG3877|consen 69 ENSKVIVVEGNIGSGKTKLAKELAEQLG 96 (393)
T ss_pred ccceEEEEeCCcccCchhHHHHHHHHhC
Confidence 4678999999999999999999999993
No 203
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.92 E-value=1.7e-05 Score=66.63 Aligned_cols=42 Identities=21% Similarity=0.301 Sum_probs=36.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
|.+|+|.|++|+||||.+..|+.++..+|.++.++..|.+|-
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ 42 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRI 42 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSST
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCc
Confidence 689999999999999999999999988888899999998774
No 204
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.92 E-value=6.7e-05 Score=60.14 Aligned_cols=115 Identities=13% Similarity=0.126 Sum_probs=69.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEcC
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIALCSF 101 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI~d~ 101 (272)
|.+.++.|+.||||||+-.-+...+. + .+.+++.|.+...+...-+-. ..-+.-+.+......+.+.|..+....
T Consensus 2 ~~l~IvaG~NGsGKstv~~~~~~~~~--~-~~~~VN~D~iA~~i~p~~p~~--~~i~A~r~ai~~i~~~I~~~~~F~~ET 76 (187)
T COG4185 2 KRLDIVAGPNGSGKSTVYASTLAPLL--P-GIVFVNADEIAAQISPDNPTS--AAIQAARVAIDRIARLIDLGRPFIAET 76 (187)
T ss_pred ceEEEEecCCCCCceeeeeccchhhc--C-CeEEECHHHHhhhcCCCCchH--HHHHHHHHHHHHHHHHHHcCCCcceEE
Confidence 56788999999999999776665552 2 678999999877665321111 111222233333444566776655443
Q ss_pred CCCcHHHHHHHHHHHHhCCCceEEEEEeC-CHHHHHHhhhhh
Q psy17388 102 VSPTAAARDRAREIHRNANLEFFEVFVNT-PVEICEQRDVKG 142 (272)
Q Consensus 102 ~~~~~~~r~~~~~~~~~~g~~~~~V~L~~-~~e~~~~Rl~~r 142 (272)
+......++.++ -++..|.-+...|+-. +.|...+|++.|
T Consensus 77 tLS~~s~~~~ik-~Ak~~Gf~I~L~y~~i~~~elavERVk~R 117 (187)
T COG4185 77 TLSGPSILELIK-TAKAAGFYIVLNYIVIDSVELAVERVKLR 117 (187)
T ss_pred eeccchHHHHHH-HHHhCCeEEEEEEEEeCcHHHHHHHHHHH
Confidence 333334555544 4677776555555554 466788888665
No 205
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.92 E-value=1.1e-05 Score=61.91 Aligned_cols=42 Identities=24% Similarity=0.383 Sum_probs=33.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
+..++|.|+||+||||+++.|+..+...+..+.+++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccc
Confidence 468999999999999999999999854333477787765543
No 206
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.92 E-value=0.0002 Score=66.97 Aligned_cols=45 Identities=29% Similarity=0.418 Sum_probs=39.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCCEEEecCcccccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLI-AQGIPAYALDGDNLRNG 64 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~-~~g~~~~~ld~D~i~~~ 64 (272)
.+|.+|+++|++||||||++..|+..+. ..|.++.+++.|.+|..
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~ 142 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPA 142 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchH
Confidence 4688999999999999999999999986 46888999999987753
No 207
>PRK14974 cell division protein FtsY; Provisional
Probab=97.91 E-value=2.1e-05 Score=71.29 Aligned_cols=44 Identities=27% Similarity=0.546 Sum_probs=39.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
.+|.+|+|+|++|+||||++..|+..+...|..+.+++.|.+|.
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~ 181 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRA 181 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcH
Confidence 35789999999999999999999999988888888899997764
No 208
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.90 E-value=2e-05 Score=63.19 Aligned_cols=34 Identities=24% Similarity=0.404 Sum_probs=29.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEE
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAY 54 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~ 54 (272)
.++-|+++|+||+||||++..+++.|...|+++.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvg 37 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVG 37 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceee
Confidence 3567999999999999999999999988877654
No 209
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.88 E-value=2.4e-05 Score=70.53 Aligned_cols=44 Identities=27% Similarity=0.406 Sum_probs=39.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
.+|.+|.|+|++||||||++..|+..+...|..+.+++.|.++.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~ 155 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRA 155 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccch
Confidence 46789999999999999999999999988888898999887653
No 210
>PRK04296 thymidine kinase; Provisional
Probab=97.88 E-value=0.00016 Score=60.38 Aligned_cols=37 Identities=14% Similarity=0.129 Sum_probs=32.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG 58 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~ 58 (272)
+.+++++|+||+||||.+..++.++..+|..+.++..
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 5789999999999999999999999878888887743
No 211
>PRK13768 GTPase; Provisional
Probab=97.87 E-value=5.3e-05 Score=66.10 Aligned_cols=40 Identities=25% Similarity=0.412 Sum_probs=35.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
+++|++.|++||||||++..++..+...|.++.++|.|.-
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~ 41 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPA 41 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCc
Confidence 4689999999999999999999999888989988887743
No 212
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.86 E-value=0.00018 Score=66.22 Aligned_cols=42 Identities=17% Similarity=0.157 Sum_probs=38.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR 62 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~ 62 (272)
+|.+|.|.|+.||||||++..|+..+...|..+.+++.|..|
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 467999999999999999999999998788889999999776
No 213
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.82 E-value=3.5e-05 Score=69.66 Aligned_cols=42 Identities=24% Similarity=0.296 Sum_probs=37.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
..++.+|.|+|+|||||||++..|...+...|+++.++..|.
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp 94 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDP 94 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 457889999999999999999999999988888888877764
No 214
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.81 E-value=0.00022 Score=61.40 Aligned_cols=41 Identities=17% Similarity=0.295 Sum_probs=35.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCEEEecCcc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQ-GIPAYALDGDN 60 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~-g~~~~~ld~D~ 60 (272)
.++.+++|+|.||+||||++..++..+... |.++.|++.+.
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~ 52 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM 52 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 467899999999999999999998877665 88999988664
No 215
>CHL00181 cbbX CbbX; Provisional
Probab=97.81 E-value=0.00095 Score=59.35 Aligned_cols=30 Identities=27% Similarity=0.599 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcC
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQG 50 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g 50 (272)
++..++|.|+||+||||+|+.+++.+...|
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~la~~~~~~g 87 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMADILYKLG 87 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 466799999999999999999999886443
No 216
>KOG3308|consensus
Probab=97.80 E-value=0.00012 Score=60.86 Aligned_cols=40 Identities=13% Similarity=0.303 Sum_probs=33.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
++-.+|.|.|.+.|||||+|+.|.+.++ ++..+..|++.+
T Consensus 2 ~K~~ivgiSG~TnsGKTTLak~l~~~f~----~~~lIhqDDFyK 41 (225)
T KOG3308|consen 2 MKTLIVGISGCTNSGKTTLAKSLHRFFP----GCSLIHQDDFYK 41 (225)
T ss_pred ceEEEEEeecccCCCHhHHHHHHHHHcc----CCeeeccccccC
Confidence 3447899999999999999999999996 455777777754
No 217
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.79 E-value=4.2e-05 Score=62.76 Aligned_cols=37 Identities=27% Similarity=0.276 Sum_probs=31.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYAL 56 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~l 56 (272)
+++.++.|+|++||||||+++.|...|...|+.+..+
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~I 40 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLI 40 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEE
Confidence 4566999999999999999999999997777655544
No 218
>PRK09169 hypothetical protein; Validated
Probab=97.77 E-value=3.9e-05 Score=81.91 Aligned_cols=108 Identities=10% Similarity=-0.084 Sum_probs=66.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccc-cccC--CCCHHHHHHHHHHHHHHHHHHHhCCCeEE
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGI-NANL--AFSEEDRNENVRRAAECAKMFAECGFIAL 98 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l-~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~VI 98 (272)
...|+|.|++|+||||+++.|+..| +..++|.|.....- ...+ .|.... ...+.....++.++. ...||
T Consensus 2110 ~~aIvLIG~MGaGKTTIGr~LA~~L-----g~~FiDtD~kIeks~GrkI~rIFa~eG--~FRe~Eaa~V~Dllr-~~vVL 2181 (2316)
T PRK09169 2110 AQARRIEREVGPLLQALLQKLAGGL-----RVDKPHSVRKIAKKIGKKIARIQALRG--LSPEQAAARVRDALR-WEVVL 2181 (2316)
T ss_pred hcccceeeCCCCCHhHHHHHHHHHh-----CCCccccHHHHHHHhCCCHHHHHHhcC--chHHHHHHHHHHHhc-CCeEE
Confidence 3469999999999999999999999 56678877543311 1110 011000 111111233334444 44566
Q ss_pred EcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388 99 CSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG 142 (272)
Q Consensus 99 ~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r 142 (272)
...... ......+..+...| ++||+..+.+++.+|+.++
T Consensus 2182 STGGGa--v~~~enr~~L~~~G---lvV~L~an~~tl~~Rty~g 2220 (2316)
T PRK09169 2182 PAEGFG--AAVEQARQALGAKG---LRVMRINNGFAAPDTTYAG 2220 (2316)
T ss_pred eCCCCc--ccCHHHHHHHHHCC---EEEEEECCHHHHHHHhccC
Confidence 554443 34445556666677 7899999999999998654
No 219
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.74 E-value=0.00046 Score=63.67 Aligned_cols=49 Identities=24% Similarity=0.394 Sum_probs=43.7
Q ss_pred hhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccc
Q psy17388 16 FKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNG 64 (272)
Q Consensus 16 ~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~ 64 (272)
.....+|.+|++.|+-||||||.+-.||..|..+|.++..+..|.+|..
T Consensus 94 ~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpA 142 (451)
T COG0541 94 NLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPA 142 (451)
T ss_pred ccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChH
Confidence 3345689999999999999999999999999999999999999998863
No 220
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.72 E-value=8.1e-05 Score=68.92 Aligned_cols=38 Identities=21% Similarity=0.374 Sum_probs=32.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR 62 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~ 62 (272)
|..|+|.|+||+||||+|+.|++.+ +.+++.+|...+.
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l---~~~fi~vD~t~f~ 87 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEATKFT 87 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CChheeecchhhc
Confidence 6789999999999999999999999 6677777765454
No 221
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.72 E-value=4.4e-05 Score=64.97 Aligned_cols=43 Identities=26% Similarity=0.248 Sum_probs=35.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
...+..|+|.|++|+||||+|+.+++.+...+.++.+++...+
T Consensus 35 ~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 35 GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 4567789999999999999999999988766777877775544
No 222
>KOG2134|consensus
Probab=97.72 E-value=0.00021 Score=64.54 Aligned_cols=123 Identities=12% Similarity=0.132 Sum_probs=84.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEcC
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIALCSF 101 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI~d~ 101 (272)
+.+|++.|.|||||||.+...-..- +...+..|.+... +.........+..|..||.|.
T Consensus 269 ~eiV~~vgfp~sGks~f~a~~~~~~-----~y~~vn~d~lg~~----------------~~C~~~~~e~l~~~~sVvidn 327 (422)
T KOG2134|consen 269 GEIVVAVGFPGSGKSTFAAKRVVPN-----GYKIVNADTLGTP----------------QNCLLANAEALKHGKSVVIDN 327 (422)
T ss_pred CcEEEEEecCCCCcchhhhhhcccC-----ceeEeecccCCCc----------------hhhHHHHHHHhhcccEEeeCC
Confidence 3899999999999999988554432 3344555554321 111122345567888999999
Q ss_pred CCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccc--cccccccCCCC
Q psy17388 102 VSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKS--FTGVSQPYEAP 165 (272)
Q Consensus 102 ~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~--~~~~~~~ye~~ 165 (272)
.+|-...|+.+.+.+...+++..++.+.++.+....-+..|..+..-...... +...+..|..|
T Consensus 328 t~pd~~sr~~~~~~a~e~~~p~rcf~~~~s~eq~~hn~~fR~~~~~~~~~~~dm~~~~~k~kf~~p 393 (422)
T KOG2134|consen 328 TNPDAESRKYYLDCATEREIPIRCFEMNSSVEQAQHNNRFRELSDSVKDSGSDMVFNSEKSKFQKP 393 (422)
T ss_pred CCcchHHHHHHhhhHHHhCccceeeeeccHHHhhhccccchhhccchhcccccceeehhhccccCc
Confidence 99999999999999999999999999999999988887666432222222222 33345666655
No 223
>PRK08727 hypothetical protein; Validated
Probab=97.72 E-value=0.0003 Score=60.57 Aligned_cols=41 Identities=24% Similarity=0.270 Sum_probs=34.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
.....++|.|++|+|||+++.+++..+...|..+.|+..+.
T Consensus 39 ~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~ 79 (233)
T PRK08727 39 QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA 79 (233)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH
Confidence 34456999999999999999999998887788888877544
No 224
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=97.71 E-value=7e-05 Score=57.47 Aligned_cols=36 Identities=36% Similarity=0.656 Sum_probs=33.6
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 25 LLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 25 I~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
|+++|.+|+||||++..|++.+..+|.++..+|.|.
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 789999999999999999999988888999999885
No 225
>PLN02796 D-glycerate 3-kinase
Probab=97.69 E-value=5.1e-05 Score=68.60 Aligned_cols=42 Identities=24% Similarity=0.336 Sum_probs=33.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
.+|.+|.|+|++||||||+++.|...+...|..+..+..|.+
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdf 139 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDF 139 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCc
Confidence 467899999999999999999999998654544555555544
No 226
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.68 E-value=8.2e-05 Score=62.67 Aligned_cols=41 Identities=22% Similarity=0.289 Sum_probs=36.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
.++.++.|+|+||||||+++..++......|.++.|+|.+.
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 36789999999999999999999988766788899999875
No 227
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.68 E-value=7.7e-05 Score=57.79 Aligned_cols=42 Identities=31% Similarity=0.455 Sum_probs=33.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
..+..++|.|++|+||||+++.+++.+...+.++.+++....
T Consensus 17 ~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~ 58 (151)
T cd00009 17 PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDL 58 (151)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhh
Confidence 346689999999999999999999998655566766665443
No 228
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.68 E-value=0.00036 Score=63.72 Aligned_cols=47 Identities=23% Similarity=0.205 Sum_probs=35.2
Q ss_pred cchhhhhhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388 9 KESWLRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG 58 (272)
Q Consensus 9 ~~~~~r~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~ 58 (272)
+..-+|.++.+..-...+|-||||+||||+|+.|++.+ +..+..++.
T Consensus 35 ~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~~~sA 81 (436)
T COG2256 35 EGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT---NAAFEALSA 81 (436)
T ss_pred CCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh---CCceEEecc
Confidence 34445666655555567899999999999999999998 556665553
No 229
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=97.67 E-value=6.3e-05 Score=60.72 Aligned_cols=36 Identities=25% Similarity=0.322 Sum_probs=32.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD 59 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D 59 (272)
+|.|+|++||||||++.+|.+.+..+|+++.++..|
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~ 36 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIKHD 36 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 478999999999999999999998888888888765
No 230
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.66 E-value=8.2e-05 Score=64.38 Aligned_cols=41 Identities=22% Similarity=0.201 Sum_probs=31.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD 59 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D 59 (272)
..+..+|-|+|+||+||||+..+|.+.+...|.++.++.-|
T Consensus 26 ~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVD 66 (266)
T PF03308_consen 26 TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVD 66 (266)
T ss_dssp TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-
T ss_pred cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEEC
Confidence 45678999999999999999999999999888887766544
No 231
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.66 E-value=4.8e-05 Score=69.10 Aligned_cols=42 Identities=19% Similarity=0.174 Sum_probs=31.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHc----CCCEEEecCccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQ----GIPAYALDGDNL 61 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~----g~~~~~ld~D~i 61 (272)
.+.++++|.|+|||||||+|++|++.|..- .-+.+.+..+.+
T Consensus 76 ~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~ 121 (361)
T smart00763 76 ERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGE 121 (361)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCC
Confidence 356789999999999999999999999531 014556655443
No 232
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=97.66 E-value=6.9e-05 Score=69.25 Aligned_cols=43 Identities=21% Similarity=0.370 Sum_probs=34.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR 62 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~ 62 (272)
.+|.+|.|.|++||||||+++.|...+...|..+..+.-|.+.
