Query psy17388
Match_columns 272
No_of_seqs 280 out of 1821
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 21:11:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17388.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17388hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x6v_B Bifunctional 3'-phospho 100.0 9E-53 3.1E-57 403.4 28.3 263 7-271 35-320 (630)
2 3uie_A Adenylyl-sulfate kinase 99.9 7.4E-26 2.5E-30 189.0 20.9 182 14-197 17-199 (200)
3 1m8p_A Sulfate adenylyltransfe 99.9 2.9E-25 9.9E-30 212.5 21.8 180 18-198 392-572 (573)
4 1m7g_A Adenylylsulfate kinase; 99.9 2.3E-24 8E-29 181.3 22.8 187 13-199 16-209 (211)
5 2pez_A Bifunctional 3'-phospho 99.9 6.5E-24 2.2E-28 173.8 23.1 178 19-196 2-179 (179)
6 2yvu_A Probable adenylyl-sulfa 99.9 6E-24 2E-28 175.1 21.9 175 18-192 9-183 (186)
7 1r6x_A ATP:sulfate adenylyltra 99.9 5.5E-24 1.9E-28 192.8 5.1 68 204-271 26-95 (395)
8 2gks_A Bifunctional SAT/APS ki 99.9 5.2E-22 1.8E-26 189.0 18.1 177 19-197 369-545 (546)
9 1v47_A ATP sulfurylase; produc 99.9 4.5E-23 1.5E-27 185.1 5.1 62 205-266 3-64 (349)
10 1jhd_A Sulfate adenylyltransfe 99.9 4.2E-23 1.4E-27 187.9 4.4 63 203-265 27-89 (396)
11 1g8f_A Sulfate adenylyltransfe 99.9 9.1E-23 3.1E-27 191.9 5.2 68 204-271 27-96 (511)
12 3cr8_A Sulfate adenylyltranfer 99.9 7.4E-21 2.5E-25 180.9 17.9 177 20-197 367-544 (552)
13 3cr8_A Sulfate adenylyltranfer 99.9 1E-22 3.6E-27 193.7 5.1 68 204-271 29-96 (552)
14 2gks_A Bifunctional SAT/APS ki 99.9 1.4E-22 4.8E-27 193.0 5.9 68 204-271 4-71 (546)
15 1m8p_A Sulfate adenylyltransfe 99.9 1.7E-22 5.7E-27 193.4 5.0 69 203-271 27-95 (573)
16 3a4m_A L-seryl-tRNA(SEC) kinas 99.8 1.7E-18 5.8E-23 150.2 18.7 164 21-193 3-174 (260)
17 1qhx_A CPT, protein (chloramph 99.8 7.6E-19 2.6E-23 143.0 14.8 159 21-190 2-176 (178)
18 3t61_A Gluconokinase; PSI-biol 99.8 2.3E-18 7.7E-23 143.4 12.4 160 20-195 16-182 (202)
19 2rhm_A Putative kinase; P-loop 99.8 1.4E-17 4.9E-22 136.9 15.4 168 20-192 3-188 (193)
20 1knq_A Gluconate kinase; ALFA/ 99.8 3.1E-17 1.1E-21 133.2 17.1 160 20-192 6-173 (175)
21 4eun_A Thermoresistant glucoki 99.8 1.5E-17 5.2E-22 138.4 14.4 164 17-193 24-194 (200)
22 2vli_A Antibiotic resistance p 99.7 8.3E-18 2.8E-22 137.3 8.5 164 20-193 3-172 (183)
23 1ly1_A Polynucleotide kinase; 99.7 9E-18 3.1E-22 136.5 8.5 161 22-192 2-172 (181)
24 3vaa_A Shikimate kinase, SK; s 99.7 1.4E-16 4.9E-21 132.3 8.3 164 20-193 23-196 (199)
25 3trf_A Shikimate kinase, SK; a 99.6 1.3E-16 4.3E-21 130.7 3.9 157 21-193 4-175 (185)
26 3kb2_A SPBC2 prophage-derived 99.6 5.2E-15 1.8E-19 119.1 12.9 146 23-192 2-166 (173)
27 1tev_A UMP-CMP kinase; ploop, 99.6 8.8E-15 3E-19 120.0 14.2 165 21-194 2-196 (196)
28 1qf9_A UMP/CMP kinase, protein 99.6 1.7E-14 5.7E-19 118.1 12.9 166 20-194 4-193 (194)
29 3lw7_A Adenylate kinase relate 99.6 3.7E-15 1.3E-19 119.9 8.6 158 23-192 2-176 (179)
30 3hdt_A Putative kinase; struct 99.6 1.5E-14 5.2E-19 122.6 12.2 163 21-196 13-222 (223)
31 2p5t_B PEZT; postsegregational 99.6 2.8E-14 9.4E-19 123.0 13.6 122 18-142 28-157 (253)
32 2pt5_A Shikimate kinase, SK; a 99.6 5.1E-15 1.8E-19 119.0 7.8 156 23-195 1-166 (168)
33 4edh_A DTMP kinase, thymidylat 99.6 6.9E-14 2.4E-18 117.7 15.0 172 20-192 4-206 (213)
34 1via_A Shikimate kinase; struc 99.6 2.4E-15 8.1E-20 122.2 5.4 155 24-194 6-168 (175)
35 1nks_A Adenylate kinase; therm 99.5 1E-14 3.5E-19 119.4 8.7 163 23-190 2-193 (194)
36 3fdi_A Uncharacterized protein 99.5 2.1E-14 7.1E-19 119.8 10.5 157 21-193 5-199 (201)
37 2wwf_A Thymidilate kinase, put 99.5 2.9E-14 9.9E-19 118.8 11.4 170 20-193 8-200 (212)
38 1kag_A SKI, shikimate kinase I 99.5 2.3E-15 7.9E-20 121.7 4.0 161 22-192 4-172 (173)
39 3zvl_A Bifunctional polynucleo 99.5 2.3E-14 7.9E-19 132.2 11.0 104 19-143 255-358 (416)
40 1e6c_A Shikimate kinase; phosp 99.5 6.6E-15 2.3E-19 118.8 6.3 153 23-192 3-170 (173)
41 2pbr_A DTMP kinase, thymidylat 99.5 1E-13 3.4E-18 113.7 13.2 164 23-192 1-191 (195)
42 1ltq_A Polynucleotide kinase; 99.5 8.1E-14 2.8E-18 122.6 13.3 116 22-142 2-126 (301)
43 2plr_A DTMP kinase, probable t 99.5 7.9E-14 2.7E-18 115.9 12.0 171 20-192 2-207 (213)
44 3r20_A Cytidylate kinase; stru 99.5 5.3E-14 1.8E-18 119.8 10.9 158 20-193 7-228 (233)
45 2c95_A Adenylate kinase 1; tra 99.5 1.1E-13 3.9E-18 113.7 12.2 160 20-192 7-193 (196)
46 2cdn_A Adenylate kinase; phosp 99.5 9E-14 3.1E-18 115.3 11.7 166 19-191 17-200 (201)
47 4tmk_A Protein (thymidylate ki 99.5 3.9E-13 1.3E-17 113.1 15.6 171 21-192 2-206 (213)
48 2iyv_A Shikimate kinase, SK; t 99.5 2.4E-15 8.2E-20 123.0 2.0 155 23-192 3-168 (184)
49 3iij_A Coilin-interacting nucl 99.5 1.9E-15 6.6E-20 123.2 0.3 153 20-192 9-173 (180)
50 4hlc_A DTMP kinase, thymidylat 99.5 4.9E-13 1.7E-17 111.8 14.9 169 22-192 2-200 (205)
51 4eaq_A DTMP kinase, thymidylat 99.5 5E-13 1.7E-17 113.7 14.7 171 20-192 24-224 (229)
52 1nn5_A Similar to deoxythymidy 99.5 7E-13 2.4E-17 110.5 15.4 168 20-192 7-200 (215)
53 3nwj_A ATSK2; P loop, shikimat 99.5 4.6E-14 1.6E-18 121.6 8.3 158 22-193 48-237 (250)
54 3v9p_A DTMP kinase, thymidylat 99.5 9.7E-14 3.3E-18 117.9 10.1 170 20-192 23-226 (227)
55 3lv8_A DTMP kinase, thymidylat 99.5 4E-13 1.4E-17 114.7 14.0 173 19-192 24-228 (236)
56 3cm0_A Adenylate kinase; ATP-b 99.5 9.4E-14 3.2E-18 113.4 8.5 162 20-191 2-185 (186)
57 1kht_A Adenylate kinase; phosp 99.5 1.2E-13 4.2E-18 112.9 9.1 41 21-61 2-42 (192)
58 1g8f_A Sulfate adenylyltransfe 99.5 2.1E-13 7.1E-18 128.3 11.8 118 19-198 392-511 (511)
59 3ld9_A DTMP kinase, thymidylat 99.5 2.1E-13 7.3E-18 115.4 9.9 175 11-192 10-215 (223)
60 2bwj_A Adenylate kinase 5; pho 99.5 2.2E-13 7.5E-18 112.2 9.5 158 21-192 11-196 (199)
61 3be4_A Adenylate kinase; malar 99.5 4.3E-13 1.5E-17 112.8 11.3 118 20-142 3-132 (217)
62 2z0h_A DTMP kinase, thymidylat 99.4 4.4E-13 1.5E-17 110.2 11.1 163 23-192 1-191 (197)
63 3hjn_A DTMP kinase, thymidylat 99.4 1.2E-12 4E-17 108.8 13.0 165 23-193 1-192 (197)
64 3umf_A Adenylate kinase; rossm 99.4 5.7E-13 1.9E-17 112.3 10.5 166 20-195 27-216 (217)
65 1gvn_B Zeta; postsegregational 99.4 1.1E-12 3.9E-17 115.1 12.9 121 19-142 30-162 (287)
66 1ukz_A Uridylate kinase; trans 99.4 2E-12 6.9E-17 107.1 13.3 164 20-192 13-201 (203)
67 2bdt_A BH3686; alpha-beta prot 99.4 2.8E-12 9.5E-17 105.1 13.7 158 22-187 2-168 (189)
68 2axn_A 6-phosphofructo-2-kinas 99.4 9E-13 3.1E-17 124.8 11.7 123 20-142 33-168 (520)
69 1zuh_A Shikimate kinase; alpha 99.4 4.6E-14 1.6E-18 113.7 2.2 151 22-190 7-167 (168)
70 2jaq_A Deoxyguanosine kinase; 99.4 2.7E-12 9.1E-17 105.9 12.6 71 121-192 124-200 (205)
71 1y63_A LMAJ004144AAA protein; 99.4 2E-13 7E-18 111.8 5.7 150 20-192 8-177 (184)
72 1aky_A Adenylate kinase; ATP:A 99.4 6.3E-13 2.2E-17 111.8 8.4 118 20-142 2-132 (220)
73 3fb4_A Adenylate kinase; psych 99.4 1.8E-12 6E-17 108.5 10.9 114 23-142 1-127 (216)
74 1zak_A Adenylate kinase; ATP:A 99.4 2.3E-12 8E-17 108.4 11.6 111 21-142 4-129 (222)
75 2xb4_A Adenylate kinase; ATP-b 99.4 2.9E-12 9.9E-17 108.2 12.0 114 23-142 1-126 (223)
76 4e22_A Cytidylate kinase; P-lo 99.3 2.7E-12 9.2E-17 110.5 9.6 38 20-62 25-62 (252)
77 3ake_A Cytidylate kinase; CMP 99.3 4.4E-12 1.5E-16 105.1 10.4 35 24-63 4-38 (208)
78 3dl0_A Adenylate kinase; phosp 99.3 2.5E-12 8.6E-17 107.6 8.6 109 23-142 1-127 (216)
79 2grj_A Dephospho-COA kinase; T 99.3 4.4E-12 1.5E-16 105.0 9.8 143 21-192 11-186 (192)
80 3tlx_A Adenylate kinase 2; str 99.3 8.8E-12 3E-16 106.7 12.0 118 19-142 26-156 (243)
81 1cke_A CK, MSSA, protein (cyti 99.3 1.4E-11 4.8E-16 103.5 12.0 37 22-63 5-41 (227)
82 1uj2_A Uridine-cytidine kinase 99.3 3.7E-12 1.3E-16 109.5 8.2 166 18-193 18-234 (252)
83 1ak2_A Adenylate kinase isoenz 99.3 1.1E-11 3.6E-16 105.3 10.5 111 20-142 14-143 (233)
84 2h92_A Cytidylate kinase; ross 99.3 4.3E-12 1.5E-16 106.3 7.2 37 21-62 2-38 (219)
85 3tmk_A Thymidylate kinase; pho 99.3 1.5E-11 5.3E-16 103.5 10.1 166 21-192 4-202 (216)
86 2qor_A Guanylate kinase; phosp 99.3 2.7E-13 9.2E-18 112.9 -0.8 164 20-193 10-197 (204)
87 2v54_A DTMP kinase, thymidylat 99.3 1.5E-11 5E-16 101.6 9.7 163 21-192 3-190 (204)
88 1zp6_A Hypothetical protein AT 99.3 1.5E-11 5.2E-16 100.6 9.5 166 20-195 7-178 (191)
89 2f6r_A COA synthase, bifunctio 99.3 1.7E-11 5.7E-16 107.3 10.1 152 20-192 73-268 (281)
90 3sr0_A Adenylate kinase; phosp 99.3 4.3E-11 1.5E-15 100.1 11.7 114 23-142 1-124 (206)
91 1q3t_A Cytidylate kinase; nucl 99.3 6E-11 2E-15 100.8 12.7 38 20-62 14-51 (236)
92 1vht_A Dephospho-COA kinase; s 99.2 4.3E-12 1.5E-16 106.4 4.4 151 21-192 3-194 (218)
93 1jjv_A Dephospho-COA kinase; P 99.2 7.2E-12 2.5E-16 104.0 5.0 149 23-192 3-196 (206)
94 1p5z_B DCK, deoxycytidine kina 99.2 4.6E-12 1.6E-16 109.5 1.7 71 121-192 174-258 (263)
95 2if2_A Dephospho-COA kinase; a 99.2 2.4E-11 8.3E-16 100.6 5.9 65 124-194 126-193 (204)
96 1uf9_A TT1252 protein; P-loop, 99.1 1.5E-11 5.2E-16 101.4 3.7 152 20-192 6-193 (203)
97 4i1u_A Dephospho-COA kinase; s 99.1 1.8E-10 6.2E-15 96.3 10.1 151 22-192 9-201 (210)
98 2ze6_A Isopentenyl transferase 99.1 1.9E-10 6.4E-15 99.1 10.3 110 23-143 2-139 (253)
99 1e4v_A Adenylate kinase; trans 99.1 1.3E-10 4.3E-15 97.3 8.4 111 24-142 2-123 (214)
100 2qt1_A Nicotinamide riboside k 99.1 6.9E-11 2.3E-15 98.2 6.4 157 20-192 19-205 (207)
101 3tr0_A Guanylate kinase, GMP k 99.1 1.4E-09 4.7E-14 89.8 13.6 157 20-193 5-187 (205)
102 1bif_A 6-phosphofructo-2-kinas 99.1 8.7E-10 3E-14 103.1 13.8 121 20-140 37-170 (469)
103 1zd8_A GTP:AMP phosphotransfer 99.1 1.8E-10 6E-15 97.2 7.9 109 20-142 5-128 (227)
104 2ocp_A DGK, deoxyguanosine kin 99.0 8.6E-11 2.9E-15 100.1 2.6 27 21-47 1-27 (241)
105 2j41_A Guanylate kinase; GMP, 99.0 2E-09 6.8E-14 88.8 10.7 158 20-193 4-187 (207)
106 3a8t_A Adenylate isopentenyltr 99.0 3.1E-09 1.1E-13 94.8 11.1 117 20-143 38-195 (339)
107 3a00_A Guanylate kinase, GMP k 99.0 3E-09 1E-13 87.0 10.0 160 22-193 1-185 (186)
108 3tau_A Guanylate kinase, GMP k 98.9 6.5E-10 2.2E-14 92.6 5.3 160 20-193 6-189 (208)
109 2vp4_A Deoxynucleoside kinase; 98.9 1.9E-09 6.4E-14 91.2 6.6 71 121-192 146-224 (230)
110 1gtv_A TMK, thymidylate kinase 98.8 7.6E-10 2.6E-14 91.9 1.8 164 23-188 1-209 (214)
111 3gmt_A Adenylate kinase; ssgci 98.8 1.6E-08 5.4E-13 85.6 8.5 107 22-142 8-131 (230)
112 1kgd_A CASK, peripheral plasma 98.8 4.6E-09 1.6E-13 85.4 5.0 27 20-46 3-29 (180)
113 1ex7_A Guanylate kinase; subst 98.7 2E-08 6.9E-13 82.4 7.4 154 24-192 3-184 (186)
114 1rz3_A Hypothetical protein rb 98.7 1.6E-08 5.4E-13 83.7 6.4 45 19-63 19-63 (201)
115 3ch4_B Pmkase, phosphomevalona 98.7 2.3E-07 8E-12 76.7 13.3 158 19-190 8-187 (202)
116 4gp7_A Metallophosphoesterase; 98.7 1.1E-07 3.8E-12 76.5 10.7 115 20-142 7-121 (171)
117 3asz_A Uridine kinase; cytidin 98.7 5E-08 1.7E-12 80.8 8.2 41 19-62 3-43 (211)
118 3crm_A TRNA delta(2)-isopenten 98.7 1.5E-07 5.3E-12 83.4 11.7 35 22-61 5-39 (323)
119 3lnc_A Guanylate kinase, GMP k 98.7 5.8E-08 2E-12 81.8 8.7 158 20-193 25-209 (231)
120 1s96_A Guanylate kinase, GMP k 98.7 1.3E-07 4.5E-12 79.5 10.8 162 20-193 14-198 (219)
121 3czq_A Putative polyphosphate 98.6 2.6E-08 9E-13 87.3 4.3 109 20-142 84-211 (304)
122 2jeo_A Uridine-cytidine kinase 98.5 2.1E-07 7.2E-12 79.2 8.1 44 20-63 23-71 (245)
123 3exa_A TRNA delta(2)-isopenten 98.5 2E-06 7E-11 75.8 14.3 36 21-61 2-37 (322)
124 3ney_A 55 kDa erythrocyte memb 98.5 2.3E-06 8E-11 70.6 13.3 33 14-46 11-43 (197)
125 2bbw_A Adenylate kinase 4, AK4 98.5 4.3E-07 1.5E-11 77.3 8.2 27 20-46 25-51 (246)
126 1p6x_A Thymidine kinase; P-loo 98.4 2.6E-07 8.9E-12 82.4 6.4 28 21-48 6-33 (334)
127 3foz_A TRNA delta(2)-isopenten 98.4 4.9E-06 1.7E-10 73.2 13.7 36 20-60 8-43 (316)
128 3tqc_A Pantothenate kinase; bi 98.3 6.2E-07 2.1E-11 79.6 6.0 44 19-62 89-134 (321)
129 1a7j_A Phosphoribulokinase; tr 98.3 4.3E-07 1.5E-11 79.5 3.7 43 21-63 4-46 (290)
130 3d3q_A TRNA delta(2)-isopenten 98.2 3.6E-06 1.2E-10 75.1 9.0 34 23-61 8-41 (340)
131 3czp_A Putative polyphosphate 98.2 2.1E-06 7.3E-11 80.4 7.6 111 19-143 40-169 (500)
132 1of1_A Thymidine kinase; trans 98.2 9E-06 3.1E-10 73.4 10.9 31 20-50 47-77 (376)
133 1e2k_A Thymidine kinase; trans 98.2 4.6E-06 1.6E-10 74.2 8.3 30 21-50 3-32 (331)
134 1lvg_A Guanylate kinase, GMP k 98.1 2.2E-05 7.4E-10 64.5 11.2 26 21-46 3-28 (198)
135 3czp_A Putative polyphosphate 98.1 5.2E-06 1.8E-10 77.7 7.8 110 20-143 298-426 (500)
136 1osn_A Thymidine kinase, VZV-T 98.0 3.9E-06 1.3E-10 74.9 4.9 31 20-50 10-41 (341)
137 3eph_A TRNA isopentenyltransfe 97.9 3.5E-05 1.2E-09 70.2 9.7 34 22-60 2-35 (409)
138 3c8u_A Fructokinase; YP_612366 97.9 1.2E-05 4.1E-10 66.4 6.2 42 19-60 19-60 (208)
139 3syl_A Protein CBBX; photosynt 97.9 0.00053 1.8E-08 59.5 16.7 42 20-61 65-110 (309)
140 3bos_A Putative DNA replicatio 97.9 1.6E-05 5.4E-10 66.2 6.3 44 20-63 50-93 (242)
141 3rhf_A Putative polyphosphate 97.9 1.9E-05 6.3E-10 68.4 6.4 162 20-195 73-270 (289)
142 1xjc_A MOBB protein homolog; s 97.9 1.9E-05 6.4E-10 63.5 5.8 39 21-59 3-41 (169)
143 1vma_A Cell division protein F 97.8 1.9E-05 6.6E-10 69.5 6.0 43 20-62 102-144 (306)
144 1dek_A Deoxynucleoside monopho 97.8 0.00019 6.5E-09 61.0 11.7 67 124-192 170-240 (241)
145 2kjq_A DNAA-related protein; s 97.8 1.8E-05 6.2E-10 62.2 4.8 42 21-62 35-76 (149)
146 3dm5_A SRP54, signal recogniti 97.8 2.5E-05 8.6E-10 72.0 6.3 43 21-63 99-141 (443)
147 1odf_A YGR205W, hypothetical 3 97.8 1.7E-05 5.8E-10 69.3 4.6 44 19-62 28-74 (290)
148 3ec2_A DNA replication protein 97.7 2.1E-05 7.2E-10 63.2 4.3 40 21-60 37-77 (180)
149 3t15_A Ribulose bisphosphate c 97.7 2.6E-05 9E-10 68.0 5.1 39 20-61 34-72 (293)
150 3kl4_A SRP54, signal recogniti 97.7 3E-05 1E-09 71.4 5.6 44 20-63 95-138 (433)
151 1sq5_A Pantothenate kinase; P- 97.7 3.8E-05 1.3E-09 67.5 5.7 42 20-61 78-121 (308)
152 1zu4_A FTSY; GTPase, signal re 97.7 5.4E-05 1.8E-09 67.1 6.6 43 20-62 103-145 (320)
153 1jbk_A CLPB protein; beta barr 97.7 5.1E-05 1.7E-09 60.4 5.9 31 18-48 39-69 (195)
154 2px0_A Flagellar biosynthesis 97.7 4.9E-05 1.7E-09 66.6 6.1 43 20-62 103-146 (296)
155 4b4t_M 26S protease regulatory 97.7 0.00014 4.9E-09 66.9 9.1 41 20-63 213-253 (434)
156 1lv7_A FTSH; alpha/beta domain 97.7 5.8E-05 2E-09 64.1 6.0 40 21-63 44-83 (257)
157 3e70_C DPA, signal recognition 97.6 6.3E-05 2.2E-09 66.8 6.2 44 19-62 126-169 (328)
158 2w58_A DNAI, primosome compone 97.6 5.5E-05 1.9E-09 61.8 5.4 38 23-60 55-92 (202)
159 1rj9_A FTSY, signal recognitio 97.6 7.2E-05 2.5E-09 65.8 6.4 43 20-62 100-142 (304)
160 2qz4_A Paraplegin; AAA+, SPG7, 97.6 6.6E-05 2.2E-09 63.6 5.8 40 20-62 37-76 (262)
161 1yrb_A ATP(GTP)binding protein 97.6 8.1E-05 2.8E-09 63.2 6.0 41 19-60 11-51 (262)
162 3b9q_A Chloroplast SRP recepto 97.6 9.7E-05 3.3E-09 64.9 6.7 43 20-62 98-140 (302)
163 2w0m_A SSO2452; RECA, SSPF, un 97.6 7.8E-05 2.7E-09 61.7 5.6 41 20-60 21-61 (235)
164 2p65_A Hypothetical protein PF 97.6 6.5E-05 2.2E-09 59.7 4.8 29 20-48 41-69 (187)
165 4b4t_L 26S protease subunit RP 97.6 0.00026 8.8E-09 65.2 9.2 41 20-63 213-253 (437)
166 2xxa_A Signal recognition part 97.6 0.00011 3.9E-09 67.7 6.8 44 20-63 98-142 (433)
167 4b4t_K 26S protease regulatory 97.5 0.00033 1.1E-08 64.4 9.6 40 20-62 204-243 (428)
168 4b4t_J 26S protease regulatory 97.5 0.00025 8.6E-09 64.5 8.6 41 20-63 180-220 (405)
169 2orw_A Thymidine kinase; TMTK, 97.5 9.7E-05 3.3E-09 60.0 5.3 36 21-56 2-37 (184)
170 2dr3_A UPF0273 protein PH0284; 97.5 0.00011 3.8E-09 61.5 5.9 41 20-60 21-61 (247)
171 2yhs_A FTSY, cell division pro 97.5 0.00013 4.3E-09 68.2 6.7 43 20-62 291-333 (503)
172 4b4t_I 26S protease regulatory 97.5 0.00028 9.5E-09 64.7 8.8 41 20-63 214-254 (437)
173 2og2_A Putative signal recogni 97.5 0.00014 4.8E-09 65.4 6.7 43 20-62 155-197 (359)
174 2v3c_C SRP54, signal recogniti 97.5 5.9E-05 2E-09 69.6 4.2 44 20-63 97-140 (432)
175 4a1f_A DNAB helicase, replicat 97.5 0.00069 2.4E-08 60.4 10.8 41 20-60 44-84 (338)
176 2j37_W Signal recognition part 97.5 0.00011 3.9E-09 68.8 6.0 44 20-63 99-142 (504)
177 2b8t_A Thymidine kinase; deoxy 97.5 0.00014 4.9E-09 61.0 6.0 37 20-56 10-46 (223)
178 2r8r_A Sensor protein; KDPD, P 97.5 0.00016 5.4E-09 60.7 6.1 38 23-60 7-44 (228)
179 2chg_A Replication factor C sm 97.5 0.00019 6.4E-09 58.5 6.5 30 20-49 36-65 (226)
180 4b4t_H 26S protease regulatory 97.5 0.00036 1.2E-08 64.5 8.9 41 20-63 241-281 (467)
181 3h4m_A Proteasome-activating n 97.5 8.6E-05 2.9E-09 63.9 4.5 39 20-61 49-87 (285)
182 1np6_A Molybdopterin-guanine d 97.5 0.00014 4.9E-09 58.6 5.4 36 22-57 6-41 (174)
183 1d2n_A N-ethylmaleimide-sensit 97.5 0.00015 5E-09 62.2 5.8 37 19-58 61-97 (272)
184 2cvh_A DNA repair and recombin 97.4 0.00011 3.9E-09 60.4 4.8 38 20-60 18-55 (220)
185 3b9p_A CG5977-PA, isoform A; A 97.4 9.8E-05 3.4E-09 64.0 4.6 39 20-61 52-90 (297)
186 3hr8_A Protein RECA; alpha and 97.4 0.00017 6E-09 64.7 6.2 41 21-61 60-100 (356)
187 1ls1_A Signal recognition part 97.4 0.0002 6.9E-09 62.6 6.5 42 21-62 97-138 (295)
188 3p32_A Probable GTPase RV1496/ 97.4 0.00015 5.3E-09 64.9 5.8 41 19-59 76-116 (355)
189 1j8m_F SRP54, signal recogniti 97.4 0.00016 5.4E-09 63.4 5.7 42 22-63 98-139 (297)
190 3cf0_A Transitional endoplasmi 97.4 0.00011 3.7E-09 64.3 4.6 38 20-60 47-84 (301)
191 1xx6_A Thymidine kinase; NESG, 97.4 0.00024 8.1E-09 58.2 6.3 37 20-56 6-42 (191)
192 3bh0_A DNAB-like replicative h 97.4 0.0006 2.1E-08 60.0 9.4 40 20-59 66-105 (315)
193 1l8q_A Chromosomal replication 97.4 0.00013 4.5E-09 64.1 4.9 41 21-61 36-76 (324)
194 3end_A Light-independent proto 97.4 0.00018 6.2E-09 62.8 5.7 43 18-60 37-79 (307)
195 1ofh_A ATP-dependent HSL prote 97.4 0.00014 4.7E-09 63.1 4.9 40 20-62 48-87 (310)
196 2ehv_A Hypothetical protein PH 97.4 0.00019 6.6E-09 60.1 5.6 41 20-60 28-69 (251)
197 1cr0_A DNA primase/helicase; R 97.4 0.00021 7.2E-09 62.0 6.0 40 20-59 33-73 (296)
198 4fcw_A Chaperone protein CLPB; 97.4 0.00014 4.9E-09 63.2 4.9 40 22-61 47-86 (311)
199 3u61_B DNA polymerase accessor 97.4 0.00043 1.5E-08 60.7 8.0 37 19-58 45-81 (324)
200 1in4_A RUVB, holliday junction 97.4 0.00017 5.9E-09 64.0 5.4 36 20-58 49-84 (334)
201 2q6t_A DNAB replication FORK h 97.4 0.0015 5.2E-08 60.2 12.0 40 20-59 198-238 (444)
202 2ffh_A Protein (FFH); SRP54, s 97.4 0.00023 7.7E-09 65.4 6.2 43 21-63 97-139 (425)
203 3eie_A Vacuolar protein sortin 97.4 0.00017 5.8E-09 63.6 5.2 39 20-61 49-87 (322)
204 2x8a_A Nuclear valosin-contain 97.4 0.00013 4.6E-09 63.0 4.4 34 25-61 47-80 (274)
205 2qby_B CDC6 homolog 3, cell di 97.3 0.00019 6.4E-09 64.2 5.4 40 18-57 41-88 (384)
206 3n70_A Transport activator; si 97.3 8.4E-05 2.9E-09 57.7 2.6 39 20-59 22-60 (145)
207 3aez_A Pantothenate kinase; tr 97.3 0.00015 5.1E-09 64.0 4.5 43 19-61 87-131 (312)
208 3zq6_A Putative arsenical pump 97.3 0.00033 1.1E-08 61.9 6.7 38 23-60 15-52 (324)
209 2qmh_A HPR kinase/phosphorylas 97.3 0.00012 4E-09 60.4 3.3 26 21-46 33-58 (205)
210 2r2a_A Uncharacterized protein 97.3 0.0002 7E-09 58.9 4.7 42 20-61 3-50 (199)
211 3hws_A ATP-dependent CLP prote 97.3 0.00017 5.8E-09 64.6 4.5 35 21-58 50-84 (363)
212 1g41_A Heat shock protein HSLU 97.3 0.00015 5.2E-09 66.9 4.3 39 21-62 49-87 (444)
213 2www_A Methylmalonic aciduria 97.3 0.0004 1.4E-08 62.1 6.8 40 20-59 72-111 (349)
214 2ga8_A Hypothetical 39.9 kDa p 97.3 0.0001 3.5E-09 66.0 2.9 27 21-47 23-49 (359)
215 1znw_A Guanylate kinase, GMP k 97.3 0.00013 4.5E-09 60.0 3.4 27 20-46 18-44 (207)
216 2qby_A CDC6 homolog 1, cell di 97.3 0.00022 7.5E-09 63.4 5.1 40 19-58 42-84 (386)
217 2qgz_A Helicase loader, putati 97.3 0.0003 1E-08 61.8 5.8 40 22-61 152-192 (308)
218 2zr9_A Protein RECA, recombina 97.3 0.00029 1E-08 63.0 5.8 40 21-60 60-99 (349)
219 1u94_A RECA protein, recombina 97.3 0.00032 1.1E-08 63.0 5.9 40 21-60 62-101 (356)
220 2v1u_A Cell division control p 97.3 0.00019 6.6E-09 63.9 4.4 41 19-59 41-87 (387)
221 3te6_A Regulatory protein SIR3 97.3 0.00018 6.3E-09 63.5 4.1 35 14-48 37-71 (318)
222 1um8_A ATP-dependent CLP prote 97.2 0.00021 7.3E-09 64.2 4.5 37 21-60 71-107 (376)
223 1xwi_A SKD1 protein; VPS4B, AA 97.2 0.00024 8E-09 62.8 4.7 40 20-61 43-82 (322)
224 2r6a_A DNAB helicase, replicat 97.2 0.0022 7.5E-08 59.3 11.4 40 20-59 201-241 (454)
225 1z6g_A Guanylate kinase; struc 97.2 0.00015 5.1E-09 60.4 3.2 27 20-46 21-47 (218)
226 3bgw_A DNAB-like replicative h 97.2 0.0022 7.7E-08 59.1 11.4 40 20-59 195-234 (444)
227 1ye8_A Protein THEP1, hypothet 97.2 0.0002 7E-09 57.8 3.8 24 23-46 1-24 (178)
228 3d8b_A Fidgetin-like protein 1 97.2 0.00022 7.5E-09 63.9 4.3 39 20-61 115-153 (357)
229 1fnn_A CDC6P, cell division co 97.2 0.0003 1E-08 62.9 5.1 40 19-58 39-81 (389)
230 2eyu_A Twitching motility prot 97.2 0.00042 1.4E-08 59.5 5.8 41 20-61 23-64 (261)
231 2r62_A Cell division protease 97.2 0.00011 3.7E-09 62.7 2.1 38 22-62 44-81 (268)
232 1c9k_A COBU, adenosylcobinamid 97.2 0.00016 5.6E-09 58.6 3.0 33 24-60 1-33 (180)
233 4a74_A DNA repair and recombin 97.2 0.00029 1E-08 58.2 4.6 41 20-60 23-69 (231)
234 2qp9_X Vacuolar protein sortin 97.2 0.00029 1E-08 63.1 4.7 39 20-61 82-120 (355)
235 2j9r_A Thymidine kinase; TK1, 97.2 0.00063 2.1E-08 56.6 6.3 37 20-56 26-62 (214)
236 3cio_A ETK, tyrosine-protein k 97.2 0.00056 1.9E-08 59.8 6.3 45 19-63 101-146 (299)
237 1htw_A HI0065; nucleotide-bind 97.2 0.00027 9.4E-09 56.0 4.0 28 20-47 31-58 (158)
238 2c9o_A RUVB-like 1; hexameric 97.2 0.00037 1.3E-08 64.5 5.3 40 21-61 62-101 (456)
239 1kjw_A Postsynaptic density pr 97.2 0.0026 8.8E-08 55.5 10.3 95 87-193 187-282 (295)
240 3pfi_A Holliday junction ATP-d 97.1 0.00032 1.1E-08 61.8 4.5 37 20-59 53-89 (338)
241 3bfv_A CAPA1, CAPB2, membrane 97.1 0.00068 2.3E-08 58.4 6.4 44 20-63 80-124 (271)
242 3vfd_A Spastin; ATPase, microt 97.1 0.00036 1.2E-08 63.1 4.8 40 20-62 146-185 (389)
243 2p67_A LAO/AO transport system 97.1 0.00062 2.1E-08 60.6 6.2 42 19-60 53-94 (341)
244 1ixz_A ATP-dependent metallopr 97.1 0.00035 1.2E-08 59.1 4.4 34 24-60 51-84 (254)
245 2ce7_A Cell division protein F 97.1 0.00051 1.8E-08 64.0 5.7 39 21-62 48-86 (476)
246 2f1r_A Molybdopterin-guanine d 97.1 0.00032 1.1E-08 56.4 3.7 31 23-53 3-33 (171)
247 3iqw_A Tail-anchored protein t 97.1 0.00054 1.8E-08 61.0 5.6 42 18-59 12-53 (334)
248 1sxj_A Activator 1 95 kDa subu 97.1 0.00046 1.6E-08 64.9 5.3 37 21-60 76-112 (516)
249 1n0w_A DNA repair protein RAD5 97.1 0.00039 1.3E-08 58.0 4.3 41 20-60 22-68 (243)
250 1njg_A DNA polymerase III subu 97.1 0.0004 1.4E-08 57.1 4.3 28 20-47 43-70 (250)
251 1q57_A DNA primase/helicase; d 97.1 0.0037 1.3E-07 58.4 11.3 41 20-60 240-281 (503)
252 3ug7_A Arsenical pump-driving 97.1 0.00085 2.9E-08 60.0 6.7 41 20-60 24-64 (349)
253 2bjv_A PSP operon transcriptio 97.1 0.0003 1E-08 59.9 3.5 42 20-61 27-68 (265)
254 1xp8_A RECA protein, recombina 97.1 0.00065 2.2E-08 61.2 5.8 40 21-60 73-112 (366)
255 1hqc_A RUVB; extended AAA-ATPa 97.1 0.00041 1.4E-08 60.6 4.4 37 20-59 36-72 (324)
256 3cf2_A TER ATPase, transitiona 97.0 0.0008 2.7E-08 66.4 6.5 39 20-61 236-274 (806)
257 2qm8_A GTPase/ATPase; G protei 97.0 0.00079 2.7E-08 59.9 5.9 41 19-59 52-92 (337)
258 2vhj_A Ntpase P4, P4; non- hyd 97.0 0.00065 2.2E-08 60.1 5.1 35 21-58 122-156 (331)
259 1nlf_A Regulatory protein REPA 97.0 0.00081 2.8E-08 57.8 5.7 27 21-47 29-55 (279)
260 3tqf_A HPR(Ser) kinase; transf 97.0 0.00054 1.8E-08 55.1 4.1 35 21-61 15-49 (181)
261 2woo_A ATPase GET3; tail-ancho 97.0 0.00093 3.2E-08 59.2 5.9 40 21-60 18-57 (329)
262 3la6_A Tyrosine-protein kinase 97.0 0.001 3.5E-08 57.8 6.1 44 20-63 90-134 (286)
263 3kjh_A CO dehydrogenase/acetyl 97.0 0.00041 1.4E-08 58.0 3.5 36 25-60 3-38 (254)
264 1iy2_A ATP-dependent metallopr 97.0 0.00057 2E-08 58.7 4.4 33 24-59 75-107 (278)
265 2ph1_A Nucleotide-binding prot 97.0 0.0013 4.3E-08 56.1 6.4 41 22-62 19-59 (262)
266 2z4s_A Chromosomal replication 97.0 0.00072 2.4E-08 62.4 5.2 39 22-60 130-170 (440)
267 2v9p_A Replication protein E1; 96.9 0.00055 1.9E-08 60.1 4.1 27 20-46 124-150 (305)