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY 252 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY 252 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence 4789999999999999999999998885555556666666554
No 233
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.64 E-value=8.2e-05 Score=65.97 Aligned_cols=42 Identities=19% Similarity=0.324 Sum_probs=36.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-C-CCEEEecCcccc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQ-G-IPAYALDGDNLR 62 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~-g-~~~~~ld~D~i~ 62 (272)
++.+|.|+|++||||||++..|+..+... | ..+.+++.|..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 56799999999999999999999988765 4 788899988654
No 234
>PF13173 AAA_14: AAA domain
Probab=97.64 E-value=0.00069 Score=52.61 Aligned_cols=102 Identities=12% Similarity=0.068 Sum_probs=57.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHH-hCCCeEEEc
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFA-ECGFIALCS 100 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~-~~g~~VI~d 100 (272)
..+++|.|+.|+||||+++.+++.+. ...++.+++-|....... .... +.+...... .....++.|
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~~~~-----------~~~~-~~~~~~~~~~~~~~~i~iD 68 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRDRRL-----------ADPD-LLEYFLELIKPGKKYIFID 68 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHHHHH-----------hhhh-hHHHHHHhhccCCcEEEEe
Confidence 35899999999999999999999873 113566777654432100 0000 111111112 233456666
Q ss_pred CCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHh
Q psy17388 101 FVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQR 138 (272)
Q Consensus 101 ~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~R 138 (272)
-+-....+...++.+.+.. +-..|++..|......+
T Consensus 69 Eiq~~~~~~~~lk~l~d~~--~~~~ii~tgS~~~~l~~ 104 (128)
T PF13173_consen 69 EIQYLPDWEDALKFLVDNG--PNIKIILTGSSSSLLSK 104 (128)
T ss_pred hhhhhccHHHHHHHHHHhc--cCceEEEEccchHHHhh
Confidence 4443345556666666543 33567787776655433
No 235
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.61 E-value=0.001 Score=59.54 Aligned_cols=45 Identities=31% Similarity=0.557 Sum_probs=41.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
..+|.+|+|.|..|+||||....|+.++...|..+....+|.||.
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRA 180 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRA 180 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHH
Confidence 356999999999999999999999999999999999999998875
No 236
>KOG0744|consensus
Probab=97.61 E-value=0.00015 Score=64.42 Aligned_cols=25 Identities=36% Similarity=0.511 Sum_probs=23.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++|++.||||+||||++++|+++|
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkL 201 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKL 201 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhh
Confidence 4689999999999999999999999
No 237
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.60 E-value=0.0041 Score=59.07 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
+.|..++|+|+||+||||+|+.+++.+.
T Consensus 34 ~l~~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 34 SISHAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3456689999999999999999999984
No 238
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.59 E-value=0.0011 Score=57.30 Aligned_cols=41 Identities=22% Similarity=0.236 Sum_probs=33.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
.++.+++|.|+|||||||+|..+.......|.++.|+..+.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 36789999999999999999987765445677888888664
No 239
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.59 E-value=9.8e-05 Score=64.95 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=35.7
Q ss_pred cCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388 18 EGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD 59 (272)
Q Consensus 18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D 59 (272)
...++.+|-|+|+||+||||+..+|...|.+.|..+.++.-|
T Consensus 47 ~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVD 88 (323)
T COG1703 47 RTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVD 88 (323)
T ss_pred cCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEEC
Confidence 345677999999999999999999999999999877665544
No 240
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.59 E-value=0.00012 Score=58.02 Aligned_cols=37 Identities=19% Similarity=0.182 Sum_probs=29.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEE-EecCc
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAY-ALDGD 59 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~-~ld~D 59 (272)
++|.++|+.+|||||+++.|...|..+|+.+. +.+.|
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~ 38 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTD 38 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-S
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEcc
Confidence 37899999999999999999999998998876 55544
No 241
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.59 E-value=0.00011 Score=53.11 Aligned_cols=34 Identities=24% Similarity=0.476 Sum_probs=31.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD 57 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld 57 (272)
+|+++|..|+||||++..|+..|...|.++..+|
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 4788999999999999999999988898998888
No 242
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.58 E-value=0.00012 Score=65.39 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=36.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
.++.+|.|+|++||||||++..|...+...|..+.+++.|.
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~ 72 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDP 72 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 56889999999999999999999999988888888888773
No 243
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.58 E-value=9.7e-05 Score=58.77 Aligned_cols=37 Identities=24% Similarity=0.405 Sum_probs=31.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
+++|+|+||+||||++..++..+...|.++.+++.+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~ 37 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEE 37 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCc
Confidence 3789999999999999999999876777888887654
No 244
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.57 E-value=0.00022 Score=66.02 Aligned_cols=38 Identities=21% Similarity=0.389 Sum_probs=30.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
+|..|+|.|+||+||||+|++|++.+ +.+++.+|.-.+
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l---~~~fi~vdat~~ 83 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEATKF 83 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCeEEEeeccee
Confidence 46789999999999999999999999 555655654333
No 245
>PRK08116 hypothetical protein; Validated
Probab=97.56 E-value=0.00051 Score=60.48 Aligned_cols=41 Identities=34% Similarity=0.464 Sum_probs=34.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR 62 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~ 62 (272)
+.-++|.|.+|+|||++|.+++..+..+|.++.+++...+.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll 154 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLL 154 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 34589999999999999999999998778888888765543
No 246
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.56 E-value=0.0001 Score=62.68 Aligned_cols=37 Identities=30% Similarity=0.371 Sum_probs=27.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
....++|.||||.||||+|+.+++.+ |.++..+++..
T Consensus 49 ~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~~~sg~~ 85 (233)
T PF05496_consen 49 ALDHMLFYGPPGLGKTTLARIIANEL---GVNFKITSGPA 85 (233)
T ss_dssp ---EEEEESSTTSSHHHHHHHHHHHC---T--EEEEECCC
T ss_pred CcceEEEECCCccchhHHHHHHHhcc---CCCeEeccchh
Confidence 34579999999999999999999999 66666666543
No 247
>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).
Probab=97.56 E-value=0.0024 Score=52.24 Aligned_cols=110 Identities=18% Similarity=0.109 Sum_probs=58.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc-----------ccCCCCHHHHH---HHHHHH-----H
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN-----------ANLAFSEEDRN---ENVRRA-----A 84 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~-----------~~~~~~~~~~~---~~~~~i-----~ 84 (272)
+|+|+|-.+|||.|+|..|.++|......++-++. .+.+.+. .+-.|...-|. .|.+.. .
T Consensus 1 iilisGKrksGKD~~a~~l~~~l~~~~~~~vriS~-piK~~~A~~~gld~~~Ll~d~~YKE~~R~~mi~w~e~~r~~dp~ 79 (182)
T TIGR01223 1 VLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSG-PLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADPG 79 (182)
T ss_pred CEEEecCCCCChHHHHHHHHHhhccccceEEEecH-HHHHHHHHHhChhHHHhcCCcccchhhhHHHHHHHHHHHhhCcc
Confidence 58999999999999999999988321111344432 2221111 11122222121 121111 1
Q ss_pred HHHHHHH---hCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhh
Q psy17388 85 ECAKMFA---ECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRD 139 (272)
Q Consensus 85 ~~~~~~~---~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl 139 (272)
.+++... ....+||.|.-.. ...+.++... |..+++|.+.++.+++.+|.
T Consensus 80 ~F~r~~~~~~~~~v~iIsD~Rr~--~dv~~f~~~~---g~~~~~VRV~AseetR~~Rg 132 (182)
T TIGR01223 80 FFCRKIVEGISQPIWLVSDTRRV--SDIQWFREAY---GAVTQTVRVVALEQSRQQRG 132 (182)
T ss_pred HHHHHHHhccCCCEEEEeCCCcc--cHHHHHHHHc---CCceEEEEEecCHHHHHHHH
Confidence 1222222 2233444443222 2334444433 55789999999999999996
No 248
>PRK05642 DNA replication initiation factor; Validated
Probab=97.55 E-value=0.00038 Score=59.99 Aligned_cols=41 Identities=20% Similarity=0.184 Sum_probs=34.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR 62 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~ 62 (272)
...++|.|++|+|||+++++++..+..+|..+.|++.+.+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~ 85 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELL 85 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHH
Confidence 35789999999999999999998887778888898876653
No 249
>COG4240 Predicted kinase [General function prediction only]
Probab=97.54 E-value=0.00012 Score=62.03 Aligned_cols=44 Identities=27% Similarity=0.317 Sum_probs=38.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcC-CCEEEecCccccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQG-IPAYALDGDNLRN 63 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g-~~~~~ld~D~i~~ 63 (272)
.+|.++.|+|+.||||||++..|...|.++| ..+..++-|++..
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYl 92 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYL 92 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhc
Confidence 4689999999999999999999999998888 5788888888754
No 250
>KOG1532|consensus
Probab=97.54 E-value=0.00037 Score=60.61 Aligned_cols=41 Identities=32% Similarity=0.546 Sum_probs=35.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
++|.+|++.|+.||||||+.+.|-..+.+.+.+-+.++-|-
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDP 57 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDP 57 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCH
Confidence 67889999999999999999999999988777777777663
No 251
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.54 E-value=0.00016 Score=66.24 Aligned_cols=44 Identities=20% Similarity=0.284 Sum_probs=39.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
.++.+|+|+|+.|+||||++..|+..+..+|.++.+++.|.++.
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS 247 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence 45789999999999999999999998877888899999998865
No 252
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=97.54 E-value=0.0015 Score=58.27 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=29.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGI 65 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l 65 (272)
.+.+|+|+|+.|||||.+|-.|+++. | .++..|+-.+.+++
T Consensus 3 ~~~ii~I~GpTasGKS~LAl~LA~~~---~-eIIsaDS~QvYr~l 43 (300)
T PRK14729 3 ENKIVFIFGPTAVGKSNILFHFPKGK---A-EIINVDSIQVYKEF 43 (300)
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC---C-cEEeccHHHHHCCC
Confidence 34589999999999999999999983 3 44444443444444
No 253
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.53 E-value=0.00076 Score=59.09 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=34.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCEEEecCcc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQ-GIPAYALDGDN 60 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~-g~~~~~ld~D~ 60 (272)
.++.+++|.|+||+||||++.+++..+... |.++.|++.+.
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~ 69 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE 69 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc
Confidence 467899999999999999999998887555 88888888653
No 254
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.53 E-value=8.9e-05 Score=58.19 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=25.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.+|+|.|.+||||||+++.+++.+
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 567899999999999999999999998
No 255
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.52 E-value=0.00014 Score=67.39 Aligned_cols=43 Identities=23% Similarity=0.345 Sum_probs=36.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH-HHcCCCEEEecCccccc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYL-IAQGIPAYALDGDNLRN 63 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L-~~~g~~~~~ld~D~i~~ 63 (272)
++.+|+|+|++||||||++..|+..+ ...|..+.+++.|..+.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~ 265 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI 265 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhh
Confidence 56789999999999999999999765 34577788999998665
No 256
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=97.52 E-value=0.0014 Score=60.08 Aligned_cols=41 Identities=20% Similarity=0.298 Sum_probs=37.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
.+...++++|+..|||||++..|+.++-++|+++.++|.|.
T Consensus 71 ~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDv 111 (398)
T COG1341 71 GKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADV 111 (398)
T ss_pred cCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCC
Confidence 56678999999999999999999999998899999999884
No 257
>PRK12377 putative replication protein; Provisional
Probab=97.51 E-value=0.00093 Score=58.11 Aligned_cols=42 Identities=21% Similarity=0.388 Sum_probs=35.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
...++|.|+||+|||++|.+++..+...|+.+.++....+..
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~ 142 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMS 142 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHH
Confidence 357899999999999999999999988888888887665544
No 258
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.51 E-value=0.0027 Score=57.21 Aligned_cols=37 Identities=22% Similarity=0.185 Sum_probs=27.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcC--CCEEEecCc
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQG--IPAYALDGD 59 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g--~~~~~ld~D 59 (272)
..++|.|+||+||||+|+++++.+...+ .++.+++..
T Consensus 37 ~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~ 75 (337)
T PRK12402 37 PHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVA 75 (337)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechh
Confidence 3688999999999999999999885332 234455543
No 259
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.50 E-value=8.7e-05 Score=64.17 Aligned_cols=34 Identities=26% Similarity=0.448 Sum_probs=26.5
Q ss_pred EEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 27 FPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 27 l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
+.|++||||||+++.+.+.+...|.++..++-|-
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDP 34 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDP 34 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcch
Confidence 5899999999999999999988888888877663
No 260
>KOG0733|consensus
Probab=97.49 E-value=0.0006 Score=65.23 Aligned_cols=43 Identities=28% Similarity=0.523 Sum_probs=35.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGI 65 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l 65 (272)
.+|+=|+|.||||+|||.+|++++..+ |.+++-+..-.+..++
T Consensus 221 ~PprGvLlHGPPGCGKT~lA~AiAgel---~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 221 RPPRGVLLHGPPGCGKTSLANAIAGEL---GVPFLSISAPEIVSGV 263 (802)
T ss_pred CCCCceeeeCCCCccHHHHHHHHhhhc---CCceEeecchhhhccc
Confidence 466679999999999999999999999 7787777765554444
No 261
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=0.0026 Score=56.79 Aligned_cols=43 Identities=21% Similarity=0.404 Sum_probs=32.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN 66 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~ 66 (272)
++.+|+|+||.+||||-+|-.|++++ |..++.+|+-.+.+++.
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~---~~eIIs~DSmQvYr~md 44 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRL---GGEIISLDSMQVYRGLD 44 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHc---CCcEEecchhhhcCCCc
Confidence 46799999999999999999999999 44555555444455443
No 262
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.49 E-value=0.00027 Score=57.43 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=24.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
++|..|.|+||+||||||+-++++...
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 678899999999999999999999765
No 263
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.47 E-value=0.0016 Score=56.75 Aligned_cols=41 Identities=20% Similarity=0.271 Sum_probs=31.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
.++.++.|.|-|||||||+||.|.......+ +.+++++.++
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~-G~i~f~g~~i 77 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTS-GEILFEGKDI 77 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCCC-ceEEEcCcch
Confidence 4788999999999999999999998775322 3455665543
No 264
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.47 E-value=0.002 Score=55.04 Aligned_cols=40 Identities=18% Similarity=0.284 Sum_probs=32.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD 59 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D 59 (272)
.++.+++|.|.||+||||++..++......|.++.+++.+
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e 57 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE 57 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 4678999999999999999998876544457778888764
No 265
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.47 E-value=0.00046 Score=62.92 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=36.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNG 64 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~ 64 (272)
..|..+.|.|+||+|||.+|+++++.+ |.+++.++..++...
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el---g~~~i~vsa~eL~sk 187 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM---GIEPIVMSAGELESE 187 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc---CCCeEEEEHHHhhcC
Confidence 578899999999999999999999999 778888887766543
No 266
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.47 E-value=0.00016 Score=56.84 Aligned_cols=30 Identities=30% Similarity=0.640 Sum_probs=25.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388 25 LLFPGLSGAGKTSISFQIESYLIAQGIPAYALD 57 (272)
Q Consensus 25 I~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld 57 (272)
|+|.|+||+|||++++.+++.+ +.++..+.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~~~~~~i~ 31 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---GRPVIRIN 31 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---TCEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh---hcceEEEE
Confidence 7899999999999999999999 55554443
No 267
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.46 E-value=0.0084 Score=52.23 Aligned_cols=27 Identities=30% Similarity=0.321 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
.+.+++|+|++|+||||+++.+...+.
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 345899999999999999999999874
No 268
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.46 E-value=0.00023 Score=57.65 Aligned_cols=36 Identities=28% Similarity=0.398 Sum_probs=31.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG 58 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~ 58 (272)
.+|.|+|.+||||||+++.|...|...|+++..+..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~ 37 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKH 37 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 479999999999999999999999878877665543
No 269
>PF13245 AAA_19: Part of AAA domain
Probab=97.46 E-value=0.00028 Score=49.85 Aligned_cols=26 Identities=23% Similarity=0.241 Sum_probs=18.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
...+.++.|+|||||||++..+...+
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34578889999999995555555444
No 270
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.46 E-value=0.00016 Score=57.81 Aligned_cols=36 Identities=28% Similarity=0.334 Sum_probs=32.7
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 25 LLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 25 I~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
|.++|.+||||||++..++..+...|.++.+++.|.
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~ 37 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDP 37 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 788999999999999999999988888888888774
No 271
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.45 E-value=0.012 Score=55.85 Aligned_cols=28 Identities=29% Similarity=0.374 Sum_probs=24.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
+-+..++|+|++|+||||+|+.+++.+.
T Consensus 38 ri~ha~Lf~GP~GtGKTTlAriLAk~Ln 65 (484)
T PRK14956 38 KIGHAYIFFGPRGVGKTTIARILAKRLN 65 (484)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3456789999999999999999999984
No 272
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.44 E-value=0.00011 Score=60.59 Aligned_cols=47 Identities=21% Similarity=0.390 Sum_probs=36.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN 66 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~ 66 (272)
.++..++|.|++|+|||++|.+++..+-.+|+.+.|++...+...+.
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~ 91 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELK 91 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccc
Confidence 35678999999999999999999999888999999998776655443
No 273
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.44 E-value=0.00021 Score=60.99 Aligned_cols=42 Identities=17% Similarity=0.168 Sum_probs=34.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
..+..++|+|++|+|||++|++++..+...|.++.+++...+
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 345679999999999999999999988777778888876543
No 274
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.44 E-value=0.0044 Score=56.96 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
+-+..++|+|++|+||||+|+++++.+.
T Consensus 36 ~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 36 RIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred CCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 4466789999999999999999999983
No 275
>PRK05973 replicative DNA helicase; Provisional
Probab=97.44 E-value=0.00024 Score=61.24 Aligned_cols=40 Identities=15% Similarity=0.224 Sum_probs=34.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD 59 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D 59 (272)
.++.+++|.|.||+||||+|-.++......|.++.|++.+
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 4678999999999999999999988766668888888755
No 276
>PRK04195 replication factor C large subunit; Provisional
Probab=97.43 E-value=0.001 Score=63.44 Aligned_cols=38 Identities=29% Similarity=0.497 Sum_probs=31.5
Q ss_pred cCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388 18 EGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG 58 (272)
Q Consensus 18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~ 58 (272)
.+.++..++|.|+||+||||+|++|++.+ |+.+..++.
T Consensus 35 ~g~~~~~lLL~GppG~GKTtla~ala~el---~~~~ielna 72 (482)
T PRK04195 35 KGKPKKALLLYGPPGVGKTSLAHALANDY---GWEVIELNA 72 (482)
T ss_pred cCCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEEcc
Confidence 34457889999999999999999999998 666666654
No 277
>PRK04328 hypothetical protein; Provisional
Probab=97.43 E-value=0.002 Score=56.08 Aligned_cols=40 Identities=23% Similarity=0.240 Sum_probs=33.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
++.+++|.|+||||||++|..+...-...|.++.|++.+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee 61 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE 61 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC
Confidence 6789999999999999999997766445688888888654
No 278
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.41 E-value=0.0014 Score=55.90 Aligned_cols=40 Identities=20% Similarity=0.303 Sum_probs=32.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCEEEecCcc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQ-GIPAYALDGDN 60 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~-g~~~~~ld~D~ 60 (272)
++.++++.|+||||||+++.+++..-..+ |.++.|+..+.
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee 58 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE 58 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC
Confidence 67899999999999999999977655455 88899988764
No 279
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=97.41 E-value=0.00024 Score=57.59 Aligned_cols=36 Identities=22% Similarity=0.226 Sum_probs=32.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD 57 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld 57 (272)
++++-|+|.++|||||+...|.+.|.++|+.+..+-
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iK 37 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVK 37 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEE
Confidence 578999999999999999999999999998877653
No 280
>PLN03025 replication factor C subunit; Provisional
Probab=97.41 E-value=0.0042 Score=56.00 Aligned_cols=35 Identities=23% Similarity=0.352 Sum_probs=26.6
Q ss_pred hhhhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 13 LRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 13 ~r~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
++....+.+...++|.|+||+||||+|+++++.+.
T Consensus 25 L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 25 LQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred HHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 34333334434578999999999999999999984
No 281
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.41 E-value=0.004 Score=53.72 Aligned_cols=48 Identities=23% Similarity=0.362 Sum_probs=39.7
Q ss_pred hhhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 14 RDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 14 r~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
+..+.+.++..++|.|..|+|||++.++|...+...|..++-++.+.+
T Consensus 44 ~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L 91 (249)
T PF05673_consen 44 EQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL 91 (249)
T ss_pred HHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh
Confidence 345567788899999999999999999999999888877776665544
No 282
>PRK09183 transposase/IS protein; Provisional
Probab=97.40 E-value=0.00024 Score=62.23 Aligned_cols=41 Identities=24% Similarity=0.351 Sum_probs=33.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
++..++|.|++|+||||++.+|+..+...|+.+.+++...+
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l 141 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADL 141 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHH
Confidence 56678999999999999999999887677888887764433
No 283
>KOG0780|consensus
Probab=97.39 E-value=0.0014 Score=59.71 Aligned_cols=47 Identities=26% Similarity=0.451 Sum_probs=43.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccc
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGI 65 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l 65 (272)
..+|.+|.|.|+.||||||.+-.||-.+..+|+.+..+-.|.+|.+-
T Consensus 98 K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagA 144 (483)
T KOG0780|consen 98 KGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGA 144 (483)
T ss_pred cCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccch
Confidence 35789999999999999999999999999999999999999998754
No 284
>PRK06893 DNA replication initiation factor; Validated
Probab=97.39 E-value=0.00031 Score=60.33 Aligned_cols=38 Identities=11% Similarity=0.056 Sum_probs=32.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD 59 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D 59 (272)
...++|.|+||+|||+++++++..+..++.++.|++..
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 34789999999999999999999987677777777653
No 285
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.38 E-value=0.0002 Score=55.44 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=24.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.+|+|.|..||||||++|.+++.|
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 567899999999999999999999999
No 286
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.37 E-value=0.016 Score=55.88 Aligned_cols=28 Identities=29% Similarity=0.462 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
+.+..++|+|++|+||||+|+.+++.|.
T Consensus 36 rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 36 KVHHAYLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4455689999999999999999999984
No 287
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=97.37 E-value=0.00029 Score=64.81 Aligned_cols=39 Identities=28% Similarity=0.285 Sum_probs=34.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD 59 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D 59 (272)
++.+|.|+|.+||||||+...|...|..+|+.+.++-.|
T Consensus 204 ~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~ 242 (366)
T PRK14489 204 APPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKHS 242 (366)
T ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEEC
Confidence 467999999999999999999999999888888766543
No 288
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.37 E-value=0.0046 Score=55.19 Aligned_cols=35 Identities=26% Similarity=0.478 Sum_probs=26.2
Q ss_pred hhhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy17388 14 RDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIA 48 (272)
Q Consensus 14 r~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~ 48 (272)
+..........++|+|++|+||||+++.+++.+..
T Consensus 30 ~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~ 64 (319)
T PRK00440 30 KSYVKEKNMPHLLFAGPPGTGKTTAALALARELYG 64 (319)
T ss_pred HHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcC
Confidence 33333333335799999999999999999999853
No 289
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.36 E-value=0.00025 Score=63.00 Aligned_cols=41 Identities=24% Similarity=0.487 Sum_probs=30.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCC----CEEEecCccc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGI----PAYALDGDNL 61 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~----~~~~ld~D~i 61 (272)
++..++|.|+||+||||+|+++++.+...|. +++.++.+.+
T Consensus 57 ~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 3457999999999999999999998865443 3555554433
No 290
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=97.35 E-value=0.00039 Score=62.91 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=38.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR 62 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~ 62 (272)
.+.++|.++|..|+||||++..|+..|..+|.++..+|.|.-.
T Consensus 29 ~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~~ 71 (329)
T cd02033 29 KKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKS 71 (329)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeecc
Confidence 5678999999999999999999999999899999999988543
No 291
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=97.35 E-value=0.0039 Score=59.22 Aligned_cols=112 Identities=13% Similarity=0.079 Sum_probs=73.1
Q ss_pred cCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeE
Q psy17388 18 EGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIA 97 (272)
Q Consensus 18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~V 97 (272)
....|.+|+|.|..+|||....+.|.+.+..+|+.+.-+.... +.+....-+..+.+.+-..|.+.
T Consensus 295 ~~~~~vlivfeG~DaAGKgg~I~rl~~~ldPrg~~v~~~~~Pt--------------~~E~~~~~lwRf~~~lP~~G~i~ 360 (493)
T TIGR03708 295 FRKRSLVLVFEGWDAAGKGGAIRRVTEALDARQYRVVPIAAPT--------------DEEKAQHYLWRFWRHIPRRGRIT 360 (493)
T ss_pred hCCCCEEEEEEcccCCCCcHHHHHHHhhcCCCeeEEEeCCCcC--------------HHHHcCcHHHHHHHhCCCCCeEE
Confidence 3567999999999999999999999999976666554332211 11111112344455666677777
Q ss_pred EEcCC----------C---CcHHHHH------HHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh
Q psy17388 98 LCSFV----------S---PTAAARD------RAREIHRNANLEFFEVFVNTPVEICEQRDVKGH 143 (272)
Q Consensus 98 I~d~~----------~---~~~~~r~------~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~ 143 (272)
|.|.. . ....+.. .+...+...|.-++.+||+.|.++..+|+..|.
T Consensus 361 iFdRSwY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ivKf~LhIsk~EQ~~R~~~r~ 425 (493)
T TIGR03708 361 IFDRSWYGRVLVERVEGFCSEAEWLRAYGEINDFEEQLTEHGAIVVKFWLHIDKEEQLRRFEERE 425 (493)
T ss_pred EEcCCccCCcceeeecCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEcCHHHHHHHHHHHh
Confidence 75521 1 1112222 223345567999999999999999999997653
No 292
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=97.35 E-value=0.0003 Score=62.10 Aligned_cols=37 Identities=19% Similarity=0.239 Sum_probs=32.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
++|.|+|.+||||||++..|...|..+| .+.+++.|-
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~ 38 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKHMD 38 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEEcC
Confidence 4799999999999999999999999888 788777653
No 293
>PRK09087 hypothetical protein; Validated
Probab=97.35 E-value=0.00094 Score=57.28 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=27.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
...++|.|++||||||+++++++.. .+.|++.+.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~-----~~~~i~~~~ 77 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS-----DALLIHPNE 77 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc-----CCEEecHHH
Confidence 3468999999999999999999876 566777643
No 294
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.35 E-value=0.015 Score=57.05 Aligned_cols=29 Identities=34% Similarity=0.527 Sum_probs=25.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
++.+..++|+|++|+||||+|+.+++.+.
T Consensus 34 grl~HAyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 34 GRLHHAYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34467889999999999999999999993
No 295
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.35 E-value=0.011 Score=56.73 Aligned_cols=31 Identities=29% Similarity=0.410 Sum_probs=26.3
Q ss_pred cCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy17388 18 EGQSNICLLFPGLSGAGKTSISFQIESYLIA 48 (272)
Q Consensus 18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~ 48 (272)
.+..|..++|+|+||+||||+|+++++.+..
T Consensus 32 ~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 32 QGRLGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 3345667899999999999999999999953
No 296
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.33 E-value=0.00033 Score=57.58 Aligned_cols=37 Identities=27% Similarity=0.387 Sum_probs=31.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
+++|.|+||+|||+++..++......|.++.|++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~ 37 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEE 37 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 3789999999999999999887766788888888653
No 297
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.33 E-value=0.0023 Score=57.35 Aligned_cols=40 Identities=28% Similarity=0.263 Sum_probs=31.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH------cCCCEEEecCcc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIA------QGIPAYALDGDN 60 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~------~g~~~~~ld~D~ 60 (272)
++.++.|+|+|||||||++-.++..... .+..++|+|++.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 6789999999999999999999876421 123788999875
No 298
>PRK08181 transposase; Validated
Probab=97.33 E-value=0.00018 Score=63.37 Aligned_cols=43 Identities=26% Similarity=0.311 Sum_probs=36.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
++..++|.|++|+|||++|.+++..+..+|+.+.|++...+..
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~ 147 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQ 147 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHH
Confidence 4567999999999999999999998877888888887655443
No 299
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.32 E-value=0.018 Score=56.17 Aligned_cols=29 Identities=38% Similarity=0.479 Sum_probs=25.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
++-+..++|+|++|+||||+|+.+++.+.
T Consensus 32 ~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 32 GRINHAYLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34566789999999999999999999984
No 300
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.32 E-value=0.00019 Score=60.51 Aligned_cols=41 Identities=20% Similarity=0.378 Sum_probs=30.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
.+|.+++|+|+|||||||+-|.|-. |..-......+|++.+
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~-LE~~~~G~I~i~g~~~ 66 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNG-LEEPDSGSITVDGEDV 66 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC-CcCCCCceEEECCEec
Confidence 5788999999999999999999875 3332334566776433
No 301
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.31 E-value=0.00024 Score=62.32 Aligned_cols=34 Identities=21% Similarity=0.441 Sum_probs=28.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG 58 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~ 58 (272)
+..|+|.|+||+|||++|++|++.+ |.++..+..
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~l---g~~~~~i~~ 54 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKR---DRPVMLING 54 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh---CCCEEEEeC
Confidence 4567899999999999999999987 677776654
No 302
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.31 E-value=0.004 Score=55.82 Aligned_cols=38 Identities=24% Similarity=0.379 Sum_probs=29.5
Q ss_pred cCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388 18 EGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG 58 (272)
Q Consensus 18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~ 58 (272)
.++.|.++++.|++|+||||+++++++.+ +.++.+++.
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~~l~~~~---~~~~~~i~~ 76 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAKALCNEV---GAEVLFVNG 76 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHHHHHHHh---CccceEecc
Confidence 34456788889999999999999999987 445555543
No 303
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.31 E-value=0.00026 Score=57.92 Aligned_cols=30 Identities=27% Similarity=0.520 Sum_probs=24.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCE
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPA 53 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~ 53 (272)
.|+|+|.||+||||+.+.+.+.+...|.++
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v 30 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPV 30 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGE
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCcc
Confidence 389999999999999999999997655543
No 304
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.30 E-value=0.014 Score=57.99 Aligned_cols=28 Identities=32% Similarity=0.425 Sum_probs=24.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
+-+..++|+|++|+||||+++.|++.|.
T Consensus 36 RL~HAyLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 36 RLHHAYLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3466788999999999999999999994
No 305
>PRK06526 transposase; Provisional
Probab=97.30 E-value=0.00016 Score=63.20 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=33.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
.+..++|.|+||+|||++|.+|+..+...|+.+.+.....+
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l 137 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQW 137 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHH
Confidence 45679999999999999999999988777887766554433
No 306
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.29 E-value=0.00029 Score=57.58 Aligned_cols=40 Identities=30% Similarity=0.349 Sum_probs=24.7
Q ss_pred cCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388 18 EGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD 57 (272)
Q Consensus 18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld 57 (272)
.+..+.+++|.|.+|+||||+.+++.+.+...+.-+..++
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~ 59 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISIN 59 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEE
T ss_pred HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3456789999999999999999999999876532244443
No 307
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.29 E-value=0.00026 Score=62.01 Aligned_cols=28 Identities=21% Similarity=0.449 Sum_probs=24.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIA 48 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~ 48 (272)
.+..++|.|+||+||||+|+.+++.+..