268 2wsm_A Hydrogenase expression/ 96.9 0.00063 2.2E-08 55.9 4.3 39 20-59 28-66 (221)
269 2zts_A Putative uncharacterize 96.9 0.001 3.5E-08 55.5 5.6 40 20-59 28-68 (251)
270 1svm_A Large T antigen; AAA+ f 96.9 0.00058 2E-08 61.8 4.2 28 19-46 166-193 (377)
271 3tif_A Uncharacterized ABC tra 96.9 0.00046 1.6E-08 58.2 3.2 27 20-46 29-55 (235)
272 2woj_A ATPase GET3; tail-ancho 96.9 0.0011 3.7E-08 59.4 5.8 41 20-60 16-58 (354)
273 3io3_A DEHA2D07832P; chaperone 96.9 0.0011 3.9E-08 59.2 5.9 42 18-59 14-57 (348)
274 3pvs_A Replication-associated 96.9 0.00058 2E-08 63.1 4.0 41 14-57 42-82 (447)
275 3uk6_A RUVB-like 2; hexameric 96.9 0.00069 2.4E-08 60.3 4.3 27 21-47 69-95 (368)
276 1ihu_A Arsenical pump-driving 96.9 0.0012 4E-08 63.1 6.1 41 20-60 6-46 (589)
277 2afh_E Nitrogenase iron protei 96.9 0.0011 3.7E-08 57.3 5.4 39 23-61 3-41 (289)
278 3m6a_A ATP-dependent protease 96.9 0.00097 3.3E-08 63.2 5.4 35 21-58 107-141 (543)
279 1cp2_A CP2, nitrogenase iron p 96.9 0.0011 3.6E-08 56.5 5.2 39 23-61 2-40 (269)
280 2zan_A Vacuolar protein sortin 96.9 0.00071 2.4E-08 62.5 4.2 40 20-61 165-204 (444)
281 1tue_A Replication protein E1; 96.8 0.00057 1.9E-08 56.5 3.1 24 23-46 59-82 (212)
282 2z43_A DNA repair and recombin 96.8 0.0008 2.7E-08 59.4 4.2 40 21-60 106-151 (324)
283 1v5w_A DMC1, meiotic recombina 96.8 0.0011 3.7E-08 59.1 4.9 41 20-60 120-166 (343)
284 2pcj_A ABC transporter, lipopr 96.8 0.00057 1.9E-08 57.2 2.9 27 20-46 28-54 (224)
285 2i3b_A HCR-ntpase, human cance 96.8 0.00071 2.4E-08 55.1 3.4 28 23-50 2-29 (189)
286 2cbz_A Multidrug resistance-as 96.8 0.00065 2.2E-08 57.4 3.2 27 20-46 29-55 (237)
287 1sxj_D Activator 1 41 kDa subu 96.8 0.00085 2.9E-08 59.1 4.0 24 24-47 60-83 (353)
288 2ewv_A Twitching motility prot 96.8 0.0014 4.9E-08 59.0 5.6 30 20-49 134-163 (372)
289 1mv5_A LMRA, multidrug resista 96.8 0.00077 2.6E-08 57.1 3.4 27 20-46 26-52 (243)
290 3pxg_A Negative regulator of g 96.7 0.001 3.6E-08 61.7 4.5 29 20-48 199-227 (468)
291 2dhr_A FTSH; AAA+ protein, hex 96.7 0.0013 4.4E-08 61.6 5.1 37 22-61 64-100 (499)
292 2orv_A Thymidine kinase; TP4A 96.7 0.002 7E-08 54.1 5.8 39 19-57 16-54 (234)
293 3hu3_A Transitional endoplasmi 96.7 0.0011 3.8E-08 62.0 4.5 39 20-61 236-274 (489)
294 1sxj_E Activator 1 40 kDa subu 96.7 0.00085 2.9E-08 59.4 3.6 24 22-46 37-60 (354)
295 1pzn_A RAD51, DNA repair and r 96.7 0.0012 4.2E-08 58.9 4.6 41 20-60 129-175 (349)
296 2hf9_A Probable hydrogenase ni 96.7 0.001 3.5E-08 54.9 3.9 37 20-57 36-72 (226)
297 1wcv_1 SOJ, segregation protei 96.7 0.0013 4.3E-08 55.8 4.5 40 21-60 5-45 (257)
298 1b0u_A Histidine permease; ABC 96.7 0.0008 2.7E-08 57.7 3.2 27 20-46 30-56 (262)
299 4g1u_C Hemin import ATP-bindin 96.7 0.00075 2.6E-08 58.0 3.0 41 20-61 35-75 (266)
300 3gfo_A Cobalt import ATP-bindi 96.7 0.00075 2.6E-08 58.4 3.0 27 20-46 32-58 (275)
301 1sxj_C Activator 1 40 kDa subu 96.7 0.00097 3.3E-08 59.0 3.7 23 25-47 49-71 (340)
302 2ff7_A Alpha-hemolysin translo 96.7 0.00082 2.8E-08 57.1 3.1 27 20-46 33-59 (247)
303 2d2e_A SUFC protein; ABC-ATPas 96.7 0.00099 3.4E-08 56.7 3.6 26 20-45 27-52 (250)
304 1g3q_A MIND ATPase, cell divis 96.7 0.0023 7.8E-08 53.2 5.8 38 23-60 3-41 (237)
305 3jvv_A Twitching mobility prot 96.7 0.002 6.9E-08 57.7 5.7 30 20-49 121-150 (356)
306 4dzz_A Plasmid partitioning pr 96.7 0.0018 6.3E-08 52.4 5.0 37 24-60 3-40 (206)
307 3io5_A Recombination and repai 96.7 0.0017 6E-08 57.2 5.1 39 21-60 28-68 (333)
308 2olj_A Amino acid ABC transpor 96.7 0.00091 3.1E-08 57.4 3.2 27 20-46 48-74 (263)
309 2ixe_A Antigen peptide transpo 96.7 0.00092 3.1E-08 57.6 3.2 27 20-46 43-69 (271)
310 2ghi_A Transport protein; mult 96.7 0.00093 3.2E-08 57.2 3.2 38 20-59 44-81 (260)
311 2pze_A Cystic fibrosis transme 96.7 0.0009 3.1E-08 56.2 3.0 27 20-46 32-58 (229)
312 2zu0_C Probable ATP-dependent 96.6 0.0011 3.8E-08 56.9 3.7 26 20-45 44-69 (267)
313 1ji0_A ABC transporter; ATP bi 96.6 0.00092 3.2E-08 56.5 3.1 27 20-46 30-56 (240)
314 3fkq_A NTRC-like two-domain pr 96.6 0.0026 8.9E-08 57.2 6.1 40 20-59 141-181 (373)
315 2r44_A Uncharacterized protein 96.6 0.00099 3.4E-08 58.6 3.3 32 23-57 47-78 (331)
316 1vpl_A ABC transporter, ATP-bi 96.6 0.001 3.4E-08 56.9 3.2 27 20-46 39-65 (256)
317 1g6h_A High-affinity branched- 96.6 0.00097 3.3E-08 57.0 3.1 27 20-46 31-57 (257)
318 1iqp_A RFCS; clamp loader, ext 96.6 0.0012 4E-08 57.5 3.6 27 21-47 45-71 (327)
319 1p9r_A General secretion pathw 96.6 0.002 6.9E-08 59.0 5.3 41 20-61 165-205 (418)
320 1ojl_A Transcriptional regulat 96.6 0.00099 3.4E-08 58.3 3.1 42 20-61 23-64 (304)
321 1sgw_A Putative ABC transporte 96.6 0.00082 2.8E-08 55.9 2.4 27 20-46 33-59 (214)
322 3b85_A Phosphate starvation-in 96.6 0.00073 2.5E-08 55.9 2.1 26 20-45 20-45 (208)
323 3tvt_A Disks large 1 tumor sup 96.6 0.0076 2.6E-07 52.5 8.6 96 86-193 181-277 (292)
324 3q9l_A Septum site-determining 96.6 0.0027 9.1E-08 53.5 5.6 38 23-60 3-41 (260)
325 1hyq_A MIND, cell division inh 96.6 0.003 1E-07 53.4 5.9 37 24-60 5-41 (263)
326 2yz2_A Putative ABC transporte 96.6 0.0011 3.8E-08 56.9 3.2 27 20-46 31-57 (266)
327 2xkx_A Disks large homolog 4; 96.6 0.0032 1.1E-07 61.7 6.8 95 87-193 613-708 (721)
328 2chq_A Replication factor C sm 96.6 0.0015 5.1E-08 56.6 4.0 24 24-47 40-63 (319)
329 3pxi_A Negative regulator of g 96.6 0.0023 7.9E-08 62.9 5.8 40 24-63 523-562 (758)
330 1w5s_A Origin recognition comp 96.6 0.0015 5.3E-08 58.7 4.3 38 20-57 48-93 (412)
331 1ypw_A Transitional endoplasmi 96.6 0.0012 4.2E-08 65.4 3.7 37 20-59 236-272 (806)
332 3lda_A DNA repair protein RAD5 96.6 0.0016 5.4E-08 59.4 4.2 40 21-60 177-222 (400)
333 3ea0_A ATPase, para family; al 96.6 0.0029 1E-07 52.7 5.6 41 21-61 3-45 (245)
334 2qi9_C Vitamin B12 import ATP- 96.5 0.0011 3.9E-08 56.3 3.0 27 20-46 24-50 (249)
335 3k9g_A PF-32 protein; ssgcid, 96.5 0.0017 5.8E-08 55.2 4.1 40 20-60 25-65 (267)
336 1qvr_A CLPB protein; coiled co 96.5 0.0044 1.5E-07 61.8 7.6 41 23-63 589-629 (854)
337 1tf7_A KAIC; homohexamer, hexa 96.5 0.0027 9.3E-08 59.8 5.7 40 20-59 279-318 (525)
338 3fvq_A Fe(3+) IONS import ATP- 96.5 0.0015 5E-08 58.7 3.6 27 20-46 28-54 (359)
339 2ihy_A ABC transporter, ATP-bi 96.5 0.0012 4.2E-08 57.1 3.0 27 20-46 45-71 (279)
340 2onk_A Molybdate/tungstate ABC 96.5 0.0016 5.5E-08 55.1 3.5 26 20-46 23-48 (240)
341 1jr3_A DNA polymerase III subu 96.5 0.0019 6.6E-08 57.3 4.3 29 19-47 35-63 (373)
342 2nq2_C Hypothetical ABC transp 96.5 0.0013 4.4E-08 56.1 3.0 27 20-46 29-55 (253)
343 1r6b_X CLPA protein; AAA+, N-t 96.5 0.0044 1.5E-07 60.8 7.1 38 23-63 489-526 (758)
344 1sxj_B Activator 1 37 kDa subu 96.5 0.0018 6.1E-08 56.2 3.8 24 24-47 44-67 (323)
345 3rlf_A Maltose/maltodextrin im 96.4 0.0018 6.2E-08 58.5 3.7 27 20-46 27-53 (381)
346 2oze_A ORF delta'; para, walke 96.4 0.0024 8.1E-08 55.2 4.3 40 22-61 34-76 (298)
347 3co5_A Putative two-component 96.4 0.00082 2.8E-08 51.9 1.2 26 21-46 26-51 (143)
348 3tui_C Methionine import ATP-b 96.4 0.0019 6.6E-08 58.0 3.7 27 20-46 52-78 (366)
349 3e2i_A Thymidine kinase; Zn-bi 96.4 0.005 1.7E-07 51.2 5.9 37 20-56 26-62 (219)
350 2yyz_A Sugar ABC transporter, 96.4 0.002 7E-08 57.8 3.7 27 20-46 27-53 (359)
351 3cwq_A Para family chromosome 96.4 0.004 1.4E-07 51.2 5.2 36 24-60 3-38 (209)
352 3nh6_A ATP-binding cassette SU 96.4 0.0012 4.1E-08 58.0 2.0 41 20-61 78-118 (306)
353 3e1s_A Exodeoxyribonuclease V, 96.3 0.0038 1.3E-07 59.5 5.7 35 22-56 204-238 (574)
354 2it1_A 362AA long hypothetical 96.3 0.0022 7.4E-08 57.7 3.7 27 20-46 27-53 (362)
355 2bbs_A Cystic fibrosis transme 96.3 0.0018 6.2E-08 56.3 3.1 27 20-46 62-88 (290)
356 1z47_A CYSA, putative ABC-tran 96.3 0.0021 7.2E-08 57.6 3.6 27 20-46 39-65 (355)
357 2gza_A Type IV secretion syste 96.3 0.0016 5.5E-08 58.4 2.8 37 20-57 173-209 (361)
358 1v43_A Sugar-binding transport 96.3 0.0023 7.7E-08 57.8 3.7 27 20-46 35-61 (372)
359 1byi_A Dethiobiotin synthase; 96.3 0.0054 1.8E-07 50.5 5.8 35 24-58 3-38 (224)
360 3fwy_A Light-independent proto 96.3 0.0049 1.7E-07 54.2 5.7 40 21-60 47-86 (314)
361 2i1q_A DNA repair and recombin 96.3 0.0026 9E-08 55.8 4.0 41 20-60 96-152 (322)
362 2npi_A Protein CLP1; CLP1-PCF1 96.3 0.0017 5.9E-08 60.2 2.9 28 20-47 136-163 (460)
363 1nij_A Hypothetical protein YJ 96.3 0.0021 7.2E-08 56.6 3.3 35 22-58 4-38 (318)
364 1qvr_A CLPB protein; coiled co 96.3 0.0029 9.8E-08 63.1 4.5 42 20-61 189-237 (854)
365 4ag6_A VIRB4 ATPase, type IV s 96.3 0.0041 1.4E-07 56.1 5.1 38 22-59 35-72 (392)
366 1tf7_A KAIC; homohexamer, hexa 96.2 0.0045 1.5E-07 58.2 5.5 40 20-60 37-78 (525)
367 1lw7_A Transcriptional regulat 96.2 0.0022 7.5E-08 57.4 3.2 25 22-46 170-194 (365)
368 3gd7_A Fusion complex of cysti 96.2 0.0026 8.7E-08 57.8 3.6 39 20-60 45-83 (390)
369 1g29_1 MALK, maltose transport 96.2 0.0026 8.7E-08 57.4 3.6 27 20-46 27-53 (372)
370 3d31_A Sulfate/molybdate ABC t 96.2 0.0019 6.4E-08 57.8 2.6 27 20-46 24-50 (348)
371 1w4r_A Thymidine kinase; type 96.2 0.0076 2.6E-07 49.3 5.9 38 20-57 18-55 (195)
372 2pjz_A Hypothetical protein ST 96.2 0.0023 7.7E-08 54.9 2.9 35 22-58 30-64 (263)
373 2xj4_A MIPZ; replication, cell 96.2 0.0049 1.7E-07 53.1 5.0 38 23-60 5-43 (286)
374 1ypw_A Transitional endoplasmi 96.2 0.0014 4.9E-08 64.9 1.7 39 20-61 509-547 (806)
375 3kta_A Chromosome segregation 96.2 0.0031 1.1E-07 50.2 3.4 25 22-46 26-50 (182)
376 2gj8_A MNME, tRNA modification 96.2 0.0034 1.2E-07 49.6 3.6 26 20-45 2-27 (172)
377 1a5t_A Delta prime, HOLB; zinc 96.1 0.0042 1.4E-07 54.9 4.5 30 18-47 20-49 (334)
378 2fna_A Conserved hypothetical 96.1 0.0054 1.8E-07 53.6 5.1 34 23-59 31-64 (357)
379 3qxc_A Dethiobiotin synthetase 96.1 0.0092 3.1E-07 50.5 6.1 38 20-57 19-57 (242)
380 1g8p_A Magnesium-chelatase 38 96.1 0.0015 5.1E-08 57.5 1.2 24 23-46 46-69 (350)
381 3cmu_A Protein RECA, recombina 96.1 0.0059 2E-07 65.5 5.8 42 20-61 1425-1466(2050)
382 1oxx_K GLCV, glucose, ABC tran 96.1 0.0019 6.6E-08 57.8 1.9 27 20-46 29-55 (353)
383 1ko7_A HPR kinase/phosphatase; 96.1 0.0046 1.6E-07 54.4 4.2 25 21-45 143-167 (314)
384 2pt7_A CAG-ALFA; ATPase, prote 96.1 0.0017 5.7E-08 57.6 1.4 36 21-57 170-205 (330)
385 3pxi_A Negative regulator of g 96.1 0.0038 1.3E-07 61.4 4.1 29 20-48 199-227 (758)
386 2wjg_A FEOB, ferrous iron tran 96.0 0.0048 1.7E-07 48.9 3.9 25 20-44 5-29 (188)
387 2wji_A Ferrous iron transport 96.0 0.0047 1.6E-07 48.2 3.7 23 22-44 3-25 (165)
388 1ihu_A Arsenical pump-driving 96.0 0.0092 3.1E-07 56.8 6.3 42 20-61 325-366 (589)
389 3sop_A Neuronal-specific septi 96.0 0.0046 1.6E-07 53.1 3.8 24 24-47 4-27 (270)
390 1r6b_X CLPA protein; AAA+, N-t 96.0 0.0065 2.2E-07 59.6 5.3 32 18-49 203-234 (758)
391 3upu_A ATP-dependent DNA helic 95.9 0.0083 2.8E-07 55.4 5.6 32 24-55 47-79 (459)
392 1u0j_A DNA replication protein 95.9 0.0054 1.8E-07 52.7 4.0 25 22-46 104-128 (267)
393 1pui_A ENGB, probable GTP-bind 95.9 0.0028 9.6E-08 51.4 2.1 27 19-45 23-49 (210)
394 3of5_A Dethiobiotin synthetase 95.9 0.013 4.3E-07 49.1 6.1 35 23-57 5-40 (228)
395 2ce2_X GTPase HRAS; signaling 95.9 0.0057 2E-07 46.9 3.8 24 22-45 3-26 (166)
396 3k1j_A LON protease, ATP-depen 95.9 0.0035 1.2E-07 60.0 3.0 27 21-47 59-85 (604)
397 1knx_A Probable HPR(Ser) kinas 95.9 0.0039 1.3E-07 54.7 2.9 25 21-45 146-170 (312)
398 1kao_A RAP2A; GTP-binding prot 95.9 0.0064 2.2E-07 46.7 3.8 25 21-45 2-26 (167)
399 3ez2_A Plasmid partition prote 95.8 0.011 3.8E-07 53.3 5.9 41 20-60 106-153 (398)
400 2oap_1 GSPE-2, type II secreti 95.8 0.0034 1.2E-07 58.9 2.5 27 21-47 259-285 (511)
401 2yv5_A YJEQ protein; hydrolase 95.8 0.0054 1.9E-07 53.5 3.6 25 21-46 164-188 (302)
402 1u8z_A RAS-related protein RAL 95.8 0.0075 2.6E-07 46.4 4.0 25 21-45 3-27 (168)
403 2rcn_A Probable GTPase ENGC; Y 95.8 0.0054 1.8E-07 55.0 3.5 26 21-46 214-239 (358)
404 2qen_A Walker-type ATPase; unk 95.8 0.0071 2.4E-07 52.8 4.2 31 23-58 32-62 (350)
405 3con_A GTPase NRAS; structural 95.7 0.0066 2.3E-07 48.2 3.5 26 20-45 19-44 (190)
406 1oix_A RAS-related protein RAB 95.7 0.0071 2.4E-07 48.6 3.7 25 22-46 29-53 (191)
407 3cmw_A Protein RECA, recombina 95.7 0.012 4E-07 62.4 6.1 43 20-62 730-772 (1706)
408 3igf_A ALL4481 protein; two-do 95.7 0.0071 2.4E-07 54.5 3.9 37 22-58 2-38 (374)
409 3cf2_A TER ATPase, transitiona 95.7 0.0044 1.5E-07 61.2 2.7 36 21-59 510-545 (806)
410 1yqt_A RNAse L inhibitor; ATP- 95.6 0.0066 2.3E-07 57.4 3.6 27 20-46 45-71 (538)
411 1z2a_A RAS-related protein RAB 95.6 0.0085 2.9E-07 46.2 3.7 25 21-45 4-28 (168)
412 3nbx_X ATPase RAVA; AAA+ ATPas 95.6 0.0043 1.5E-07 58.1 2.3 25 22-46 41-65 (500)
413 3oes_A GTPase rhebl1; small GT 95.6 0.0079 2.7E-07 48.5 3.6 26 20-45 22-47 (201)
414 3clv_A RAB5 protein, putative; 95.6 0.011 3.6E-07 47.1 4.3 26 20-45 5-30 (208)
415 3b5x_A Lipid A export ATP-bind 95.6 0.0065 2.2E-07 57.9 3.5 41 20-61 367-407 (582)
416 1c1y_A RAS-related protein RAP 95.6 0.0094 3.2E-07 45.9 3.9 24 22-45 3-26 (167)
417 3cmw_A Protein RECA, recombina 95.6 0.014 4.7E-07 62.0 6.1 40 21-60 382-421 (1706)
418 2f9l_A RAB11B, member RAS onco 95.6 0.0075 2.6E-07 48.6 3.3 23 23-45 6-28 (199)
419 1u0l_A Probable GTPase ENGC; p 95.5 0.0074 2.5E-07 52.6 3.4 26 21-46 168-193 (301)
420 3b60_A Lipid A export ATP-bind 95.5 0.0061 2.1E-07 58.1 3.1 41 20-61 367-407 (582)
421 3pg5_A Uncharacterized protein 95.5 0.0076 2.6E-07 53.9 3.5 37 24-60 4-40 (361)
422 2qag_B Septin-6, protein NEDD5 95.5 0.0067 2.3E-07 55.6 3.1 26 20-45 38-65 (427)
423 2lkc_A Translation initiation 95.5 0.0096 3.3E-07 46.5 3.7 25 20-44 6-30 (178)
424 2dyk_A GTP-binding protein; GT 95.5 0.01 3.5E-07 45.5 3.8 22 24-45 3-24 (161)
425 2ged_A SR-beta, signal recogni 95.5 0.01 3.5E-07 47.2 3.9 25 21-45 47-71 (193)
426 1upt_A ARL1, ADP-ribosylation 95.4 0.013 4.3E-07 45.4 4.1 25 20-44 5-29 (171)
427 2gno_A DNA polymerase III, gam 95.4 0.01 3.5E-07 51.9 3.9 33 14-46 10-42 (305)
428 2nzj_A GTP-binding protein REM 95.4 0.011 3.7E-07 46.0 3.7 25 21-45 3-27 (175)
429 3ez9_A Para; DNA binding, wing 95.4 0.0087 3E-07 54.2 3.5 41 20-60 109-156 (403)
430 4dsu_A GTPase KRAS, isoform 2B 95.4 0.01 3.4E-07 46.8 3.5 25 21-45 3-27 (189)
431 3ozx_A RNAse L inhibitor; ATP 95.4 0.0089 3E-07 56.5 3.6 27 20-46 23-49 (538)
432 3kkq_A RAS-related protein M-R 95.4 0.013 4.5E-07 46.1 4.1 26 20-45 16-41 (183)
433 3cmu_A Protein RECA, recombina 95.4 0.017 5.6E-07 62.2 5.8 40 21-60 382-421 (2050)
434 1nrj_B SR-beta, signal recogni 95.4 0.012 4.1E-07 47.9 3.9 25 21-45 11-35 (218)
435 1z0f_A RAB14, member RAS oncog 95.4 0.011 3.9E-07 46.0 3.6 24 22-45 15-38 (179)
436 2fn4_A P23, RAS-related protei 95.3 0.012 4.2E-07 45.9 3.8 25 21-45 8-32 (181)
437 2hxs_A RAB-26, RAS-related pro 95.3 0.013 4.4E-07 45.8 3.9 24 21-44 5-28 (178)
438 2a9k_A RAS-related protein RAL 95.3 0.012 4.3E-07 46.1 3.7 26 20-45 16-41 (187)
439 1ek0_A Protein (GTP-binding pr 95.3 0.012 4E-07 45.4 3.5 24 22-45 3-26 (170)
440 1ky3_A GTP-binding protein YPT 95.3 0.012 4.3E-07 45.9 3.7 25 21-45 7-31 (182)
441 3ozx_A RNAse L inhibitor; ATP 95.3 0.0082 2.8E-07 56.7 3.0 28 20-47 292-319 (538)
442 2zej_A Dardarin, leucine-rich 95.3 0.0094 3.2E-07 47.4 3.0 22 23-44 3-24 (184)
443 1tq4_A IIGP1, interferon-induc 95.3 0.011 3.8E-07 53.9 3.7 26 21-46 68-93 (413)
444 1t9h_A YLOQ, probable GTPase E 95.3 0.0039 1.3E-07 54.7 0.7 26 21-46 172-197 (307)
445 2erx_A GTP-binding protein DI- 95.3 0.012 4.2E-07 45.4 3.5 22 23-44 4-25 (172)
446 3j16_B RLI1P; ribosome recycli 95.2 0.011 3.6E-07 56.8 3.6 27 20-46 101-127 (608)
447 2yl4_A ATP-binding cassette SU 95.2 0.0067 2.3E-07 57.9 2.2 41 20-61 368-408 (595)
448 1mh1_A RAC1; GTP-binding, GTPa 95.2 0.014 4.7E-07 45.9 3.7 25 20-44 3-27 (186)
449 1yqt_A RNAse L inhibitor; ATP- 95.2 0.011 3.8E-07 55.8 3.5 26 21-46 311-336 (538)
450 3q72_A GTP-binding protein RAD 95.2 0.011 3.6E-07 45.7 2.9 22 23-44 3-24 (166)
451 3qf4_B Uncharacterized ABC tra 95.2 0.0074 2.5E-07 57.7 2.3 41 20-61 379-419 (598)
452 1moz_A ARL1, ADP-ribosylation 95.2 0.011 3.6E-07 46.6 2.9 25 20-44 16-40 (183)
453 1fzq_A ADP-ribosylation factor 95.2 0.015 5.2E-07 46.1 3.8 26 20-45 14-39 (181)
454 1f2t_A RAD50 ABC-ATPase; DNA d 95.1 0.02 6.7E-07 44.5 4.3 26 21-46 22-47 (149)
455 4a82_A Cystic fibrosis transme 95.1 0.0061 2.1E-07 58.0 1.6 41 20-61 365-405 (578)
456 1svi_A GTP-binding protein YSX 95.1 0.016 5.5E-07 46.1 3.9 25 21-45 22-46 (195)
457 1wms_A RAB-9, RAB9, RAS-relate 95.1 0.013 4.5E-07 45.7 3.3 23 22-44 7-29 (177)
458 3q85_A GTP-binding protein REM 95.1 0.013 4.3E-07 45.4 3.2 20 24-43 4-23 (169)
459 2q3h_A RAS homolog gene family 95.1 0.015 5.2E-07 46.6 3.7 26 20-45 18-43 (201)
460 2y8e_A RAB-protein 6, GH09086P 95.1 0.013 4.5E-07 45.6 3.2 24 21-44 13-36 (179)
461 3k53_A Ferrous iron transport 95.1 0.015 5.1E-07 49.6 3.8 24 22-45 3-26 (271)
462 1z0j_A RAB-22, RAS-related pro 95.1 0.014 4.7E-07 45.1 3.3 24 22-45 6-29 (170)
463 3bk7_A ABC transporter ATP-bin 95.1 0.011 3.6E-07 56.8 3.1 27 20-46 115-141 (607)
464 3fgn_A Dethiobiotin synthetase 95.1 0.037 1.3E-06 47.0 6.2 50 7-57 12-62 (251)
465 1g16_A RAS-related protein SEC 95.1 0.016 5.4E-07 44.7 3.6 22 23-44 4-25 (170)
466 1z08_A RAS-related protein RAB 95.1 0.015 5.1E-07 45.0 3.4 24 22-45 6-29 (170)
467 3tw8_B RAS-related protein RAB 95.1 0.014 4.7E-07 45.6 3.3 24 21-44 8-31 (181)
468 3qf4_A ABC transporter, ATP-bi 95.0 0.0079 2.7E-07 57.4 2.1 41 20-61 367-407 (587)
469 2g6b_A RAS-related protein RAB 95.0 0.015 5E-07 45.5 3.4 26 20-45 8-33 (180)
470 3bk7_A ABC transporter ATP-bin 95.0 0.013 4.4E-07 56.2 3.5 27 20-46 380-406 (607)
471 1r2q_A RAS-related protein RAB 95.0 0.015 5.2E-07 44.8 3.3 23 22-44 6-28 (170)
472 2fg5_A RAB-22B, RAS-related pr 95.0 0.015 5.1E-07 46.5 3.4 25 21-45 22-46 (192)
473 2dpy_A FLII, flagellum-specifi 95.0 0.015 5.1E-07 53.5 3.8 27 20-46 155-181 (438)
474 1zj6_A ADP-ribosylation factor 95.0 0.019 6.6E-07 45.4 4.0 26 19-44 13-38 (187)
475 3t5g_A GTP-binding protein RHE 95.0 0.013 4.4E-07 46.0 2.9 24 21-44 5-28 (181)
476 2obl_A ESCN; ATPase, hydrolase 95.0 0.016 5.5E-07 51.6 3.8 27 20-46 69-95 (347)
477 3bwd_D RAC-like GTP-binding pr 95.0 0.018 6.2E-07 45.1 3.8 26 20-45 6-31 (182)
478 2atv_A RERG, RAS-like estrogen 95.0 0.019 6.6E-07 45.9 4.0 26 20-45 26-51 (196)
479 3lxx_A GTPase IMAP family memb 95.0 0.016 5.3E-07 48.3 3.5 25 21-45 28-52 (239)
480 1w36_D RECD, exodeoxyribonucle 95.0 0.024 8.3E-07 54.3 5.3 27 21-47 163-189 (608)
481 2vf7_A UVRA2, excinuclease ABC 95.0 0.011 3.7E-07 58.7 2.9 19 21-39 35-53 (842)
482 1ksh_A ARF-like protein 2; sma 95.0 0.018 6E-07 45.5 3.7 25 20-44 16-40 (186)
483 3bc1_A RAS-related protein RAB 94.9 0.017 5.9E-07 45.5 3.6 24 22-45 11-34 (195)
484 3euj_A Chromosome partition pr 94.9 0.017 6E-07 53.7 4.1 25 23-47 30-54 (483)
485 1m2o_B GTP-binding protein SAR 94.9 0.016 5.6E-07 46.3 3.4 24 21-44 22-45 (190)
486 2bov_A RAla, RAS-related prote 94.9 0.02 7E-07 45.8 4.0 26 20-45 12-37 (206)
487 1zcb_A G alpha I/13; GTP-bindi 94.9 0.017 5.8E-07 51.8 3.8 24 20-43 31-54 (362)
488 1z06_A RAS-related protein RAB 94.9 0.019 6.3E-07 45.6 3.7 25 20-44 18-42 (189)
489 2iwr_A Centaurin gamma 1; ANK 94.9 0.015 5.1E-07 45.5 3.1 26 20-45 5-30 (178)
490 2efe_B Small GTP-binding prote 94.9 0.017 5.9E-07 45.2 3.4 25 21-45 11-35 (181)
491 2bme_A RAB4A, RAS-related prot 94.9 0.018 6E-07 45.4 3.5 25 21-45 9-33 (186)
492 1ega_A Protein (GTP-binding pr 94.9 0.016 5.3E-07 50.5 3.4 26 20-45 6-31 (301)
493 3j16_B RLI1P; ribosome recycli 94.9 0.015 5.1E-07 55.7 3.5 26 22-47 378-403 (608)
494 1m7b_A RND3/RHOE small GTP-bin 94.9 0.019 6.4E-07 45.4 3.6 25 21-45 6-30 (184)
495 1r8s_A ADP-ribosylation factor 94.9 0.019 6.4E-07 44.2 3.5 22 24-45 2-23 (164)
496 2p5s_A RAS and EF-hand domain 94.9 0.021 7.1E-07 45.9 3.9 25 20-44 26-50 (199)
497 1g5t_A COB(I)alamin adenosyltr 94.9 0.033 1.1E-06 45.5 5.0 35 21-56 28-62 (196)
498 1f6b_A SAR1; gtpases, N-termin 94.8 0.018 6.2E-07 46.4 3.4 25 20-44 23-47 (198)
499 2b6h_A ADP-ribosylation factor 94.8 0.021 7.3E-07 45.7 3.8 25 20-44 27-51 (192)
500 1zd9_A ADP-ribosylation factor 94.8 0.02 6.9E-07 45.5 3.6 26 20-45 20-45 (188)
No 1
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=100.00 E-value=9e-53 Score=403.36 Aligned_cols=263 Identities=50% Similarity=0.934 Sum_probs=230.4
Q ss_pred cccchhhhhhhcCC----CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHH
Q psy17388 7 EGKESWLRDFKEGQ----SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRR 82 (272)
Q Consensus 7 ~~~~~~~r~~~~~~----~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~ 82 (272)
++.++ |+.+.++ +|++|+|+|+|||||||+|++|+++|...|++++.+|+|.++..+..+.+|+..++.+++++
T Consensus 35 v~~~~--r~~~~~~~~~~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~dree~~r~ 112 (630)
T 1x6v_B 35 VSRNK--RGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRR 112 (630)
T ss_dssp CCHHH--HHHHSSSSSSCCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHHHHHHHHH
T ss_pred CCHHH--HHHHhCCCccCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhhhHHHHHH
Confidence 44444 4555554 89999999999999999999999999888889999999999888776677887888889988
Q ss_pred HHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccC
Q psy17388 83 AAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPY 162 (272)
Q Consensus 83 i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~y 162 (272)
+.++++.++++|.+||+++.+++...++.+++++...+.++++|||+||++++.+|+.++.+++.|.+++..+..++..|
T Consensus 113 i~eva~~~l~~G~iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r~ly~~aR~~~~~~~~~~~~~Y 192 (630)
T 1x6v_B 113 IAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEY 192 (630)
T ss_dssp HHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTTSHHHHHTTC----CBTTTBCC
T ss_pred HHHHHHHHHhCCCEEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhccccchhhhhhhHHHHHHhhhhh
Confidence 88888888899999999988887778889999888888889999999999999999988877777777666777788899
Q ss_pred CCCCCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCCCch------hhh-----------hccCCceecCchhHHHHHHHhh
Q psy17388 163 EAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIPARQ------FFF-----------IEALPRLDIGVIDLQWVQVIAE 225 (272)
Q Consensus 163 e~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~~~~~~~~------l~~-----------~~~~~~~~~~~~~~~~~~~~~~ 225 (272)
+.|..++++|||++.++++++++|++.|...+++|-|+ |++ +..||+|.|+++++|||++|++
T Consensus 193 e~p~~~dlvIDts~~s~eevv~~Il~~L~~~~~ip~G~~~~l~~l~v~~~~~~~~~~~a~~l~~i~l~~~~~~dlell~~ 272 (630)
T 1x6v_B 193 EKPEAPELVLKTDSCDVNDCVQQVVELLQERDIVPVDASYEVKELYVPENKLHLAKTDAETLPALKINKVDMQWVQVLAE 272 (630)
T ss_dssp CCCSSCSEEEETTSSCHHHHHHHHHHHHHHTTSSCCCCCCSCCCCBCCGGGHHHHHHHHHTSCEEECCHHHHHHHHHHHH
T ss_pred cccCCCcEEEECCCCCHHHHHHHHHHHHHhcCcccccCcccceecccChHHHHHHHHhhccCCEEEECHHHHHHHHHHhc
Confidence 98878899999998999999999999999999999863 343 7789999999999999999999
Q ss_pred ccccCccCCCCHHHHHhhhhhcccCCC--CccceeEEEecChhhhhhc
Q psy17388 226 GWSSPLKGFMREDEFLKTIHFNTLDSN--VNQSVAIVLAVTGEDKQRL 271 (272)
Q Consensus 226 g~~~pl~gfm~~~~~~~v~~~~~l~~~--~~~~~pi~l~~~~~~~~~~ 271 (272)
||||||+|||+++||+||+++|||+|| ++|||||||+|++++++.|
T Consensus 273 G~fsPL~GfM~~~dy~~v~~~~~l~~g~~~~~~iPi~L~v~~~~~~~l 320 (630)
T 1x6v_B 273 GWATPLNGFMREREYLQCLHFDCLLDGGVINLSVPIVLTATHEDKERL 320 (630)
T ss_dssp TTTTTCCSSCCHHHHHHHHHHSEECTTSCEECCSCCCEEECHHHHHHH
T ss_pred CCccCchhhCCHHHHHHHHHhCEeCCCCeeeeeeEEEEeCCHHHHhhC
Confidence 999999999999999999999999996 7999999999999988765
No 2
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.94 E-value=7.4e-26 Score=188.99 Aligned_cols=182 Identities=40% Similarity=0.711 Sum_probs=156.8
Q ss_pred hhhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhC
Q psy17388 14 RDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAEC 93 (272)
Q Consensus 14 r~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 93 (272)
|..+...+|.+|+|+|+|||||||+++.|+..+...|..++++|+|.++..+....++..+++..+++.+..++..+...
T Consensus 17 ~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (200)
T 3uie_A 17 RQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLNRDLSFKAEDRAENIRRVGEVAKLFADA 96 (200)
T ss_dssp HHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHhhcccCcChHHHHHHHHHHHHHHHHHHhC
Confidence 45666688999999999999999999999999976676667899999988777677888888878888887888888889
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCCCCCcEEEe
Q psy17388 94 GFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILE 173 (272)
Q Consensus 94 g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~~~~~~~Id 173 (272)
|..++.++.++....|+.+++.+. +..++.|||++|++++.+|+.++.+...+.++...+..++..|+.|..++++||
T Consensus 97 ~~~vi~~~~~~~~~~r~~~~~~~~--~~~~~~v~L~a~~e~~~~R~~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~id 174 (200)
T 3uie_A 97 GIICIASLISPYRTDRDACRSLLP--EGDFVEVFMDVPLSVCEARDPKGLYKLARAGKIKGFTGIDDPYEPPLNCEISLG 174 (200)
T ss_dssp TCEEEEECCCCCHHHHHHHHHTSC--TTSEEEEEECCCHHHHHHHCTTSHHHHHHTTSSCSCBTTTBCCCCCSSCSEEEC
T ss_pred CceEEEecCCchHHHHHHHHHhcC--CCCEEEEEEeCCHHHHHHhcccchHHHHhcCCCCCCCCCCCcCcCCCCCCEEEe
Confidence 999999988888888888877654 347888999999999999998888777777777777778888998888899999
Q ss_pred CCC-CCHHHHHHHHHHHHHhCCCCC
Q psy17388 174 TVN-VPVEKCANSVLDMIAAKGLIP 197 (272)
Q Consensus 174 t~~-~~~ee~~~~I~~~L~~~~~~~ 197 (272)
|++ +++++++++|++.|...++++
T Consensus 175 t~~~~~~~e~v~~i~~~l~~~~~~~ 199 (200)
T 3uie_A 175 REGGTSPIEMAEKVVGYLDNKGYLQ 199 (200)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHTTTC
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 998 799999999999999998875
No 3
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=99.94 E-value=2.9e-25 Score=212.46 Aligned_cols=180 Identities=31% Similarity=0.565 Sum_probs=160.0
Q ss_pred cCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcC-CCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCe
Q psy17388 18 EGQSNICLLFPGLSGAGKTSISFQIESYLIAQG-IPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFI 96 (272)
Q Consensus 18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g-~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~ 96 (272)
.+++|.+|+|+|+|||||||+|++|+++|...| ++++++|+|.++..+..+..|...++.++++++..+++.+.++|.+
T Consensus 392 ~gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l~~~~~f~~~er~~~i~ri~~v~~~~~~~g~~ 471 (573)
T 1m8p_A 392 RATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNIQRIAFVATELTRAGAA 471 (573)
T ss_dssp TTTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCTTCCCSHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred ccccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHhccccCCChhHHHHHHHHHHHHHHHHHhCCCE
Confidence 567889999999999999999999999997766 7899999999998887778899888888888888899999999999
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCCCCCcEEEeCCC
Q psy17388 97 ALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVN 176 (272)
Q Consensus 97 VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~~~~~~~Idt~~ 176 (272)
||++.++++...|+.++++++..| ++++|||+||++++.+|+.++++.+.+.+.++.+.+.+..|+.|..++++|||++
T Consensus 472 VI~~~is~~~~~R~~~r~l~~~~g-~~~~V~Lda~~ev~~~R~~r~l~~~~~~~~i~~~~~~r~~~~~p~~~dl~IDts~ 550 (573)
T 1m8p_A 472 VIAAPIAPYEESRKFARDAVSQAG-SFFLVHVATPLEHCEQSDKRGIYAAARRGEIKGFTGVDDPYETPEKADLVVDFSK 550 (573)
T ss_dssp EEEECCCCCHHHHHHHHHHHHTTS-EEEEEEECCCHHHHHHHCSSCHHHHHHTTSSSSCBTTTBCCCCCSSCSEEECTTT
T ss_pred EEEEcCCCcHHHHHHHHHHHHhcC-CeEEEEEeCCHHHHHHHhcccchhhhhHHHHHHHHhccccccccCCCCEEEECCC
Confidence 999999988889999988887655 6889999999999999998877776666677778888888987777899999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCCC
Q psy17388 177 VPVEKCANSVLDMIAAKGLIPA 198 (272)
Q Consensus 177 ~~~ee~~~~I~~~L~~~~~~~~ 198 (272)
.++++++++|++.|.++|++..
T Consensus 551 ~s~eevv~~Il~~l~~~~~~~~ 572 (573)
T 1m8p_A 551 QSVRSIVHEIILVLESQGFLER 572 (573)
T ss_dssp SCHHHHHHHHHHHHHHTTTTCC
T ss_pred CCHHHHHHHHHHHHHhcCCcCC
Confidence 9999999999999999998864
No 4
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.93 E-value=2.3e-24 Score=181.33 Aligned_cols=187 Identities=47% Similarity=0.826 Sum_probs=148.4
Q ss_pred hhhhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHH
Q psy17388 13 LRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLI-AQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFA 91 (272)
Q Consensus 13 ~r~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~-~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~ 91 (272)
.|......+|.+|+|+|+|||||||+++.|++.+. ..|+++.++|+|.++..+.....|...++..+++.+...+..++
T Consensus 16 ~r~~~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l~~~~~~~~~~r~~~~~~~~~~~~~~l 95 (211)
T 1m7g_A 16 ERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNENIRRIAEVAKLFA 95 (211)
T ss_dssp HHHHHHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhhccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 35666678899999999999999999999999997 56777999999998877655556776777777777766677778
Q ss_pred hCCCeEEEcCCCCcHHHHHHHHHHHH------hCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCC
Q psy17388 92 ECGFIALCSFVSPTAAARDRAREIHR------NANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAP 165 (272)
Q Consensus 92 ~~g~~VI~d~~~~~~~~r~~~~~~~~------~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~ 165 (272)
+.|..||+|+.+.+...++.++.+.. ..+.++++|||+||++++.+|+.++.+.+.+.+....+..+...|+.+
T Consensus 96 ~~g~~VI~d~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~~r~~~~~~r~~~~~~~~~~~~~y~~~ 175 (211)
T 1m7g_A 96 DSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKGLYKKAREGVIKEFTGISAPYEAP 175 (211)
T ss_dssp HTTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTCHHHHHHHTSSSSCBTTTBCCCCC
T ss_pred HCCCEEEEecCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhhhHHHHHHHHhcchhhhhhhhhhccCC
Confidence 88999999977666667888877776 345678999999999999999744444444544443444556678766
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCCCc
Q psy17388 166 KNPDLILETVNVPVEKCANSVLDMIAAKGLIPAR 199 (272)
Q Consensus 166 ~~~~~~Idt~~~~~ee~~~~I~~~L~~~~~~~~~ 199 (272)
..++++||++..++++++++|.+.+..+|+++..
T Consensus 176 ~~~~~~IDt~~~s~eev~~~I~~~l~~~~~~~~~ 209 (211)
T 1m7g_A 176 ANPEVHVKNYELPVQDAVKQIIDYLDTKGYLPAK 209 (211)
T ss_dssp SSCSEEEECSSSCHHHHHHHHHHHHHHTTCSCCC
T ss_pred CCCeEEEECCCCCHHHHHHHHHHHHHHcCCcccc
Confidence 6678999998889999999999999999988653
No 5
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=99.93 E-value=6.5e-24 Score=173.84 Aligned_cols=178 Identities=51% Similarity=0.946 Sum_probs=140.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEE
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIAL 98 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI 98 (272)
+++|.+|+|+|++||||||+++.|++.+...|++++.+|.|.++..+....++...++..+++++...+..+.+.|.+++
T Consensus 2 ~~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (179)
T 2pez_A 2 HMRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCI 81 (179)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhccccccccHHHHHHHHHHHHHHHHHCCCEEE
Confidence 35789999999999999999999999987778888889999887766555667766777777776655544557787788
Q ss_pred EcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCCCCCcEEEeCCCCC
Q psy17388 99 CSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVP 178 (272)
Q Consensus 99 ~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~~~~~~~Idt~~~~ 178 (272)
++...++...+..++.+....+.++.+|||+||++++.+|+.++.+.+.+.+.+.....+...|+.+..++++|||++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vid~~~~~ 161 (179)
T 2pez_A 82 TSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEKPEAPELVLKTDSCD 161 (179)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTSHHHHHHTTSSCSCBTTTBCCCCCSSCSEEEETTTSC
T ss_pred EecCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhhhHHHHhcccccccccCCccccCCCCCcEEEECCCCC
Confidence 88777766566666777666778889999999999999999776555555555444444556677676788999998889
Q ss_pred HHHHHHHHHHHHHhCCCC
Q psy17388 179 VEKCANSVLDMIAAKGLI 196 (272)
Q Consensus 179 ~ee~~~~I~~~L~~~~~~ 196 (272)
+++++++|.+.+.+.|++
T Consensus 162 ~~~~~~~i~~~l~~~~~~ 179 (179)
T 2pez_A 162 VNDCVQQVVELLQERDIV 179 (179)
T ss_dssp HHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 999999999999988774
No 6
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.93 E-value=6e-24 Score=175.12 Aligned_cols=175 Identities=35% Similarity=0.631 Sum_probs=141.4
Q ss_pred cCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeE
Q psy17388 18 EGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIA 97 (272)
Q Consensus 18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~V 97 (272)
..+++.+|+|+|+|||||||+++.|++.+...|..+.++|+|.++..+..+.+|...++..+++.+...+..+.+.|.+|
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~g~~v 88 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGAGFTREERLRHLKRIAWIARLLARNGVIV 88 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHhCCCEE
Confidence 34678999999999999999999999999888888889999998877766667887777777777666666667788899
Q ss_pred EEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCCCCCcEEEeCCCC
Q psy17388 98 LCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNV 177 (272)
Q Consensus 98 I~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~~~~~~~Idt~~~ 177 (272)
|++..+.+...++.++.++...+.++++|||++|++++.+|+.++.+.+.+...+..+...+..|+.|..++++||+++.
T Consensus 89 i~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~Id~~~~ 168 (186)
T 2yvu_A 89 ICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPKGLYKKALKGELENFTGITDPYEPPENPQLVLDTESN 168 (186)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHHHHHHHHHTTCCSSCHHHHSCCCCCSSCSEEEETTTS
T ss_pred EEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhhhhhhHHhhcchhhhhhhhhcccCCCCCcEEEECCCC
Confidence 99988777778888888887777889999999999999999865544333333444444456668876667899999888
Q ss_pred CHHHHHHHHHHHHHh
Q psy17388 178 PVEKCANSVLDMIAA 192 (272)
Q Consensus 178 ~~ee~~~~I~~~L~~ 192 (272)
++++++++|.+.+..
T Consensus 169 ~~~ev~~~I~~~l~~ 183 (186)
T 2yvu_A 169 TIEHNVSYLYSLVKA 183 (186)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999998864
No 7
>1r6x_A ATP:sulfate adenylyltransferase; APS kinase-like domain; 1.40A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5
Probab=99.89 E-value=5.5e-24 Score=192.85 Aligned_cols=68 Identities=19% Similarity=0.307 Sum_probs=65.4
Q ss_pred hcc--CCceecCchhHHHHHHHhhccccCccCCCCHHHHHhhhhhcccCCCCccceeEEEecChhhhhhc
Q psy17388 204 IEA--LPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVTGEDKQRL 271 (272)
Q Consensus 204 ~~~--~~~~~~~~~~~~~~~~~~~g~~~pl~gfm~~~~~~~v~~~~~l~~~~~~~~pi~l~~~~~~~~~~ 271 (272)
+.. ||+++|+++++||||+|++||||||+|||+++||+||+++|||+||++|||||||+|++++++.|
T Consensus 26 a~~~~lp~i~l~~~~l~dlell~~G~fsPL~GFM~~~dy~~V~~~~rL~dG~~wpiPI~L~v~~e~~~~l 95 (395)
T 1r6x_A 26 AQSSDILVWNLTPRQLCDIELILNGGFSPLTGFLNENDYSSVVTDSRLADGTLWTIPITLDVDEAFANQI 95 (395)
T ss_dssp HTCTTSEEEECCHHHHHHHHHHHBTTTTTCCEECCHHHHHHHHHHSBCTTSCBCCSCCCEEECHHHHHTC
T ss_pred hhcCCCCeEEcCHHHHHHHHHHhcCCccCCcccCCHHHHHHHHHhCcCCCCCCcceEEEEeCCHHHHhhc
Confidence 566 99999999999999999999999999999999999999999999999999999999999988765
No 8
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=99.88 E-value=5.2e-22 Score=189.03 Aligned_cols=177 Identities=39% Similarity=0.690 Sum_probs=143.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEE
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIAL 98 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI 98 (272)
++++.+|+|+|+|||||||+|+.|++.|...|+++.++|.|.+++.+..+..|...++..+++.+..++..+++.|..||
T Consensus 369 ~~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~~~~~f~~~er~~~l~~i~~~~~~~l~~G~~VI 448 (546)
T 2gks_A 369 HKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGLGFSKEDRITNILRVGFVASEIVKHNGVVI 448 (546)
T ss_dssp GGCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred cccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhcccccccHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 35678999999999999999999999998888889999999998877777788888887777777777888888999999
Q ss_pred EcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCCCCCcEEEeCCCCC
Q psy17388 99 CSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVP 178 (272)
Q Consensus 99 ~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~~~~~~~Idt~~~~ 178 (272)
++...++...|..+++++.. ..+++|||++|.+++.+|+.++.+.+.+.+.+..+..++..|+.+..++++|||++.+
T Consensus 449 ~d~~~~~~~~r~~~~~~l~~--~d~~vV~L~~~~e~~~~Rl~r~~~~~~~~~~i~~~~~vr~~~e~~~~adivIDts~~s 526 (546)
T 2gks_A 449 CALVSPYRSARNQVRNMMEE--GKFIEVFVDAPVEVCEERDVKGLYKKAKEGLIKGFTGVDDPYEPPVAPEVRVDTTKLT 526 (546)
T ss_dssp EECCCCCHHHHHHHHTTSCT--TCEEEEEEECCGGGHHHHCCSSHHHHC------CCBTTTBCCCCCSSCSEEEETTTSC
T ss_pred EEcCCCCHHHHHHHHHHhhc--CCEEEEEEeCCHHHHHHHhhccccccccHHHHHHHHhhhhccccccCCcEEEECCCCC
Confidence 99888887777777766543 2468899999999999999766555444445555666677787766788999998889
Q ss_pred HHHHHHHHHHHHHhCCCCC
Q psy17388 179 VEKCANSVLDMIAAKGLIP 197 (272)
Q Consensus 179 ~ee~~~~I~~~L~~~~~~~ 197 (272)
+++++++|.+.|.++|++.
T Consensus 527 ~eev~~~I~~~L~~~g~~~ 545 (546)
T 2gks_A 527 PEESALKILEFLKKEGFIK 545 (546)
T ss_dssp HHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHcCCcc
Confidence 9999999999999988874
No 9
>1v47_A ATP sulfurylase; product binding complex, zinc, riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; HET: ADX; 2.49A {Thermus thermophilus} SCOP: b.122.1.3 c.26.1.5
Probab=99.87 E-value=4.5e-23 Score=185.08 Aligned_cols=62 Identities=31% Similarity=0.406 Sum_probs=59.8
Q ss_pred ccCCceecCchhHHHHHHHhhccccCccCCCCHHHHHhhhhhcccCCCCccceeEEEecChh
Q psy17388 205 EALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVTGE 266 (272)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~g~~~pl~gfm~~~~~~~v~~~~~l~~~~~~~~pi~l~~~~~ 266 (272)
..+|++.|+++++|||++|++||||||+|||+++||+||+++|||+||++|||||||+|+++
T Consensus 3 ~~lp~i~l~~~~~~dlell~~G~fsPL~GfM~~~d~~~v~~~~rl~~G~~wpiPi~L~v~~~ 64 (349)
T 1v47_A 3 ETLPALEIGEDERLDLENLATGAFFPVKGFMTREEALSVAHEMRLPTGEVWTIPILLQFREK 64 (349)
T ss_dssp -CCCEEECCHHHHHHHHHHHTTTTTTCCSBCCHHHHHHHHHHSBCTTSCBCCSCCCEEESSC
T ss_pred ccCceeecCHHHHHHHHHHhcCCccCccccCCHHHHHHHHHhCcCCCCCCcCeEEEecCChh
Confidence 46899999999999999999999999999999999999999999999999999999999886
No 10
>1jhd_A Sulfate adenylyltransferase; sulfurylase, APS, chemoautotroph, bromide; 1.70A {Sulfur-oxidizing endosymbiont ofriftia pachyptila} SCOP: b.122.1.3 c.26.1.5
Probab=99.87 E-value=4.2e-23 Score=187.86 Aligned_cols=63 Identities=22% Similarity=0.290 Sum_probs=61.1
Q ss_pred hhccCCceecCchhHHHHHHHhhccccCccCCCCHHHHHhhhhhcccCCCCccceeEEEecCh
Q psy17388 203 FIEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVTG 265 (272)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~g~~~pl~gfm~~~~~~~v~~~~~l~~~~~~~~pi~l~~~~ 265 (272)
.+..||++.|+++++|||++|++||||||+|||+++||+||+++|||+||++|||||||+|++
T Consensus 27 ~a~~lp~i~l~~~~~~dlell~~G~fsPL~GFM~~~d~~~v~~~~rl~~G~~wpiPi~L~v~~ 89 (396)
T 1jhd_A 27 EAESLPSVVISSQAAGNAVMMGAGYFSPLQGFMNVADAMGAAEKMTLSDGSFFPVPVLCLLEN 89 (396)
T ss_dssp HHTTSCEEECCHHHHHHHHHHHTTTTTTCCEECCHHHHHHHHHHSBCTTSCBCCSCCCCEESC
T ss_pred HhccCCeEecCHHHHHHHHHHhcCCccCCcccCCHHHHHHHHHhCcCCCCCCccEEEEEecch
Confidence 367899999999999999999999999999999999999999999999999999999999987
No 11
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=99.86 E-value=9.1e-23 Score=191.94 Aligned_cols=68 Identities=19% Similarity=0.307 Sum_probs=65.3
Q ss_pred hcc--CCceecCchhHHHHHHHhhccccCccCCCCHHHHHhhhhhcccCCCCccceeEEEecChhhhhhc
Q psy17388 204 IEA--LPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVTGEDKQRL 271 (272)
Q Consensus 204 ~~~--~~~~~~~~~~~~~~~~~~~g~~~pl~gfm~~~~~~~v~~~~~l~~~~~~~~pi~l~~~~~~~~~~ 271 (272)
+.. ||+++|+++++||+|+|++||||||+|||+++||+||+++|||+||++|||||||+|++++++.|
T Consensus 27 a~~~~lp~i~l~~~~~~dlell~~G~fsPL~GfM~~~d~~~v~~~~rl~~G~~w~iPi~L~v~~~~~~~l 96 (511)
T 1g8f_A 27 AQSSDILVWNLTPRQLCDIELILNGGFSPLTGFLNENDYSSVVTDSRLADGTLWTIPITLDVDEAFANQI 96 (511)
T ss_dssp HTCTTSEEEECCHHHHHHHHHHHTTTTTTCCEECCHHHHHHHHHHSBCTTCCBCCSCCCEEECHHHHTTC
T ss_pred hhcCCCCeEEcCHHHHHHHHHHhcCCccCccccCCHHHHHHHHHhCcCCCCCCcceeEEEeCCHHHHhhc
Confidence 556 99999999999999999999999999999999999999999999999999999999999988765
No 12
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=99.86 E-value=7.4e-21 Score=180.94 Aligned_cols=177 Identities=35% Similarity=0.629 Sum_probs=124.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcC-CCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEE
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQG-IPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIAL 98 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g-~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI 98 (272)
.++.+|+|+|++||||||+++.|+..+...+ ..+.++|+|.++..+..+.+|...++..+++++..+...+...+.+++
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l~~~~~ivi 446 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEITKNRGIAI 446 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHhcCCEEE
Confidence 5789999999999999999999999996543 357789999987766666778877777777777777777777888888
Q ss_pred EcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCCCCCcEEEeCCCCC
Q psy17388 99 CSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVP 178 (272)
Q Consensus 99 ~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~~~~~~~Idt~~~~ 178 (272)
+....+....++.++++++..| .++.|||++|.+++.+|..++.+.+.+.+.+..+...+..|+.|..++++|||+..+
T Consensus 447 ~~~~~~~~~~r~~~r~lL~~~g-~f~~V~L~~~~e~~~~R~~r~l~~~~~~~~i~~l~~~r~~~e~P~~adl~Idt~~~s 525 (552)
T 3cr8_A 447 CAPIAPYRQTRRDVRAMIEAVG-GFVEIHVATPIETCESRDRKGLYAKARAGLIPEFTGVSDPYEVPETPELAIDTTGLA 525 (552)
T ss_dssp ECCCCCCHHHHHHHHHHHHTTS-EEEEEEECC-----------------------------CCCCCCSSCSEEECCSSCC
T ss_pred EecCCccHHHHHHHHHHHHHcC-CEEEEEEcCCHHHHHHhccccccccccHhHHHHHHhccccccCCCCCCEEEECCCCC
Confidence 8777666677888888888777 789999999999999998777776666666777777888898888889999999999
Q ss_pred HHHHHHHHHHHHHhCCCCC
Q psy17388 179 VEKCANSVLDMIAAKGLIP 197 (272)
Q Consensus 179 ~ee~~~~I~~~L~~~~~~~ 197 (272)
+++++++|++.|.+.+++.
T Consensus 526 ~~e~v~~Il~~L~~~~~~~ 544 (552)
T 3cr8_A 526 IDEAVQQILLKLEHEGYLR 544 (552)
T ss_dssp HHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHhcCccc
Confidence 9999999999999877654
No 13
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=99.86 E-value=1e-22 Score=193.67 Aligned_cols=68 Identities=22% Similarity=0.255 Sum_probs=65.7
Q ss_pred hccCCceecCchhHHHHHHHhhccccCccCCCCHHHHHhhhhhcccCCCCccceeEEEecChhhhhhc
Q psy17388 204 IEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVTGEDKQRL 271 (272)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~g~~~pl~gfm~~~~~~~v~~~~~l~~~~~~~~pi~l~~~~~~~~~~ 271 (272)
+..+|+++|+++++||+|+|++||||||+|||+++||+||+++|||+||++|||||||+|++++++.|
T Consensus 29 a~~~~~~~l~~~~~~dlell~~G~~sPl~gfm~~~d~~~v~~~~~l~~g~~~~~Pi~l~v~~~~~~~l 96 (552)
T 3cr8_A 29 ALSLPSLDLDWQQQCELEMLMTGAYSPLTGFMTRAQCARVESAQQLDDGSFWPSPITLTSRDRALADR 96 (552)
T ss_dssp HHTSCEEECCHHHHHHHHHHHHTTTTTCCEECCHHHHHHHHHHCBCTTCCBCCSCCCEEECCGGGTTC
T ss_pred hccCCeEecCHHHHHHHHHHhcCCccCCcccCCHHHHHHHHHhCcCCCCCCcceEEEEeCCHhHhhcc
Confidence 67899999999999999999999999999999999999999999999999999999999999988765
No 14
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=99.86 E-value=1.4e-22 Score=192.98 Aligned_cols=68 Identities=24% Similarity=0.331 Sum_probs=65.4
Q ss_pred hccCCceecCchhHHHHHHHhhccccCccCCCCHHHHHhhhhhcccCCCCccceeEEEecChhhhhhc
Q psy17388 204 IEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVTGEDKQRL 271 (272)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~g~~~pl~gfm~~~~~~~v~~~~~l~~~~~~~~pi~l~~~~~~~~~~ 271 (272)
+..+|++.|+++++|||++|++||||||+|||+++||+||+++|||+||++|||||||+|++++++.|
T Consensus 4 ~~~~~~~~~~~~~~~dl~~l~~G~~sPl~gfm~~~d~~~v~~~~~l~~g~~~~~Pi~l~v~~~~~~~l 71 (546)
T 2gks_A 4 IKYLKSIQISQRSVLDLELLAVGAFTPLDRFMGEEDYRNVVESMRLKSGTLFPIPITLPMEKEIAKDL 71 (546)
T ss_dssp CCSSEEEECCHHHHHHHHHHHTTTTTTCCSSCCHHHHHHHHHHSBCTTSCBCCSCCCEEECHHHHTTC
T ss_pred cccCCeEecCHHHHHHHHHHhcCCcCCccccCCHHHHHHHHHhCcCCCCCCcceeEEEeCCHHHHhhc
Confidence 56799999999999999999999999999999999999999999999999999999999999988765
No 15
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=99.85 E-value=1.7e-22 Score=193.36 Aligned_cols=69 Identities=26% Similarity=0.311 Sum_probs=66.3
Q ss_pred hhccCCceecCchhHHHHHHHhhccccCccCCCCHHHHHhhhhhcccCCCCccceeEEEecChhhhhhc
Q psy17388 203 FIEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVTGEDKQRL 271 (272)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~g~~~pl~gfm~~~~~~~v~~~~~l~~~~~~~~pi~l~~~~~~~~~~ 271 (272)
.+..||++.|+++++|||++|++||||||+|||+++||+||+++|||+||++|||||||+|++++++.|
T Consensus 27 ~~~~~~~~~l~~~~~~dl~~l~~G~~sPl~gfm~~~d~~~v~~~~~l~~g~~~~~Pi~l~v~~~~~~~l 95 (573)
T 1m8p_A 27 EAESLPAVTLTERQLCDLELIMNGGFSPLEGFMNQADYDRVCEDNRLADGNVFSMPITLDASQEVIDEK 95 (573)
T ss_dssp HHTTSCEEEECHHHHHHHHHHHTSTTTTCCEECCHHHHHHHHHHSBCTTSCBCCSCCCCEECHHHHHHT
T ss_pred HhccCCeEEeCHHHHHHHHHHhcCCcCCCcccCCHHHHHHHHHhCcCCCCCCcceeEEEeCCHHHHHhh
Confidence 377899999999999999999999999999999999999999999999999999999999999988776
No 16
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.81 E-value=1.7e-18 Score=150.20 Aligned_cols=164 Identities=14% Similarity=0.282 Sum_probs=117.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHH-HHHHHHHHhCCCeEEE
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRA-AECAKMFAECGFIALC 99 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i-~~~~~~~~~~g~~VI~ 99 (272)
++++|+|+|+|||||||+|+.|++.|...|+.+++++.|.++..+.. |... ....++.. ...+...++. ..||+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~---~~~~-~e~~~~~~~~~~i~~~l~~-~~vIi 77 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPV---WKEK-YEEFIKKSTYRLIDSALKN-YWVIV 77 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSS---CCGG-GHHHHHHHHHHHHHHHHTT-SEEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhh---hhHH-HHHHHHHHHHHHHHHHhhC-CEEEE
Confidence 46799999999999999999999998777888877899988765533 4332 22222222 2334445555 78888
Q ss_pred cCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCC------CCCcEEEe
Q psy17388 100 SFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAP------KNPDLILE 173 (272)
Q Consensus 100 d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~------~~~~~~Id 173 (272)
|........+..+.+++...+.++.+|||+||++++.+|+.+|.. ......+..+...|+.| ..++++||
T Consensus 78 D~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~~----~~~~~~l~~~~~~~e~~~~~~~~~~~~~~Id 153 (260)
T 3a4m_A 78 DDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGE----KIPNEVIKKMYEKFDEPGKKYKWDEPFLIID 153 (260)
T ss_dssp CSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTTC----SSCHHHHHHHHHHCCCTTSSCGGGCCSEEEE
T ss_pred eCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCCC----CCCHHHHHHHHHHhcCccccCCCCCCEEEEe
Confidence 887777778888888888888889999999999999999965521 00001122233345543 24679999
Q ss_pred CCC-CCHHHHHHHHHHHHHhC
Q psy17388 174 TVN-VPVEKCANSVLDMIAAK 193 (272)
Q Consensus 174 t~~-~~~ee~~~~I~~~L~~~ 193 (272)
++. .+++++++.|.+.+...