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~ 68 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKE 68 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3467899999999999999999998853
No 308
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.29 E-value=0.00041 Score=60.75 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=34.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD 59 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D 59 (272)
++.+++|+|.||+||||+|.+++......|.++.|++.+
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 678999999999999999999987765668888888865
No 309
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.29 E-value=0.00027 Score=54.53 Aligned_cols=29 Identities=34% Similarity=0.452 Sum_probs=21.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIA 48 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~ 48 (272)
+.+.+++|.|++|+||||+++.+.+.+..
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~ 30 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNA 30 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHH
Confidence 34578999999999999999999998853
No 310
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.29 E-value=0.011 Score=57.87 Aligned_cols=30 Identities=30% Similarity=0.428 Sum_probs=26.0
Q ss_pred cCCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 18 EGQSNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
.++.+..++|+|++|+||||+|+.|++.|.
T Consensus 34 ~gRLpHA~LFtGP~GvGKTTLAriLAkaLn 63 (700)
T PRK12323 34 QQRLHHAYLFTGTRGVGKTTLSRILAKSLN 63 (700)
T ss_pred hCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344567789999999999999999999994
No 311
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.29 E-value=0.001 Score=63.39 Aligned_cols=40 Identities=28% Similarity=0.362 Sum_probs=32.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR 62 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~ 62 (272)
..|+-|+|.|+||+|||++|++++..+ |.+++.++...+.
T Consensus 257 ~~pkGILL~GPpGTGKTllAkaiA~e~---~~~~~~l~~~~l~ 296 (489)
T CHL00195 257 PTPRGLLLVGIQGTGKSLTAKAIANDW---QLPLLRLDVGKLF 296 (489)
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh---CCCEEEEEhHHhc
Confidence 456779999999999999999999998 6677777765443
No 312
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.29 E-value=0.00018 Score=58.28 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHH
Q psy17388 25 LLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 25 I~l~G~~GsGKSTlAr~La~~ 45 (272)
|+|+|.+|+||||+++.|++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 899999999999999999987
No 313
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.28 E-value=0.0056 Score=53.08 Aligned_cols=41 Identities=24% Similarity=0.380 Sum_probs=30.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
..+.++++.|+|||||||+-+++-+.+... -.-+++++..+
T Consensus 25 ~~gef~vliGpSGsGKTTtLkMINrLiept-~G~I~i~g~~i 65 (309)
T COG1125 25 EEGEFLVLIGPSGSGKTTTLKMINRLIEPT-SGEILIDGEDI 65 (309)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhcccCCC-CceEEECCeec
Confidence 468899999999999999999998776432 13455665443
No 314
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.28 E-value=0.00036 Score=61.80 Aligned_cols=46 Identities=22% Similarity=0.341 Sum_probs=35.2
Q ss_pred hhhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 14 RDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 14 r~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
|.........+|.|+|+|||||||+...+...|... .++.++.+|.
T Consensus 96 r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~-~~~~VI~gD~ 141 (290)
T PRK10463 96 RARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDS-VPCAVIEGDQ 141 (290)
T ss_pred HHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccC-CCEEEECCCc
Confidence 344444667899999999999999999999988432 3566777663
No 315
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.28 E-value=0.0012 Score=57.71 Aligned_cols=43 Identities=21% Similarity=0.273 Sum_probs=37.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR 62 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~ 62 (272)
.++.+++++|.||||||+++.+........|.++.|+..+.-.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~ 63 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESP 63 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCH
Confidence 4678999999999999999999999888889999999877543
No 316
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.28 E-value=0.005 Score=52.00 Aligned_cols=40 Identities=25% Similarity=0.402 Sum_probs=28.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccc
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGI 65 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l 65 (272)
.+++|.|+.|+|||.+|-+|++++ |.+++.+|.=.....+
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~---g~pvI~~Driq~y~~l 41 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKT---GAPVISLDRIQCYPEL 41 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH-----EEEEE-SGGG-GGG
T ss_pred cEEEEECCCCCChhHHHHHHHHHh---CCCEEEecceeccccc
Confidence 578999999999999999999999 6677777764444433
No 317
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.28 E-value=0.00053 Score=58.95 Aligned_cols=41 Identities=15% Similarity=0.214 Sum_probs=33.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
.++.++.+.|++||||||+|..+...+...|.++.|++.+.
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~ 62 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQL 62 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 45779999999999999998777666655677888887654
No 318
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.28 E-value=0.015 Score=55.44 Aligned_cols=30 Identities=30% Similarity=0.306 Sum_probs=25.8
Q ss_pred cCCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 18 EGQSNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
.++-+.-++|+|++|+||||+|+.+++.+.
T Consensus 31 ~~ri~ha~Lf~Gp~G~GKTT~ArilAk~Ln 60 (491)
T PRK14964 31 LNKIPQSILLVGASGVGKTTCARIISLCLN 60 (491)
T ss_pred cCCCCceEEEECCCCccHHHHHHHHHHHHc
Confidence 344566799999999999999999999884
No 319
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.28 E-value=0.00043 Score=63.94 Aligned_cols=43 Identities=19% Similarity=0.260 Sum_probs=36.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH----cCCCEEEecCccccc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIA----QGIPAYALDGDNLRN 63 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~----~g~~~~~ld~D~i~~ 63 (272)
+|.+|++.|+.|+||||++..|+..+.. .|..+.+++.|.++.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~ 219 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRI 219 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccH
Confidence 4789999999999999999999988753 366788888887653
No 320
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.27 E-value=0.0021 Score=58.26 Aligned_cols=42 Identities=36% Similarity=0.401 Sum_probs=36.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
...++|.|++|+|||+++.+++..+-.+|+.+.|++...+..
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~ 224 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIE 224 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHH
Confidence 367999999999999999999999988898999988766544
No 321
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.27 E-value=0.012 Score=59.61 Aligned_cols=30 Identities=37% Similarity=0.465 Sum_probs=25.6
Q ss_pred cCCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 18 EGQSNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
.++-+..++|.|++|+||||+|+.|++.|.
T Consensus 33 ~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 33 SGRINHAYLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred hCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 334455689999999999999999999994
No 322
>PTZ00202 tuzin; Provisional
Probab=97.26 E-value=0.001 Score=62.00 Aligned_cols=109 Identities=16% Similarity=0.189 Sum_probs=60.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc---cccccccCCCCHH-HHHHHHHHHHHHHHHHHhC-CC
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL---RNGINANLAFSEE-DRNENVRRAAECAKMFAEC-GF 95 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i---~~~l~~~~~~~~~-~~~~~~~~i~~~~~~~~~~-g~ 95 (272)
.|.+++|+|++|+||||+++.+...+ +...+++|.... ...+...++..+. .....++.+.+.+...... |.
T Consensus 285 ~privvLtG~~G~GKTTLlR~~~~~l---~~~qL~vNprg~eElLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~Gr 361 (550)
T PTZ00202 285 HPRIVVFTGFRGCGKSSLCRSAVRKE---GMPAVFVDVRGTEDTLRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGE 361 (550)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhcC---CceEEEECCCCHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCC
Confidence 45699999999999999999999887 445666665422 1222223332221 1234455665555444443 64
Q ss_pred e--EEE---cCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHH
Q psy17388 96 I--ALC---SFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEIC 135 (272)
Q Consensus 96 ~--VI~---d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~ 135 (272)
. +|+ .+.+-.+.+.+.+ .++-+. ....|.+.+|.|-+
T Consensus 362 tPVLII~lreg~~l~rvyne~v-~la~dr--r~ch~v~evplesl 403 (550)
T PTZ00202 362 TPLLVLKLREGSSLQRVYNEVV-ALACDR--RLCHVVIEVPLESL 403 (550)
T ss_pred CEEEEEEecCCCcHHHHHHHHH-HHHccc--hhheeeeeehHhhc
Confidence 2 222 2333233444443 333222 34567778877764
No 323
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.24 E-value=0.00043 Score=64.84 Aligned_cols=43 Identities=16% Similarity=0.128 Sum_probs=36.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCCCEEEecCccccc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLI--AQGIPAYALDGDNLRN 63 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~--~~g~~~~~ld~D~i~~ 63 (272)
++.+|+|.|++|+||||++..|+..+. ..|..+.+++.|..+.
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~ 264 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRI 264 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHH
Confidence 356899999999999999999998886 3467899999998653
No 324
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.24 E-value=0.0005 Score=63.13 Aligned_cols=42 Identities=21% Similarity=0.295 Sum_probs=34.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH-cC-CCEEEecCcccc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIA-QG-IPAYALDGDNLR 62 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~-~g-~~~~~ld~D~i~ 62 (272)
++.+|+|.|++|+||||++..|+..+.. .| .++.++..|.++
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R 179 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR 179 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccc
Confidence 4779999999999999999999987643 35 467788888775
No 325
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.24 E-value=0.0018 Score=55.44 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=32.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHc------CCCEEEecCcc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQ------GIPAYALDGDN 60 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~------g~~~~~ld~D~ 60 (272)
.++.++.|.|+|||||||++..++...... +..+.|++.+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 367899999999999999999998653211 25778888764
No 326
>PF05729 NACHT: NACHT domain
Probab=97.23 E-value=0.00029 Score=56.31 Aligned_cols=28 Identities=21% Similarity=0.375 Sum_probs=24.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcC
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQG 50 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g 50 (272)
++++|.|.+|+||||+++.++..+...+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 4789999999999999999999886543
No 327
>KOG1533|consensus
Probab=97.23 E-value=0.00027 Score=60.08 Aligned_cols=36 Identities=25% Similarity=0.391 Sum_probs=31.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 25 LLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 25 I~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
-+++|||||||||.+.-..+-+.+.|.++..++-|-
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDP 40 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDP 40 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCC
Confidence 478999999999999999999998898888777653
No 328
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=97.23 E-value=0.0029 Score=55.22 Aligned_cols=40 Identities=20% Similarity=0.299 Sum_probs=33.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCEEEecCc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQ-GIPAYALDGD 59 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~-g~~~~~ld~D 59 (272)
.++.+++|.|.||+||||++..++..+... |.++.|++.+
T Consensus 17 ~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlE 57 (259)
T PF03796_consen 17 RPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLE 57 (259)
T ss_dssp -TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCC
Confidence 467899999999999999999999988776 5889898875
No 329
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.23 E-value=0.00037 Score=62.69 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=28.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD 57 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld 57 (272)
+..|+|.|+||+||||+++.|++.+ |+++..+.
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l---~~~~~rV~ 96 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARL---NWPCVRVN 96 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHH---CCCeEEEE
Confidence 4569999999999999999999999 66665443
No 330
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.23 E-value=0.00026 Score=53.36 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=21.6
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 25 LLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 25 I~l~G~~GsGKSTlAr~La~~L~ 47 (272)
|+|.|+||+|||++++.|++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999885
No 331
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.21 E-value=0.021 Score=54.67 Aligned_cols=30 Identities=23% Similarity=0.274 Sum_probs=26.0
Q ss_pred cCCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 18 EGQSNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
.++.+..++|+|++|+||||+|+.+++.+.
T Consensus 39 ~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln 68 (507)
T PRK06645 39 NDRLAGGYLLTGIRGVGKTTSARIIAKAVN 68 (507)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 334466899999999999999999999994
No 332
>PRK06921 hypothetical protein; Provisional
Probab=97.21 E-value=0.0012 Score=57.98 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=33.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCEEEecCc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQ-GIPAYALDGD 59 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~-g~~~~~ld~D 59 (272)
.+..++|.|++|+|||+++.+++..+..+ |+.+.|+...
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~ 155 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFV 155 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHH
Confidence 45679999999999999999999998776 8888887753
No 333
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.20 E-value=0.00037 Score=64.67 Aligned_cols=39 Identities=21% Similarity=0.260 Sum_probs=31.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
.+|.-|+|.|+||+|||++|++++..+ +.+++.++...+
T Consensus 163 ~~p~gvLL~GppGtGKT~lAkaia~~~---~~~~i~v~~~~l 201 (389)
T PRK03992 163 EPPKGVLLYGPPGTGKTLLAKAVAHET---NATFIRVVGSEL 201 (389)
T ss_pred CCCCceEEECCCCCChHHHHHHHHHHh---CCCEEEeehHHH
Confidence 456779999999999999999999998 556666654433
No 334
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=97.20 E-value=0.0006 Score=58.51 Aligned_cols=35 Identities=20% Similarity=0.215 Sum_probs=31.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD 57 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld 57 (272)
.+|.|+|.+||||||++..|.+.|..+|+++.++.
T Consensus 2 ~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK 36 (229)
T PRK14494 2 RAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAK 36 (229)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEE
Confidence 47999999999999999999999988888888775
No 335
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=97.19 E-value=0.0033 Score=59.06 Aligned_cols=40 Identities=18% Similarity=0.280 Sum_probs=33.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHH-cCCCEEEecCc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIA-QGIPAYALDGD 59 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~-~g~~~~~ld~D 59 (272)
+++.+++|.|.||+||||++..++..... .|.++.+++.+
T Consensus 193 ~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlE 233 (434)
T TIGR00665 193 QPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLE 233 (434)
T ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCc
Confidence 46789999999999999999999987653 57788888765
No 336
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.19 E-value=0.00097 Score=64.08 Aligned_cols=42 Identities=26% Similarity=0.461 Sum_probs=33.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
.+..+++|.||||+||||+|+.|++.|... +.+.+.+.....
T Consensus 101 ~~~~IL~LvGPpG~GKSsLa~~la~~le~~--~~Y~~kg~~~~s 142 (644)
T PRK15455 101 EKKQILYLLGPVGGGKSSLAERLKSLMERV--PIYVLKANGERS 142 (644)
T ss_pred CCCceEEEecCCCCCchHHHHHHHHHHHhC--cceeecCCCCCC
Confidence 466799999999999999999999999743 666666544333
No 337
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.18 E-value=0.00075 Score=60.78 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=35.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
++.++.|.|+|||||||+|-.++......|..+.|+|.+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~ 93 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEH 93 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccc
Confidence 6789999999999999999998887766788899998764
No 338
>KOG2004|consensus
Probab=97.17 E-value=0.00044 Score=67.22 Aligned_cols=40 Identities=28% Similarity=0.368 Sum_probs=33.2
Q ss_pred hhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388 15 DFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD 57 (272)
Q Consensus 15 ~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld 57 (272)
..+...+|+++.|.||||.|||++|+.+|+.| |..+..++
T Consensus 431 kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL---nRkFfRfS 470 (906)
T KOG2004|consen 431 KLRGSVQGKILCFVGPPGVGKTSIAKSIARAL---NRKFFRFS 470 (906)
T ss_pred hhcccCCCcEEEEeCCCCCCcccHHHHHHHHh---CCceEEEe
Confidence 34455689999999999999999999999999 55665554
No 339
>KOG0738|consensus
Probab=97.17 E-value=0.0047 Score=56.42 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=23.8
Q ss_pred CCC-eEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSN-ICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~-~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
++| +=|++.||||+|||-+|++++...
T Consensus 242 rrPWkgvLm~GPPGTGKTlLAKAvATEc 269 (491)
T KOG0738|consen 242 RRPWKGVLMVGPPGTGKTLLAKAVATEC 269 (491)
T ss_pred ccccceeeeeCCCCCcHHHHHHHHHHhh
Confidence 444 568999999999999999999998
No 340
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.17 E-value=0.00073 Score=58.05 Aligned_cols=41 Identities=27% Similarity=0.345 Sum_probs=34.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
.++.++++.|.|||||||++.+++.....+|.++.|++.+.
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~ 63 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN 63 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 36789999999999999999999766545677888888754
No 341
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.17 E-value=0.00057 Score=61.84 Aligned_cols=36 Identities=25% Similarity=0.357 Sum_probs=28.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD 57 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld 57 (272)
+.++..++|.|+||+||||+|+.+++.+ +.++.+.+
T Consensus 48 ~~~~~~~ll~GppG~GKT~la~~ia~~l---~~~~~~~~ 83 (328)
T PRK00080 48 GEALDHVLLYGPPGLGKTTLANIIANEM---GVNIRITS 83 (328)
T ss_pred CCCCCcEEEECCCCccHHHHHHHHHHHh---CCCeEEEe
Confidence 3455688999999999999999999998 54554443
No 342
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.17 E-value=0.00041 Score=52.30 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIE 43 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La 43 (272)
.++.++.|.|++||||||+++.+.