T Consensus 154 ~~~~~~~~ei~~~I~~~l~~~ 174 (260)
T 3a4m_A 154 TTKDIDFNEIAKKLIEKSKEI 174 (260)
T ss_dssp TTSCCCHHHHHHHHHHHHTSC
T ss_pred CCCCCCHHHHHHHHHhcccCC
Confidence 987 68999999999988764
No 17
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.80 E-value=7.6e-19 Score=142.99 Aligned_cols=159 Identities=20% Similarity=0.193 Sum_probs=102.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccccc-------CCCC-------HHHHHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINAN-------LAFS-------EEDRNENVRRAAEC 86 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~-------~~~~-------~~~~~~~~~~i~~~ 86 (272)
+|++|+|+|+|||||||+|++|++.+ +.+++.++.|.++..+... ..+. .......+..+...
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVL---PEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEG 78 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHS---SSCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc---CCCeEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHHHHH
Confidence 46799999999999999999999998 5566677787665432211 0110 11112333444445
Q ss_pred HHHHHhCCCeEEEcCCCC-cHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcccccccc-ccccCCC
Q psy17388 87 AKMFAECGFIALCSFVSP-TAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTG-VSQPYEA 164 (272)
Q Consensus 87 ~~~~~~~g~~VI~d~~~~-~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~-~~~~ye~ 164 (272)
+..+.+.|..||++.... ....++.+++.+.. .++..|||+||.+++.+|+.+|.. +...... ....+..
T Consensus 79 ~~~~~~~g~~vi~~~~~~~~~~~~~~~~~~~~~--~~~~~v~l~~~~e~l~~R~~~r~~------~~~~~~~~~~~~~~~ 150 (178)
T 1qhx_A 79 VVAMARAGARIIIDDVFLGGAAAQERWRSFVGD--LDVLWVGVRCDGAVAEGRETARGD------RVAGMAAKQAYVVHE 150 (178)
T ss_dssp HHHHHHTTCEEEEEECCTTTHHHHHHHHHHHTT--CCEEEEEEECCHHHHHHHHHHTSS------SCTTHHHHHTTGGGT
T ss_pred HHHHHhcCCeEEEEeccccChHHHHHHHHHhcC--CcEEEEEEECCHHHHHHHHHhhCC------cccchhhhhchhhcc
Confidence 666777887777776542 22345566666543 356789999999999999965421 1111100 0111122
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHHHH
Q psy17388 165 PKNPDLILETVNVPVEKCANSVLDMI 190 (272)
Q Consensus 165 ~~~~~~~Idt~~~~~ee~~~~I~~~L 190 (272)
+..++++|||++.++++++++|++.+
T Consensus 151 ~~~~d~~idt~~~~~~~~~~~I~~~l 176 (178)
T 1qhx_A 151 GVEYDVEVDTTHKESIECAWAIAAHV 176 (178)
T ss_dssp TCCCSEEEETTSSCHHHHHHHHHTTC
T ss_pred CCCCcEEEECCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998765
No 18
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.77 E-value=2.3e-18 Score=143.40 Aligned_cols=160 Identities=16% Similarity=0.154 Sum_probs=107.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccc-----ccccCCCCHHHHHHHHHHHHHHHHHHHhCC
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNG-----INANLAFSEEDRNENVRRAAECAKMFAECG 94 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~-----l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g 94 (272)
+++++|+|+|+|||||||+|+.|++.+ +..++|.|.+... +..+..+.......+++.+.+ .+..|
T Consensus 16 ~~~~~I~l~G~~GsGKSTla~~L~~~l-----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~----~~~~~ 86 (202)
T 3t61_A 16 RFPGSIVVMGVSGSGKSSVGEAIAEAC-----GYPFIEGDALHPPENIRKMSEGIPLTDDDRWPWLAAIGE----RLASR 86 (202)
T ss_dssp CCSSCEEEECSTTSCHHHHHHHHHHHH-----TCCEEEGGGGCCHHHHHHHHHTCCCCHHHHHHHHHHHHH----HHTSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh-----CCEEEeCCcCcchhhHHHHhcCCCCCchhhHHHHHHHHH----HHhcC
Confidence 446799999999999999999999999 5667888887532 122344555444444444332 23667
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCC--CCCcEEE
Q psy17388 95 FIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAP--KNPDLIL 172 (272)
Q Consensus 95 ~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~--~~~~~~I 172 (272)
..||++........++.+.... +.++.+|||++|.+++.+|+.+|... ......+......++++ ..++++|
T Consensus 87 ~~vivd~~~~~~~~~~~l~~~~---~~~~~vi~l~~~~e~~~~Rl~~R~~~---~~~~~~~~~~~~~~~~~~~~~~~~~I 160 (202)
T 3t61_A 87 EPVVVSCSALKRSYRDKLRESA---PGGLAFVFLHGSESVLAERMHHRTGH---FMPSSLLQTQLETLEDPRGEVRTVAV 160 (202)
T ss_dssp SCCEEECCCCSHHHHHHHHHTS---TTCCEEEEEECCHHHHHHHHHHHHSS---CCCHHHHHHHHHHCCCCTTSTTEEEE
T ss_pred CCEEEECCCCCHHHHHHHHHhc---CCCeEEEEEeCCHHHHHHHHHHhhcc---CCCHHHHHHHHHhcCCCCCCCCeEEE
Confidence 7777776665556666655443 34578899999999999999655210 00001111122223332 2357899
Q ss_pred eCCCCCHHHHHHHHHHHHHhCCC
Q psy17388 173 ETVNVPVEKCANSVLDMIAAKGL 195 (272)
Q Consensus 173 dt~~~~~ee~~~~I~~~L~~~~~ 195 (272)
|++ .++++++++|.+.|.+.|+
T Consensus 161 d~~-~~~~e~~~~I~~~l~~~~~ 182 (202)
T 3t61_A 161 DVA-QPLAEIVREALAGLARLAE 182 (202)
T ss_dssp ESS-SCHHHHHHHHHHHHHHHHH
T ss_pred eCC-CCHHHHHHHHHHHHHHhhh
Confidence 987 8999999999999998765
No 19
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.76 E-value=1.4e-17 Score=136.93 Aligned_cols=168 Identities=14% Similarity=0.154 Sum_probs=101.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHH-----HHHHHHHHHHHHHHHhCC
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDR-----NENVRRAAECAKMFAECG 94 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~g 94 (272)
.+|.+|+|+|+|||||||+|+.|++.+ +..+++.|.++..+........... ...+..+...+...++.|
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l-----~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 77 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL-----RLPLLSKDAFKEVMFDGLGWSDREWSRRVGATAIMMLYHTAATILQSG 77 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH-----TCCEEEHHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc-----CCeEecHHHHHHHHHHhcCccchHHHHHhhHHHHHHHHHHHHHHHhCC
Confidence 467899999999999999999999999 4556788888765432222211110 111222334455566778
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhh-ccc-cc------cccccccCCCCC
Q psy17388 95 FIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKARE-GKI-KS------FTGVSQPYEAPK 166 (272)
Q Consensus 95 ~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~-~~~-~~------~~~~~~~ye~~~ 166 (272)
..||+|...........+..+....+.++++|||++|++++.+|+.+|.....|. ... .. +..+...|+++.
T Consensus 78 ~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (193)
T 2rhm_A 78 QSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIAQGARHPGHCDDRSPADLELVRSRGDIPPLP 157 (193)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHHTTCC--------CHHHHHHHHHSCCCCCCC
T ss_pred CeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcCccccCcccccCccCcchhhHHHHhcCCCcc
Confidence 7888876653222223444455555678899999999999999997663211111 000 01 112233355432
Q ss_pred --CCcEEEeCCCC---CHHHHHHHHHHHHHh
Q psy17388 167 --NPDLILETVNV---PVEKCANSVLDMIAA 192 (272)
Q Consensus 167 --~~~~~Idt~~~---~~ee~~~~I~~~L~~ 192 (272)
.++++|||+.. ..+++++.|.+.+..
T Consensus 158 ~~~~~~~Idt~~~~~~~~~~i~~~i~~~l~~ 188 (193)
T 2rhm_A 158 LGGPLLTVDTTFPEQIDMNAIVQWVRQHLQS 188 (193)
T ss_dssp CCSCEEEEECSSGGGCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCcccCHHHHHHHHHHHHHh
Confidence 46799999874 355666666666554
No 20
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.76 E-value=3.1e-17 Score=133.23 Aligned_cols=160 Identities=18% Similarity=0.259 Sum_probs=104.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccc-----cccCCCCHHHHHHHHHHHHHHHHHHHhCC
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGI-----NANLAFSEEDRNENVRRAAECAKMFAECG 94 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l-----~~~~~~~~~~~~~~~~~i~~~~~~~~~~g 94 (272)
+++.+|+|+|+|||||||+++.|+..+ +..++|+|.+.... ..+..+.......+++.+...+..++..|
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-----HAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTN 80 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-----TCEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-----CcEEEeCccccchHHHHHhhcCcCCCccccccHHHHHHHHHHHHHhcC
Confidence 567899999999999999999999998 56788998875321 11233444444455555555555566667
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCC---CCCcEE
Q psy17388 95 FIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAP---KNPDLI 171 (272)
Q Consensus 95 ~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~---~~~~~~ 171 (272)
..+|++........++. ++..+.++.+|||+||++++.+|+.+|..... ....+......|+++ ..++++
T Consensus 81 ~~~vi~~~~~~~~~~~~----l~~~~~~~~vv~l~~~~e~~~~R~~~R~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 153 (175)
T 1knq_A 81 KVSLIVCSALKKHYRDL----LREGNPNLSFIYLKGDFDVIESRLKARKGHFF---KTQMLVTQFETLQEPGADETDVLV 153 (175)
T ss_dssp SEEEEECCCCSHHHHHH----HHTTCTTEEEEEEECCHHHHHHHHHTSTTCCC---CHHHHHHHHHHCCCCCTTCTTEEE
T ss_pred CcEEEEeCchHHHHHHH----HHhcCCCEEEEEEECCHHHHHHHHHhccCCCC---chHHHHHHHHhhhCcccCCCCeEE
Confidence 66776655544444443 33344466889999999999999976521000 000000011123332 246899
Q ss_pred EeCCCCCHHHHHHHHHHHHHh
Q psy17388 172 LETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 172 Idt~~~~~ee~~~~I~~~L~~ 192 (272)
|||+ .++++++++|.+.+..
T Consensus 154 Id~~-~~~~~~~~~i~~~l~~ 173 (175)
T 1knq_A 154 VDID-QPLEGVVASTIEVIKK 173 (175)
T ss_dssp EECS-SCHHHHHHHHHHHHHC
T ss_pred EeCC-CCHHHHHHHHHHHHhc
Confidence 9987 7999999999998864
No 21
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.75 E-value=1.5e-17 Score=138.37 Aligned_cols=164 Identities=18% Similarity=0.226 Sum_probs=106.1
Q ss_pred hcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccc-----ccccCCCCHHHHHHHHHHHHHHHHHHH
Q psy17388 17 KEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNG-----INANLAFSEEDRNENVRRAAECAKMFA 91 (272)
Q Consensus 17 ~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~-----l~~~~~~~~~~~~~~~~~i~~~~~~~~ 91 (272)
+...+|.+|+|+|++||||||+++.|+..+ +..++++|.+... ...+..+.......++..+...+....
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 98 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET-----GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMDARA 98 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH-----CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh-----CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHHHHH
Confidence 344578899999999999999999999998 5678999887532 112344555555555555555565566
Q ss_pred hCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCC--CCCc
Q psy17388 92 ECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAP--KNPD 169 (272)
Q Consensus 92 ~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~--~~~~ 169 (272)
..|..+|++........++.++ ....++.+|||+||.+++.+|+.+|... ......+......++++ ..++
T Consensus 99 ~~g~~viid~~~~~~~~~~~l~----~~~~~~~vv~l~~~~e~l~~Rl~~R~~~---~~~~~~l~~~~~~~~~~~~~~~~ 171 (200)
T 4eun_A 99 DAGVSTIITCSALKRTYRDVLR----EGPPSVDFLHLDGPAEVIKGRMSKREGH---FMPASLLQSQLATLEALEPDESG 171 (200)
T ss_dssp HTTCCEEEEECCCCHHHHHHHT----TSSSCCEEEEEECCHHHHHHHHTTCSCC---SSCGGGHHHHHHHCCCCCTTSCE
T ss_pred hcCCCEEEEchhhhHHHHHHHH----HhCCceEEEEEeCCHHHHHHHHHhcccC---CCCHHHHHHHHHHhCCCCCCCCe
Confidence 6776666665555444444433 3233568899999999999999655210 00111111122223332 2368
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388 170 LILETVNVPVEKCANSVLDMIAAK 193 (272)
Q Consensus 170 ~~Idt~~~~~ee~~~~I~~~L~~~ 193 (272)
++|||+. ++++++++|.+.+...
T Consensus 172 ~~Id~~~-~~~e~~~~I~~~l~~~ 194 (200)
T 4eun_A 172 IVLDLRQ-PPEQLIERALTWLDIA 194 (200)
T ss_dssp EEEETTS-CHHHHHHHHHHHHCCC
T ss_pred EEEECCC-CHHHHHHHHHHHHHhc
Confidence 9999964 9999999999998753
No 22
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.72 E-value=8.3e-18 Score=137.30 Aligned_cols=164 Identities=10% Similarity=0.086 Sum_probs=93.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc----cccccccc-cCCCCHHHHHHHHHHHHHHHHHHHh-C
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD----NLRNGINA-NLAFSEEDRNENVRRAAECAKMFAE-C 93 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D----~i~~~l~~-~~~~~~~~~~~~~~~i~~~~~~~~~-~ 93 (272)
++|++|+|+|+|||||||+|+.|++.+ |.+++ +|.+ .++..+.. ...|.. ...+.+.+.+.+..+++ .
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l---~~~~i-~d~~~~g~~i~~~~~~g~~~~~~--~~~~~~~~~~~i~~~l~~~ 76 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERL---PGSFV-FEPEEMGQALRKLTPGFSGDPQE--HPMWIPLMLDALQYASREA 76 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHS---TTCEE-CCTHHHHHHHHHTSTTCCSCGGG--STTHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc---CCCEE-EchhhhHHHHHHhCccccchhhh--hHHHHHHHHHHHHHHHHhC
Confidence 467899999999999999999999998 44433 3532 22222211 111111 11111222233333344 3
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCCCCCcEEEe
Q psy17388 94 GFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILE 173 (272)
Q Consensus 94 g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~~~~~~~Id 173 (272)
|..||++........+..+...+...|..+..|||+||++++.+|+.+|..... ....+..+...++++..+. +||
T Consensus 77 g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~~r~~---~~~~~~~~~~~~~~~~~~~-~Id 152 (183)
T 2vli_A 77 AGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDGQPQV---NVGTVEDRLNELRGEQFQT-HID 152 (183)
T ss_dssp SSCEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC----C---CHHHHHHHHHHHTSGGGCS-EEE
T ss_pred CCcEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhccccch---hHHHHHHHHHhhcccccce-Eee
Confidence 777777765555556666666676667666779999999999999976531100 0011111222222221234 999
Q ss_pred CCCCCHHHHHHHHHHHHHhC
Q psy17388 174 TVNVPVEKCANSVLDMIAAK 193 (272)
Q Consensus 174 t~~~~~ee~~~~I~~~L~~~ 193 (272)
+++.++++++++|.+.+...
T Consensus 153 ~~~~~~~~~~~~I~~~l~~~ 172 (183)
T 2vli_A 153 TAGLGTQQVAEQIAAQVGLT 172 (183)
T ss_dssp CTTCCHHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 98789999999999999754
No 23
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.72 E-value=9e-18 Score=136.48 Aligned_cols=161 Identities=14% Similarity=0.076 Sum_probs=93.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHH-HHHHcCCCEEEecCcccccccccc-----CCCCHHHHHHHHHHHHHHHHHHH---h
Q psy17388 22 NICLLFPGLSGAGKTSISFQIES-YLIAQGIPAYALDGDNLRNGINAN-----LAFSEEDRNENVRRAAECAKMFA---E 92 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~-~L~~~g~~~~~ld~D~i~~~l~~~-----~~~~~~~~~~~~~~i~~~~~~~~---~ 92 (272)
|.+|+|+|+|||||||+|+.|++ .+ ++.+++.|.++..+... ..|.........+.+...+...+ .
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~-----~~~~i~~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 76 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNP-----GFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGD 76 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHST-----TEEEECHHHHHHHHTTSCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCS
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcC-----CcEEecHHHHHHHhhCCCccchhhhchhhhhHHHHHHHHHHHHHHhhcc
Confidence 57899999999999999999998 44 67889999887654331 12543322222233345566666 7
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCCC-CCcEE
Q psy17388 93 CGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPK-NPDLI 171 (272)
Q Consensus 93 ~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~~-~~~~~ 171 (272)
.|..||+|..+.....+..+.++++..|.++.+|||++|.+++.+|+.+|... ......+......|+.+. .+.++
T Consensus 77 ~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~---~~~~~~i~~~~~~~~~~~~~~~~~ 153 (181)
T 1ly1_A 77 SVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTK---AVPIDVLRSMYKSMREYLGLPVYN 153 (181)
T ss_dssp SCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGGG---CCCHHHHHHHHHHHHHHHTCCCC-
T ss_pred CCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhccccC---CCCHHHHHHHHHHhhccCCCCccc
Confidence 78899999877666778888887777787888999999999999999765311 000011122223344332 22356
Q ss_pred EeCCCCCHHHHHHHHHHHHHh
Q psy17388 172 LETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 172 Idt~~~~~ee~~~~I~~~L~~ 192 (272)
+|++. +++++..|...+..
T Consensus 154 id~~~--~~~v~~~i~~~l~~ 172 (181)
T 1ly1_A 154 GTPGK--PKAVIFDVDGTLAK 172 (181)
T ss_dssp ---------------------
T ss_pred cCCCC--Cceeeehhhhhhhc
Confidence 76643 36677777666554
No 24
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=1.4e-16 Score=132.33 Aligned_cols=164 Identities=14% Similarity=0.102 Sum_probs=93.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc-cCC-CCHHHHHHHHHHH-HHHHHHHHhCCCe
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA-NLA-FSEEDRNENVRRA-AECAKMFAECGFI 96 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~-~~~-~~~~~~~~~~~~i-~~~~~~~~~~g~~ 96 (272)
.++.+|+|+|+|||||||+++.|++.+ +..++|.|.+...... ... +........++.+ ..+...+...+..
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l-----~~~~i~~d~~~~~~~g~~i~~~~~~~~~~~~~~~e~~~l~~l~~~~~~ 97 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKL-----NVPFIDLDWYIEERFHKTVGELFTERGEAGFRELERNMLHEVAEFENV 97 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH-----TCCEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCSSE
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHc-----CCCEEcchHHHHHHhCCcHHHHHHhcChHHHHHHHHHHHHHHhhcCCc
Confidence 356799999999999999999999999 4556787776432211 100 1111223333333 2344455555556
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhh-hhhhhhhhhc-cccc-cccccccCCC----CCCCc
Q psy17388 97 ALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDV-KGHYKKAREG-KIKS-FTGVSQPYEA----PKNPD 169 (272)
Q Consensus 97 VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~-~r~~~~~r~~-~~~~-~~~~~~~ye~----~~~~~ 169 (272)
||..+... ....+.+. .+.. ...+|||++|++++.+|+. .+..+....+ .... ...+...|+. +..++
T Consensus 98 vi~~ggg~-~~~~~~~~-~l~~---~~~vi~L~~~~e~l~~Rl~~~~~~Rp~~~~~~~~~~~~~i~~~~~~r~~~y~~ad 172 (199)
T 3vaa_A 98 VISTGGGA-PCFYDNME-FMNR---TGKTVFLNVHPDVLFRRLRIAKQQRPILQGKEDDELMDFIIQALEKRAPFYTQAQ 172 (199)
T ss_dssp EEECCTTG-GGSTTHHH-HHHH---HSEEEEEECCHHHHHHHHHHTGGGCGGGTTCCHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred EEECCCcE-EccHHHHH-HHHc---CCEEEEEECCHHHHHHHHhcCCCCCCCcCCCChhhHHHHHHHHHHHHHHHHhhCC
Confidence 66543221 11111121 2222 2378999999999999997 3311000000 0000 0111111110 12378
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388 170 LILETVNVPVEKCANSVLDMIAAK 193 (272)
Q Consensus 170 ~~Idt~~~~~ee~~~~I~~~L~~~ 193 (272)
++|||++.++++++++|.+.+.+.
T Consensus 173 ~~Idt~~~s~ee~~~~I~~~l~~~ 196 (199)
T 3vaa_A 173 YIFNADELEDRWQIESSVQRLQEL 196 (199)
T ss_dssp EEEECCCCSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999998753
No 25
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.62 E-value=1.3e-16 Score=130.65 Aligned_cols=157 Identities=18% Similarity=0.156 Sum_probs=91.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccC-C-CCHHHHHHHHHHH-HHHHHHHHhCCCeE
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANL-A-FSEEDRNENVRRA-AECAKMFAECGFIA 97 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~-~-~~~~~~~~~~~~i-~~~~~~~~~~g~~V 97 (272)
++.+|+|+|+|||||||+|+.|++.+ ++.++|.|.+........ . +........++.+ ..+...+......|
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l-----~~~~i~~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v 78 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT-----KRILYDSDKEIEKRTGADIAWIFEMEGEAGFRRREREMIEALCKLDNII 78 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH-----CCCEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh-----CCCEEEChHHHHHHcCCChhhHHHHhCHHHHHHHHHHHHHHHHhcCCcE
Confidence 35689999999999999999999999 566788887755332110 0 0011122333333 23444455555555
Q ss_pred EEcCCC-C-cHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhh--hhhhhhhhhhccccc---cccccccCC---CC--
Q psy17388 98 LCSFVS-P-TAAARDRAREIHRNANLEFFEVFVNTPVEICEQRD--VKGHYKKAREGKIKS---FTGVSQPYE---AP-- 165 (272)
Q Consensus 98 I~d~~~-~-~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl--~~r~~~~~r~~~~~~---~~~~~~~ye---~~-- 165 (272)
|..+.. . ....++ .+...+ ++|||++|++++.+|+ ..+. .|. .... ...+...+. +.
T Consensus 79 i~~gg~~~~~~~~~~----~l~~~~---~vi~L~~~~e~l~~Rl~~~~~~---~rp-~~~~~~~~~~l~~~~~~r~~~y~ 147 (185)
T 3trf_A 79 LATGGGVVLDEKNRQ----QISETG---VVIYLTASIDTQLKRIGQKGEM---RRP-LFIKNNSKEKLQQLNEIRKPLYQ 147 (185)
T ss_dssp EECCTTGGGSHHHHH----HHHHHE---EEEEEECCHHHHHHHHHCCTTC---SSC-CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCceecCHHHHH----HHHhCC---cEEEEECCHHHHHHHHhhcCCC---CCC-CCCCCCHHHHHHHHHHHHHHHHh
Confidence 554322 1 122333 333323 7899999999999999 4321 110 0000 011111111 11
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388 166 KNPDLILETVNVPVEKCANSVLDMIAAK 193 (272)
Q Consensus 166 ~~~~~~Idt~~~~~ee~~~~I~~~L~~~ 193 (272)
..++++|||++.++++++++|++.+...
T Consensus 148 ~~ad~~Idt~~~~~~e~~~~I~~~l~~~ 175 (185)
T 3trf_A 148 AMADLVYPTDDLNPRQLATQILVDIKQT 175 (185)
T ss_dssp HHCSEEEECTTCCHHHHHHHHHHHSCC-
T ss_pred hcCCEEEECCCCCHHHHHHHHHHHHHHH
Confidence 1368999999889999999999988654
No 26
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.62 E-value=5.2e-15 Score=119.13 Aligned_cols=146 Identities=8% Similarity=0.017 Sum_probs=90.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEcCC
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIALCSFV 102 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI~d~~ 102 (272)
++|+|+|+|||||||+|+.|++.+ ++.++|.|.+..... . ....+ .... .+..|..|++|..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l-----~~~~i~~d~~~~~~~-----~---~~~~~----~~~~-~l~~~~~vi~dr~ 63 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL-----KYPIIKGSSFELAKS-----G---NEKLF----EHFN-KLADEDNVIIDRF 63 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH-----CCCEEECCCHHHHTT-----C---HHHHH----HHHH-HHTTCCSEEEESC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-----CCeeecCcccccchh-----H---HHHHH----HHHH-HHHhCCCeEEeee
Confidence 489999999999999999999999 566788887654221 0 01111 1112 2345667776621
Q ss_pred C---------------CcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCC---
Q psy17388 103 S---------------PTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEA--- 164 (272)
Q Consensus 103 ~---------------~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~--- 164 (272)
. ....++..+.... ..+..+|||++|++++.+|+.+|... .. ....+..+...|+.
T Consensus 64 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~i~l~~~~e~~~~R~~~r~r~--~~-~~~~~~~~~~~~~~~~~ 137 (173)
T 3kb2_A 64 VYSNLVYAKKFKDYSILTERQLRFIEDKI---KAKAKVVYLHADPSVIKKRLRVRGDE--YI-EGKDIDSILELYREVMS 137 (173)
T ss_dssp HHHHHHHTTTBTTCCCCCHHHHHHHHHHH---TTTEEEEEEECCHHHHHHHHHHHSCS--CC-CHHHHHHHHHHHHHHHH
T ss_pred ecchHHHHHHHHHhhHhhHHHHHHHhccC---CCCCEEEEEeCCHHHHHHHHHhcCCc--ch-hhhHHHHHHHHHHHHHh
Confidence 1 1122333333222 23568999999999999999664110 00 00011122222321
Q ss_pred -CCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388 165 -PKNPDLILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 165 -~~~~~~~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
...++++||+++.++++++++|.+.++.
T Consensus 138 ~~~~~~~~id~~~~~~~ev~~~I~~~~~~ 166 (173)
T 3kb2_A 138 NAGLHTYSWDTGQWSSDEIAKDIIFLVEL 166 (173)
T ss_dssp TCSSCEEEEETTTSCHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCHHHHHHHHHHHHhC
Confidence 2246789999878999999999999886
No 27
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.61 E-value=8.8e-15 Score=120.03 Aligned_cols=165 Identities=15% Similarity=0.143 Sum_probs=93.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc-c-c--------------CCCCHHHHHHHH-HHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN-A-N--------------LAFSEEDRNENV-RRA 83 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~-~-~--------------~~~~~~~~~~~~-~~i 83 (272)
+|.+|+|+|+|||||||+|+.|++.+ +..++|.|.+..... . + ...........+ ..+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~-----~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~ 76 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY-----GYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREM 76 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH-----CCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh-----CCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHH
Confidence 57899999999999999999999998 566788776532211 0 0 001111111111 111
Q ss_pred HHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcc--------cccc
Q psy17388 84 AECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGK--------IKSF 155 (272)
Q Consensus 84 ~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~--------~~~~ 155 (272)
.... .....+..||+|+.......+..+...+.....+..+|||++|++++.+|+.+|.....|... +..+
T Consensus 77 ~~~~-~~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~ 155 (196)
T 1tev_A 77 DQTM-AANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTY 155 (196)
T ss_dssp HHHH-HHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHH
T ss_pred Hhhh-ccccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHH
Confidence 1111 112346678888655444444444443332222457899999999999999766321111110 0000
Q ss_pred ccccc----cCCCCCCCcE-EEeCCCCCHHHHHHHHHHHHHhCC
Q psy17388 156 TGVSQ----PYEAPKNPDL-ILETVNVPVEKCANSVLDMIAAKG 194 (272)
Q Consensus 156 ~~~~~----~ye~~~~~~~-~Idt~~~~~ee~~~~I~~~L~~~~ 194 (272)
..... .|.. ..++ +||++ .++++++++|.+.+.+.|
T Consensus 156 ~~~~~~~~~~y~~--~~~~~~id~~-~~~~~v~~~i~~~l~~~g 196 (196)
T 1tev_A 156 LQSTKPIIDLYEE--MGKVKKIDAS-KSVDEVFDEVVQIFDKEG 196 (196)
T ss_dssp HHHHHHHHHHHHH--TTCEEEEETT-SCHHHHHHHHHHHHHHCC
T ss_pred HHhHHHHHHHHHh--cCCEEEEECC-CCHHHHHHHHHHHHHhcC
Confidence 00111 1322 2344 88886 899999999999987643
No 28
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.58 E-value=1.7e-14 Score=118.14 Aligned_cols=166 Identities=17% Similarity=0.103 Sum_probs=93.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc-ccCCCCHHH-----------HHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN-ANLAFSEED-----------RNENVRRAAECA 87 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~-~~~~~~~~~-----------~~~~~~~i~~~~ 87 (272)
..+.+|+|+|+|||||||+|+.|++.+ ++.++|.|.+..... .+......- .......+..
T Consensus 4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l-----~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~-- 76 (194)
T 1qf9_A 4 SKPNVVFVLGGPGSGKGTQCANIVRDF-----GWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKN-- 76 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHH-----CCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHH--
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHHh-----CCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHH--
Confidence 356799999999999999999999999 567788765533211 111110000 0001111111
Q ss_pred HHHHh-CCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcc-ccccc-cccccCC-
Q psy17388 88 KMFAE-CGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGK-IKSFT-GVSQPYE- 163 (272)
Q Consensus 88 ~~~~~-~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~-~~~~~-~~~~~ye- 163 (272)
.+.. .|..||+|+.......+..+...+.....+.++|||++|++++.+|+.+|.....+... ...+. .+...++
T Consensus 77 -~i~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~ri~~~~~~ 155 (194)
T 1qf9_A 77 -AIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQ 155 (194)
T ss_dssp -HHHTSTTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHT
T ss_pred -HHHhcCCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHh
Confidence 1111 45677777644333444445444442223457899999999999999765321111100 00110 0111110
Q ss_pred ------CCCCCc--EEEeCCCCCHHHHHHHHHHHHHhCC
Q psy17388 164 ------APKNPD--LILETVNVPVEKCANSVLDMIAAKG 194 (272)
Q Consensus 164 ------~~~~~~--~~Idt~~~~~ee~~~~I~~~L~~~~ 194 (272)
....++ ++||++ .++++++++|.+.+.+.+
T Consensus 156 ~~~~~~~~~~~~~~~~id~~-~~~~~~~~~i~~~l~~~~ 193 (194)
T 1qf9_A 156 TKLVIDHYNKFDKVKIIPAN-RDVNEVYNDVENLFKSMG 193 (194)
T ss_dssp HHHHHHHHHHTTCEEEEECS-SCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCEEEEECC-CCHHHHHHHHHHHHHHcc
Confidence 011234 678876 799999999999998765
No 29
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.58 E-value=3.7e-15 Score=119.88 Aligned_cols=158 Identities=13% Similarity=0.092 Sum_probs=90.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc-cccccccc-CCCC-HHH-HHHHHH-----HHHHHHHHHH--
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN-LRNGINAN-LAFS-EED-RNENVR-----RAAECAKMFA-- 91 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~-i~~~l~~~-~~~~-~~~-~~~~~~-----~i~~~~~~~~-- 91 (272)
++|+|+|+|||||||+|+.| +.+ | ..+++.|. ++...... .... ... ...... .+.......+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~---g--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 75 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER---G--AKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLCVEELGT 75 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT---T--CEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHHHHHHHCS
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC---C--CcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Confidence 58999999999999999999 776 4 44566443 33322111 0000 000 001011 1122333334
Q ss_pred hCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcccccccc-cc--ccCC---CC
Q psy17388 92 ECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTG-VS--QPYE---AP 165 (272)
Q Consensus 92 ~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~-~~--~~ye---~~ 165 (272)
..+..||+++. .....++.+..... .++++|||++|++++.+|+..|.... .......+.. +. ..+. ..
T Consensus 76 ~~~~~vi~dg~-~~~~~~~~l~~~~~---~~~~~i~l~~~~~~~~~R~~~R~~~~-~~~~~~~~~~r~~~~~~~~~~~~~ 150 (179)
T 3lw7_A 76 SNHDLVVFDGV-RSLAEVEEFKRLLG---DSVYIVAVHSPPKIRYKRMIERLRSD-DSKEISELIRRDREELKLGIGEVI 150 (179)
T ss_dssp CCCSCEEEECC-CCHHHHHHHHHHHC---SCEEEEEEECCHHHHHHHHHTCC-----CCCHHHHHHHHHHHHHHTHHHHH
T ss_pred cCCCeEEEeCC-CCHHHHHHHHHHhC---CCcEEEEEECCHHHHHHHHHhccCCC-CcchHHHHHHHHHhhhccChHhHH
Confidence 55667777766 44455666655543 47789999999999999997653210 0011111111 10 0110 01
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388 166 KNPDLILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 166 ~~~~~~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
..++++||+++ +++++.++|.+.+.+
T Consensus 151 ~~ad~vId~~~-~~~~~~~~i~~~l~~ 176 (179)
T 3lw7_A 151 AMADYIITNDS-NYEEFKRRCEEVTDR 176 (179)
T ss_dssp HTCSEEEECCS-CHHHHHHHHHHHHHH
T ss_pred HhCCEEEECCC-CHHHHHHHHHHHHHH
Confidence 35689999876 999999999988864
No 30
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=99.57 E-value=1.5e-14 Score=122.56 Aligned_cols=163 Identities=17% Similarity=0.198 Sum_probs=98.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccc-----cccc---------CC-CC-------------
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNG-----INAN---------LA-FS------------- 72 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~-----l~~~---------~~-~~------------- 72 (272)
+..+|.|+|.+||||||+|+.|+++| ++.++|+|.++.. +... .. |.
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~l-----g~~~~d~~~~~~~a~~~g~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~ 87 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEEL-----GIHFYDDDILKLASEKSAVGEQFFRLADEKAGNNLLYRLGGGRKIDLHS 87 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHH-----TCEEECHHHHHHHHHCC--------------------------------
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHc-----CCcEEcHHHHHHHHHHcCCCHHHHHHHHhhccccHHHHHhccccccccc
Confidence 35799999999999999999999999 5667887765431 1100 00 00
Q ss_pred ------H-HHHHHHHHHHHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhh-
Q psy17388 73 ------E-EDRNENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHY- 144 (272)
Q Consensus 73 ------~-~~~~~~~~~i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~- 144 (272)
. ......+....++++.+.+.+..||...+..+ +....+.. ...+.|||++|++++.+|+.++..
T Consensus 88 ~~~~~~~~~~~~~~f~~~~~~i~~la~~~~~Vi~Grggg~------vl~~~~~~-~~~~~VfL~A~~e~r~~Ri~~~~~~ 160 (223)
T 3hdt_A 88 KPSPNDKLTSPENLFKFQSEVMRELAESEPCIFVGRAAGY------VLDQDEDI-ERLIRIFVYTDKVKKVQRVMEVDCI 160 (223)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHSCEEEESTTHHH------HHHHCTTC-CEEEEEEEECCHHHHHHHHHHHHTC
T ss_pred ccccccccccHHHHHHHHHHHHHHHHhCCCEEEEeCCcch------hcccccCC-CCeEEEEEECCHHHHHHHHHHhcCC
Confidence 0 00011122233456667766777777554331 11001221 246899999999999999865410
Q ss_pred --hhhhhcccccccccc---------ccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHhCCCC
Q psy17388 145 --KKAREGKIKSFTGVS---------QPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLI 196 (272)
Q Consensus 145 --~~~r~~~~~~~~~~~---------~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~~~~ 196 (272)
...+ ..+......+ ..+..|..++++|||+.++++++++.|++.+..++++
T Consensus 161 ~~~~a~-~~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~IdT~~l~~eevv~~I~~~i~~~~~~ 222 (223)
T 3hdt_A 161 DEERAK-RRIKKIEKERKEYYKYFTGSEWHSMKNYDLPINTTKLTLEETAELIKAYIRLKGFM 222 (223)
T ss_dssp CHHHHH-HHHHHHHHHHHHHHHHHHSSCTTCGGGCSEEEECTTCCHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHH-HHHHHHHHHHHHHHHHHcCCCCCCcccCeEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 0000 0011100001 1233455678999999999999999999999998775
No 31
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.57 E-value=2.8e-14 Score=123.05 Aligned_cols=122 Identities=17% Similarity=0.197 Sum_probs=86.4
Q ss_pred cCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc------ccCCCCHHHHHH--HHHHHHHHHHH
Q psy17388 18 EGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN------ANLAFSEEDRNE--NVRRAAECAKM 89 (272)
Q Consensus 18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~------~~~~~~~~~~~~--~~~~i~~~~~~ 89 (272)
...+|.+|+|+|+|||||||+|+.|++.+ +.++.++|+|.++..+. ...+.......+ ..+.+..++..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l---~~~~~~~~~D~~r~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 104 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEF---QGNIVIIDGDSFRSQHPHYLELQQEYGKDSVEYTKDFAGKMVESLVTK 104 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHT---TTCCEEECGGGGGTTSTTHHHHHTTCSSTTHHHHHHHHHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhc---CCCcEEEecHHHHHhchhHHHHHHHcCchHHHHhhHHHHHHHHHHHHH
Confidence 34678999999999999999999999998 44578899999977542 223333222212 11223455566
Q ss_pred HHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388 90 FAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG 142 (272)
Q Consensus 90 ~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r 142 (272)
+++.|..+|++........+..+...++..|..+..+|+++|++++.+|+..|
T Consensus 105 ~~~~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R 157 (253)
T 2p5t_B 105 LSSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLIR 157 (253)
T ss_dssp HHHTTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHH
T ss_pred HHhcCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHH
Confidence 67777666666554333556667777788888888899999999999998765
No 32
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.56 E-value=5.1e-15 Score=119.04 Aligned_cols=156 Identities=16% Similarity=0.200 Sum_probs=90.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCC---HHHHHHHHHHH-HHHHHHHHhCCCeEE
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFS---EEDRNENVRRA-AECAKMFAECGFIAL 98 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~---~~~~~~~~~~i-~~~~~~~~~~g~~VI 98 (272)
+.|+|+|+|||||||+|+.|++.+ ++.++|.|.+...... .... .......++.+ ..+...+...+.+||
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~l-----~~~~i~~d~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~Vi 74 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRSL-----NIPFYDVDEEVQKREG-LSIPQIFEKKGEAYFRKLEFEVLKDLSEKENVVI 74 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHHH-----TCCEEEHHHHHHHHHT-SCHHHHHHHSCHHHHHHHHHHHHHHHTTSSSEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh-----CCCEEECcHHHHHHcC-CCHHHHHHHhChHHHHHHHHHHHHHHhccCCeEE
Confidence 479999999999999999999999 4556787776543211 0000 00011222222 222333444666777
Q ss_pred EcCCC--CcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCC---C-CCCCcEEE
Q psy17388 99 CSFVS--PTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYE---A-PKNPDLIL 172 (272)
Q Consensus 99 ~d~~~--~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye---~-~~~~~~~I 172 (272)
+++.. .....++. +.. ...+|||++|++++.+|+.+|. .|.........+...|. + ...++++|
T Consensus 75 ~~g~~~~~~~~~~~~----l~~---~~~~i~l~~~~e~~~~R~~~r~---~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i 144 (168)
T 2pt5_A 75 STGGGLGANEEALNF----MKS---RGTTVFIDIPFEVFLERCKDSK---ERPLLKRPLDEIKNLFEERRKIYSKADIKV 144 (168)
T ss_dssp ECCHHHHTCHHHHHH----HHT---TSEEEEEECCHHHHHHHCBCTT---CCBGGGSCGGGTHHHHHHHHHHHTTSSEEE
T ss_pred ECCCCEeCCHHHHHH----HHc---CCEEEEEECCHHHHHHHHhCCC---CCCCCcchHHHHHHHHHHHHHHHHhCCEEE
Confidence 64311 11222332 222 2378999999999999997542 11100001111222222 0 11278888
Q ss_pred eCCCCCHHHHHHHHHHHHHhCCC
Q psy17388 173 ETVNVPVEKCANSVLDMIAAKGL 195 (272)
Q Consensus 173 dt~~~~~ee~~~~I~~~L~~~~~ 195 (272)
+++.++++++++|.+.+.+.+.
T Consensus 145 -~~~~~~~~~~~~i~~~l~~~~~ 166 (168)
T 2pt5_A 145 -KGEKPPEEVVKEILLSLEGNAL 166 (168)
T ss_dssp -ECSSCHHHHHHHHHHHHHTSCC
T ss_pred -CCCCCHHHHHHHHHHHHHhccC
Confidence 7778999999999999987653
No 33
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=99.56 E-value=6.9e-14 Score=117.72 Aligned_cols=172 Identities=15% Similarity=0.192 Sum_probs=102.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc-------ccccccccc--CCCCHHHHH-----HHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD-------NLRNGINAN--LAFSEEDRN-----ENVRRAAE 85 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D-------~i~~~l~~~--~~~~~~~~~-----~~~~~i~~ 85 (272)
++|++|+|.|++||||||+++.|++.|...|+++.....- .+++.+... ..+++.... ..++.+.+
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~~~~~~ 83 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLAG 83 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999998888887655321 122212111 123322111 11122334
Q ss_pred HHHHHHhCCCeEEEcCCC------------CcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhh-hhhhhccc
Q psy17388 86 CAKMFAECGFIALCSFVS------------PTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHY-KKAREGKI 152 (272)
Q Consensus 86 ~~~~~~~~g~~VI~d~~~------------~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~-~~~r~~~~ 152 (272)
.++..++.|.+||+|... ....+...+...+.....|.++|||++|++++.+|+.+|.. .+......
T Consensus 84 ~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~~dr~E~~~~ 163 (213)
T 4edh_A 84 VIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRLDRFEQEDR 163 (213)
T ss_dssp THHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSSCCTTTTSCH
T ss_pred HHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcCcccccHH
Confidence 456667889999998421 01123333333333345688999999999999999976521 00000001
Q ss_pred cccccccccCCCC----CCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388 153 KSFTGVSQPYEAP----KNPDLILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 153 ~~~~~~~~~ye~~----~~~~~~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
..+..++..|... ....++||+ +.+++++.++|.+.+.+
T Consensus 164 ~~~~rv~~~y~~l~~~~~~~~~vIDa-~~s~eeV~~~I~~~l~~ 206 (213)
T 4edh_A 164 RFFEAVRQTYLQRAAQAPERYQVLDA-GLPLAEVQAGLDRLLPN 206 (213)
T ss_dssp HHHHHHHHHHHHHHHHCTTTEEEEET-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCcEEEEeC-CCCHHHHHHHHHHHHHH
Confidence 1122233444321 123477886 57999999999988865
No 34
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.56 E-value=2.4e-15 Score=122.20 Aligned_cols=155 Identities=18% Similarity=0.280 Sum_probs=90.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc-cCC-CCHHHHHHHHHHH-HHHHHHHHhCCCeEEEc
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA-NLA-FSEEDRNENVRRA-AECAKMFAECGFIALCS 100 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~-~~~-~~~~~~~~~~~~i-~~~~~~~~~~g~~VI~d 100 (272)
+|+|+|+|||||||+|+.|++.+ ++.++|.|.+...... ... +........++.+ ..+...+......||..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l-----~~~~~d~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~~ 80 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL-----DLVFLDSDFLIEQKFNQKVSEIFEQKRENFFREQEQKMADFFSSCEKACIAT 80 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH-----TCEEEEHHHHHHHHHTSCHHHHHHHHCHHHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc-----CCCEEcccHHHHHHcCCCHHHHHHHcCHHHHHHHHHHHHHHHHccCCEEEEC
Confidence 69999999999999999999999 5778999887543211 000 0001112223322 23344455455556653
Q ss_pred CCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCC--C---CCCcEEEeCC
Q psy17388 101 FVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEA--P---KNPDLILETV 175 (272)
Q Consensus 101 ~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~--~---~~~~~~Idt~ 175 (272)
+.... ..+. ++..+ .+|||++|++++.+|+.+|.+. .|. .......+...|.. | ..++++|||+
T Consensus 81 g~~~~-~~~~-----l~~~~---~~i~l~~~~e~~~~R~~~r~~~-~r~-~~~~~~~i~~~~~~r~~~y~~~~~~~Idt~ 149 (175)
T 1via_A 81 GGGFV-NVSN-----LEKAG---FCIYLKADFEYLKKRLDKDEIS-KRP-LFYDEIKAKKLYNERLSKYEQKANFILNIE 149 (175)
T ss_dssp CTTGG-GSTT-----GGGGC---EEEEEECCHHHHTTCCCGGGTT-TSC-TTCCHHHHHHHHHHHHHHHHHHCSEEEECT
T ss_pred CCCEe-hhhH-----HhcCC---EEEEEeCCHHHHHHHHhcccCC-CCC-CcccHHHHHHHHHHHHHHHHhcCCEEEECC
Confidence 32111 1111 23332 7899999999999999765311 111 11111112222221 1 2367999999
Q ss_pred CCCHHHHHHHHHHHHHhCC
Q psy17388 176 NVPVEKCANSVLDMIAAKG 194 (272)
Q Consensus 176 ~~~~ee~~~~I~~~L~~~~ 194 (272)
+.+++++++.|++.+...|
T Consensus 150 ~~~~eev~~~I~~~l~~~~ 168 (175)
T 1via_A 150 NKNIDELLSEIKKVIKEGG 168 (175)
T ss_dssp TCCHHHHHHHHHHHHC---
T ss_pred CCCHHHHHHHHHHHHHhcC
Confidence 8999999999999987654
No 35
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.55 E-value=1e-14 Score=119.41 Aligned_cols=163 Identities=14% Similarity=0.082 Sum_probs=89.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc------cccccc----CCCCHHHHHHHHHHHHHHHHHHH-
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR------NGINAN----LAFSEEDRNENVRRAAECAKMFA- 91 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~------~~l~~~----~~~~~~~~~~~~~~i~~~~~~~~- 91 (272)
++|+|+|+|||||||+|+.|++.++..|+++.+++.|.+. ..+... ..+....+......+...+...+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 81 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQIDAAKGIAEEAR 81 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccchhhhhcCCHHHHHHHHHHHHHHHHHHhh
Confidence 5899999999999999999999997777778888855432 111111 01222222233322222233444
Q ss_pred -hCCCeEEEcCCCCcHH--------HHHHHHHHHHhCCCceEEEEEeCCHHHHHHh-hhh--hhh-hhhhhccccccccc
Q psy17388 92 -ECGFIALCSFVSPTAA--------ARDRAREIHRNANLEFFEVFVNTPVEICEQR-DVK--GHY-KKAREGKIKSFTGV 158 (272)
Q Consensus 92 -~~g~~VI~d~~~~~~~--------~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~R-l~~--r~~-~~~r~~~~~~~~~~ 158 (272)
..|..||+|+...... .++.++.. .+..+|||++|++++.+| +.+ |.+ .......+.....+
T Consensus 82 ~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~vi~l~~~~~~~~~rr~~~~~R~~~~~~~~~~~~~~~~~ 156 (194)
T 1nks_A 82 AGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEI-----NPSVIFLLEADPKIILSRQKRDTTRNRNDYSDESVILETINF 156 (194)
T ss_dssp HTCSSEEEEEECSEEEETTEEEESSCHHHHHHH-----CCSEEEEEECCHHHHHHHHHHCTTTCCCCCCSHHHHHHHHHH
T ss_pred ccCCCEEEECCchhhccccccccCCCHHHHHhc-----CCCEEEEEeCCHHHHHHHHHhhcccCCCCccCHHHHHHHHHH
Confidence 6788888886421100 02233322 145789999999998866 544 321 00000000001112
Q ss_pred cccCCCC-----CCCcEEEeCCCCCHHHHHHHHHHHH
Q psy17388 159 SQPYEAP-----KNPDLILETVNVPVEKCANSVLDMI 190 (272)
Q Consensus 159 ~~~ye~~-----~~~~~~Idt~~~~~ee~~~~I~~~L 190 (272)
...|... ....++|++++.++++++++|.+.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~I~d~~~~~e~v~~~I~~~l 193 (194)
T 1nks_A 157 ARYAATASAVLAGSTVKVIVNVEGDPSIAANEIIRSM 193 (194)
T ss_dssp HHHHHHHHHHHHTCEEEEEECCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHh
Confidence 2222211 1222666244679999999998875
No 36
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=99.55 E-value=2.1e-14 Score=119.83 Aligned_cols=157 Identities=11% Similarity=0.138 Sum_probs=91.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc-----cccccCCCCHHH------H-------------
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN-----GINANLAFSEED------R------------- 76 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~-----~l~~~~~~~~~~------~------------- 76 (272)
+..+|.|.|++||||||+|+.|+++| ++.++|++.++. ++..+ .|.... +
T Consensus 5 ~~~iI~i~g~~GsGk~ti~~~la~~l-----g~~~~D~~~~~~~a~~~g~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~ 78 (201)
T 3fdi_A 5 KQIIIAIGREFGSGGHLVAKKLAEHY-----NIPLYSKELLDEVAKDGRYSKE-VLERFDEKPMNFAFIPVPAGGTTISL 78 (201)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHT-----TCCEECHHHHHHTTCC---------------------------------
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHh-----CcCEECHHHHHHHHHhcCCCHH-HHHHHhhhchhHHHHHhccccccccc
Confidence 45699999999999999999999999 455678554432 11111 011000 0
Q ss_pred -HHHHHHHHHHHHHHH--hCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhh-h-hhhhcc
Q psy17388 77 -NENVRRAAECAKMFA--ECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHY-K-KAREGK 151 (272)
Q Consensus 77 -~~~~~~i~~~~~~~~--~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~-~-~~r~~~ 151 (272)
...+....++++.+. +.|.+|+...... . +++.. -..+.|||++|++++.+|+.++.. . ..-...
T Consensus 79 ~~~~~~~~~~~i~~la~~~~~~~Vi~Gr~g~------~---vl~~~-~~~~~V~L~A~~e~r~~R~~~~~~~~~~~~~~~ 148 (201)
T 3fdi_A 79 EQDIAIRQFNFIRKKANEEKESFVIVGRCAE------E---ILSDN-PNMISAFILGDKDTKTKRVMEREGVDEKTALNM 148 (201)
T ss_dssp -CHHHHHHHHHHHHHHHTSCCCEEEESTTHH------H---HTTTC-TTEEEEEEEECHHHHHHHHHHHHTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhcCCCEEEEECCcc------h---hcCCC-CCeEEEEEECCHHHHHHHHHHHhCCCHHHHHHH
Confidence 011123345666677 6776777654322 1 12221 135899999999999999865410 0 000000
Q ss_pred cccccccc---------ccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388 152 IKSFTGVS---------QPYEAPKNPDLILETVNVPVEKCANSVLDMIAAK 193 (272)
Q Consensus 152 ~~~~~~~~---------~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~ 193 (272)
+......+ ..+..+..++++|||+.++++++++.|++.+..+
T Consensus 149 i~~~d~~R~~~y~~~~~~~~~~~~~~dl~Idt~~l~~eevv~~I~~~i~~~ 199 (201)
T 3fdi_A 149 MKKMDKMRKVYHNFYCESKWGDSRTYDICIKIGKVDVDTATDMIIKYIDSR 199 (201)
T ss_dssp HHHHHHHHHHHHHHHCSSCTTBGGGCSEEEEESSSCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcccCCEEEECCCCCHHHHHHHHHHHHHHh
Confidence 11000001 1112234578999999999999999999998764
No 37
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.55 E-value=2.9e-14 Score=118.81 Aligned_cols=170 Identities=14% Similarity=0.176 Sum_probs=94.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc--------ccccccccCCCCHHHHHHHHH--HH--HHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN--------LRNGINANLAFSEEDRNENVR--RA--AECA 87 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~--------i~~~l~~~~~~~~~~~~~~~~--~i--~~~~ 87 (272)
++|++|+|+|+|||||||+|+.|++.++..++.+..+.... ++..+..+..++.......+. +. .+.+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 87 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLYFPNRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHMNEI 87 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999976666664333211 111111112233211111111 00 0123
Q ss_pred HHHHhCCCeEEEcCCCCc----HHH-----HHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccc
Q psy17388 88 KMFAECGFIALCSFVSPT----AAA-----RDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGV 158 (272)
Q Consensus 88 ~~~~~~g~~VI~d~~~~~----~~~-----r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~ 158 (272)
...+..|..||+|..... ... .+.+..+......+..+|||++|++++.+|+.+|. .+.........+
T Consensus 88 ~~~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~---~r~~~~~~~~~~ 164 (212)
T 2wwf_A 88 KSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGE---EIYEKVETQKKI 164 (212)
T ss_dssp HHHHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTTS---STTCSHHHHHHH
T ss_pred HHHHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccCc---ccccHHHHHHHH
Confidence 344456778888754311 001 11111111111246688999999999999986431 111000011123
Q ss_pred cccCCCC--CCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388 159 SQPYEAP--KNPDLILETVNVPVEKCANSVLDMIAAK 193 (272)
Q Consensus 159 ~~~ye~~--~~~~~~Idt~~~~~ee~~~~I~~~L~~~ 193 (272)
...|+.+ ..++++||++ .++++++++|.+.+...
T Consensus 165 ~~~~~~~~~~~~~~~Id~~-~~~~~~~~~i~~~l~~~ 200 (212)
T 2wwf_A 165 YETYKHFAHEDYWINIDAT-RKIEDIHNDIVKEVTKI 200 (212)
T ss_dssp HHHGGGGTTCTTEEEEECS-SCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhccCCEEEEECC-CCHHHHHHHHHHHHHHh
Confidence 3344332 3456889986 79999999999998754
No 38
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.54 E-value=2.3e-15 Score=121.67 Aligned_cols=161 Identities=16% Similarity=0.188 Sum_probs=81.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc-cCCCC-HHHHHHHHHHH-HHHHHHHHhCCCeEE
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA-NLAFS-EEDRNENVRRA-AECAKMFAECGFIAL 98 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~-~~~~~-~~~~~~~~~~i-~~~~~~~~~~g~~VI 98 (272)
+.+|+|+|+|||||||+++.|+..+ +..++|+|.+...... ..+.- .......++.. ..+...+......++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l-----~~~~id~d~~~~~~~~~~i~~i~~~~g~~~~~~~~~~~l~~l~~~~~~v~ 78 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQL-----NMEFYDSDQEIEKRTGADVGWVFDLEGEEGFRDREEKVINELTEKQGIVL 78 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHT-----TCEEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTSSSEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh-----CCCEEeccHHHHHHhCcCHHHHHHHHhHHHHHHHHHHHHHHHHhCCCeEE
Confidence 5689999999999999999999998 5678888876442211 11100 00111122211 122233333444555
Q ss_pred EcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCC--C---CCCcEEEe
Q psy17388 99 CSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEA--P---KNPDLILE 173 (272)
Q Consensus 99 ~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~--~---~~~~~~Id 173 (272)
....... .....+..++..+ +++|++++++++.+|+.+|...............+...+.. | ..++++||
T Consensus 79 ~~~~~~~--~~~~~~~~l~~~~---~~i~l~~~~~~l~~R~~~r~~r~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~id 153 (173)
T 1kag_A 79 ATGGGSV--KSRETRNRLSARG---VVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLYEEIADVTIR 153 (173)
T ss_dssp ECCTTGG--GSHHHHHHHHHHS---EEEECCCCHHHHHSCC------CCSSSSCCCHHHHHHHHHHHHHHHHHHCSEEC-
T ss_pred ECCCeEE--ecHHHHHHHHhCC---EEEEEeCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhCCEEEE
Confidence 4321111 1122223333334 67999999999999997652111000000001111111111 1 23689999
Q ss_pred CCCCCHHHHHHHHHHHHHh
Q psy17388 174 TVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 174 t~~~~~ee~~~~I~~~L~~ 192 (272)
|++.++++++++|.+.+..
T Consensus 154 ~~~~~~~~~~~~i~~~l~~ 172 (173)
T 1kag_A 154 TDDQSAKVVANQIIHMLES 172 (173)
T ss_dssp ----CHHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9888999999999988754
No 39
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.54 E-value=2.3e-14 Score=132.25 Aligned_cols=104 Identities=13% Similarity=0.126 Sum_probs=87.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEE
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIAL 98 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI 98 (272)
..+|.+|+|+|+|||||||+|+.|++.+ ++.+++.|.++. ++.+...+...+..|..||
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~----------------~~~~~~~~~~~l~~g~~vI 313 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA-----GYVHVNRDTLGS----------------WQRCVSSCQAALRQGKRVV 313 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG-----TCEECCGGGSCS----------------HHHHHHHHHHHHHTTCCEE
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc-----CcEEEccchHHH----------------HHHHHHHHHHHHhcCCcEE
Confidence 4568899999999999999999999988 678899988732 2233444555667888899
Q ss_pred EcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh
Q psy17388 99 CSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH 143 (272)
Q Consensus 99 ~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~ 143 (272)
+|..+.....|..+.++++..|.++.+|||++|.+++.+|+.+|.
T Consensus 314 iD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~ 358 (416)
T 3zvl_A 314 IDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFRE 358 (416)
T ss_dssp EESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhc
Confidence 998888888899999998888999999999999999999997764
No 40
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.53 E-value=6.6e-15 Score=118.85 Aligned_cols=153 Identities=12% Similarity=0.086 Sum_probs=88.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCC---HHHHHHHHHHHH-HHHHHHHhCCCeEE
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFS---EEDRNENVRRAA-ECAKMFAECGFIAL 98 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~---~~~~~~~~~~i~-~~~~~~~~~g~~VI 98 (272)
++|+|+|+|||||||+|+.|++.+ ++.++|.|.+..... +.... .......++.+. .+...+. .+..||
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l-----g~~~id~d~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~vi 75 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL-----GYEFVDTDIFMQHTS-GMTVADVVAAEGWPGFRRRESEALQAVA-TPNRVV 75 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH-----TCEEEEHHHHHHHHH-CSCHHHHHHHHHHHHHHHHHHHHHHHHC-CSSEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh-----CCcEEcccHHHHHHh-CCCHHHHHHHcCHHHHHHHHHHHHHHhh-cCCeEE
Confidence 479999999999999999999999 567788887754331 11110 112223333332 2233333 455666
Q ss_pred EcCCCC--cHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhh--hhhhhhhhhcccc---ccccccccCCC--C--CC
Q psy17388 99 CSFVSP--TAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDV--KGHYKKAREGKIK---SFTGVSQPYEA--P--KN 167 (272)
Q Consensus 99 ~d~~~~--~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~--~r~~~~~r~~~~~---~~~~~~~~ye~--~--~~ 167 (272)
.++... ....++.+. . ..++|||++|++++.+|+. +|.. .+ .... ....+...|.. + ..
T Consensus 76 ~~g~~~~~~~~~~~~l~----~---~~~~i~l~~~~e~~~~R~~~~~r~~--~r-~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (173)
T 1e6c_A 76 ATGGGMVLLEQNRQFMR----A---HGTVVYLFAPAEELALRLQASLQAH--QR-PTLTGRPIAEEMEAVLREREALYQD 145 (173)
T ss_dssp ECCTTGGGSHHHHHHHH----H---HSEEEEEECCHHHHHHHHHHHHCSC--CC-CCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCCcEEeCHHHHHHHH----c---CCeEEEEECCHHHHHHHHhhccCCC--CC-CcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 543221 223333332 2 2378999999999999996 4410 00 0000 00111111110 0 12
Q ss_pred CcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388 168 PDLILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 168 ~~~~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
++++|||++.++++++++|.+.+..
T Consensus 146 ~~~~Id~~~~~~~~~~~~i~~~l~~ 170 (173)
T 1e6c_A 146 VAHYVVDATQPPAAIVCELMQTMRL 170 (173)
T ss_dssp HCSEEEETTSCHHHHHHHHHHHTTC
T ss_pred CcEEEECCCCCHHHHHHHHHHHhcc
Confidence 5799999878999999999988753
No 41
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.53 E-value=1e-13 Score=113.68 Aligned_cols=164 Identities=13% Similarity=0.145 Sum_probs=92.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc-------cccccccccCCCCHHHH-----HHHHHHHHHHHHHH
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD-------NLRNGINANLAFSEEDR-----NENVRRAAECAKMF 90 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D-------~i~~~l~~~~~~~~~~~-----~~~~~~i~~~~~~~ 90 (272)
++|+|+|+|||||||+|+.|++.+...|+++...|.. .++..+. +-.+..... ...+..+...+...
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~l~~~i~~~ 79 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPGGTKVGEVLREILL-TEELDERTELLLFEASRSKLIEEKIIPD 79 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHHHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCchHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999997777776554421 0111111 111222110 01112222334455
Q ss_pred HhCCCeEEEcCC---------CC---cHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccc
Q psy17388 91 AECGFIALCSFV---------SP---TAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGV 158 (272)
Q Consensus 91 ~~~g~~VI~d~~---------~~---~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~ 158 (272)
+..|..||++.. .+ .......+..+......+..+|||+||++++.+|+.+|. +......+..+
T Consensus 80 l~~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~----~~~~~~~~~~~ 155 (195)
T 2pbr_A 80 LKRDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKN----RFENKEFLEKV 155 (195)
T ss_dssp HHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTT----CCCCHHHHHHH
T ss_pred HhCCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhccC----ccchHHHHHHH
Confidence 678888888731 11 111122222222322246689999999999999986431 11000111112
Q ss_pred cccCCCCC---CCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388 159 SQPYEAPK---NPDLILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 159 ~~~ye~~~---~~~~~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
...|+.+. .+.++||+ +.+++++.++|.+.+.+
T Consensus 156 ~~~~~~~~~~~~~~~~Id~-~~~~~~~~~~i~~~l~~ 191 (195)
T 2pbr_A 156 RKGFLELAKEEENVVVIDA-SGEEEEVFKEILRALSG 191 (195)
T ss_dssp HHHHHHHHHHSTTEEEEET-TSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhCCCEEEEEC-CCCHHHHHHHHHHHHHH
Confidence 23343321 34588888 57999999999998864
No 42
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.53 E-value=8.1e-14 Score=122.61 Aligned_cols=116 Identities=16% Similarity=0.134 Sum_probs=86.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccccc-C----CCCHHHHHHHH-HHHHHHHHHHH---h
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINAN-L----AFSEEDRNENV-RRAAECAKMFA---E 92 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~-~----~~~~~~~~~~~-~~i~~~~~~~~---~ 92 (272)
|.+|+|+|+|||||||+|+.|++.+. ++.+++.|.++..+... . .+... ..... +.+...+...+ +
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~----~~~~i~~D~~r~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~ 76 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNP----GFYNINRDDYRQSIMAHEERDEYKYTKK-KEGIVTGMQFDTAKSILYGGD 76 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHST----TEEEECHHHHHHHHTTSCCCC---CCHH-HHHHHHHHHHHHHHHHTTSCT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCC----CcEEecccHHHHHhccCCcccccccchh-hhhHHHHHHHHHHHHHHhhcc
Confidence 57899999999999999999999631 57889999877654321 1 24322 22222 22334555666 7
Q ss_pred CCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388 93 CGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG 142 (272)
Q Consensus 93 ~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r 142 (272)
.|..||+|..+.....++.+.++++..|.++.+|||++|.+++.+|+.+|
T Consensus 77 ~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R 126 (301)
T 1ltq_A 77 SVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKR 126 (301)
T ss_dssp TCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHC
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhc
Confidence 78899999887777778888888887888889999999999999999765
No 43
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.52 E-value=7.9e-14 Score=115.90 Aligned_cols=171 Identities=13% Similarity=0.181 Sum_probs=93.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC---ccccccccccC---CCCHHHHH-----HHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG---DNLRNGINANL---AFSEEDRN-----ENVRRAAECAK 88 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~---D~i~~~l~~~~---~~~~~~~~-----~~~~~i~~~~~ 88 (272)
++|++|+|+|+|||||||+|+.|++.++..| ++...+. +.++..+.... .+...... ..+..+...+.
T Consensus 2 m~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~i~ 80 (213)
T 2plr_A 2 KKGVLIAFEGIDGSGKSSQATLLKDWIELKR-DVYLTEWNSSDWIHDIIKEAKKKDLLTPLTFSLIHATDFSDRYERYIL 80 (213)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEEEETTCCCHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEEecCCcHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999995444 4544322 22222221111 13321110 00111112234
Q ss_pred HHHhCCCeEEEcCCCCcHH-H-------HHHHHHHHHhCCCceEEEEEeCCHHHHHHhhh-hhhh-hhhhhc-------c
Q psy17388 89 MFAECGFIALCSFVSPTAA-A-------RDRAREIHRNANLEFFEVFVNTPVEICEQRDV-KGHY-KKAREG-------K 151 (272)
Q Consensus 89 ~~~~~g~~VI~d~~~~~~~-~-------r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~-~r~~-~~~r~~-------~ 151 (272)
..+..|..||+|....... + .+.+..+......+.++|||++|++++.+|+. +|.. .+...+ +
T Consensus 81 ~~l~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~~~~~~~~g~~~~~~~d 160 (213)
T 2plr_A 81 PMLKSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKRKIKPQEAGADIFPGLS 160 (213)
T ss_dssp HHHHTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTCCCCTTTTTTTTCTTSC
T ss_pred HHHhCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcccccccccccccccccccc
Confidence 4556788899886321100 0 12233333323335678999999999999997 5531 010000 0
Q ss_pred -c---ccc-ccccccCCCC--CCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388 152 -I---KSF-TGVSQPYEAP--KNPDLILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 152 -~---~~~-~~~~~~ye~~--~~~~~~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
. ..+ ..+...|+.. ....++||++ .++++++++|.+.+..