T Consensus 13 ~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 13 YGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred cCCEEEEEEcCCCCCHHHHHHHhh
Confidence 356899999999999999999986
No 343
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.16 E-value=0.001 Score=56.71 Aligned_cols=36 Identities=25% Similarity=0.173 Sum_probs=27.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR 62 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~ 62 (272)
..|..++|.|.||+||||+|+.|+. +..+++.|..-
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~~-------~~~~~~~d~~~ 45 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLPG-------KTLVLSFDMSS 45 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcCC-------CCEEEeccccc
Confidence 3467899999999999999998863 35567766643
No 344
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.16 E-value=0.00068 Score=63.37 Aligned_cols=43 Identities=28% Similarity=0.295 Sum_probs=32.4
Q ss_pred hhhhhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388 12 WLRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD 57 (272)
Q Consensus 12 ~~r~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld 57 (272)
.++....+.++..++|.|+||+||||+|+.+++.+ +..+..++
T Consensus 26 ~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~---~~~~~~l~ 68 (413)
T PRK13342 26 PLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT---DAPFEALS 68 (413)
T ss_pred HHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEe
Confidence 35555555666678899999999999999999987 44554444
No 345
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.16 E-value=0.00063 Score=60.69 Aligned_cols=34 Identities=26% Similarity=0.352 Sum_probs=27.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYAL 56 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~l 56 (272)
.++..++|+|+||+||||+|+++++.+ +.++..+
T Consensus 28 ~~~~~~ll~Gp~G~GKT~la~~ia~~~---~~~~~~~ 61 (305)
T TIGR00635 28 EALDHLLLYGPPGLGKTTLAHIIANEM---GVNLKIT 61 (305)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHh---CCCEEEe
Confidence 345578999999999999999999998 4444443
No 346
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.15 E-value=0.011 Score=57.80 Aligned_cols=30 Identities=30% Similarity=0.431 Sum_probs=25.9
Q ss_pred cCCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 18 EGQSNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
.++-+..++|+|++|+||||+|+.|++.|.
T Consensus 34 ~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~Ln 63 (618)
T PRK14951 34 QQRLHHAYLFTGTRGVGKTTVSRILAKSLN 63 (618)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 334567789999999999999999999994
No 347
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.15 E-value=0.02 Score=54.95 Aligned_cols=29 Identities=34% Similarity=0.416 Sum_probs=25.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
++-+..++|+|++|+||||+|+.+++.|.
T Consensus 35 ~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (509)
T PRK14958 35 QYLHHAYLFTGTRGVGKTTISRILAKCLN 63 (509)
T ss_pred CCCCeeEEEECCCCCCHHHHHHHHHHHhc
Confidence 34566789999999999999999999994
No 348
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.15 E-value=0.00074 Score=56.65 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=22.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIA 48 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~ 48 (272)
+|+|+|++||||||+.++|...+..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 7999999999999999999988854
No 349
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=97.14 E-value=0.0034 Score=54.21 Aligned_cols=41 Identities=27% Similarity=0.502 Sum_probs=35.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR 62 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~ 62 (272)
..++++.|--|+||||++..|+..+..+|.++..+|.|...
T Consensus 3 ~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n 43 (241)
T PRK13886 3 KIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVN 43 (241)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence 34566679999999999999999998889999999999654
No 350
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.14 E-value=0.00071 Score=55.52 Aligned_cols=40 Identities=25% Similarity=0.398 Sum_probs=29.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCCEEEecCccc
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLI-AQGIPAYALDGDNL 61 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~-~~g~~~~~ld~D~i 61 (272)
-..++|+|++|+|||.+|++|++.+. ....+...+|.-.+
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~ 43 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEY 43 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcc
Confidence 35789999999999999999999994 22234555554433
No 351
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=97.14 E-value=0.00034 Score=59.47 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
++|.++|.|||||||+|+.+.+.
T Consensus 1 miI~i~G~~gsGKstva~~~~~~ 23 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIEN 23 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHhc
Confidence 47999999999999999999876
No 352
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.13 E-value=0.00057 Score=65.51 Aligned_cols=35 Identities=34% Similarity=0.568 Sum_probs=28.1
Q ss_pred hhhhhhcCC-CCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 12 WLRDFKEGQ-SNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 12 ~~r~~~~~~-~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
|+.....+. +..+++|+||+||||||..+.|++.|
T Consensus 34 wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 34 WLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred HHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 444444333 35799999999999999999999999
No 353
>PRK06620 hypothetical protein; Validated
Probab=97.12 E-value=0.0024 Score=54.30 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
..++|.|++||||||+++++++..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS 68 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc
Confidence 568999999999999999988876
No 354
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=97.12 E-value=0.0007 Score=59.11 Aligned_cols=38 Identities=32% Similarity=0.411 Sum_probs=35.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
++++++|.+|+||||++..++..+...|.++..+|.|-
T Consensus 1 ~~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~ 38 (254)
T cd00550 1 RYIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDP 38 (254)
T ss_pred CEEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCC
Confidence 37899999999999999999999999999999999885
No 355
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.11 E-value=0.03 Score=50.84 Aligned_cols=30 Identities=37% Similarity=0.473 Sum_probs=26.1
Q ss_pred cCCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 18 EGQSNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
.++.|..++|.|++|+||||+|+.+++.+.
T Consensus 32 ~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 32 NGRIAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345567889999999999999999999984
No 356
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.11 E-value=0.026 Score=57.07 Aligned_cols=28 Identities=32% Similarity=0.402 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
+-+..++|+|++|+||||+|+.+++.|.
T Consensus 36 rl~HAyLFtGPpGtGKTTLARiLAk~Ln 63 (944)
T PRK14949 36 RLHHAYLFTGTRGVGKTSLARLFAKGLN 63 (944)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcc
Confidence 4466789999999999999999999994
No 357
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=97.11 E-value=0.0007 Score=57.62 Aligned_cols=39 Identities=26% Similarity=0.416 Sum_probs=35.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR 62 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~ 62 (272)
+++++|.+|+||||++..++..+...|.++.++|.|.-.
T Consensus 1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~ 39 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAH 39 (217)
T ss_pred CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCCc
Confidence 478999999999999999999999999999999988544
No 358
>KOG4235|consensus
Probab=97.11 E-value=0.0023 Score=53.10 Aligned_cols=24 Identities=13% Similarity=0.022 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
++.+|.|..|+||||.-+-+.+..
T Consensus 23 r~~~iEGNIa~GKsTfl~~~~~~t 46 (244)
T KOG4235|consen 23 RLSIIEGNIAVGKSTFLNFFLNKT 46 (244)
T ss_pred eeEEEecccccchHHHHHHHHhcc
Confidence 566699999999999999887765
No 359
>KOG3078|consensus
Probab=97.10 E-value=0.0056 Score=52.42 Aligned_cols=113 Identities=13% Similarity=0.131 Sum_probs=60.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC-ccccccccccCCCCHHHHHHHHHH--------HHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG-DNLRNGINANLAFSEEDRNENVRR--------AAECAKMFA 91 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~-D~i~~~l~~~~~~~~~~~~~~~~~--------i~~~~~~~~ 91 (272)
++.-.++.|+||+||+|+|..+.+.+ .+.++.+ |.+|..+...-.+.... .+.+.+ +.......+
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~-----~~~hl~tGdllr~~ia~~telg~~~-~~~~~~g~lvpDeiv~~~l~~~l 87 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNF-----GVIHISTGDLLRDEIASGTELGKEA-KEAIDKGKLVPDEVVVRLLEKRL 87 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhc-----CCccchhHHHHHHHHhccCcHHHHH-HHHHHhcCcCcHHHHHHHHHhhc
Confidence 56778999999999999999999998 5555554 44454433221111100 111110 011122222
Q ss_pred hCC---CeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388 92 ECG---FIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG 142 (272)
Q Consensus 92 ~~g---~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r 142 (272)
+.+ ...+.|..-......+. +.+..-....+|.|.+|.+.+.+|+..|
T Consensus 88 ~~~~~~~~~ildg~Prt~~qa~~---l~~~~~~~d~Vi~l~vp~~~L~~ri~~r 138 (235)
T KOG3078|consen 88 ENPRCQKGFILDGFPRTVQQAEE---LLDRIAQIDLVINLKVPEEVLVDRITGR 138 (235)
T ss_pred cccccccccccCCCCcchHHHHH---HHHccCCcceEEEecCCHHHHHHHHhcc
Confidence 222 23333432211111122 2222223557899999999999999765
No 360
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.09 E-value=0.0006 Score=55.85 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=27.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD 59 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D 59 (272)
+++|+|++||||||+|..++... +.++.|+++.
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~---~~~~~y~at~ 33 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAEL---GGPVTYIATA 33 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc---CCCeEEEEcc
Confidence 47899999999999999998773 5577788654
No 361
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.09 E-value=0.00082 Score=52.02 Aligned_cols=34 Identities=29% Similarity=0.466 Sum_probs=29.0
Q ss_pred cCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Q psy17388 18 EGQSNICLLFPGLSGAGKTSISFQIESYLIAQGI 51 (272)
Q Consensus 18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~ 51 (272)
.+.+|.++-+.|.+|+|||.+++.||+.|-..|.
T Consensus 49 ~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~ 82 (127)
T PF06309_consen 49 NPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGM 82 (127)
T ss_pred CCCCCEEEEeecCCCCcHHHHHHHHHHHHHhccc
Confidence 3468899999999999999999999999855443
No 362
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.08 E-value=0.029 Score=55.20 Aligned_cols=29 Identities=31% Similarity=0.424 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIA 48 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~ 48 (272)
+-+..++|+|++|+||||+|+.+++.|..
T Consensus 36 rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 36 RLHHAYLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 34556899999999999999999999953
No 363
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=97.08 E-value=0.00072 Score=54.07 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
+.=|+|+|+||+||||+|.+|.++
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 456899999999999999988886
No 364
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.08 E-value=0.0037 Score=58.23 Aligned_cols=40 Identities=18% Similarity=0.230 Sum_probs=32.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEecCccc
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQ--GIPAYALDGDNL 61 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~--g~~~~~ld~D~i 61 (272)
...++|.|++|+|||+++++++..+... +..+.|++.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~ 177 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKF 177 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHH
Confidence 3468999999999999999999988665 567888876554
No 365
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.08 E-value=0.0023 Score=57.98 Aligned_cols=25 Identities=12% Similarity=0.211 Sum_probs=23.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
...|+|.|.+|+||||+++.|++.+
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~ 186 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVF 186 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 5689999999999999999999988
No 366
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.00071 Score=65.84 Aligned_cols=40 Identities=25% Similarity=0.256 Sum_probs=33.5
Q ss_pred hhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388 16 FKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG 58 (272)
Q Consensus 16 ~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~ 58 (272)
.....++.+++|.||||+|||++++.+|+.+ |.+++-++-
T Consensus 344 l~~~~kGpILcLVGPPGVGKTSLgkSIA~al---~RkfvR~sL 383 (782)
T COG0466 344 LTKKLKGPILCLVGPPGVGKTSLGKSIAKAL---GRKFVRISL 383 (782)
T ss_pred HhccCCCcEEEEECCCCCCchhHHHHHHHHh---CCCEEEEec
Confidence 3455688999999999999999999999999 667766553
No 367
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.08 E-value=0.024 Score=55.37 Aligned_cols=28 Identities=32% Similarity=0.420 Sum_probs=24.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
+-+..++|+|++|+||||+|+.|++.+.
T Consensus 36 ri~ha~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 36 RVAPAYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhcc
Confidence 3356799999999999999999999994
No 368
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.08 E-value=0.0075 Score=57.44 Aligned_cols=28 Identities=14% Similarity=0.253 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
.+|.++.+.|+||+||||+.+.|.+++-
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~t 94 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFT 94 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHH
Confidence 4566677999999999999999999884
No 369
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.08 E-value=0.0057 Score=57.81 Aligned_cols=39 Identities=21% Similarity=0.340 Sum_probs=32.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEecCccc
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQ--GIPAYALDGDNL 61 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~--g~~~~~ld~D~i 61 (272)
..++|.|++|+|||+++++++..+... +..+.|++.+.+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~ 189 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKF 189 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 458999999999999999999998765 566778776554
No 370
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.07 E-value=0.0047 Score=58.37 Aligned_cols=41 Identities=24% Similarity=0.369 Sum_probs=32.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHH--cCCCEEEecCccccc
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIA--QGIPAYALDGDNLRN 63 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~--~g~~~~~ld~D~i~~ 63 (272)
.-++|.|.+|+|||+++++++..+.. .+..+.|+..+.+..
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~ 184 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFAR 184 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH
Confidence 34899999999999999999997754 356777887766544
No 371
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.07 E-value=0.0061 Score=58.18 Aligned_cols=42 Identities=19% Similarity=0.153 Sum_probs=36.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
.++.+++|.|+||+||||++.+++.....+|.++.|+..++-
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs 302 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEES 302 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCC
Confidence 367899999999999999999999988777888888887653
No 372
>PRK13695 putative NTPase; Provisional
Probab=97.06 E-value=0.00097 Score=54.56 Aligned_cols=31 Identities=26% Similarity=0.462 Sum_probs=25.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCE
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPA 53 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~ 53 (272)
+.|+|+|.+||||||+++.+...+...|..+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l~~~G~~~ 31 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELLKEEGYKV 31 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 4689999999999999999998876556553
No 373
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.05 E-value=0.011 Score=54.97 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
+-+.-++|+|++|+||||+|+.+++.+.
T Consensus 36 ~~~ha~lf~Gp~G~GKtt~A~~~a~~l~ 63 (397)
T PRK14955 36 RVGHGYIFSGLRGVGKTTAARVFAKAVN 63 (397)
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHhc
Confidence 4455689999999999999999999994
No 374
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.05 E-value=0.00077 Score=55.81 Aligned_cols=28 Identities=25% Similarity=0.247 Sum_probs=25.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
.++.+++++|+|||||||+.+.|.....
T Consensus 26 ~~Gef~fl~GpSGAGKSTllkLi~~~e~ 53 (223)
T COG2884 26 PKGEFVFLTGPSGAGKSTLLKLIYGEER 53 (223)
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhhhc
Confidence 5789999999999999999999998764
No 375
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.05 E-value=0.0059 Score=57.62 Aligned_cols=39 Identities=18% Similarity=0.146 Sum_probs=33.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
.-++|.|++|+|||+++++++..+...|..+.|++.+.+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f 180 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELF 180 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHH
Confidence 457899999999999999999998777888888887543
No 376
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=97.05 E-value=0.00058 Score=63.25 Aligned_cols=29 Identities=28% Similarity=0.528 Sum_probs=25.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGI 51 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~ 51 (272)
.=|++.|+||+||||+|++||+.+..+|.
T Consensus 264 eGILIAG~PGaGKsTFaqAlAefy~~~Gk 292 (604)
T COG1855 264 EGILIAGAPGAGKSTFAQALAEFYASQGK 292 (604)
T ss_pred cceEEecCCCCChhHHHHHHHHHHHhcCc
Confidence 34899999999999999999999987775
No 377
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=97.05 E-value=0.001 Score=54.91 Aligned_cols=38 Identities=26% Similarity=0.349 Sum_probs=33.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
+.+.++-.|+||||+|..|+..|..+|+++..+|.|.-
T Consensus 1 I~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~ 38 (195)
T PF01656_consen 1 IAVTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQ 38 (195)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTT
T ss_pred CEEEcCCCCccHHHHHHHHHhccccccccccccccCcc
Confidence 45788999999999999999999999999999998853
No 378
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.05 E-value=0.0012 Score=59.46 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=35.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
++.++.|.|+|||||||+|-.++......|..+.|+|.+.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~ 93 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEH 93 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccc
Confidence 6789999999999999999999887766777899999754
No 379
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.04 E-value=0.0011 Score=54.69 Aligned_cols=35 Identities=20% Similarity=0.335 Sum_probs=27.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD 59 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D 59 (272)
+++|+|+.||||||+.+.|.+ ....|.++.++-.|
T Consensus 2 v~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~ne 36 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLK-RNRQGERVAVIVNE 36 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEECS
T ss_pred EEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEcc
Confidence 789999999999999999997 44456677666544
No 380
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.04 E-value=0.00071 Score=63.11 Aligned_cols=36 Identities=25% Similarity=0.411 Sum_probs=29.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
...|+|.|+||+||||+|+.|++.+ +.++..+|...