T Consensus 161 ~~e~~~~~~~r~~~~~~~~~~~~~~~~Id~~-~~~e~v~~~I~~~l~~ 207 (213)
T 2plr_A 161 PEEGFLKYQGLITEVYDKLVKDENFIVIDGT-KTPKEIQIQIRKFVGE 207 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTCEEEETT-SCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHhhCCEEEEECC-CCHHHHHHHHHHHHHH
Confidence 0 011 1112223211 1156889975 6999999999998864
No 44
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=99.52 E-value=5.3e-14 Score=119.82 Aligned_cols=158 Identities=16% Similarity=0.217 Sum_probs=92.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc-----ccCCCCHH--------------------
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN-----ANLAFSEE-------------------- 74 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~-----~~~~~~~~-------------------- 74 (272)
++|.+|+|.|+|||||||+++.|++.+ ++.++|.|.+...+. .+......
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~l-----g~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~ 81 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARAL-----GARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDV 81 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHH-----TCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh-----CCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCC
Confidence 457899999999999999999999999 567788877643321 11111000
Q ss_pred -------------HH--------------HHHHHHHHHHHHHHHhC-CCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEE
Q psy17388 75 -------------DR--------------NENVRRAAECAKMFAEC-GFIALCSFVSPTAAARDRAREIHRNANLEFFEV 126 (272)
Q Consensus 75 -------------~~--------------~~~~~~i~~~~~~~~~~-g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V 126 (272)
-+ ....+.+.+..+.+.+. |.+|+......+. .+.+ ..+.|
T Consensus 82 ~~v~l~g~~v~~~ir~~~v~~~~s~va~~~~vr~~l~~~qr~~a~~~~~~V~~GRd~gt~--------V~pd---a~lki 150 (233)
T 3r20_A 82 DAAFLAGEDVSSEIRGDAVTGAVSAVSAVPAVRTRLVDIQRKLATEGGRVVVEGRDIGTV--------VLPD---ADVKI 150 (233)
T ss_dssp CCEEETTEECTTGGGSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTSSSCEEEEESSCCCC--------CCTT---CSEEE
T ss_pred cEEEECCeehhhhhcchHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCcEEEecccceeE--------EcCC---CCEEE
Confidence 00 11123344455566666 6566543211100 0111 23789
Q ss_pred EEeCCHHHHHHhhhhhhhhhhhhc-------cccccccccc-cCCCCC-CCc--EEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388 127 FVNTPVEICEQRDVKGHYKKAREG-------KIKSFTGVSQ-PYEAPK-NPD--LILETVNVPVEKCANSVLDMIAAK 193 (272)
Q Consensus 127 ~L~~~~e~~~~Rl~~r~~~~~r~~-------~~~~~~~~~~-~ye~~~-~~~--~~Idt~~~~~ee~~~~I~~~L~~~ 193 (272)
||++|.+++.+|+.++++.+.... .+......+. .|..|- .++ ++|||++++++++++.|++.+.++
T Consensus 151 fl~A~~e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~IDTs~l~iee~v~~I~~~i~~~ 228 (233)
T 3r20_A 151 FLTASAEERARRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDTSDMDQAQVIAHLLDLVTAQ 228 (233)
T ss_dssp EEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEECTTSCHHHHHHHHHHHC---
T ss_pred EEECCHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEEECCCCCHHHHHHHHHHHHHHh
Confidence 999999999999876543221111 1111111222 344442 223 999999999999999999988765
No 45
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.51 E-value=1.1e-13 Score=113.69 Aligned_cols=160 Identities=12% Similarity=0.030 Sum_probs=92.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc-c--------------cCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN-A--------------NLAFSEEDRNENVRRAA 84 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~-~--------------~~~~~~~~~~~~~~~i~ 84 (272)
.++.+|+|+|+|||||||+|+.|++.+ +..++|.|.+..... . +..... ......+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l-----~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~---~~~~~~~~ 78 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY-----GYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPL---ETVLDMLR 78 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH-----CCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCH---HHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh-----CCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCH---HHHHHHHH
Confidence 467899999999999999999999999 566777766433211 0 000111 11122223
Q ss_pred HHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcc-cccc-ccccc--
Q psy17388 85 ECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGK-IKSF-TGVSQ-- 160 (272)
Q Consensus 85 ~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~-~~~~-~~~~~-- 160 (272)
..+......|..||+|+.......+..+...+ ..+..+|||++|++++.+|+.+|.....+... ...+ ..+..
T Consensus 79 ~~i~~~~~~~~~vi~d~~~~~~~~~~~~~~~~---~~~~~vi~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~ 155 (196)
T 2c95_A 79 DAMVAKVNTSKGFLIDGYPREVQQGEEFERRI---GQPTLLLYVDAGPETMTQRLLKRGETSGRVDDNEETIKKRLETYY 155 (196)
T ss_dssp HHHHHHTTTCSCEEEESCCCSHHHHHHHHHHT---CCCSEEEEEECCHHHHHHHHHHHHTSSSCGGGSHHHHHHHHHHHH
T ss_pred HHHHhccccCCcEEEeCCCCCHHHHHHHHHhc---CCCCEEEEEECCHHHHHHHHHccCCcCCCCCCCHHHHHHHHHHHH
Confidence 33344455677888886433333333333333 23558899999999999999765321111000 0000 00111
Q ss_pred --------cCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388 161 --------PYEAPKNPDLILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 161 --------~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
.|.. ....++||++ .++++++++|.+.+..
T Consensus 156 ~~~~~~~~~~~~-~~~~~~Id~~-~~~e~v~~~i~~~l~~ 193 (196)
T 2c95_A 156 KATEPVIAFYEK-RGIVRKVNAE-GSVDSVFSQVCTHLDA 193 (196)
T ss_dssp HHTHHHHHHHHH-HTCEEEEECC-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCcEEEEECC-CCHHHHHHHHHHHHHH
Confidence 1111 0112468864 7999999999998864
No 46
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.51 E-value=9e-14 Score=115.29 Aligned_cols=166 Identities=11% Similarity=0.054 Sum_probs=90.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccc-ccccCCCCHHHHHHHH--------HHHHHHHHH
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNG-INANLAFSEEDRNENV--------RRAAECAKM 89 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~-l~~~~~~~~~~~~~~~--------~~i~~~~~~ 89 (272)
+.+|++|+|+|+|||||||+|+.|++.+ | ..+++.|.+... +..+....... ...+ .....++..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l---~--~~~i~~d~~~r~~~~~~~~~g~~i-~~~~~~g~~~~~~~~~~~~~~ 90 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKL---G--IPQISTGELFRRNIEEGTKLGVEA-KRYLDAGDLVPSDLTNELVDD 90 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHH---T--CCEEEHHHHHHHHHHTTCHHHHHH-HHHHHHTCCCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh---C--CcEEehhHHHHHHHHcCChHHHHH-HHHHHcCCcccHHHHHHHHHH
Confidence 3567899999999999999999999999 3 456776554221 11110000000 0000 001111111
Q ss_pred H---HhCCCeEEEcCCCCcHHHHHHHHHHHHhCCC-ceEEEEEeCCHHHHHHhhhhhhhhhhhhccccc-cccccccC--
Q psy17388 90 F---AECGFIALCSFVSPTAAARDRAREIHRNANL-EFFEVFVNTPVEICEQRDVKGHYKKAREGKIKS-FTGVSQPY-- 162 (272)
Q Consensus 90 ~---~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~-~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~-~~~~~~~y-- 162 (272)
. ...+..+|+|+.......+..+..++...+. +..+|||++|++++.+|+.+|.+.......+.. +.......
T Consensus 91 ~~~~~~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~r~~~~~e~~~~r~~~~~~~~~~ 170 (201)
T 2cdn_A 91 RLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRADDTDDVILNRMKVYRDETAP 170 (201)
T ss_dssp HTTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHHTTT
T ss_pred HHhcccCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhHH
Confidence 1 1234457777543333455556665655443 447899999999999999765211000000000 00001000
Q ss_pred --CCCCCCcEEEeCCCCCHHHHHHHHHHHHH
Q psy17388 163 --EAPKNPDLILETVNVPVEKCANSVLDMIA 191 (272)
Q Consensus 163 --e~~~~~~~~Idt~~~~~ee~~~~I~~~L~ 191 (272)
+......++||+ +.++++++++|.+.+.
T Consensus 171 ~~~~~~~~~~~Id~-~~~~eev~~~I~~~l~ 200 (201)
T 2cdn_A 171 LLEYYRDQLKTVDA-VGTMDEVFARALRALG 200 (201)
T ss_dssp HHHHTTTTEEEEEC-CSCHHHHHHHHHHHTT
T ss_pred HHHHhcCcEEEEeC-CCCHHHHHHHHHHHHc
Confidence 011235678887 4799999999988764
No 47
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=99.51 E-value=3.9e-13 Score=113.08 Aligned_cols=171 Identities=13% Similarity=0.127 Sum_probs=101.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCC-CEEEecCc-------ccccccc--c---cCCCCHHHHH-----HHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGI-PAYALDGD-------NLRNGIN--A---NLAFSEEDRN-----ENVRR 82 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~-~~~~ld~D-------~i~~~l~--~---~~~~~~~~~~-----~~~~~ 82 (272)
+|.+|+|.|++||||||+++.|++.|...|+ .+.+.... .++..+. . ...+++.... ...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~~~ 81 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQL 81 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHHHH
Confidence 5789999999999999999999999998887 55443321 1122221 1 1123322111 11122
Q ss_pred HHHHHHHHHhCCCeEEEcCCCC------------cHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhh-hhhhh
Q psy17388 83 AAECAKMFAECGFIALCSFVSP------------TAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHY-KKARE 149 (272)
Q Consensus 83 i~~~~~~~~~~g~~VI~d~~~~------------~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~-~~~r~ 149 (272)
+.+.++..++.|.+||+|.... ...+...+...+.....|.++|||++|++++.+|+.+|.. .+...
T Consensus 82 ~~~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R~~~dr~E~ 161 (213)
T 4tmk_A 82 VETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIEQ 161 (213)
T ss_dssp HHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHSSCCTTTT
T ss_pred HHHHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCccchhh
Confidence 3345667788999999984211 1123333333333334688999999999999999976521 00000
Q ss_pred ccccccccccccCCCC---CCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388 150 GKIKSFTGVSQPYEAP---KNPDLILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 150 ~~~~~~~~~~~~ye~~---~~~~~~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
.....+..++..|... ....++||+ +.+++++.++|.+.+.+
T Consensus 162 ~~~~f~~rv~~~y~~la~~~~~~~vIDa-~~s~eeV~~~I~~~l~~ 206 (213)
T 4tmk_A 162 ESFDFFNRTRARYLELAAQDKSIHTIDA-TQPLEAVMDAIRTTVTH 206 (213)
T ss_dssp SCHHHHHHHHHHHHHHHHTCTTEEEEET-TSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHCCcEEEECC-CCCHHHHHHHHHHHHHH
Confidence 0011122233344321 123467775 67999999999998875
No 48
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.51 E-value=2.4e-15 Score=122.98 Aligned_cols=155 Identities=14% Similarity=0.108 Sum_probs=86.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccC---CCCHHHHHHHHHHH-HHHHHHHHhCCCeEE
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANL---AFSEEDRNENVRRA-AECAKMFAECGFIAL 98 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~---~~~~~~~~~~~~~i-~~~~~~~~~~g~~VI 98 (272)
++|+|+|+|||||||+|+.|++++ ++.++|.|.+........ .|. ......++.. ......+......|+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l-----g~~~id~D~~~~~~~g~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~vi 76 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL-----GVGLLDTDVAIEQRTGRSIADIFA-TDGEQEFRRIEEDVVRAALADHDGVL 76 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH-----TCCEEEHHHHHHHHHSSCHHHHHH-HHCHHHHHHHHHHHHHHHHHHCCSEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc-----CCCEEeCchHHHHHcCCCHHHHHH-HhChHHHHHHHHHHHHHHHhcCCeEE
Confidence 469999999999999999999999 456788888755332110 010 1111222222 222333333344455
Q ss_pred EcCCCC-c-HHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCC---C--CCCCcEE
Q psy17388 99 CSFVSP-T-AAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYE---A--PKNPDLI 171 (272)
Q Consensus 99 ~d~~~~-~-~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye---~--~~~~~~~ 171 (272)
.++... . ...++ .+. .+ .+|||+||.+++.+|+.+|......... .....+...|. + ...++++
T Consensus 77 ~~g~~~v~~~~~~~----~l~-~~---~vV~L~~~~e~~~~Rl~~r~~r~~~~~~-~~~~~i~~~~~~r~~~~~~~~~~~ 147 (184)
T 2iyv_A 77 SLGGGAVTSPGVRA----ALA-GH---TVVYLEISAAEGVRRTGGNTVRPLLAGP-DRAEKYRALMAKRAPLYRRVATMR 147 (184)
T ss_dssp ECCTTGGGSHHHHH----HHT-TS---CEEEEECCHHHHHHHTTCCCCCSSTTSC-CHHHHHHHHHHHHHHHHHHHCSEE
T ss_pred ecCCcEEcCHHHHH----HHc-CC---eEEEEeCCHHHHHHHHhCCCCCCCccCC-CHHHHHHHHHHHHHHHHhccCCEE
Confidence 433211 1 12222 222 22 5799999999999999655210000000 00001111111 1 1236799
Q ss_pred EeCCCCCHHHHHHHHHHHHHh
Q psy17388 172 LETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 172 Idt~~~~~ee~~~~I~~~L~~ 192 (272)
|||++.++++++++|.+.+..
T Consensus 148 Idt~~~s~ee~~~~I~~~l~~ 168 (184)
T 2iyv_A 148 VDTNRRNPGAVVRHILSRLQV 168 (184)
T ss_dssp EECSSSCHHHHHHHHHTTSCC
T ss_pred EECCCCCHHHHHHHHHHHHhh
Confidence 999888999999999887753
No 49
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.50 E-value=1.9e-15 Score=123.21 Aligned_cols=153 Identities=13% Similarity=0.087 Sum_probs=84.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc--c--cCCCCHH--HHHHHHHHHHHHHHHHHhC
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN--A--NLAFSEE--DRNENVRRAAECAKMFAEC 93 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~--~--~~~~~~~--~~~~~~~~i~~~~~~~~~~ 93 (272)
+++.+|+|+|+|||||||+++.|++.+ +..+++.|.+..... . +..+... ....... .+...+..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~-----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 79 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS-----GLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVD----ELDNQMRE 79 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH-----CCEEEEHHHHHHHHTCEEEEETTTTEEEECHHHHHH----HHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh-----CCeEEEHHHHHhhcchhhhhhhhhcCccCChHHHHH----HHHHHHhc
Confidence 456789999999999999999999999 567777776533211 0 1111100 0111112 22223334
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCC---CCCCCcE
Q psy17388 94 GFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYE---APKNPDL 170 (272)
Q Consensus 94 g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye---~~~~~~~ 170 (272)
|..|+....... +.. +....+|||+||++++.+|+.+|.+.............+...|+ +...+++
T Consensus 80 g~~vv~~~~~~~----------~~~-~~~~~vi~L~~~~e~l~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 148 (180)
T 3iij_A 80 GGVIVDYHGCDF----------FPE-RWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCEIFQVLYEEATASYKEEI 148 (180)
T ss_dssp CCEEEECSCCTT----------SCG-GGCSEEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHSCGGG
T ss_pred CCEEEEechhhh----------cch-hcCCEEEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 555553222110 100 01347899999999999999776432211111000011111111 1011478
Q ss_pred EEeCCCCCHHHH---HHHHHHHHHh
Q psy17388 171 ILETVNVPVEKC---ANSVLDMIAA 192 (272)
Q Consensus 171 ~Idt~~~~~ee~---~~~I~~~L~~ 192 (272)
+|++++.+++++ +++|+..|.+
T Consensus 149 ~i~~~~~~~~ev~~~v~~i~~~l~~ 173 (180)
T 3iij_A 149 VHQLPSNKPEELENNVDQILKWIEQ 173 (180)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 899888999999 7777776654
No 50
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=99.50 E-value=4.9e-13 Score=111.82 Aligned_cols=169 Identities=14% Similarity=0.177 Sum_probs=96.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC-------ccccccccccCCCCHHHHHH-----HHHHHHHHHHH
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG-------DNLRNGINANLAFSEEDRNE-----NVRRAAECAKM 89 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~-------D~i~~~l~~~~~~~~~~~~~-----~~~~i~~~~~~ 89 (272)
+.+|+|.|..||||||+++.|++.|. +|+++..... ..++..+.....++...... ..+.+.+.+..
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~~eP~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~~~i~p 80 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVIP 80 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEEESSTTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEeeCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999995 5777665432 11222221222233221110 01123344566
Q ss_pred HHhCCCeEEEcCCCC------------cHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhc--ccccc
Q psy17388 90 FAECGFIALCSFVSP------------TAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREG--KIKSF 155 (272)
Q Consensus 90 ~~~~g~~VI~d~~~~------------~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~--~~~~~ 155 (272)
.+..|.+||+|.... ...+...+...+...-.|.++|||++|++++.+|+.+|.....|-. ....+
T Consensus 81 ~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~~~dr~e~~~~~f~ 160 (205)
T 4hlc_A 81 ALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLKFH 160 (205)
T ss_dssp HHHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC-------CCHHHHHHH
T ss_pred HHHcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCCcccchhccCHHHH
Confidence 778999999984211 1122233333333334588999999999999999976633222210 11112
Q ss_pred ccccccCCCC--CCC--cEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388 156 TGVSQPYEAP--KNP--DLILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 156 ~~~~~~ye~~--~~~--~~~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
..+++.|... ..+ -++||. +.+++++.++|.+.+.+
T Consensus 161 ~~v~~~Y~~l~~~~~~~~~~IDa-~~~~e~V~~~i~~~i~~ 200 (205)
T 4hlc_A 161 EKVIEGYQEIIHNESQRFKSVNA-DQPLENVVEDTYQTIIK 200 (205)
T ss_dssp HHHHHHHHHHHHSCCTTEEEEET-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEEEC-CCCHHHHHHHHHHHHHH
Confidence 2334444321 122 356675 57999999999888765
No 51
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.49 E-value=5e-13 Score=113.65 Aligned_cols=171 Identities=15% Similarity=0.159 Sum_probs=95.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc-------cccccccccCCCCHHHHHHHH--HHHH---HHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD-------NLRNGINANLAFSEEDRNENV--RRAA---ECA 87 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D-------~i~~~l~~~~~~~~~~~~~~~--~~i~---~~~ 87 (272)
.++.+|+|.|+|||||||+++.|++.+.. |..+...... .++..+.....+........+ .+.. +.+
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~~~~~~i 102 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKV 102 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEECTTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeecCCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999965 5565433211 011111111112221110000 0110 112
Q ss_pred HHHHhCCCeEEEc----------CC--CCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhc--ccc
Q psy17388 88 KMFAECGFIALCS----------FV--SPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREG--KIK 153 (272)
Q Consensus 88 ~~~~~~g~~VI~d----------~~--~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~--~~~ 153 (272)
...++.|.+||+| +. .........+..+......+..+|||++|++++.+|+.+|.....+.. ...
T Consensus 103 ~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~dr~e~~~~~ 182 (229)
T 4eaq_A 103 IPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLK 182 (229)
T ss_dssp HHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC-----CCCHHHHH
T ss_pred HHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCccchhhhhHH
Confidence 3455688899988 32 112234445555554444678899999999999999976532111110 001
Q ss_pred ccccccccCCCC----CCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388 154 SFTGVSQPYEAP----KNPDLILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 154 ~~~~~~~~ye~~----~~~~~~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
.+..++..|+.. ....++||+ +.+++++.++|.+.|.+
T Consensus 183 ~~~rv~~~y~~l~~~~~~~~~vIDa-~~s~eev~~~I~~~l~~ 224 (229)
T 4eaq_A 183 FHEKVIEGYQEIIHNESQRFKSVNA-DQPLENVVEDTYQTIIK 224 (229)
T ss_dssp HHHHHHHHHHHHTTTCTTTEEEEET-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEeC-CCCHHHHHHHHHHHHHH
Confidence 112223333221 122367776 57999999999998875
No 52
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.49 E-value=7e-13 Score=110.48 Aligned_cols=168 Identities=12% Similarity=0.062 Sum_probs=91.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc--------ccccccccCCCCHHHHHHH-----HHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN--------LRNGINANLAFSEEDRNEN-----VRRAAEC 86 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~--------i~~~l~~~~~~~~~~~~~~-----~~~i~~~ 86 (272)
++|++|+|+|+|||||||+++.|++.++..++.+..+.... ++..+..+..+........ ++.+ +.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~ 85 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQV-PL 85 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTH-HH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEeeCCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-HH
Confidence 46789999999999999999999999987777765543211 1111211223333211100 0011 23
Q ss_pred HHHHHhCCCeEEEcCCCC----cH-----HHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcccccccc
Q psy17388 87 AKMFAECGFIALCSFVSP----TA-----AARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTG 157 (272)
Q Consensus 87 ~~~~~~~g~~VI~d~~~~----~~-----~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~ 157 (272)
+...+..|..||+|.... +. ...+.+..+......+..+|||++|++++.+|+.++. .+.........
T Consensus 86 i~~~l~~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~~---~~~~~~~~~~~ 162 (215)
T 1nn5_A 86 IKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGH---ERYENGAFQER 162 (215)
T ss_dssp HHHHHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC--------CTTCSHHHHHH
T ss_pred HHHHHHCCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCc---cccchHHHHHH
Confidence 344556788888884211 00 0122222222222235688999999999999985331 11100001111
Q ss_pred ccccCCC---C-CCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388 158 VSQPYEA---P-KNPDLILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 158 ~~~~ye~---~-~~~~~~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
+...|.. . ....++||+ +.++++++++|.+.+.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~Id~-~~~~e~~~~~i~~~l~~ 200 (215)
T 1nn5_A 163 ALRCFHQLMKDTTLNWKMVDA-SKSIEAVHEDIRVLSED 200 (215)
T ss_dssp HHHHHHHHTTCTTSCEEEEET-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEEC-CCCHHHHHHHHHHHHHH
Confidence 2222321 1 123478886 57999999999988865
No 53
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.49 E-value=4.6e-14 Score=121.61 Aligned_cols=158 Identities=12% Similarity=0.155 Sum_probs=91.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCC---HHHHHHHHHHH-HHHHHHHHhC-CCe
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFS---EEDRNENVRRA-AECAKMFAEC-GFI 96 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~---~~~~~~~~~~i-~~~~~~~~~~-g~~ 96 (272)
+.+|+|+|+|||||||+++.|++.+ +..++|.|.+......+.... ....+..++.+ .++...+... ...
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l-----g~~~~d~d~~~~~~~~g~~i~~i~~~~ge~~fr~~e~~~l~~l~~~~~~~ 122 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL-----GYTFFDCDTLIEQAMKGTSVAEIFEHFGESVFREKETEALKKLSLMYHQV 122 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH-----TCEEEEHHHHHHHHSTTSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCSSE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc-----CCcEEeCcHHHHHHhcCccHHHHHHHhCcHHHHHHHHHHHHHHHhhcCCc
Confidence 6789999999999999999999999 567889887654332111110 01112233333 2234444443 446
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh-hhhhhh-c------------ccccc-cccccc
Q psy17388 97 ALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH-YKKARE-G------------KIKSF-TGVSQP 161 (272)
Q Consensus 97 VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~-~~~~r~-~------------~~~~~-~~~~~~ 161 (272)
||+++.... .+...+..++ .+ ++|||++|.+++.+|+.++. ..+... . .+..+ ......
T Consensus 123 Via~GgG~v--~~~~~~~~l~-~~---~vV~L~a~~e~l~~Rl~~~~~~~Rpl~~~~~~~d~~~~~~~~l~~l~~eR~~l 196 (250)
T 3nwj_A 123 VVSTGGGAV--IRPINWKYMH-KG---ISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGEA 196 (250)
T ss_dssp EEECCGGGG--GSHHHHHHHT-TS---EEEEEECCHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCee--cCHHHHHHHh-CC---cEEEEECCHHHHHHHHhhcCCCCCCcccCCCcccchhhHHHHHHHHHHHHHHH
Confidence 665542211 1112223333 23 78999999999999986421 001000 0 01111 111122
Q ss_pred CCCCCCCcEEE------------eCCCCCHHHHHHHHHHHHHhC
Q psy17388 162 YEAPKNPDLIL------------ETVNVPVEKCANSVLDMIAAK 193 (272)
Q Consensus 162 ye~~~~~~~~I------------dt~~~~~ee~~~~I~~~L~~~ 193 (272)
|+ .++++| ||+++++++++++|++.+...
T Consensus 197 Y~---~ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~~~ 237 (250)
T 3nwj_A 197 YT---KASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSY 237 (250)
T ss_dssp HT---TSSEEEEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHH
T ss_pred Hh---hCCEEEEecccccccccccCCCCCHHHHHHHHHHHHHHH
Confidence 33 367777 999999999999999988753
No 54
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=99.49 E-value=9.7e-14 Score=117.86 Aligned_cols=170 Identities=14% Similarity=0.113 Sum_probs=98.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHc----CCCEEEecCc-------cccccccccCCCCHHHH-----HHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQ----GIPAYALDGD-------NLRNGINANLAFSEEDR-----NENVRRA 83 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~----g~~~~~ld~D-------~i~~~l~~~~~~~~~~~-----~~~~~~i 83 (272)
++|.+|+|.|++||||||+++.|++.|... |+.+..+..- .+++.+..+ .+++... ...++.+
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~g~~ir~~l~~~-~~~~~~~~llf~a~R~~~~ 101 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILLNQ-PMDLETEALLMFAGRREHL 101 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCChHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999877 8777654311 122211111 2222111 0111223
Q ss_pred HHHHHHHHhCCCeEEEcCCC------------CcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhc-
Q psy17388 84 AECAKMFAECGFIALCSFVS------------PTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREG- 150 (272)
Q Consensus 84 ~~~~~~~~~~g~~VI~d~~~------------~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~- 150 (272)
.+.++..++.|.+||+|... ....+...+...+.....|.++|||++|++++.+|+.+|.. ..+..
T Consensus 102 ~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~~-~dr~E~ 180 (227)
T 3v9p_A 102 ALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRM-PDKFES 180 (227)
T ss_dssp HHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCCC-C---CC
T ss_pred HHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccC-ccchhh
Confidence 34455667889999998421 11122333333333335688999999999999999976521 00100
Q ss_pred -cccccccccccCCCC----CCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388 151 -KIKSFTGVSQPYEAP----KNPDLILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 151 -~~~~~~~~~~~ye~~----~~~~~~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
....+..++..|+.. ....++||+ +.+++++.++|.+.|..
T Consensus 181 ~~~ef~~rv~~~Y~~la~~~~~~~~vIDa-~~s~eeV~~~I~~~l~~ 226 (227)
T 3v9p_A 181 ESDAFFARTRAEYLRRAQEAPHRFVIVDS-SEPIAQIRKQLEGVLAA 226 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTEEEEET-TSCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCEEEEeC-CCCHHHHHHHHHHHHHh
Confidence 011122334444321 123477886 57999999999998864
No 55
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=99.49 E-value=4e-13 Score=114.69 Aligned_cols=173 Identities=11% Similarity=0.126 Sum_probs=98.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCC-EEEecC-------cccccccccc---CCCCHHHHH-----HHHHH
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIP-AYALDG-------DNLRNGINAN---LAFSEEDRN-----ENVRR 82 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~-~~~ld~-------D~i~~~l~~~---~~~~~~~~~-----~~~~~ 82 (272)
.++|.+|+|.|++||||||+++.|++.|...|++ +..+.. ..++..+..+ ..+++.... ..++.
T Consensus 24 ~~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~~ 103 (236)
T 3lv8_A 24 AMNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQL 103 (236)
T ss_dssp --CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999988887 544431 1122222111 123321111 11222
Q ss_pred HHHHHHHHHhCCCeEEEcCCC------------CcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhh-hhhhh
Q psy17388 83 AAECAKMFAECGFIALCSFVS------------PTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHY-KKARE 149 (272)
Q Consensus 83 i~~~~~~~~~~g~~VI~d~~~------------~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~-~~~r~ 149 (272)
+.+.++..++.|.+||+|... ....+...+...+.....|.++|||++|++++.+|+.+|.. .+...
T Consensus 104 ~~~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~~dr~E~ 183 (236)
T 3lv8_A 104 VENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGELDRIEK 183 (236)
T ss_dssp HHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----CCCTTTT
T ss_pred HHHHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhh
Confidence 334556677899999998421 11122333333333334588999999999999999976521 00000
Q ss_pred ccccccccccccCCCC--CCC-cEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388 150 GKIKSFTGVSQPYEAP--KNP-DLILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 150 ~~~~~~~~~~~~ye~~--~~~-~~~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
.....+..++..|... ..+ .++||+ +.+++++.++|.+.|.+
T Consensus 184 ~~~~~~~rv~~~y~~la~~~~~~~vIDa-~~sieeV~~~I~~~l~~ 228 (236)
T 3lv8_A 184 MDISFFERARERYLELANSDDSVVMIDA-AQSIEQVTADIRRALQD 228 (236)
T ss_dssp SCHHHHHHHHHHHHHHHHHCTTEEEEET-TSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHCCCEEEEeC-CCCHHHHHHHHHHHHHH
Confidence 0011122334444321 012 467776 57999999999998875
No 56
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.47 E-value=9.4e-14 Score=113.42 Aligned_cols=162 Identities=13% Similarity=0.101 Sum_probs=89.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc-cccccCCCCHHHHHHHH--------HHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN-GINANLAFSEEDRNENV--------RRAAECAKMF 90 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~-~l~~~~~~~~~~~~~~~--------~~i~~~~~~~ 90 (272)
.+|++|+|+|+|||||||+|+.|++.+ +..++|.|.+.. .+..+......- ...+ ..+...+...
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l-----~~~~i~~d~~~~~~~~~~~~~~~~i-~~~~~~g~~~~~~~~~~~~~~~ 75 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL-----GFKKLSTGDILRDHVARGTPLGERV-RPIMERGDLVPDDLILELIREE 75 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH-----TCEEECHHHHHHHHHHTTCHHHHHH-HHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh-----CCeEecHHHHHHHHHHcCChHHHHH-HHHHHcCCcCCHHHHHHHHHHH
Confidence 357899999999999999999999998 567788765432 211110000000 0000 0111223333
Q ss_pred HhCCCeEEEcCCCCcHHHHHHHHHHHHhCCC-ceEEEEEeCCHHHHHHhhhhhhhhhhhhcc-ccccc-ccc--------
Q psy17388 91 AECGFIALCSFVSPTAAARDRAREIHRNANL-EFFEVFVNTPVEICEQRDVKGHYKKAREGK-IKSFT-GVS-------- 159 (272)
Q Consensus 91 ~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~-~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~-~~~~~-~~~-------- 159 (272)
+..+ +|+++.......+..+..++...|. +..+|||++|++++.+|+.+|.....+... ...+. .+.
T Consensus 76 l~~~--~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~r~~~~~~~~~~ 153 (186)
T 3cm0_A 76 LAER--VIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAELEGRSDDNEETVRRRLEVYREKTEP 153 (186)
T ss_dssp CCSE--EEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred hcCC--EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3444 6666544333444445555554443 457899999999999999766311111110 00010 011
Q ss_pred --ccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHH
Q psy17388 160 --QPYEAPKNPDLILETVNVPVEKCANSVLDMIA 191 (272)
Q Consensus 160 --~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~ 191 (272)
..|.. ....++||++ .++++++++|.+.+.
T Consensus 154 l~~~~~~-~~~~~~id~~-~~~~~v~~~i~~~l~ 185 (186)
T 3cm0_A 154 LVGYYEA-RGVLKRVDGL-GTPDEVYARIRAALG 185 (186)
T ss_dssp HHHHHHH-TTCEEEEECC-SCHHHHHHHHHHHHT
T ss_pred HHHHHHh-cCcEEEEECC-CCHHHHHHHHHHHhc
Confidence 11111 1124788874 799999999988763
No 57
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.47 E-value=1.2e-13 Score=112.87 Aligned_cols=41 Identities=20% Similarity=0.253 Sum_probs=33.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
++++|+|+|+|||||||+++.|++.++..|+++.+++.|.+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~ 42 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSV 42 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHH
Confidence 46799999999999999999999999766655777775543
No 58
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=99.47 E-value=2.1e-13 Score=128.31 Aligned_cols=118 Identities=10% Similarity=0.150 Sum_probs=86.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHH-c-CCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCe
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLIA-Q-GIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFI 96 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~-~-g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~ 96 (272)
.+++.+|||+|+|||||||+|++|+++|.. . +.++.++|+|. . . .+..++..+.+.|..
T Consensus 392 ~~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~-----~------~--------ei~~va~~~~~~G~~ 452 (511)
T 1g8f_A 392 PKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN-----K------T--------ELLSLIQDFIGSGSG 452 (511)
T ss_dssp GGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT-----C------H--------HHHTTHHHHHHTTCE
T ss_pred cccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC-----c------H--------HHHHHHHHHHhcCCe
Confidence 356789999999999999999999999964 3 35678999987 1 0 033445566778888
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCCCCCcEEEeCCC
Q psy17388 97 ALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVN 176 (272)
Q Consensus 97 VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~~~~~~~Idt~~ 176 (272)
||++..++ ...| .+++. | .|+.|| .|..++++|||+.
T Consensus 453 Vv~~~~sp-~~~R----~~l~~-g-~fv~v~------------------------------------~p~~adI~IDTs~ 489 (511)
T 1g8f_A 453 LIIPDQWE-DDKD----SVVGK-Q-NVYLLD------------------------------------TSSSADIQLESAD 489 (511)
T ss_dssp EEESSCCC-GGGG----GGSCC-T-TEEEEE------------------------------------SSTTCSEECSSTT
T ss_pred EEEecCCH-HHHH----HHhcC-C-CEEEEe------------------------------------cCCCCcEEEECCC
Confidence 88887766 1122 22222 2 343333 2345789999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCCC
Q psy17388 177 VPVEKCANSVLDMIAAKGLIPA 198 (272)
Q Consensus 177 ~~~ee~~~~I~~~L~~~~~~~~ 198 (272)
.++++++++|++.|.+.|++.+
T Consensus 490 ~s~eevV~~Il~~L~~~g~~~~ 511 (511)
T 1g8f_A 490 EPISHIVQKVVLFLEDNGFFVF 511 (511)
T ss_dssp CCHHHHHHHHHHHHHHTTSCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999988753
No 59
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=99.46 E-value=2.1e-13 Score=115.38 Aligned_cols=175 Identities=12% Similarity=0.147 Sum_probs=90.1
Q ss_pred hhhhhhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH-cCCCEEE-ecC--c-----cccccccccCCCCHHHHH----
Q psy17388 11 SWLRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIA-QGIPAYA-LDG--D-----NLRNGINANLAFSEEDRN---- 77 (272)
Q Consensus 11 ~~~r~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~-~g~~~~~-ld~--D-----~i~~~l~~~~~~~~~~~~---- 77 (272)
.++.+.+.+++|++|+|.|++||||||+++.|++.|.. .|+++.+ ... + .++..+.....++.....
T Consensus 10 ~~~~~~~~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~l~~~~~~~~~~e~llf~ 89 (223)
T 3ld9_A 10 GTLEAQTQGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLFKAQGLDSLSELLFFI 89 (223)
T ss_dssp ---------CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred ccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 44556677788999999999999999999999999988 7877765 321 1 122222211113332111
Q ss_pred -HHHHHHHHHHHHHHhCCCeEEEcCCCC------------cHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh-
Q psy17388 78 -ENVRRAAECAKMFAECGFIALCSFVSP------------TAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH- 143 (272)
Q Consensus 78 -~~~~~i~~~~~~~~~~g~~VI~d~~~~------------~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~- 143 (272)
..++.+.++++..++.|.+||+|.... ...+...+...+.. ..|.++|||++|++++.+|+ ++.
T Consensus 90 a~R~~~~~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~-~~PDl~I~Ldv~~e~~~~Ri-~rdr 167 (223)
T 3ld9_A 90 AMRREHFVKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVID-VYPDITFIIDVDINESLSRS-CKNG 167 (223)
T ss_dssp HHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCS-SCCSEEEEEECC-------------
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhc-CCCCeEEEEeCCHHHHHHHh-ccCc
Confidence 111223344556778899999985221 01222223333333 46889999999999999998 321
Q ss_pred hhhhhhccccccccccccCCC----CCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388 144 YKKAREGKIKSFTGVSQPYEA----PKNPDLILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 144 ~~~~r~~~~~~~~~~~~~ye~----~~~~~~~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
+.. .....+..++..|.. ...+.++||+ +.+++++ ++|.+.+.+
T Consensus 168 ~E~---~~~e~~~rv~~~y~~la~~~~~~~~vIDa-~~sieeV-~~I~~~l~~ 215 (223)
T 3ld9_A 168 YEF---ADMEFYYRVRDGFYDIAKKNPHRCHVITD-KSETYDI-DDINFVHLE 215 (223)
T ss_dssp -------CHHHHHHHHHHHHHHHHHCTTTEEEEES-SCSSSCC-CHHHHHHHH
T ss_pred ccc---chHHHHHHHHHHHHHHHHHCCCCEEEEcC-CCCHHHH-HHHHHHHHH
Confidence 111 011112233444432 1134578886 5689999 888888764
No 60
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.45 E-value=2.2e-13 Score=112.21 Aligned_cols=158 Identities=9% Similarity=-0.032 Sum_probs=91.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc-c--------------cCCCCHHHHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN-A--------------NLAFSEEDRNENVRRAAE 85 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~-~--------------~~~~~~~~~~~~~~~i~~ 85 (272)
++++|+|+|+|||||||+|+.|++.+ ++.++|.|.+..... . +...... .....+..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l-----~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~---~~~~~~~~ 82 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKY-----GFTHLSTGELLREELASESERSKLIRDIMERGDLVPSG---IVLELLKE 82 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHH-----TCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHH---HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh-----CCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHH---HHHHHHHH
Confidence 46799999999999999999999999 567788776532111 0 0111111 11111222
Q ss_pred HHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhc-cccccc-cccc---
Q psy17388 86 CAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREG-KIKSFT-GVSQ--- 160 (272)
Q Consensus 86 ~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~-~~~~~~-~~~~--- 160 (272)
........|..||+|+.......+..+... .+.+.++|||+||++++.+|+.+|.....+.. ....+. .+..
T Consensus 83 ~i~~~~~~~~~vi~dg~~~~~~~~~~l~~~---~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~ 159 (199)
T 2bwj_A 83 AMVASLGDTRGFLIDGYPREVKQGEEFGRR---IGDPQLVICMDCSADTMTNRLLQMSRSSLPVDDTTKTIAKRLEAYYR 159 (199)
T ss_dssp HHHHHTTSCSCEEEETCCSSHHHHHHHHHH---TCCCSEEEEEECCHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHhcccccCccEEEeCCCCCHHHHHHHHHh---cCCCCEEEEEECCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 233334467788888654443444444322 22355789999999999999976532100100 000010 0100
Q ss_pred -------cCCCCCCCc-EEEeCCCCCHHHHHHHHHHHHHh
Q psy17388 161 -------PYEAPKNPD-LILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 161 -------~ye~~~~~~-~~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
.|.. ... ++||+ +.++++++++|.+.+..
T Consensus 160 ~~~~~~~~~~~--~~~~~~id~-~~~~e~v~~~i~~~l~~ 196 (199)
T 2bwj_A 160 ASIPVIAYYET--KTQLHKINA-EGTPEDVFLQLCTAIDS 196 (199)
T ss_dssp HHHHHHHHHHH--HSEEEEEET-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCCEEEEEC-CCCHHHHHHHHHHHHHH
Confidence 1211 123 67785 57999999999998875
No 61
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.45 E-value=4.3e-13 Score=112.79 Aligned_cols=118 Identities=12% Similarity=-0.009 Sum_probs=68.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc-cccccCCCCHHHHHHH-------HHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN-GINANLAFSEEDRNEN-------VRRAAECAKMFA 91 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~-~l~~~~~~~~~~~~~~-------~~~i~~~~~~~~ 91 (272)
.++++|+|+|+|||||||+|+.|++.+ ++.+++.|.+.. ....+..+...-+... ...+..++...+
T Consensus 3 ~~~~~I~l~G~~GsGKsT~a~~La~~l-----~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l 77 (217)
T 3be4_A 3 SKKHNLILIGAPGSGKGTQCEFIKKEY-----GLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKF 77 (217)
T ss_dssp GGCCEEEEEECTTSSHHHHHHHHHHHH-----CCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHh-----CceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHH
Confidence 456789999999999999999999999 566777765433 2111111111100000 001112222222
Q ss_pred ---hCCCeEEEcCCCCcHHHHHHHHHHHHhCC-CceEEEEEeCCHHHHHHhhhhh
Q psy17388 92 ---ECGFIALCSFVSPTAAARDRAREIHRNAN-LEFFEVFVNTPVEICEQRDVKG 142 (272)
Q Consensus 92 ---~~g~~VI~d~~~~~~~~r~~~~~~~~~~g-~~~~~V~L~~~~e~~~~Rl~~r 142 (272)
..|..+|+|+..........+..++...| .+..+|||++|++++.+|+..|
T Consensus 78 ~~~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R 132 (217)
T 3be4_A 78 DLGVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGR 132 (217)
T ss_dssp HTTTTTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTE
T ss_pred hccccCCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence 23666777753322233444444443333 3568899999999999999765
No 62
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.45 E-value=4.4e-13 Score=110.19 Aligned_cols=163 Identities=14% Similarity=0.187 Sum_probs=86.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc-------ccccccccCCCCHHHHHH-----HHHHHHHHHHHH
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN-------LRNGINANLAFSEEDRNE-----NVRRAAECAKMF 90 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~-------i~~~l~~~~~~~~~~~~~-----~~~~i~~~~~~~ 90 (272)
++|+|+|++||||||+++.|++.+...|+++...+... ++..+. +..+....... ....+.. ....
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~-i~~~ 78 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILL-EEEVTPKAELFLFLASRNLLVTE-IKQY 78 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEESSCSSHHHHHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHH-HTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeCCCCCcHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHH-HHHH
Confidence 47999999999999999999999987787775443210 111111 11122211000 0111112 2233
Q ss_pred HhCCCeEEEcCCC------------CcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccc
Q psy17388 91 AECGFIALCSFVS------------PTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGV 158 (272)
Q Consensus 91 ~~~g~~VI~d~~~------------~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~ 158 (272)
+..|..|++|... ........+.........+..+|||++|++++.+|+.+|. +......+..+
T Consensus 79 l~~g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~----~~~~~~~~~~~ 154 (197)
T 2z0h_A 79 LSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELN----RFEKREFLERV 154 (197)
T ss_dssp ----CEEEEESCHHHHHHHTTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---C----CCCCHHHHHHH
T ss_pred HhCCCEEEECCChhHHHHHHHhccCCCHHHHHHHHHHhcCCCCCCEEEEEeCCHHHHHHHHhccC----cccHHHHHHHH
Confidence 4567888887320 1122333333333333456789999999999999997651 10000111112
Q ss_pred cccCCC----CCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388 159 SQPYEA----PKNPDLILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 159 ~~~ye~----~~~~~~~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
...|.. .....++||+ +.+++++.++|.+.+.+
T Consensus 155 ~~~~~~~~~~~~~~~~~Id~-~~~~e~~~~~i~~~l~~ 191 (197)
T 2z0h_A 155 REGYLVLAREHPERIVVLDG-KRSIEEIHRDVVREVKR 191 (197)
T ss_dssp HHHHHHHHHHCTTTEEEEET-TSCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCCEEEEeC-CCCHHHHHHHHHHHHHH
Confidence 222221 1123467886 57999999999998864
No 63
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=99.44 E-value=1.2e-12 Score=108.84 Aligned_cols=165 Identities=14% Similarity=0.195 Sum_probs=96.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc---c----ccccccccCCCCHHHHHHH----HHHHHHHHHHHH
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD---N----LRNGINANLAFSEEDRNEN----VRRAAECAKMFA 91 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D---~----i~~~l~~~~~~~~~~~~~~----~~~i~~~~~~~~ 91 (272)
++|+|.|..||||||.++.|++.|...|+++.+...- . ++..+. ...+++....-. .......+...+
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~~t~~~~~ir~~l~-~~~~~~~~~~ll~~a~r~~~~~~I~~~L 79 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILL-EEEVTPKAELFLFLASRNLLVTEIKQYL 79 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHHHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCcHHHHHHHHhh-cccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999888765421 1 111111 111222111000 111223355667
Q ss_pred hCCCeEEEcCCCC------------cHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcccccccccc
Q psy17388 92 ECGFIALCSFVSP------------TAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVS 159 (272)
Q Consensus 92 ~~g~~VI~d~~~~------------~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~ 159 (272)
+.|.+||||.... ...+...+.......-.|.+++||++|++++.+|...+. |-...+.+..++
T Consensus 80 ~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~d----r~e~~ef~~rv~ 155 (197)
T 3hjn_A 80 SEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELN----RFEKREFLERVR 155 (197)
T ss_dssp TTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---C----TTCCHHHHHHHH
T ss_pred HCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcC----ccccHHHHHHHH
Confidence 8899999984221 112223333334333458899999999999999974331 111111122233
Q ss_pred ccCCCC--CCC--cEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388 160 QPYEAP--KNP--DLILETVNVPVEKCANSVLDMIAAK 193 (272)
Q Consensus 160 ~~ye~~--~~~--~~~Idt~~~~~ee~~~~I~~~L~~~ 193 (272)
+.|... ..+ -++||. +.+++++.++|.+.++++
T Consensus 156 ~~y~~la~~~~~~~~~IDa-~~~~eeV~~~I~~~i~~r 192 (197)
T 3hjn_A 156 EGYLVLAREHPERIVVLDG-KRSIEEIHRDVVREVKRR 192 (197)
T ss_dssp HHHHHHHHHCTTTEEEEET-TSCHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhCCCCEEEEcC-CCCHHHHHHHHHHHHHHH
Confidence 334321 112 356675 579999999999999876
No 64
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=99.43 E-value=5.7e-13 Score=112.32 Aligned_cols=166 Identities=14% Similarity=0.141 Sum_probs=92.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc-cccccccccCCCCHHH-----------HHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD-NLRNGINANLAFSEED-----------RNENVRRAAECA 87 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D-~i~~~l~~~~~~~~~~-----------~~~~~~~i~~~~ 87 (272)
.++++|+|.|+|||||+|+|+.|++.+ ++.++++. .+|..+..+....... .......+.+..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~-----g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l 101 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF-----HFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAM 101 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH-----CCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH-----CCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 578899999999999999999999999 67788864 4444332211000000 001111111212
Q ss_pred HHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcc--------cccccc--
Q psy17388 88 KMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGK--------IKSFTG-- 157 (272)
Q Consensus 88 ~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~--------~~~~~~-- 157 (272)
.........+|.|+. | ....+...+.........+|+|++|.+++.+|+..|.....|..+ +..+..
T Consensus 102 ~~~~~~~~g~ilDGf-P--Rt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~~~~R~DD~~e~i~~Rl~~Y~~~t 178 (217)
T 3umf_A 102 IKLVDKNCHFLIDGY-P--RELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAETSNRVDDNEETIVKRFRTFNELT 178 (217)
T ss_dssp HHHTTTCSEEEEETB-C--SSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC------CHHHHHHHHHHHHHHHHHT
T ss_pred hhccccccCcccccC-C--CcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhcccccCCCCCCCHHHHHHHHHHHHHHH
Confidence 222233445666642 3 222233333222233557899999999999999776321122111 000100
Q ss_pred --ccccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHhCCC
Q psy17388 158 --VSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGL 195 (272)
Q Consensus 158 --~~~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~~~ 195 (272)
+...|... .--+.||. +.+++++.++|.+.|++.|+
T Consensus 179 ~pl~~~Y~~~-~~l~~Idg-~~~~eeV~~~I~~~l~k~G~ 216 (217)
T 3umf_A 179 KPVIEHYKQQ-NKVITIDA-SGTVDAIFDKVNHELQKFGV 216 (217)
T ss_dssp HHHHHHHHTT-TCEEEEET-TSCHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHhc-CCEEEEEC-CCCHHHHHHHHHHHHHHcCC
Confidence 11223221 11256776 46999999999999998875
No 65
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.43 E-value=1.1e-12 Score=115.10 Aligned_cols=121 Identities=14% Similarity=0.067 Sum_probs=84.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc------cCC-CCHHHHHHHHHHH-HHHHHHH
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA------NLA-FSEEDRNENVRRA-AECAKMF 90 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~------~~~-~~~~~~~~~~~~i-~~~~~~~ 90 (272)
..+|.+|+|+|+|||||||+|+.|++.++ ....+++.|.++..+.. ..+ +.......++..+ ...+..+
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~D~~R~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~ 106 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRL 106 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECTHHHHTTSTTHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEechHhHHhchhhHHHHHHccchhhhhhhHHHHHHHHHHHHHH
Confidence 35689999999999999999999999872 25688999988764421 000 1111112333332 2344556
Q ss_pred HhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHH----HHhhhhh
Q psy17388 91 AECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEIC----EQRDVKG 142 (272)
Q Consensus 91 ~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~----~~Rl~~r 142 (272)
++.|..||++........+..+++.++..|.++.++++.+|++++ .+|+..|
T Consensus 107 l~~g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R 162 (287)
T 1gvn_B 107 SDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETM 162 (287)
T ss_dssp HHHTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHH
T ss_pred HhcCCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHH
Confidence 677888888766654456777777888888888789999999999 6776544
No 66
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.42 E-value=2e-12 Score=107.08 Aligned_cols=164 Identities=15% Similarity=0.095 Sum_probs=89.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccc-c-ccCCCCHH-----------HHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGI-N-ANLAFSEE-----------DRNENVRRAAEC 86 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l-~-~~~~~~~~-----------~~~~~~~~i~~~ 86 (272)
.++++|+|+|+|||||||+|+.|++.+ +..++|.|.+.... . .+..+... ........+.+.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~-----g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~ 87 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY-----SFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNA 87 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS-----SCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc-----CceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHH
Confidence 457899999999999999999999998 56778777543221 1 11111000 011111222333
Q ss_pred HHHHHhCC-CeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcc-ccc----ccc-cc
Q psy17388 87 AKMFAECG-FIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGK-IKS----FTG-VS 159 (272)
Q Consensus 87 ~~~~~~~g-~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~-~~~----~~~-~~ 159 (272)
+...+..| ..+|.++..........+...+. .+.++|||++|++++.+|+.+|.....+... .+. +.. ..
T Consensus 88 i~~~l~~g~~~~i~dg~~~~~~~~~~~~~~~~---~~~~~i~l~~~~e~~~~Rl~~R~~~~~~~~~~~e~~~~r~~~~~~ 164 (203)
T 1ukz_A 88 ISDNVKANKHKFLIDGFPRKMDQAISFERDIV---ESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKE 164 (203)
T ss_dssp HHHHHHTTCCEEEEETCCCSHHHHHHHHHHTC---CCSEEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHH
T ss_pred HHhhhccCCCeEEEeCCCCCHHHHHHHHHhcC---CCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHH
Confidence 34444555 46666654322233333333222 2457899999999999999766321111100 000 000 00
Q ss_pred cc---CCCCCCCc--EEEeCCCCCHHHHHHHHHHHHHh
Q psy17388 160 QP---YEAPKNPD--LILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 160 ~~---ye~~~~~~--~~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
.. ++....++ ++||++ .+++++.++|.+.+..
T Consensus 165 ~~~~~~~~~~~~~~vi~id~~-~~~e~v~~~i~~~l~~ 201 (203)
T 1ukz_A 165 TSMPVIEYFETKSKVVRVRCD-RSVEDVYKDVQDAIRD 201 (203)
T ss_dssp TTHHHHHHHHTTTCEEEEECS-SCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhcCcEEEEECC-CCHHHHHHHHHHHHhc
Confidence 00 00001223 357775 7999999999998865
No 67
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.42 E-value=2.8e-12 Score=105.13 Aligned_cols=158 Identities=10% Similarity=0.096 Sum_probs=91.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCC---CHHHHHHHHHHHHHHHHHHHhCCCeEE
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAF---SEEDRNENVRRAAECAKMFAECGFIAL 98 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~---~~~~~~~~~~~i~~~~~~~~~~g~~VI 98 (272)
+.+|+|+|++||||||+++.|+..+. ..+++++|.+.......... ........++.+...+..+...+..+|
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~~----g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i 77 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLD----NSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDLTVNFLLAQNDVV 77 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSS----SEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccC----CeEEEcccchhhhhccccccCccchhHHHHHHHHHHHHHHHHHhcCCcEE
Confidence 46899999999999999999987551 34778888775532211111 111112233334444555556676777
Q ss_pred EcCCCCcHHHHHHHHHHHH--hCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcc-ccccccccccCCCCCCCcEEEeCC
Q psy17388 99 CSFVSPTAAARDRAREIHR--NANLEFFEVFVNTPVEICEQRDVKGHYKKAREGK-IKSFTGVSQPYEAPKNPDLILETV 175 (272)
Q Consensus 99 ~d~~~~~~~~r~~~~~~~~--~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~-~~~~~~~~~~ye~~~~~~~~Idt~ 175 (272)
++.... ...++.++++++ ..+..+.+++|.+|++++.+|...|.....-... ...+..+...+ ....++|+|+
T Consensus 78 ld~~~~-~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~~ld~~~~~~~~~~~~~~---~~~~~ii~ts 153 (189)
T 2bdt_A 78 LDYIAF-PDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDEQMGERCLELVEEFESKG---IDERYFYNTS 153 (189)
T ss_dssp EESCCC-HHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC----CGGGGHHHHHHHHTT---CCTTSEEECS
T ss_pred EeeccC-HHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccccCCHHHHHHHHHHhhcC---CCccEEEeCC
Confidence 776432 334455555543 2233566799999999999999765321100000 00011111111 2346888988
Q ss_pred CC---CHHHHHHHHH
Q psy17388 176 NV---PVEKCANSVL 187 (272)
Q Consensus 176 ~~---~~ee~~~~I~ 187 (272)
.. ++++++++|+
T Consensus 154 h~~~~~~e~~~~~i~ 168 (189)
T 2bdt_A 154 HLQPTNLNDIVKNLK 168 (189)
T ss_dssp SSCGGGHHHHHHHHH
T ss_pred CCChhhHHHHHHHHh
Confidence 77 7888888887
No 68
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=99.41 E-value=9e-13 Score=124.79 Aligned_cols=123 Identities=18% Similarity=0.237 Sum_probs=87.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccccc---C-CCCHHHHH--HHHHHH----HHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINAN---L-AFSEEDRN--ENVRRA----AECAKM 89 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~---~-~~~~~~~~--~~~~~i----~~~~~~ 89 (272)
..+.+|+|+|+|||||||+|+.|++.|+..++++.+++.|.++..+... . .|...... ...+.+ ...+..
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~~~f~~~~~~~~~~re~~~~~~l~~~~~ 112 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQCALAALRDVKS 112 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccccccCcccHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999997777788889989887655322 1 12211111 111111 112222
Q ss_pred HH--hCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCC-HHHHHHhhhhh
Q psy17388 90 FA--ECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTP-VEICEQRDVKG 142 (272)
Q Consensus 90 ~~--~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~-~e~~~~Rl~~r 142 (272)
++ +.|..||+|+++.....|+.++++++..|..++.|++.|+ .+++.+|+.+|
T Consensus 113 ~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r 168 (520)
T 2axn_A 113 YLAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEV 168 (520)
T ss_dssp HHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHH
T ss_pred HHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhh
Confidence 33 5788999999999889999999988888877878888887 77777777544
No 69
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.41 E-value=4.6e-14 Score=113.69 Aligned_cols=151 Identities=17% Similarity=0.175 Sum_probs=82.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCC---HHHHHHHHHHH-HHHHHHHHhCCCe-
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFS---EEDRNENVRRA-AECAKMFAECGFI- 96 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~---~~~~~~~~~~i-~~~~~~~~~~g~~- 96 (272)
..+|+|+|+|||||||+|+.|+++| ++.++|.|.+...... .... .......++.+ ..+...+.+.+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l-----g~~~id~D~~~~~~~g-~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~ 80 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL-----KLEVLDTDMIISERVG-LSVREIFEELGEDNFRMFEKNLIDELKTLKTPH 80 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH-----TCCEEEHHHHHHHHHT-SCHHHHHHHTCHHHHHHHHHHHHHHHHTCSSCC
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh-----CCCEEEChHHHHHHhC-CCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCCE
Confidence 4589999999999999999999999 4556788876543221 1000 00011222222 2223334445555
Q ss_pred EEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh-hhhhhhccccccccc----cccCCCCCCCcEE
Q psy17388 97 ALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH-YKKAREGKIKSFTGV----SQPYEAPKNPDLI 171 (272)
Q Consensus 97 VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~-~~~~r~~~~~~~~~~----~~~ye~~~~~~~~ 171 (272)
|+..+... ... +. ++. ...+|||++|++++.+|+.+|. ..+........+... ...|. ..++++
T Consensus 81 Vi~~g~g~-~~~-~~----l~~---~~~vi~l~~~~e~~~~Rl~~r~~~~r~~~~~~~~~~~~~~~r~~~~~--~~a~~~ 149 (168)
T 1zuh_A 81 VISTGGGI-VMH-EN----LKG---LGTTFYLKMDFETLIKRLNQKEREKRPLLNNLTQAKELFEKRQALYE--KNASFI 149 (168)
T ss_dssp EEECCGGG-GGC-GG----GTT---SEEEEEEECCHHHHHHHHCC--------CCTTHHHHHHHHHHHHHHH--HTCSEE
T ss_pred EEECCCCE-ech-hH----Hhc---CCEEEEEECCHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHHHHH--HHCCEE
Confidence 66532111 011 11 222 3478999999999999996551 000000000111110 11121 236899
Q ss_pred EeCCCCCHHHHHHHHHHHH
Q psy17388 172 LETVNVPVEKCANSVLDMI 190 (272)
Q Consensus 172 Idt~~~~~ee~~~~I~~~L 190 (272)
||++. ++++++++|.+.|
T Consensus 150 Id~~~-~~e~~~~~I~~~l 167 (168)
T 1zuh_A 150 IDARG-GLNNSLKQVLQFI 167 (168)
T ss_dssp EEGGG-CHHHHHHHHHHC-
T ss_pred EECCC-CHHHHHHHHHHHh
Confidence 99987 9999999998765
No 70
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.40 E-value=2.7e-12 Score=105.93 Aligned_cols=71 Identities=8% Similarity=0.073 Sum_probs=44.6
Q ss_pred CceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCC----CC--CCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388 121 LEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYE----AP--KNPDLILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 121 ~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye----~~--~~~~~~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
.+..+|||++|++++.+|+.+|.+.............+...|+ .. ..++++||++. ++++++++|.+.+.+
T Consensus 124 ~~d~vi~L~~~~e~~~~Rl~~R~r~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Id~~~-~~~~v~~~I~~~l~~ 200 (205)
T 2jaq_A 124 SFDIVIYLRVSTKTAISRIKKRGRSEELLIGEEYWETLNKNYEEFYKQNVYDFPFFVVDAEL-DVKTQIELIMNKLNS 200 (205)
T ss_dssp CCSEEEEEECCHHHHHHHHHHHTCHHHHHSCHHHHHHHHHHHHHHHHHHTTTSCEEEEETTS-CHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHcCChhhhcCcHHHHHHHHHHHHHHHHHccccCcEEEEECCC-CHHHHHHHHHHHHHH
Confidence 3558899999999999999765321111000011111222222 11 34679999876 999999999998875
No 71
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.40 E-value=2e-13 Score=111.84 Aligned_cols=150 Identities=19% Similarity=0.228 Sum_probs=82.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH-HHHcCCCEEEecCcccccccc--ccC------CCC-HHHHHHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESY-LIAQGIPAYALDGDNLRNGIN--ANL------AFS-EEDRNENVRRAAECAKM 89 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~-L~~~g~~~~~ld~D~i~~~l~--~~~------~~~-~~~~~~~~~~i~~~~~~ 89 (272)
.++.+|+|+|+|||||||+|+.|++. + ++.++|.|.+..... ... .+- .......++.+. ..
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~-----g~~~id~d~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~---~~ 79 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAELD-----GFQHLEVGKLVKENHFYTEYDTELDTHIIEEKDEDRLLDFME---PI 79 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST-----TEEEEEHHHHHHHTTCSCC------CCCCCHHHHHHHHHHHH---HH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcC-----CCEEeeHHHHHHHhhhhhhHHHHhhhcccCCCCHHHHHHHHH---HH
Confidence 46789999999999999999999999 6 677888886543211 100 111 001111222221 22
Q ss_pred HHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhh-ccc-cc-ccc----ccccC
Q psy17388 90 FAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKARE-GKI-KS-FTG----VSQPY 162 (272)
Q Consensus 90 ~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~-~~~-~~-~~~----~~~~y 162 (272)
+...|..|+ +...+. . ++... ...+|||+||.+++.+|+.+|.+.+... ... .. +.. ....|
T Consensus 80 ~~~~g~~vi-~~~~~~-----~----~~~~~-~~~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~q~~~~l~~~~~~~y 148 (184)
T 1y63_A 80 MVSRGNHVV-DYHSSE-----L----FPERW-FHMVVVLHTSTEVLFERLTKRQYSEAKRAENMEAEIQCICEEEARDAY 148 (184)
T ss_dssp HTSSSEEEE-ECSCCT-----T----SCGGG-CSEEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHS
T ss_pred HhccCCEEE-eCchHh-----h----hhhcc-CCEEEEEECCHHHHHHHHHhCCCChhhhHhhHHHHHHHHHHHHHHHHh
Confidence 213443443 332220 1 11111 2268999999999999997763221110 000 00 111 11123
Q ss_pred CCCCCCcEEEeCCCCCHHHH---HHHHHHHHHh
Q psy17388 163 EAPKNPDLILETVNVPVEKC---ANSVLDMIAA 192 (272)
Q Consensus 163 e~~~~~~~~Idt~~~~~ee~---~~~I~~~L~~ 192 (272)
. ++++|++++.+++++ +++|++.+..
T Consensus 149 ~----~~~vi~~n~~~~~~~~~~v~~i~~~l~~ 177 (184)
T 1y63_A 149 E----DDIVLVRENDTLEQMAATVEEIRERVEV 177 (184)
T ss_dssp C----GGGEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred c----cCcEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 2 377888777899999 6666666653
No 72
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.39 E-value=6.3e-13 Score=111.78 Aligned_cols=118 Identities=13% Similarity=0.084 Sum_probs=66.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc-cccccCCCCHH-----------HHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN-GINANLAFSEE-----------DRNENVRRAAECA 87 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~-~l~~~~~~~~~-----------~~~~~~~~i~~~~ 87 (272)
.+|++|+|+|+|||||||+|+.|++.+ +..+++.|.+.. ....+..+... .+......+...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l-----~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l 76 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF-----HAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDEL 76 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH-----CCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc-----CceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHH
Confidence 457899999999999999999999999 567788765433 21111000000 0011111111111
Q ss_pred HHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCC-ceEEEEEeCCHHHHHHhhhhh
Q psy17388 88 KMFAECGFIALCSFVSPTAAARDRAREIHRNANL-EFFEVFVNTPVEICEQRDVKG 142 (272)
Q Consensus 88 ~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~-~~~~V~L~~~~e~~~~Rl~~r 142 (272)
......|..+|+|+..........+..++...|. +.++|||++|++++.+|+..|
T Consensus 77 ~~~~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r 132 (220)
T 1aky_A 77 TNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGR 132 (220)
T ss_dssp HHCGGGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTE
T ss_pred HhccccCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCC
Confidence 1011234456677532223334444444443333 347899999999999999655
No 73
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.39 E-value=1.8e-12 Score=108.47 Aligned_cols=114 Identities=14% Similarity=0.114 Sum_probs=66.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc-cccccCCCCHHHHHHHH--------HHHHHHHHHHH--
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN-GINANLAFSEEDRNENV--------RRAAECAKMFA-- 91 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~-~l~~~~~~~~~~~~~~~--------~~i~~~~~~~~-- 91 (272)
+.|+|+|+|||||||+|+.|++.+ ++.+++.|.+.. .+..+....... ...+ ..+.......+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~-----~~~~i~~d~~~r~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~l~~ 74 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEKY-----EIPHISTGDMFRAAIKNGTELGLKA-KSFMDQGNLVPDEVTIGIVHERLSK 74 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH-----CCCEEEHHHHHHHHHHTTCHHHHHH-HHHHHHTCCCCHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh-----CCcEeeHHHHHHHHHhcCCHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHhc
Confidence 368999999999999999999998 455677755432 222110000000 0000 00111122222
Q ss_pred -hCCCeEEEcCCCCcHHHHHHHHHHHHhCCCce-EEEEEeCCHHHHHHhhhhh
Q psy17388 92 -ECGFIALCSFVSPTAAARDRAREIHRNANLEF-FEVFVNTPVEICEQRDVKG 142 (272)
Q Consensus 92 -~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~-~~V~L~~~~e~~~~Rl~~r 142 (272)
..+..+|.++..........+...+...+..+ .+|||++|.+++.+|+.+|
T Consensus 75 ~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 127 (216)
T 3fb4_A 75 DDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGR 127 (216)
T ss_dssp GGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSE
T ss_pred ccCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence 23556777654333445555666555555433 7899999999999999766
No 74
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.39 E-value=2.3e-12 Score=108.41 Aligned_cols=111 Identities=14% Similarity=0.076 Sum_probs=62.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccc-ccccC-------------CCCHHHHHHHHHHHHH-
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNG-INANL-------------AFSEEDRNENVRRAAE- 85 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~-l~~~~-------------~~~~~~~~~~~~~i~~- 85 (272)
+|++|+|+|+|||||||+|+.|++.+ +..++|.|.+... ...+. .+.+. ......+.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l-----~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~--~~~~~~~~~~ 76 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY-----QLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPD--EIVVNMVKER 76 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH-----CCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCH--HHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-----CCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCH--HHHHHHHHHH
Confidence 56789999999999999999999999 5678887654322 11100 01100 111111111
Q ss_pred HHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388 86 CAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG 142 (272)
Q Consensus 86 ~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r 142 (272)
+.......+.+|+ |+..... +.+..+......+.++|||++|++++.+|+..|
T Consensus 77 ~~~~~~~~~~~vi-dg~~~~~---~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~r 129 (222)
T 1zak_A 77 LRQPDAQENGWLL-DGYPRSY---SQAMALETLEIRPDTFILLDVPDELLVERVVGR 129 (222)
T ss_dssp HHSHHHHHTCEEE-ESCCCSH---HHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTE
T ss_pred HhhccccCCcEEE-ECCCCCH---HHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcC
Confidence 1111122344555 5422211 222222222123457899999999999998655
No 75
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.38 E-value=2.9e-12 Score=108.22 Aligned_cols=114 Identities=13% Similarity=0.107 Sum_probs=67.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc-cccccccCCCCHHHHHHHH--------HHHHHHHHHHHhC
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL-RNGINANLAFSEEDRNENV--------RRAAECAKMFAEC 93 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i-~~~l~~~~~~~~~~~~~~~--------~~i~~~~~~~~~~ 93 (272)
++|+|+|+|||||||+|+.|++.+ +..+++.|.+ ++.+..+..+.... ...+ ..+..++...+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~l-----g~~~i~~dd~~r~~~~~~~~~g~~i-~~~~~~g~~~~~~~~~~~i~~~l~~ 74 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKY-----SLAHIESGGIFREHIGGGTELGKKA-KEFIDRGDLVPDDITIPMVLETLES 74 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH-----TCEEEEHHHHHHHHTTTTCHHHHHH-HHHHTTTCCCCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh-----CCeEEchHHHHHHHHHcCCHHHHHH-HHHHHcCCcCcHHHHHHHHHHHHhc
Confidence 479999999999999999999999 4566777554 33211110000000 0000 1112223333333
Q ss_pred --CCeEEEcCCCCcHHHHHHHHHHHHhCC-CceEEEEEeCCHHHHHHhhhhh
Q psy17388 94 --GFIALCSFVSPTAAARDRAREIHRNAN-LEFFEVFVNTPVEICEQRDVKG 142 (272)
Q Consensus 94 --g~~VI~d~~~~~~~~r~~~~~~~~~~g-~~~~~V~L~~~~e~~~~Rl~~r 142 (272)
|..||+|+..........+...+...+ .+..+|||++|++++.+|+.+|
T Consensus 75 ~~g~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 126 (223)
T 2xb4_A 75 KGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGR 126 (223)
T ss_dssp HCTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTB
T ss_pred ccCCeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcc
Confidence 777888853322234444444433333 3558899999999999999765
No 76
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.35 E-value=2.7e-12 Score=110.52 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=32.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR 62 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~ 62 (272)
.++.+|.|+|++||||||+++.|+++| +..++|.+.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~L-----g~~~~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESL-----NWRLLDSGAIY 62 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHT-----TCEEEEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhc-----CCCcCCCCcee
Confidence 456899999999999999999999999 56667766654
No 77
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.34 E-value=4.4e-12 Score=105.07 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=30.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
+|+|+|++||||||+|+.|++.+ ++.++|.|.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l-----g~~~~d~d~~~~ 38 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL-----GVPYLSSGLLYR 38 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-----TCCEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc-----CCceeccchHHH
Confidence 89999999999999999999999 466788887654
No 78
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.34 E-value=2.5e-12 Score=107.60 Aligned_cols=109 Identities=16% Similarity=0.161 Sum_probs=66.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc-ccccccC------------C-CCHHHHHHHHHHHHHHHH
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR-NGINANL------------A-FSEEDRNENVRRAAECAK 88 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~-~~l~~~~------------~-~~~~~~~~~~~~i~~~~~ 88 (272)
+.|+|+|+|||||||+|+.|++.+ ++.+++.|.+. +.+..+. + +... .. +..+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~-----~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~---~~---~~~~~~ 69 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEKY-----GIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPD---EV---TIGIVK 69 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS-----SCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCH---HH---HHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh-----CCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCH---HH---HHHHHH
Confidence 358999999999999999999988 55667775443 2221110 0 0000 01 111111
Q ss_pred HHH---hCCCeEEEcCCCCcHHHHHHHHHHHHhCCCce-EEEEEeCCHHHHHHhhhhh
Q psy17388 89 MFA---ECGFIALCSFVSPTAAARDRAREIHRNANLEF-FEVFVNTPVEICEQRDVKG 142 (272)
Q Consensus 89 ~~~---~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~-~~V~L~~~~e~~~~Rl~~r 142 (272)
..+ ..+..+|.++..........+...+...+..+ .+|||++|++++.+|+.+|
T Consensus 70 ~~l~~~~~~~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 127 (216)
T 3dl0_A 70 ERLGKDDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGR 127 (216)
T ss_dssp HHHTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTE
T ss_pred HHHhcccccCCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCC
Confidence 111 23556777754333445555656555555433 7899999999999999766
No 79
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.33 E-value=4.4e-12 Score=104.96 Aligned_cols=143 Identities=8% Similarity=0.119 Sum_probs=84.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc-----------cC---------------CCCHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA-----------NL---------------AFSEE 74 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~-----------~~---------------~~~~~ 74 (272)
.-.+|.|+|++||||||+|+.|++.+ ++.++|.|.+.+.+.. .. .|.+.