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l---~~pf~~id~~~ 143 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARIL---DVPFAIADATT 143 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHh---CCCceecchhh
Confidence 3569999999999999999999998 55666666543
No 381
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.04 E-value=0.00054 Score=58.69 Aligned_cols=41 Identities=24% Similarity=0.301 Sum_probs=31.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
.+|..+.|.|.|||||||+++.|+-.... ..+.+.+++..+
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p-~~G~I~~~G~~~ 71 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEKP-SSGSILLDGKPL 71 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccCC-CCceEEECCccc
Confidence 47889999999999999999999976532 224556776433
No 382
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.04 E-value=0.001 Score=45.01 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
+.+.+|+|..||||||+-.++.-.|
T Consensus 23 g~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999998877
No 383
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.03 E-value=0.00094 Score=57.93 Aligned_cols=40 Identities=20% Similarity=0.402 Sum_probs=34.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR 62 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~ 62 (272)
..++|.|.+|+|||+++.+++..+...|..+.+++..++.
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~ 139 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIM 139 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHH
Confidence 4689999999999999999999998888888888765444
No 384
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.03 E-value=0.031 Score=54.43 Aligned_cols=30 Identities=27% Similarity=0.362 Sum_probs=25.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLIA 48 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~ 48 (272)
++.+..++|+|++|+||||+|+.+++.+.+
T Consensus 35 ~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C 64 (605)
T PRK05896 35 NKLTHAYIFSGPRGIGKTSIAKIFAKAINC 64 (605)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 345667899999999999999999999953
No 385
>PRK10646 ADP-binding protein; Provisional
Probab=97.03 E-value=0.00071 Score=54.33 Aligned_cols=27 Identities=30% Similarity=0.305 Sum_probs=25.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
+++.+|+|.|.-||||||++|.+++.|
T Consensus 26 ~~g~vi~L~GdLGaGKTtf~rgl~~~L 52 (153)
T PRK10646 26 DGATVIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 567899999999999999999999999
No 386
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.03 E-value=0.0023 Score=59.47 Aligned_cols=27 Identities=11% Similarity=0.134 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.-...|+|+|.+||||||++++|++.+
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999999998
No 387
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.02 E-value=0.0011 Score=63.25 Aligned_cols=43 Identities=23% Similarity=0.228 Sum_probs=35.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEecCccccc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQ--GIPAYALDGDNLRN 63 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~--g~~~~~ld~D~i~~ 63 (272)
++.+|.|+|++|+||||++..|+..+... +.++.+++.|..+.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRi 393 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRV 393 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccc
Confidence 57899999999999999999999877543 35688888887653
No 388
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.02 E-value=0.001 Score=56.58 Aligned_cols=41 Identities=20% Similarity=0.185 Sum_probs=33.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcC------CCEEEecCcc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQG------IPAYALDGDN 60 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g------~~~~~ld~D~ 60 (272)
.++.++.|.|+||+|||+++..++......+ ..+.|++++.
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 4678999999999999999999987754344 6788888764
No 389
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.01 E-value=0.051 Score=53.39 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=24.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
+-+--++|+|++|+||||+|+.+++.+.
T Consensus 36 ri~ha~Lf~Gp~GvGKttlA~~lAk~L~ 63 (620)
T PRK14954 36 RVGHGYIFSGLRGVGKTTAARVFAKAVN 63 (620)
T ss_pred CCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4456699999999999999999999993
No 390
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.01 E-value=0.00069 Score=56.19 Aligned_cols=28 Identities=21% Similarity=0.434 Sum_probs=25.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
.++.+++|+|++||||||+.++|...++
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4567999999999999999999998875
No 391
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=97.00 E-value=0.0012 Score=53.74 Aligned_cols=39 Identities=23% Similarity=0.351 Sum_probs=34.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR 62 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~ 62 (272)
+.+.++-.|+||||+|..|+..+...|.++..+|.|.-+
T Consensus 2 i~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~ 40 (169)
T cd02037 2 IAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYG 40 (169)
T ss_pred EEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 457789999999999999999999899999999999644
No 392
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=97.00 E-value=0.0012 Score=55.78 Aligned_cols=38 Identities=21% Similarity=0.263 Sum_probs=34.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
+|.+.|-.|+||||++--|+..|...|.++..+|.|.-
T Consensus 2 ~iav~gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q 39 (212)
T cd02117 2 QIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPK 39 (212)
T ss_pred EEEEECCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 57888999999999999999999999999999999854
No 393
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.99 E-value=0.014 Score=57.02 Aligned_cols=30 Identities=23% Similarity=0.413 Sum_probs=26.0
Q ss_pred cCCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 18 EGQSNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
.++.+.-++|+|++|+||||+|+.|++.|.
T Consensus 42 ~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~ 71 (598)
T PRK09111 42 TGRIAQAFMLTGVRGVGKTTTARILARALN 71 (598)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHhhC
Confidence 344566799999999999999999999994
No 394
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.98 E-value=0.00053 Score=53.27 Aligned_cols=22 Identities=32% Similarity=0.632 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHHH
Q psy17388 25 LLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 25 I~l~G~~GsGKSTlAr~La~~L 46 (272)
|+|.|.||.||||++++|++.+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~ 23 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL 23 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT
T ss_pred EeeECCCccHHHHHHHHHHHHc
Confidence 7899999999999999999998
No 395
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.98 E-value=0.0009 Score=62.28 Aligned_cols=34 Identities=26% Similarity=0.426 Sum_probs=28.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD 59 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D 59 (272)
..|+|.|+||+|||++|++|++.+ +.++..++.-
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l---~~pf~~~da~ 150 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARIL---NVPFAIADAT 150 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhc---CCCeEEechh
Confidence 579999999999999999999988 5566555543
No 396
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.98 E-value=0.022 Score=55.00 Aligned_cols=29 Identities=28% Similarity=0.410 Sum_probs=25.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
++.+..++|+|++|+||||+|+.+++.+.
T Consensus 35 ~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 35 QRLHHAYLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34566789999999999999999999994
No 397
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.98 E-value=0.00068 Score=64.88 Aligned_cols=39 Identities=23% Similarity=0.489 Sum_probs=31.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
...|.-++|.|+||+|||++|++++..+ +.+++.++...
T Consensus 85 ~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~ 123 (495)
T TIGR01241 85 AKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPFFSISGSD 123 (495)
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCeeeccHHH
Confidence 3456679999999999999999999887 66776666443
No 398
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.97 E-value=0.0016 Score=54.10 Aligned_cols=41 Identities=20% Similarity=0.214 Sum_probs=32.8
Q ss_pred CCC-eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 20 QSN-ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 20 ~~~-~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
.+| ..|-+.|+|||||||+...+-+.|... ++...+-.|.+
T Consensus 10 ~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~ 51 (202)
T COG0378 10 NRPMLRIGVGGPPGSGKTALIEKTLRALKDE-YKIAVITGDIY 51 (202)
T ss_pred cCceEEEEecCCCCcCHHHHHHHHHHHHHhh-CCeEEEeceee
Confidence 344 789999999999999999999888654 67777776654
No 399
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.97 E-value=0.01 Score=52.22 Aligned_cols=42 Identities=17% Similarity=0.157 Sum_probs=36.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR 62 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~ 62 (272)
++..|.|.|++|+||||+++.|+..+...+..+.+++.|..+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r 115 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 115 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 457999999999999999999999887667778888888765
No 400
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=96.96 E-value=0.0076 Score=56.45 Aligned_cols=40 Identities=15% Similarity=0.269 Sum_probs=34.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCCEEEecCc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLI-AQGIPAYALDGD 59 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~-~~g~~~~~ld~D 59 (272)
+++.+++|.|.||+||||++-.++..+. ..|.++.+++.+
T Consensus 192 ~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlE 232 (421)
T TIGR03600 192 VKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLE 232 (421)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 4678999999999999999999997775 468888888865
No 401
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.96 E-value=0.0012 Score=57.63 Aligned_cols=43 Identities=26% Similarity=0.414 Sum_probs=36.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
++..++|.|+||+|||.+|-+++..+...|+.+.++..-++..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~ 146 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLS 146 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence 5678999999999999999999999987788988887654443
No 402
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.96 E-value=0.0015 Score=54.66 Aligned_cols=37 Identities=24% Similarity=0.333 Sum_probs=30.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD 57 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld 57 (272)
...+.++.|++|+||||+.+.+.+.+...|.++..+.
T Consensus 17 ~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~a 53 (196)
T PF13604_consen 17 GDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLA 53 (196)
T ss_dssp TCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEEC
Confidence 4468899999999999999999999988887776664
No 403
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=96.95 E-value=0.0014 Score=57.50 Aligned_cols=38 Identities=24% Similarity=0.334 Sum_probs=35.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
++|.+.|--|+||||++--|+..|..+|.++..+|.|-
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dp 38 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDP 38 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCC
Confidence 46888899999999999999999999999999999984
No 404
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.95 E-value=0.0027 Score=55.27 Aligned_cols=29 Identities=21% Similarity=0.125 Sum_probs=25.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIA 48 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~ 48 (272)
.+|..+.|.|++|+||||+++.+...+..
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 46778999999999999999999998743
No 405
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.95 E-value=0.0014 Score=62.16 Aligned_cols=42 Identities=21% Similarity=0.325 Sum_probs=34.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH-cC-CCEEEecCcccc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIA-QG-IPAYALDGDNLR 62 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~-~g-~~~~~ld~D~i~ 62 (272)
+|.+|.|.|+.|+||||++..|+..+.. +| ..+.+++.|..+
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~R 298 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYR 298 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccc
Confidence 4679999999999999999999988743 44 367788888754
No 406
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.94 E-value=0.0017 Score=58.34 Aligned_cols=42 Identities=21% Similarity=0.195 Sum_probs=35.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR 62 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~ 62 (272)
.+.-++|.|++|+|||+++.+++..+..+|+.+.++....+.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~ 196 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFI 196 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHH
Confidence 345799999999999999999999998889888887655443
No 407
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.94 E-value=0.0012 Score=61.99 Aligned_cols=36 Identities=17% Similarity=0.235 Sum_probs=28.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG 58 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~ 58 (272)
.+|.-++|.|+||+|||++|++++..+ +.+++.++.
T Consensus 215 ~~p~gVLL~GPPGTGKT~LAraIA~el---~~~fi~V~~ 250 (438)
T PTZ00361 215 KPPKGVILYGPPGTGKTLLAKAVANET---SATFLRVVG 250 (438)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh---CCCEEEEec
Confidence 466778999999999999999999988 445554443
No 408
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.94 E-value=0.0015 Score=60.09 Aligned_cols=40 Identities=23% Similarity=0.424 Sum_probs=35.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
++.+++|.|.||+||||++.+++..+...|.++.|++.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE 120 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE 120 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc
Confidence 6789999999999999999999988876667888888764
No 409
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.94 E-value=0.0029 Score=60.46 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
+|.-|+|.|+||+|||++|++++..+.
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhc
Confidence 466799999999999999999999984
No 410
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.94 E-value=0.0015 Score=55.80 Aligned_cols=38 Identities=26% Similarity=0.463 Sum_probs=33.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcC-CCEEEecCcc
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQG-IPAYALDGDN 60 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g-~~~~~ld~D~ 60 (272)
+.|.|+|-=|+||||+|..|+.++..++ +++..+|.|.
T Consensus 1 mkIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp 39 (255)
T COG3640 1 MKIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP 39 (255)
T ss_pred CeEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCC
Confidence 3689999999999999999787777765 8999999996
No 411
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.94 E-value=0.0011 Score=61.73 Aligned_cols=35 Identities=17% Similarity=0.162 Sum_probs=28.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD 57 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld 57 (272)
.+|.-|+|.|+||+|||++|++++..+ +.++..+.
T Consensus 177 ~~pkgvLL~GppGTGKT~LAkalA~~l---~~~fi~i~ 211 (398)
T PTZ00454 177 DPPRGVLLYGPPGTGKTMLAKAVAHHT---TATFIRVV 211 (398)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhc---CCCEEEEe
Confidence 467789999999999999999999987 44555443
No 412
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.93 E-value=0.0018 Score=54.61 Aligned_cols=44 Identities=20% Similarity=0.279 Sum_probs=32.5
Q ss_pred hhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 16 FKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 16 ~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
-+..+.+.+|.|+|++||||||+...+.+.+.. +..+.++..|.
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~-~~~v~v~~~~~ 59 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLKD-EVKIAVIEGDV 59 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHHhc-CCeEEEEECCC
Confidence 334456789999999999999999999988642 33555565553
No 413
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.92 E-value=0.0016 Score=61.60 Aligned_cols=42 Identities=19% Similarity=0.346 Sum_probs=36.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
.++.+++|.|.||+||||++.+++..+...|.++.|++.++-
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs 133 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEES 133 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCC
Confidence 367899999999999999999999888766778889987654
No 414
>PHA02244 ATPase-like protein
Probab=96.91 E-value=0.001 Score=60.76 Aligned_cols=35 Identities=31% Similarity=0.506 Sum_probs=29.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD 57 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld 57 (272)
..+..|+|.|++|+||||+|++++..+ |.+++.++
T Consensus 117 ~~~~PVLL~GppGtGKTtLA~aLA~~l---g~pfv~In 151 (383)
T PHA02244 117 NANIPVFLKGGAGSGKNHIAEQIAEAL---DLDFYFMN 151 (383)
T ss_pred hcCCCEEEECCCCCCHHHHHHHHHHHh---CCCEEEEe
Confidence 344558899999999999999999998 66776665
No 415
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.91 E-value=0.00084 Score=57.31 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=28.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG 58 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~ 58 (272)
.+|.++.|.|+|||||||+-..++-.... .-..+++++
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~ld~p-t~G~v~i~g 66 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGGLDKP-TSGEVLING 66 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCC-CCceEEECC
Confidence 57889999999999999999999865532 113344554
No 416
>COG3911 Predicted ATPase [General function prediction only]
Probab=96.90 E-value=0.00096 Score=52.98 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
.+.+|+|.||+||||+-++|+++
T Consensus 10 ~~fIltGgpGaGKTtLL~aLa~~ 32 (183)
T COG3911 10 KRFILTGGPGAGKTTLLAALARA 32 (183)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHc
Confidence 68899999999999999999987
No 417
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.90 E-value=0.0011 Score=60.79 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.+|.-++|.|+||+||||+|++++..+
T Consensus 154 ~~p~gvLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 154 EPPKGVLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhC
Confidence 356779999999999999999999988
No 418
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.90 E-value=0.0015 Score=54.92 Aligned_cols=38 Identities=18% Similarity=0.206 Sum_probs=28.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
|..|.|+|++||||||+.+.+.+.+... .++.++..|.
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~~~-~~~~~~~~d~ 38 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALRQK-YQLAVITNDI 38 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhCcC-CcEEEEeCCc
Confidence 5689999999999999999999887432 2344555443
No 419
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.89 E-value=0.0018 Score=52.71 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=34.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
+.+.++..|+||||++..|+..+..+|.++..+|.|.-
T Consensus 2 i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~ 39 (179)
T cd02036 2 IVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLG 39 (179)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 56788899999999999999999999999999999854
No 420
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.89 E-value=0.01 Score=50.58 Aligned_cols=113 Identities=19% Similarity=0.155 Sum_probs=60.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHH--cCCCEEEecCcccccccc-----------------c------cCCCCHHHHH
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIA--QGIPAYALDGDNLRNGIN-----------------A------NLAFSEEDRN 77 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~--~g~~~~~ld~D~i~~~l~-----------------~------~~~~~~~~~~ 77 (272)
..++|.|++|+|||++.++++..+.. .+..+.|++.+.+...+. . +...- ....
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l-~~~~ 113 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFL-AGKQ 113 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGG-TTHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhh-cCch
Confidence 35799999999999999999988765 366788888665432110 0 11000 1122
Q ss_pred HHHHHHHHHHHHHHhCCCe-EEEcCCCCc--HHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhh
Q psy17388 78 ENVRRAAECAKMFAECGFI-ALCSFVSPT--AAARDRAREIHRNANLEFFEVFVNTPVEICEQRDV 140 (272)
Q Consensus 78 ~~~~~i~~~~~~~~~~g~~-VI~d~~~~~--~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~ 140 (272)
.+.+.+..+...+.++|.. |+++...|. ......++..+. .| .++-|..|.+..+.++.
T Consensus 114 ~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~-~G---l~~~l~~pd~~~r~~il 175 (219)
T PF00308_consen 114 RTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLS-WG---LVVELQPPDDEDRRRIL 175 (219)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHH-CS---EEEEE----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHh-hc---chhhcCCCCHHHHHHHH
Confidence 3334445555566666654 444433332 112334444443 23 66778777766666653
No 421
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.89 E-value=0.051 Score=51.43 Aligned_cols=29 Identities=28% Similarity=0.478 Sum_probs=25.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
++-+..++|.|++|+||||+|+.+++.+.
T Consensus 36 ~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~ 64 (451)
T PRK06305 36 NRAAHAYLFSGIRGTGKTTLARIFAKALN 64 (451)
T ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34567789999999999999999999984
No 422
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.88 E-value=0.0015 Score=60.36 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=33.5
Q ss_pred hcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcC--CCEEEecCc
Q psy17388 17 KEGQSNICLLFPGLSGAGKTSISFQIESYLIAQG--IPAYALDGD 59 (272)
Q Consensus 17 ~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g--~~~~~ld~D 59 (272)
..+..+..++|.|+||+||||+++.+.+.+...+ +.+.+++..
T Consensus 50 ~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~ 94 (394)
T PRK00411 50 LRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQ 94 (394)
T ss_pred hCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECC
Confidence 3345666789999999999999999999886543 556677654
No 423
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.87 E-value=0.0022 Score=54.63 Aligned_cols=40 Identities=23% Similarity=0.255 Sum_probs=33.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
++.+++|.|.||+|||++|..++......|.++.|++.+.
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE 54 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 5789999999999999999999876545677888888764
No 424
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.87 E-value=0.0018 Score=61.09 Aligned_cols=41 Identities=24% Similarity=0.398 Sum_probs=35.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
++.+++|.|.||+||||++.+++..+...|.++.|++.++-
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees 119 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEES 119 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcccc
Confidence 67899999999999999999999988766778899987653
No 425
>PRK06851 hypothetical protein; Provisional
Probab=96.86 E-value=0.0017 Score=59.46 Aligned_cols=34 Identities=21% Similarity=0.387 Sum_probs=29.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEE
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAY 54 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~ 54 (272)
...+++|+|+||+||||+.+++.+.+...|+.+.
T Consensus 29 ~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve 62 (367)
T PRK06851 29 ANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVE 62 (367)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 4578999999999999999999999987777654
No 426
>PRK09354 recA recombinase A; Provisional
Probab=96.85 E-value=0.0023 Score=58.27 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=34.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
++.++.|.|++||||||+|-.+.......|..+.|+|...
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~ 98 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEH 98 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCcc
Confidence 6789999999999999999998877666788899999764
No 427
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.85 E-value=0.0018 Score=53.49 Aligned_cols=39 Identities=21% Similarity=0.295 Sum_probs=29.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH----------cCCCEEEecCc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIA----------QGIPAYALDGD 59 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~----------~g~~~~~ld~D 59 (272)
++.+++|.|++|+||||++..++..+.. .+.++.|++.+
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E 79 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLE 79 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEecc
Confidence 5678999999999999999999988753 23456666654
No 428
>KOG0730|consensus
Probab=96.85 E-value=0.0014 Score=63.24 Aligned_cols=41 Identities=22% Similarity=0.329 Sum_probs=33.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
.+|+=|++.||||+||||+|++++..- +.++..+.+-++..
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~---~~nFlsvkgpEL~s 506 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEA---GMNFLSVKGPELFS 506 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhh---cCCeeeccCHHHHH
Confidence 466779999999999999999999987 66777776655543
No 429
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.84 E-value=0.00088 Score=52.23 Aligned_cols=41 Identities=15% Similarity=0.326 Sum_probs=29.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
.++.++.|.|++||||||+.+.|+...... ...+.++...+
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~~~~-~G~i~~~~~~~ 49 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLLPPD-SGSILINGKDI 49 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSSHES-EEEEEETTEEG
T ss_pred cCCCEEEEEccCCCccccceeeeccccccc-ccccccccccc
Confidence 367899999999999999999999876421 12344554433
No 430
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.83 E-value=0.0054 Score=59.64 Aligned_cols=39 Identities=26% Similarity=0.324 Sum_probs=32.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHH--cCCCEEEecCccc
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIA--QGIPAYALDGDNL 61 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~--~g~~~~~ld~D~i 61 (272)
..++|.|.+|+|||+++.+++..+.. .|..+.|+..+.+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef 355 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEF 355 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 34899999999999999999998864 3677888887654
No 431
>PF02224 Cytidylate_kin: Cytidylate kinase; InterPro: IPR011994 Cytidylate kinase (2.7.4.14 from EC) catalyses the phosphorylation of cytidine 5'-monophosphate (dCMP) to cytidine 5'-diphosphate (dCDP) in the presence of ATP or GTP. ; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase-containing compound metabolic process; PDB: 3R20_A 4DIE_A 3R8C_B 2H92_B 1KDT_A 1KDP_B 2FEO_A 1KDO_B 2CMK_A 1KDR_A ....
Probab=96.83 E-value=0.012 Score=47.41 Aligned_cols=65 Identities=14% Similarity=0.318 Sum_probs=35.1
Q ss_pred EEEEEeCCHHHHHHhhhhhhhhhhhhcccccc-------cccccc--CCC--CCCCcEEEeCCCCCHHHHHHHHHH
Q psy17388 124 FEVFVNTPVEICEQRDVKGHYKKAREGKIKSF-------TGVSQP--YEA--PKNPDLILETVNVPVEKCANSVLD 188 (272)
Q Consensus 124 ~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~-------~~~~~~--ye~--~~~~~~~Idt~~~~~ee~~~~I~~ 188 (272)
+.|||+|+++++.+|..+.+........+... ...+.. ..+ +...-+.|||++++++|++++|++
T Consensus 82 ~KifLtAs~e~RA~RR~~e~~~~g~~~~~e~v~~~i~~RD~~D~~R~~aPL~~a~DAi~IDts~lti~evv~~il~ 157 (157)
T PF02224_consen 82 LKIFLTASPEVRARRRYKELQEKGKKVSYEEVLEDIKERDERDSNREVAPLKKAEDAIVIDTSNLTIEEVVEKILE 157 (157)
T ss_dssp EEEEEE--HHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHCTSSS-SS--TTSEEEETTTS-HHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhChhhccCccCCCccCCCeEEEECCCCCHHHHHHHHhC
Confidence 78999999999999975543222111111110 001111 111 223349999999999999999874
No 432
>PRK05595 replicative DNA helicase; Provisional
Probab=96.83 E-value=0.015 Score=54.82 Aligned_cols=40 Identities=20% Similarity=0.314 Sum_probs=33.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCCEEEecCc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLI-AQGIPAYALDGD 59 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~-~~g~~~~~ld~D 59 (272)
+++.+|+|.|.||+||||++-.++..+. ..|.++.+++.+
T Consensus 199 ~~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlE 239 (444)
T PRK05595 199 QKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLE 239 (444)
T ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecC
Confidence 4678999999999999999999998654 357788888764
No 433
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=96.82 E-value=0.0019 Score=56.86 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=34.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
.|.+.|--|+||||++--|+..|...|+++..+|.|.
T Consensus 2 ~ia~~gKGGVGKTT~a~nLA~~La~~G~~VlliD~D~ 38 (275)
T TIGR01287 2 QIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIVGCDP 38 (275)
T ss_pred eeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 6888899999999999999999999999999999984
No 434
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.82 E-value=0.0011 Score=57.06 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=29.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
.+|.++.|.|+|||||||+-+.++-...... ..+.+++..
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAGL~~p~~-G~V~~~g~~ 66 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAGLEKPTS-GEVLLDGRP 66 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-ceEEECCcc
Confidence 5789999999999999999999997653221 234555543
No 435
>PRK05748 replicative DNA helicase; Provisional
Probab=96.81 E-value=0.013 Score=55.34 Aligned_cols=40 Identities=15% Similarity=0.197 Sum_probs=33.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCCEEEecCc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLI-AQGIPAYALDGD 59 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~-~~g~~~~~ld~D 59 (272)
+++.+|+|.|.||+||||++-.++.... ..|.++.+++.+
T Consensus 201 ~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlE 241 (448)
T PRK05748 201 QPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLE 241 (448)
T ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 4678999999999999999999998764 347788787754
No 436
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.80 E-value=0.042 Score=53.65 Aligned_cols=30 Identities=33% Similarity=0.465 Sum_probs=25.9
Q ss_pred cCCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 18 EGQSNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
.++-+..++|+|++|+||||+|+.|++.+.
T Consensus 34 ~~~~~hayLf~Gp~G~GKtt~A~~lak~l~ 63 (576)
T PRK14965 34 TGRVAHAFLFTGARGVGKTSTARILAKALN 63 (576)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 334567789999999999999999999984
No 437
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.80 E-value=0.0012 Score=54.83 Aligned_cols=27 Identities=26% Similarity=0.517 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.++.|.|++||||||+.+.|+-.+
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998765
No 438
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.80 E-value=0.0013 Score=57.35 Aligned_cols=42 Identities=19% Similarity=0.270 Sum_probs=33.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR 62 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~ 62 (272)
.++.++.|.|+.||||||+-|.|+..+.... +.+++|+..+.
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~-G~V~l~g~~i~ 67 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLAGLLKPKS-GEVLLDGKDIA 67 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCCCCC-CEEEECCCchh
Confidence 4688999999999999999999999885322 35677775543
No 439
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=96.80 E-value=0.0021 Score=56.14 Aligned_cols=39 Identities=18% Similarity=0.223 Sum_probs=34.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
++|.+.|--|+||||++-.|+..|...|.++..+|.|.-
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq 40 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPK 40 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCC
Confidence 357777999999999999999999999999999999853
No 440
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.78 E-value=0.0012 Score=55.95 Aligned_cols=27 Identities=26% Similarity=0.269 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.++.|.|++||||||+.+.|+-.+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 477899999999999999999999765
No 441
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.78 E-value=0.032 Score=55.43 Aligned_cols=28 Identities=32% Similarity=0.430 Sum_probs=25.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
+-+..++|+|++|+||||+|+.+++.+.
T Consensus 38 rl~HAYLF~GP~GtGKTt~AriLAk~Ln 65 (725)
T PRK07133 38 KISHAYLFSGPRGTGKTSVAKIFANALN 65 (725)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 4466789999999999999999999984
No 442
>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2.7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....
Probab=96.78 E-value=0.00042 Score=55.28 Aligned_cols=81 Identities=14% Similarity=0.235 Sum_probs=46.1
Q ss_pred HHHHHHHHhCCC-ceEEEEEeCCHHHHHHhhhhhhhhhhhhcccccccccc-ccCCC----C-CCCcEEEeCCCCCHHHH
Q psy17388 110 DRAREIHRNANL-EFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVS-QPYEA----P-KNPDLILETVNVPVEKC 182 (272)
Q Consensus 110 ~~~~~~~~~~g~-~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~-~~ye~----~-~~~~~~Idt~~~~~ee~ 182 (272)
.....+...... |.++|||++|++++.+|+.+|.+.-...-....+..+. +.|+. . ..+-++||++..+..+.
T Consensus 55 ~~~~~l~~~~~~~pdl~IYL~~~~e~~~~RI~kRgR~~E~~i~~~Yl~~L~~~~y~~~~~~~~~~~vl~id~~~~d~~~~ 134 (146)
T PF01712_consen 55 KLFDELIEEIPKSPDLIIYLDASPETCLERIKKRGREEEKNIPLEYLERLHEEAYEDWLKKYDSTPVLVIDADNLDFVEN 134 (146)
T ss_dssp HHHHHHHHHCCHH-SEEEEEE--HHHHHHHHHHCTTGGGTTS-HHHHHHHHHHHHCCHHSCCTTTTGCEEEECEEECCSH
T ss_pred HHHHHHHHHhhccCCeEEEEeCCHHHHHHHHHHhCCchhcCCCHHHHHHHhHHHHHHHHHhCCCCceEEEECCccCcccC
Confidence 333444455555 67899999999999999988754322211112233344 44443 2 34568999887666665
Q ss_pred HHHHHHHH
Q psy17388 183 ANSVLDMI 190 (272)
Q Consensus 183 ~~~I~~~L 190 (272)
.+.+...+
T Consensus 135 ~~~~~~~~ 142 (146)
T PF01712_consen 135 PEDIEQVI 142 (146)
T ss_dssp HTTHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
No 443
>CHL00176 ftsH cell division protein; Validated
Probab=96.77 E-value=0.0015 Score=64.19 Aligned_cols=39 Identities=23% Similarity=0.435 Sum_probs=31.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
..|.-|+|.|+||+|||++|++++..+ +.+++.++...+
T Consensus 214 ~~p~gVLL~GPpGTGKT~LAralA~e~---~~p~i~is~s~f 252 (638)
T CHL00176 214 KIPKGVLLVGPPGTGKTLLAKAIAGEA---EVPFFSISGSEF 252 (638)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh---CCCeeeccHHHH
Confidence 456779999999999999999999987 667776665433
No 444
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.77 E-value=0.0013 Score=55.41 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.++.|.|++||||||+.+.|+-.+
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 478899999999999999999999765
No 445
>PRK06851 hypothetical protein; Provisional
Probab=96.76 E-value=0.0022 Score=58.80 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=30.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYAL 56 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~l 56 (272)
.++++|+|.||+||||+.+.+++.+..+|..+.++
T Consensus 214 ~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~ 248 (367)
T PRK06851 214 KNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVY 248 (367)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 46899999999999999999999998888876543
No 446
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.75 E-value=0.0013 Score=55.37 Aligned_cols=27 Identities=26% Similarity=0.258 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.+|.++.|.|++||||||+.+.|+-.+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999999999765
No 447
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.75 E-value=0.0013 Score=55.51 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.++.|.|++||||||+.+.|+-.+
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999999765
No 448
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=96.75 E-value=0.0015 Score=51.91 Aligned_cols=28 Identities=32% Similarity=0.334 Sum_probs=26.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
.++.+|++.|.-||||||++|.+++.|.
T Consensus 23 ~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg 50 (149)
T COG0802 23 KAGDVVLLSGDLGAGKTTLVRGIAKGLG 50 (149)
T ss_pred CCCCEEEEEcCCcCChHHHHHHHHHHcC
Confidence 5788999999999999999999999994
No 449
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.73 E-value=0.016 Score=55.32 Aligned_cols=40 Identities=28% Similarity=0.267 Sum_probs=31.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH-HHHcCCCEEEecCcc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESY-LIAQGIPAYALDGDN 60 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~-L~~~g~~~~~ld~D~ 60 (272)
++.+++|+|+|||||||+|.++... +...|.++.|+..++
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE 60 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE 60 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 6789999999999999999998654 322367888887653
No 450
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.73 E-value=0.0014 Score=55.55 Aligned_cols=28 Identities=18% Similarity=0.207 Sum_probs=25.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
.++.++.|.|++||||||+.+.|+-.+.
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence 4678999999999999999999997763
No 451
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.73 E-value=0.0014 Score=55.58 Aligned_cols=28 Identities=29% Similarity=0.313 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
.++.++.|.|++||||||+.+.|+-.+.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMGLLP 51 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4788999999999999999999987653
No 452
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.73 E-value=0.0014 Score=55.39 Aligned_cols=27 Identities=33% Similarity=0.421 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.++.|.|++||||||+.+.|+-.+
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999999998765
No 453
>PRK13764 ATPase; Provisional
Probab=96.73 E-value=0.0021 Score=62.48 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=28.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYAL 56 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~l 56 (272)
...|+++|++||||||++++|...+...+..+..+
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~Ti 291 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTM 291 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEE
Confidence 45699999999999999999999997666544333
No 454
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.72 E-value=0.0014 Score=55.53 Aligned_cols=27 Identities=26% Similarity=0.225 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.++.|.|++||||||+.+.|+-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999999999765
No 455
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.72 E-value=0.0014 Score=56.25 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.++.|.|++||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999999999765
No 456
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.71 E-value=0.016 Score=54.62 Aligned_cols=39 Identities=21% Similarity=0.349 Sum_probs=31.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEecCccc
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQ--GIPAYALDGDNL 61 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~--g~~~~~ld~D~i 61 (272)
..++|.|++|+|||+++++++..+... +..+.|++.+.+
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f 171 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF 171 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 459999999999999999999987653 456778776553
No 457
>PRK05636 replicative DNA helicase; Provisional
Probab=96.71 E-value=0.016 Score=55.52 Aligned_cols=40 Identities=8% Similarity=0.200 Sum_probs=32.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCCEEEecCc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLI-AQGIPAYALDGD 59 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~-~~g~~~~~ld~D 59 (272)
+++.+|+|.|.||+||||++-.++.... ..|.++.+++.+
T Consensus 263 ~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlE 303 (505)
T PRK05636 263 RGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLE 303 (505)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEee
Confidence 5688999999999999999999987654 246677777644
No 458
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.70 E-value=0.0015 Score=55.13 Aligned_cols=28 Identities=29% Similarity=0.287 Sum_probs=24.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
.++.++.|.|++||||||+.+.|+-.+.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLER 51 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678999999999999999999997653
No 459
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.70 E-value=0.067 Score=52.36 Aligned_cols=29 Identities=31% Similarity=0.422 Sum_probs=25.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
++.+..++|+|++|+||||+|+.+++.+.
T Consensus 35 ~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 35 GRVAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34566789999999999999999999984
No 460
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.70 E-value=0.0015 Score=53.88 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIE 43 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La 43 (272)
.++.++.|.|++||||||+.+.+.
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 578899999999999999999884
No 461
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.70 E-value=0.0081 Score=55.08 Aligned_cols=30 Identities=27% Similarity=0.150 Sum_probs=25.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQ 49 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~ 49 (272)
.+|.-+.|+|++|+||||+++.+++.+...
T Consensus 131 GkGQR~LIvG~pGtGKTTLl~~la~~i~~~ 160 (380)
T PRK12608 131 GKGQRGLIVAPPRAGKTVLLQQIAAAVAAN 160 (380)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 366678999999999999999999988643
No 462
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.70 E-value=0.0016 Score=53.28 Aligned_cols=27 Identities=30% Similarity=0.287 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.++.|.|++||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998765
No 463
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.69 E-value=0.024 Score=52.27 Aligned_cols=45 Identities=18% Similarity=0.297 Sum_probs=36.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCCCEEEecCcccccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLI--AQGIPAYALDGDNLRNG 64 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~--~~g~~~~~ld~D~i~~~ 64 (272)
.++.+|.|.||.|+||||.-..||.++. ....++.++..|.+|=+
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIG 247 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIG 247 (407)
T ss_pred ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhh
Confidence 3578999999999999998888988876 33456888889988743
No 464
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.69 E-value=0.0015 Score=56.16 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.+|.++.|.|++||||||+.+.|+-.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 478899999999999999999999765
No 465
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.69 E-value=0.0016 Score=55.60 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.++.|.|++||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 478899999999999999999999876
No 466
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.68 E-value=0.0014 Score=55.31 Aligned_cols=27 Identities=30% Similarity=0.379 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.++.|.|++||||||+.+.|+-.+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 478899999999999999999998765
No 467
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.68 E-value=0.0015 Score=59.09 Aligned_cols=41 Identities=20% Similarity=0.320 Sum_probs=29.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
..|.+++|.||+||||||+-|.+|-...-.+ +-.++++..+
T Consensus 27 ~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~-G~I~i~g~~v 67 (338)
T COG3839 27 EDGEFVVLLGPSGCGKSTLLRMIAGLEEPTS-GEILIDGRDV 67 (338)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-ceEEECCEEC
Confidence 4678999999999999999999996543222 2345665443
No 468
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.67 E-value=0.0016 Score=56.18 Aligned_cols=27 Identities=26% Similarity=0.334 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.++.|.|++||||||+.+.|+-.+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 467899999999999999999998765
No 469
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.67 E-value=0.0016 Score=54.86 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.++.|.|++||||||+.+.|+-.+
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999999999765
No 470
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.67 E-value=0.0016 Score=54.70 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.++.|.|++||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999998765
No 471
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.67 E-value=0.0015 Score=55.41 Aligned_cols=27 Identities=22% Similarity=0.288 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.++.|.|++||||||+.+.|+-.+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999999765
No 472
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.66 E-value=0.0015 Score=56.00 Aligned_cols=27 Identities=30% Similarity=0.354 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.++.|.|++||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 478899999999999999999999765
No 473
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.66 E-value=0.0016 Score=55.77 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.++.|.|++||||||+.+.|+-.+
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999999765
No 474
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.66 E-value=0.0017 Score=54.10 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
.++.++.|.|++||||||+.+.|+-.+.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4678999999999999999999998653
No 475
>PRK08760 replicative DNA helicase; Provisional
Probab=96.65 E-value=0.015 Score=55.41 Aligned_cols=40 Identities=15% Similarity=0.232 Sum_probs=33.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHH-cCCCEEEecCc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIA-QGIPAYALDGD 59 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~-~g~~~~~ld~D 59 (272)
+++.+|+|.|.||+||||++-.++..... .|.++.+++.+
T Consensus 227 ~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlE 267 (476)
T PRK08760 227 QPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSME 267 (476)
T ss_pred CCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEecc
Confidence 46789999999999999999999987643 47778777754
No 476
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.65 E-value=0.0017 Score=55.09 Aligned_cols=28 Identities=18% Similarity=0.208 Sum_probs=25.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
.++.++.|.|++||||||+.+.|+..+.
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G~~~ 56 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGLDN 56 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4788999999999999999999997653
No 477
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.65 E-value=0.0017 Score=53.62 Aligned_cols=75 Identities=17% Similarity=0.113 Sum_probs=43.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEE
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIALC 99 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI~ 99 (272)
.++.++.|.|++||||||+.+.|+-.+.... ..+.+++..+.. ......++.- .++...+++.+.....+++.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~-G~i~~~g~~i~~-~~q~~~LSgG-----q~qrv~laral~~~p~lllL 95 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNG-DNDEWDGITPVY-KPQYIDLSGG-----ELQRVAIAAALLRNATFYLF 95 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCC-cEEEECCEEEEE-EcccCCCCHH-----HHHHHHHHHHHhcCCCEEEE
Confidence 4678999999999999999999997653211 223344322111 0011112211 12233456677777777776
Q ss_pred cC
Q psy17388 100 SF 101 (272)
Q Consensus 100 d~ 101 (272)
|-
T Consensus 96 DE 97 (177)
T cd03222 96 DE 97 (177)
T ss_pred EC
Confidence 63
No 478
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.64 E-value=0.002 Score=64.56 Aligned_cols=37 Identities=22% Similarity=0.327 Sum_probs=30.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD 59 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D 59 (272)
.+|..|+|.|+||+||||++++++..+ +.+++.++..
T Consensus 210 ~~~~giLL~GppGtGKT~laraia~~~---~~~~i~i~~~ 246 (733)
T TIGR01243 210 EPPKGVLLYGPPGTGKTLLAKAVANEA---GAYFISINGP 246 (733)
T ss_pred CCCceEEEECCCCCChHHHHHHHHHHh---CCeEEEEecH
Confidence 456789999999999999999999988 5566666653
No 479
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=96.64 E-value=0.0038 Score=54.74 Aligned_cols=39 Identities=21% Similarity=0.300 Sum_probs=35.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
+++|.+.|--|+||||++--|+..|...|.++..+|.|-
T Consensus 2 ~~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dp 40 (270)
T PRK13185 2 ALVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDP 40 (270)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeccC
Confidence 467888899999999999999999999999999999984
No 480
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.64 E-value=0.0018 Score=52.64 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=25.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
.++.++.|.|++||||||+.+.|+-.+.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4788999999999999999999997753
No 481
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.64 E-value=0.0023 Score=63.71 Aligned_cols=35 Identities=26% Similarity=0.289 Sum_probs=27.6
Q ss_pred hhhhhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 12 WLRDFKEGQSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 12 ~~r~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.+|....+.+...++|.|+||+||||+|+++++.+
T Consensus 42 ~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 42 LLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34444444555567999999999999999999987
No 482
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=96.64 E-value=0.0033 Score=56.41 Aligned_cols=38 Identities=26% Similarity=0.401 Sum_probs=34.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
++|+++|.=|+||||+|.+++-.+..+|.++..++.|-
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dp 39 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDP 39 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESST
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCC
Confidence 58999999999999999999999999999999988875
No 483
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.63 E-value=0.0016 Score=54.82 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
++ ++.|.|++||||||+.+.|+-.+
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCCC
Confidence 57 89999999999999999999765
No 484
>PRK09165 replicative DNA helicase; Provisional
Probab=96.63 E-value=0.017 Score=55.38 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
+++.+|+|.|.||+||||++-.++....
T Consensus 215 ~~g~livIaarpg~GKT~~al~ia~~~a 242 (497)
T PRK09165 215 HPSDLIILAGRPSMGKTALATNIAFNAA 242 (497)
T ss_pred CCCceEEEEeCCCCChHHHHHHHHHHHH
Confidence 4678999999999999999988887654
No 485
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.0086 Score=53.44 Aligned_cols=53 Identities=23% Similarity=0.365 Sum_probs=35.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHH
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRA 83 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i 83 (272)
..|++.||.|||||-+|+-||+.| +.++..-|.-.+- +.+|-.++-+..+.++
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~L---nVPFaiADATtLT-----EAGYVGEDVENillkL 150 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKIL---NVPFAIADATTLT-----EAGYVGEDVENILLKL 150 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHh---CCCeeeccccchh-----hccccchhHHHHHHHH
Confidence 469999999999999999999999 5555555543332 2345444434444443
No 486
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.63 E-value=0.0018 Score=54.30 Aligned_cols=27 Identities=22% Similarity=0.210 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.++.|.|++||||||+.+.|+-.+
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999999765
No 487
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.63 E-value=0.0018 Score=55.45 Aligned_cols=28 Identities=25% Similarity=0.197 Sum_probs=25.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
.++.++.|.|++||||||+.+.|+..+.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4788999999999999999999998764
No 488
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.62 E-value=0.0018 Score=54.92 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.++.|.|++||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999765
No 489
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.62 E-value=0.049 Score=49.98 Aligned_cols=30 Identities=27% Similarity=0.329 Sum_probs=26.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLIA 48 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~ 48 (272)
++.+..++|.|++|+||||+|+++++.+..
T Consensus 36 ~~~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 36 NHLAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 455678999999999999999999999843
No 490
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.62 E-value=0.031 Score=55.15 Aligned_cols=29 Identities=31% Similarity=0.454 Sum_probs=25.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
++.+..++|+|++|+||||+|+.|++.|.
T Consensus 35 ~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln 63 (709)
T PRK08691 35 GRLHHAYLLTGTRGVGKTTIARILAKSLN 63 (709)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 34467899999999999999999999984
No 491
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.62 E-value=0.0019 Score=54.50 Aligned_cols=40 Identities=20% Similarity=0.226 Sum_probs=29.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
.++.++.|.|++||||||+.+.|+-.+...+ .-+.+++..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~-G~v~~~g~~ 63 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLRMIAGLEEPTS-GRIYIGGRD 63 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCc-eEEEECCEE
Confidence 4788999999999999999999998763221 234455433
No 492
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.62 E-value=0.12 Score=50.82 Aligned_cols=27 Identities=33% Similarity=0.361 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
-+.-++|+|++|+||||+|+.+++.|.
T Consensus 37 l~~a~Lf~Gp~G~GKttlA~~lAk~L~ 63 (620)
T PRK14948 37 IAPAYLFTGPRGTGKTSSARILAKSLN 63 (620)
T ss_pred CCceEEEECCCCCChHHHHHHHHHHhc
Confidence 345689999999999999999999994
No 493
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.62 E-value=0.0018 Score=53.90 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
.++.++.|.|++||||||+.+.|+-.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999853
No 494
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=96.61 E-value=0.0016 Score=62.10 Aligned_cols=39 Identities=23% Similarity=0.358 Sum_probs=30.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD 59 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D 59 (272)
.+|.++.|.|.|||||||+||.|+..+...+ ....+++.
T Consensus 315 ~~GE~lglVGeSGsGKSTlar~i~gL~~P~~-G~i~~~g~ 353 (539)
T COG1123 315 REGETLGLVGESGSGKSTLARILAGLLPPSS-GSIIFDGQ 353 (539)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-ceEEEeCc
Confidence 4788999999999999999999998875433 23344443
No 495
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.61 E-value=0.002 Score=52.97 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
.++.++.|.|++||||||+.+.|+..+.
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678999999999999999999987653
No 496
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=96.61 E-value=0.0032 Score=56.28 Aligned_cols=37 Identities=19% Similarity=0.289 Sum_probs=33.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
+|.|.|-.|+||||++-.|+..|..+|.++..+|.|-
T Consensus 2 vIav~gKGGvGKTT~a~nLA~~La~~g~rVLlID~Dp 38 (296)
T TIGR02016 2 IIAIYGKGGSGKSFTTTNLSHMMAEMGKRVLQLGCDP 38 (296)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEecC
Confidence 5667799999999999999999999999999999884
No 497
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.60 E-value=0.002 Score=52.92 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=24.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
.++.++.|.|++||||||+.+.|+-.+.
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 4678999999999999999999997653
No 498
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.60 E-value=0.003 Score=63.75 Aligned_cols=35 Identities=26% Similarity=0.252 Sum_probs=29.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD 57 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld 57 (272)
.++..++|.|+||+||||+|++|++.+ +.+++.++
T Consensus 345 ~~~~~lll~GppG~GKT~lAk~iA~~l---~~~~~~i~ 379 (775)
T TIGR00763 345 MKGPILCLVGPPGVGKTSLGKSIAKAL---NRKFVRFS 379 (775)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh---cCCeEEEe
Confidence 355689999999999999999999998 55666554
No 499
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.60 E-value=0.0026 Score=55.77 Aligned_cols=37 Identities=16% Similarity=0.251 Sum_probs=29.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD 57 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld 57 (272)
...+|+|+|++||||||+.++|.+.++..+..++.+.
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iE 162 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIE 162 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEE
T ss_pred cceEEEEECCCccccchHHHHHhhhccccccceEEec
Confidence 3579999999999999999999998875533444444
No 500
>PRK08506 replicative DNA helicase; Provisional
Probab=96.60 E-value=0.028 Score=53.55 Aligned_cols=40 Identities=10% Similarity=0.133 Sum_probs=34.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD 59 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D 59 (272)
+++.+|+|.|.||.||||++-.++......|.++.+++.+
T Consensus 190 ~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlE 229 (472)
T PRK08506 190 NKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLE 229 (472)
T ss_pred CCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCc
Confidence 4678999999999999999999998776667788888765
Done!