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l-----g~~vid~D~~~~~~~~~~~~~i~~~fG~~~~~~g~ldr~~L~~~vF~~~ 85 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY-----GAHVVNVDRIGHEVLEEVKEKLVELFGGSVLEDGKVNRKKLAGIVFESR 85 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH-----CCEEEEHHHHHHHHHHHTHHHHHHHHCGGGBSSSSBCHHHHHHHHTTCH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc-----CCEEEECcHHHHHHHHHHHHHHHHHhChhhcCCCCcCHHHHHHHHhCCH
Confidence 45789999999999999999999998 5677888877332210 00 12222
Q ss_pred HHHHHHHHHH-----HHH-HHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhh
Q psy17388 75 DRNENVRRAA-----ECA-KMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAR 148 (272)
Q Consensus 75 ~~~~~~~~i~-----~~~-~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r 148 (272)
....+...+. ... ..+...+..||.+....+.. .+... ...+||++||++++.+|+....
T Consensus 86 ~~~~~l~~i~hP~i~~~~~~~~~~~~~~vv~d~pll~e~---~~~~~------~d~vi~v~a~~e~r~~Rli~~q----- 151 (192)
T 2grj_A 86 ENLKKLELLVHPLMKKRVQEIINKTSGLIVIEAALLKRM---GLDQL------CDHVITVVASRETILKRNREAD----- 151 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECTTTTTT---TGGGG------CSEEEEEECCHHHHHHHCSSHH-----
T ss_pred HHHHHHHhhhCHHHHHHHHHHHHHcCCEEEEEEeceeec---ChHHh------CCEEEEEECCHHHHHHHHHHhc-----
Confidence 2222222221 111 11222355677765433211 11111 1267999999999999972110
Q ss_pred hccccccccccccCC-CCCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388 149 EGKIKSFTGVSQPYE-APKNPDLILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 149 ~~~~~~~~~~~~~ye-~~~~~~~~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
.. ..|+ ....+|++|+++ .++++..++|.+.+.+
T Consensus 152 ---~~------~~~~~~~~~AD~vI~n~-~~~~~l~~~v~~~~~~ 186 (192)
T 2grj_A 152 ---RR------LKFQEDIVPQGIVVANN-STLEDLEKKVEEVMKL 186 (192)
T ss_dssp ---HH------HTTCTTCCCCSEEEECS-SCHHHHHHHHHHHHHH
T ss_pred ---CC------chhhhHHhcCCEEEECC-CCHHHHHHHHHHHHHH
Confidence 00 0011 124678999986 6899999998887754
No 80
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.33 E-value=8.8e-12 Score=106.73 Aligned_cols=118 Identities=11% Similarity=0.078 Sum_probs=69.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc-ccccccCCCCHHHHHHHH--------HHHHHHHHH
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR-NGINANLAFSEEDRNENV--------RRAAECAKM 89 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~-~~l~~~~~~~~~~~~~~~--------~~i~~~~~~ 89 (272)
..+|++|+|+|+|||||||+|+.|++.+ ++.+++.|.+. .....+....... ...+ ..+......
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~-----g~~~is~~~~~r~~~~~~~~~g~~i-~~~~~~g~~~~~~~~~~~~~~ 99 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLKKSH-----CYCHLSTGDLLREAAEKKTELGLKI-KNIINEGKLVDDQMVLSLVDE 99 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHH-----CCEEEEHHHHHHHHTTSSSHHHHHH-HHHHHTTCCCCHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHh-----CCeEEecHHHHHHHHhccchHHHHH-HHHHhcCCCCcHHHHHHHHHH
Confidence 3578999999999999999999999999 56778775543 3222110000000 0000 001112222
Q ss_pred HH---hCCCeEEEcCCCCcHHHHHHHHHHHHhCCC-ceEEEEEeCCHHHHHHhhhhh
Q psy17388 90 FA---ECGFIALCSFVSPTAAARDRAREIHRNANL-EFFEVFVNTPVEICEQRDVKG 142 (272)
Q Consensus 90 ~~---~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~-~~~~V~L~~~~e~~~~Rl~~r 142 (272)
.+ ..+..+|.|...........+..++...+. +..+|+|++|++++.+|+.+|
T Consensus 100 ~l~~~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R 156 (243)
T 3tlx_A 100 KLKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGR 156 (243)
T ss_dssp HTTSGGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTE
T ss_pred HHhcccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcC
Confidence 22 225667777633333344445554444433 457899999999999999766
No 81
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.31 E-value=1.4e-11 Score=103.54 Aligned_cols=37 Identities=24% Similarity=0.285 Sum_probs=31.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
+.+|+|+|++||||||+++.|++.+ ++.++|.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~-----g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL-----QWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH-----TCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh-----CCCcccCcceee
Confidence 4689999999999999999999998 567788776543
No 82
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.31 E-value=3.7e-12 Score=109.51 Aligned_cols=166 Identities=17% Similarity=0.263 Sum_probs=90.0
Q ss_pred cCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHc-----CCCEEEecCccccccccc---------cCCCCHHHHHHHHHHH
Q psy17388 18 EGQSNICLLFPGLSGAGKTSISFQIESYLIAQ-----GIPAYALDGDNLRNGINA---------NLAFSEEDRNENVRRA 83 (272)
Q Consensus 18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~-----g~~~~~ld~D~i~~~l~~---------~~~~~~~~~~~~~~~i 83 (272)
.+.++.+|.|+|+|||||||+|+.|++.++.. +..+.+++.|.+...+.. ...|...... ....+
T Consensus 18 ~~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~~~~~g~~~f~~~~~~-d~~~l 96 (252)
T 1uj2_A 18 NGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAF-DNELI 96 (252)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGB-CHHHH
T ss_pred cCCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChhhhhhhccCCCCCCCcchh-hHHHH
Confidence 33567899999999999999999999988321 234568899988653321 1223221110 00111
Q ss_pred HHHHHHHHh------------------------CCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhh
Q psy17388 84 AECAKMFAE------------------------CGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRD 139 (272)
Q Consensus 84 ~~~~~~~~~------------------------~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl 139 (272)
.+....+.. ....||+++...+. ...+...+ ..+|||++|.+++.+|+
T Consensus 97 ~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~--~~~~~~~~------d~vi~l~~~~e~~~~R~ 168 (252)
T 1uj2_A 97 LKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFY--SQEVRDLF------QMKLFVDTDADTRLSRR 168 (252)
T ss_dssp HHHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTS--SHHHHHHC------SEEEEEECCHHHHHHHH
T ss_pred HHHHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeecccc--CHHHHHhc------CeeEEEeCCHHHHHHHH
Confidence 122222221 23466666543321 11222222 26899999999999998
Q ss_pred hhhhh-hhhhh-ccc-ccccc-ccccCC----C-CCCCcEEE----eCCCCCHHHHHHHHHHHHHhC
Q psy17388 140 VKGHY-KKARE-GKI-KSFTG-VSQPYE----A-PKNPDLIL----ETVNVPVEKCANSVLDMIAAK 193 (272)
Q Consensus 140 ~~r~~-~~~r~-~~~-~~~~~-~~~~ye----~-~~~~~~~I----dt~~~~~ee~~~~I~~~L~~~ 193 (272)
..|.. .+... ..+ ..+.. ....|+ + ...++++| |+ +.+++++.++|.+.+...
T Consensus 169 ~~R~~~~rg~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~id~-~~s~e~v~~~I~~~l~~~ 234 (252)
T 1uj2_A 169 VLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADN-LVAINLIVQHIQDILNGG 234 (252)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEETGGGC-HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhhhCCCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEEecCCCC-hhHHHHHHHHHHHHHccc
Confidence 76521 00000 000 00110 000011 1 13467888 77 678999999999988753
No 83
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.30 E-value=1.1e-11 Score=105.32 Aligned_cols=111 Identities=14% Similarity=0.087 Sum_probs=66.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccc-cccc--------------CCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNG-INAN--------------LAFSEEDRNENVRRAA 84 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~-l~~~--------------~~~~~~~~~~~~~~i~ 84 (272)
.++++|+|+|+|||||||+|+.|++.+ ++.+++.|++.+. +..+ .....+ . +.
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l-----~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~----~---~~ 81 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNF-----CVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDE----M---VL 81 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH-----TCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHH----H---HH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh-----CCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHH----H---HH
Confidence 356789999999999999999999999 5667887654321 1110 001110 0 11
Q ss_pred HHHHHHHh---CCCeEEEcCCCCcHHHHHHHHHHHHhC-CCceEEEEEeCCHHHHHHhhhhh
Q psy17388 85 ECAKMFAE---CGFIALCSFVSPTAAARDRAREIHRNA-NLEFFEVFVNTPVEICEQRDVKG 142 (272)
Q Consensus 85 ~~~~~~~~---~g~~VI~d~~~~~~~~r~~~~~~~~~~-g~~~~~V~L~~~~e~~~~Rl~~r 142 (272)
.++...+. .+..+|+|+..........+..++... ..+.++|||++|++++.+|+..|
T Consensus 82 ~~i~~~l~~~~~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R 143 (233)
T 1ak2_A 82 ELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGR 143 (233)
T ss_dssp HHHHHHHTSGGGTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTC
T ss_pred HHHHHHHhcccccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence 12222222 233466665322223334444444322 23568899999999999999765
No 84
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.28 E-value=4.3e-12 Score=106.31 Aligned_cols=37 Identities=24% Similarity=0.352 Sum_probs=31.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR 62 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~ 62 (272)
+|.+|+|+|++||||||+++.|++.+ ++.++|.|.+.
T Consensus 2 ~~~~i~i~G~~gsGkst~~~~l~~~~-----g~~~~~~d~~~ 38 (219)
T 2h92_A 2 KAINIALDGPAAAGKSTIAKRVASEL-----SMIYVDTGAMY 38 (219)
T ss_dssp -CCCEEEECCTTSSHHHHHHHHHHHT-----TCEEEEHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc-----CCceecCChHH
Confidence 46789999999999999999999998 56678877664
No 85
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=99.28 E-value=1.5e-11 Score=103.48 Aligned_cols=166 Identities=13% Similarity=0.087 Sum_probs=92.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC---cc-----ccccccccC-CCCHHHHHHHH--HH--HHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG---DN-----LRNGINANL-AFSEEDRNENV--RR--AAECA 87 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~---D~-----i~~~l~~~~-~~~~~~~~~~~--~~--i~~~~ 87 (272)
+|.+|+|.|++||||||+++.|++.|.. ++..+.. +. ++..+.... .+++....-.+ .+ ..+.+
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~---~~~~~~ep~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~~~I 80 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP---NCKLLKFPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVDKI 80 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS---SEEEEESSCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc---cceEEEecCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999942 2322221 10 111111111 12221110000 01 12345
Q ss_pred HHHHhCCCeEEEcCCCCcH-----------HHHHHHHHHHHhCCCceEEEEE-eCCHHHHHHhhhhhhhhhhhhcccccc
Q psy17388 88 KMFAECGFIALCSFVSPTA-----------AARDRAREIHRNANLEFFEVFV-NTPVEICEQRDVKGHYKKAREGKIKSF 155 (272)
Q Consensus 88 ~~~~~~g~~VI~d~~~~~~-----------~~r~~~~~~~~~~g~~~~~V~L-~~~~e~~~~Rl~~r~~~~~r~~~~~~~ 155 (272)
+..++.|.+||+|...... ...+++..+......|.++||| ++|++++.+|+.++. .|-.....+
T Consensus 81 ~paL~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~~---dr~E~~~f~ 157 (216)
T 3tmk_A 81 KKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGD---ERYETVKFQ 157 (216)
T ss_dssp HHHHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSSC---CTTCCHHHH
T ss_pred HHHHHcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccCc---ccccHHHHH
Confidence 5667889999998532110 0112333322222358899999 999999999985321 111111112
Q ss_pred ccccccCCC--------CCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388 156 TGVSQPYEA--------PKNPDLILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 156 ~~~~~~ye~--------~~~~~~~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
..++..|.. ....-++||+++.+++++.++|.+.+.+
T Consensus 158 ~rvr~~Y~~la~~~~~~~~~~~~vID~a~~s~eeV~~~I~~~i~~ 202 (216)
T 3tmk_A 158 EKVKQTFMKLLDKEIRKGDESITIVDVTNKGIQEVEALIWQIVEP 202 (216)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCCCEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 223333321 1123477885678999999999988875
No 86
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.27 E-value=2.7e-13 Score=112.89 Aligned_cols=164 Identities=13% Similarity=0.139 Sum_probs=84.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHH-c-----------------CCCEEEecCccccccccccC-CCCHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIA-Q-----------------GIPAYALDGDNLRNGINANL-AFSEEDRNENV 80 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~-~-----------------g~~~~~ld~D~i~~~l~~~~-~~~~~~~~~~~ 80 (272)
.+|.+|+|+|+|||||||+++.|++.++. . |....+++.|.+......+. ..........+
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFY 89 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCee
Confidence 36789999999999999999999998731 0 00112222222211110000 00000000000
Q ss_pred HHHHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCC-CceEEEEEe-CCHHHHHHhhhhhhhhhhhhccccc-ccc
Q psy17388 81 RRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNAN-LEFFEVFVN-TPVEICEQRDVKGHYKKAREGKIKS-FTG 157 (272)
Q Consensus 81 ~~i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g-~~~~~V~L~-~~~e~~~~Rl~~r~~~~~r~~~~~~-~~~ 157 (272)
......+...++.|..||++... .....++ ...+ ...++|||+ +|.+++.+|+.+|.... ...+.. +..
T Consensus 90 ~~~~~~i~~~l~~g~~vi~d~~~---~~~~~l~---~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~~~--~~~i~~rl~~ 161 (204)
T 2qor_A 90 GTLKSEYDLAVGEGKICLFEMNI---NGVKQLK---ESKHIQDGIYIFVKPPSIDILLGRLKNRNTEK--PEEINKRMQE 161 (204)
T ss_dssp EEEHHHHHHHHHTTCEEEEECCH---HHHHHHH---HCSSCSCCEEEEEECSCHHHHHHHHHTCTTSC--HHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCeEEEEECH---HHHHHHH---HhcCCCCeEEEEEcCCCHHHHHHHHHHcCCCC--HHHHHHHHHH
Confidence 00012334456688888887421 1122222 2221 134789998 99999999997653210 001110 111
Q ss_pred ccccCC--CCCCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388 158 VSQPYE--APKNPDLILETVNVPVEKCANSVLDMIAAK 193 (272)
Q Consensus 158 ~~~~ye--~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~ 193 (272)
.+..+. ....++++|+++ ++++++++|.+.|...
T Consensus 162 ~~~~~~~~~~~~~d~vi~n~--~~e~~~~~i~~~i~~~ 197 (204)
T 2qor_A 162 LTREMDEADKVGFNYFIVND--DLARTYAELREYLLGS 197 (204)
T ss_dssp HHHHHHHHHHHTCSEEEECS--SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccCcEEEECc--CHHHHHHHHHHHHHHH
Confidence 111111 012457778775 8999999999998753
No 87
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.27 E-value=1.5e-11 Score=101.64 Aligned_cols=163 Identities=11% Similarity=0.098 Sum_probs=85.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc--------ccccccccCCCCHHHHHHHH---HHH--HHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN--------LRNGINANLAFSEEDRNENV---RRA--AECA 87 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~--------i~~~l~~~~~~~~~~~~~~~---~~i--~~~~ 87 (272)
+|++|+|+|+|||||||+++.|++.+ .|+++..++... ++..+.....+..... ..+ .+. ...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~-~~l~~~~r~~~~~~i 79 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI--PANTIKYLNFPQRSTVTGKMIDDYLTRKKTYNDHIV-NLLFCANRWEFASFI 79 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS--CGGGEEEEESSCTTSHHHHHHHHHHTSSCCCCHHHH-HHHHHHHHHTTHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH--CCCceEEEecCCCCCcHHHHHHHHHhcCCCCCHHHH-HHHHHHHHHHHHHHH
Confidence 57899999999999999999999987 234555444211 0111111112332211 110 010 1223
Q ss_pred HHHHhCCCeEEEcCCCCcH--------HHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcccccccccc
Q psy17388 88 KMFAECGFIALCSFVSPTA--------AARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVS 159 (272)
Q Consensus 88 ~~~~~~g~~VI~d~~~~~~--------~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~ 159 (272)
...+..|..||+|...... ...+.+..+......+..+|||++|++++.+ +|. ..+.........+.
T Consensus 80 ~~~l~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~---~R~--~d~~e~~~~~~rl~ 154 (204)
T 2v54_A 80 QEQLEQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSKEINR---NVG--EEIYEDVTFQQKVL 154 (204)
T ss_dssp HHHHHTTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCCHHHHTT---CCS--SSTTCCSHHHHHHH
T ss_pred HHHHHCCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCCHHHHHh---hcC--cccccHHHHHHHHH
Confidence 3445678888887532100 0022333332222235678999999999987 121 01100000111122
Q ss_pred ccCCC----CCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388 160 QPYEA----PKNPDLILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 160 ~~ye~----~~~~~~~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
..|.. .....++||+ +.+++++.++|.+.+.+
T Consensus 155 ~~y~~~~~~~~~~~~~Id~-~~~~~~v~~~i~~~l~~ 190 (204)
T 2v54_A 155 QEYKKMIEEGDIHWQIISS-EFEEDVKKELIKNIVIE 190 (204)
T ss_dssp HHHHHHHTTCSSCEEEECT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcEEEEEC-CCCHHHHHHHHHHHHHH
Confidence 23321 1123367776 57999999999988865
No 88
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.27 E-value=1.5e-11 Score=100.61 Aligned_cols=166 Identities=13% Similarity=0.158 Sum_probs=96.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc--cCCCCHHHHH---HHHHHHHHHHHHHHhCC
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA--NLAFSEEDRN---ENVRRAAECAKMFAECG 94 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~--~~~~~~~~~~---~~~~~i~~~~~~~~~~g 94 (272)
.+|.+|+|+|+|||||||+++.|+..+ +.+.+++++|.+...... ..++..+... ...+.+...+..+...|
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~---~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~ 83 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLP---GVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAGRYAKEG 83 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCS---SSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcc---CCCeEEEcccchhhhhhcccccCCccchhhhhHHHHHHHHHHHHHHhccC
Confidence 467899999999999999999999874 556778999877543221 1223222111 11222222333344566
Q ss_pred CeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCCC-CCCcEEEe
Q psy17388 95 FIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAP-KNPDLILE 173 (272)
Q Consensus 95 ~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~-~~~~~~Id 173 (272)
..++.+..... ..+..+. ..+.++..+++.++.+++.+|...|..... ........+...+... ..++++|+
T Consensus 84 ~~~~~~~~~~~-~~l~~~~----~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--ld~~~~~~~~~~~~~l~~~~~~~i~ 156 (191)
T 1zp6_A 84 YFVILDGVVRP-DWLPAFT----ALARPLHYIVLRTTAAEAIERCLDRGGDSL--SDPLVVADLHSQFADLGAFEHHVLP 156 (191)
T ss_dssp CEEEECSCCCT-TTTHHHH----TTCSCEEEEEEECCHHHHHHHHHTTCTTSC--CCHHHHHHHHHHTTCCGGGGGGEEE
T ss_pred CeEEEeccCcH-HHHHHHH----hcCCCeEEEEecCCHHHHHHHHHhcCCCcc--CCHHHHHHHHHHHhccCcccccEEE
Confidence 66666653221 1112221 113355779999999999999865421000 0000011111112211 12357899
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC
Q psy17388 174 TVNVPVEKCANSVLDMIAAKGL 195 (272)
Q Consensus 174 t~~~~~ee~~~~I~~~L~~~~~ 195 (272)
|++.++++++++|.+.+....+
T Consensus 157 t~~~~~~~~~~~i~~~l~~~~~ 178 (191)
T 1zp6_A 157 VSGKDTDQALQSAINALQSGRF 178 (191)
T ss_dssp CTTCCTTTTTTTTHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHHHhhhh
Confidence 9888999999999999987644
No 89
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.26 E-value=1.7e-11 Score=107.31 Aligned_cols=152 Identities=16% Similarity=0.140 Sum_probs=83.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc---------------cc----C-----------
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN---------------AN----L----------- 69 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~---------------~~----~----------- 69 (272)
.++.+|+|+|+|||||||+|+.|+ .+ ++.++|.|.+...+. .. .
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La-~l-----g~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~ 146 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK-NL-----GAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSR 146 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH-HH-----TCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH-HC-----CCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHH
Confidence 357899999999999999999999 56 456678776521100 00 0
Q ss_pred CCCHHHHHHHHHH---------HHHHHHHHHhCC-CeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhh
Q psy17388 70 AFSEEDRNENVRR---------AAECAKMFAECG-FIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRD 139 (272)
Q Consensus 70 ~~~~~~~~~~~~~---------i~~~~~~~~~~g-~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl 139 (272)
.|.......++.. +......+...+ .+||+++...... .+. .. ...+|||+||++++.+|+
T Consensus 147 vf~~~~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~~---~~~---~~---~d~vI~l~a~~ev~~~Rl 217 (281)
T 2f6r_A 147 VFGNKKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEA---GWQ---SM---VHEVWTVVIPETEAVRRI 217 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTTT---TGG---GG---CSEEEEEECCHHHHHHHH
T ss_pred HhCCHHHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhhcc---chH---Hh---CCEEEEEcCCHHHHHHHH
Confidence 0221111111111 111222222333 4677776433211 111 11 237899999999999999
Q ss_pred hhhhhhhhhhcccccc-ccccccCC---CCCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388 140 VKGHYKKAREGKIKSF-TGVSQPYE---APKNPDLILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 140 ~~r~~~~~r~~~~~~~-~~~~~~ye---~~~~~~~~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
.+|.. +. .+.+ ..+..++. ....++++||++. +++++.++|.+.+.+
T Consensus 218 ~~R~g---~s--~e~~~~ri~~q~~~~~~~~~AD~vIdn~~-s~eel~~~I~~~l~~ 268 (281)
T 2f6r_A 218 VERDG---LS--EAAAQSRLQSQMSGQQLVEQSNVVLSTLW-ESHVTQSQVEKAWNL 268 (281)
T ss_dssp HHHHC---CC--HHHHHHHHHTSCCHHHHHHTCSEEEECSS-CHHHHHHHHHHHHHH
T ss_pred HHcCC---CC--HHHHHHHHHHcCChHhhHhhCCEEEECCC-CHHHHHHHHHHHHHH
Confidence 66520 00 0000 01111111 0124679999874 999999999888764
No 90
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=99.25 E-value=4.3e-11 Score=100.06 Aligned_cols=114 Identities=15% Similarity=0.128 Sum_probs=68.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC-ccccccccccCCCCHHHHHHHHH--------HHHHHHHHHHhC
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG-DNLRNGINANLAFSEEDRNENVR--------RAAECAKMFAEC 93 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~-D~i~~~l~~~~~~~~~~~~~~~~--------~i~~~~~~~~~~ 93 (272)
++|+|.|+|||||+|+|+.|++.+ ++.++++ |.+|+.+..+....... ...+. -+..+....+..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~-----g~~~istGdllR~~i~~~t~lg~~~-~~~~~~G~lvpd~iv~~lv~~~l~~ 74 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEK-----GFVHISTGDILREAVQKGTPLGKKA-KEYMERGELVPDDLIIALIEEVFPK 74 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH-----CCEEEEHHHHHHHHHHHTCHHHHHH-HHHHHHTCCCCHHHHHHHHHHHCCS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-----CCeEEcHHHHHHHHHHhcChhhhhH-HHHHhcCCcCCHHHHHHHHHHhhcc
Confidence 579999999999999999999999 6778885 44454332211100000 00000 112222333333
Q ss_pred CCeEEEcCCCCcHHHHHHHHHHHHhCCC-ceEEEEEeCCHHHHHHhhhhh
Q psy17388 94 GFIALCSFVSPTAAARDRAREIHRNANL-EFFEVFVNTPVEICEQRDVKG 142 (272)
Q Consensus 94 g~~VI~d~~~~~~~~r~~~~~~~~~~g~-~~~~V~L~~~~e~~~~Rl~~r 142 (272)
...+|.|+.--.....+.+...+...+. ...+|+|++|.+++.+|+..|
T Consensus 75 ~~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R 124 (206)
T 3sr0_A 75 HGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGR 124 (206)
T ss_dssp SSCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTE
T ss_pred CCceEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCC
Confidence 3346666433333444555555555554 347899999999999999766
No 91
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.25 E-value=6e-11 Score=100.84 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=33.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR 62 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~ 62 (272)
.++.+|.|+|++||||||+++.|++.+ ++.++|.|.+.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l-----g~~~~d~d~~~ 51 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF-----GFTYLDTGAMY 51 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH-----CCEEEEHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc-----CCceecCCCee
Confidence 677899999999999999999999999 56678877664
No 92
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.23 E-value=4.3e-12 Score=106.38 Aligned_cols=151 Identities=10% Similarity=0.106 Sum_probs=81.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc-c-------------------cCCCCH-------
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN-A-------------------NLAFSE------- 73 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~-~-------------------~~~~~~------- 73 (272)
++.+|+|+|++||||||+++.|++ + +..++|.|.+...+. . +-.+..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-l-----g~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~ 76 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-L-----GINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERI 76 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-T-----TCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-c-----CCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHH
Confidence 468999999999999999999998 6 456778776532111 0 000111
Q ss_pred ---HHHHHHHHHHH-----H-HHHHHHh-CCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh
Q psy17388 74 ---EDRNENVRRAA-----E-CAKMFAE-CGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH 143 (272)
Q Consensus 74 ---~~~~~~~~~i~-----~-~~~~~~~-~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~ 143 (272)
.++..++..+. . ....+.. .+..++.+....... . + ... +..+|||++|++++.+|+.+|.
T Consensus 77 f~~~~~~~~l~~~~~p~v~~~~~~~~~~~~~~~vi~~~~~l~~~--~-~---~~~---~d~vi~l~~~~e~~~~Rl~~R~ 147 (218)
T 1vht_A 77 FANPEEKNWLNALLHPLIQQETQHQIQQATSPYVLWVVPLLVEN--S-L---YKK---ANRVLVVDVSPETQLKRTMQRD 147 (218)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEECTTTTTT--T-G---GGG---CSEEEEEECCHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHhHCHHHHHHHHHHHHhcCCCEEEEEeeeeecc--C-c---ccc---CCEEEEEECCHHHHHHHHHHcC
Confidence 11111111110 0 0111122 344555554221111 0 1 111 3378999999999999996552
Q ss_pred -hhhhhhcccccccccccc---CCCCCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388 144 -YKKAREGKIKSFTGVSQP---YEAPKNPDLILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 144 -~~~~r~~~~~~~~~~~~~---ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
... ..+.. .+..+ ++....++++||++. +++++.++|.+.+..
T Consensus 148 ~~~~---~~~~~--~~~~~~~~~~~~~~ad~vId~~~-~~~~~~~~I~~~l~~ 194 (218)
T 1vht_A 148 DVTR---EHVEQ--ILAAQATREARLAVADDVIDNNG-APDAIASDVARLHAH 194 (218)
T ss_dssp TCCH---HHHHH--HHHHSCCHHHHHHHCSEEEECSS-CTTSHHHHHHHHHHH
T ss_pred CCCH---HHHHH--HHHhcCChHHHHHhCCEEEECCC-CHHHHHHHHHHHHHH
Confidence 100 00000 01111 111123579999876 999999999888764
No 93
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.22 E-value=7.2e-12 Score=104.04 Aligned_cols=149 Identities=15% Similarity=0.103 Sum_probs=77.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc--------------ccCCCCH---------------
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN--------------ANLAFSE--------------- 73 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~--------------~~~~~~~--------------- 73 (272)
.+|.|+|++||||||+++.|+. + | ..++|.|.+.+.+. ....+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-l---g--~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~ 76 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-L---G--VPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFN 76 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-T---T--CCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH-C---C--CcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhC
Confidence 5899999999999999999987 5 4 55678877643211 0001110
Q ss_pred -HHHHHHHHHHH-----H-HHHHHHh-CCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh-h
Q psy17388 74 -EDRNENVRRAA-----E-CAKMFAE-CGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH-Y 144 (272)
Q Consensus 74 -~~~~~~~~~i~-----~-~~~~~~~-~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~-~ 144 (272)
.........+. . +...+.. .+..||.+....... . + .+. ...+|||++|++++.+|+.+|. .
T Consensus 77 ~~~~~~~l~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~--~-~---~~~---~d~vi~l~~~~e~~~~Rl~~R~~~ 147 (206)
T 1jjv_A 77 HDEDKLWLNNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIEN--K-L---TAL---CDRILVVDVSPQTQLARSAQRDNN 147 (206)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTT--T-C---GGG---CSEEEEEECCHHHHHHHHC-----
T ss_pred CHHHHHHHHhccCHHHHHHHHHHHHhcCCCEEEEEechhhhc--C-c---Hhh---CCEEEEEECCHHHHHHHHHHcCCC
Confidence 00000111110 0 1111211 244666554322111 0 1 111 1268999999999999997652 1
Q ss_pred hhhhhccccccccccccCC---CCCCCcEEEeCCCCCHH----HHHHHHHHHHHh
Q psy17388 145 KKAREGKIKSFTGVSQPYE---APKNPDLILETVNVPVE----KCANSVLDMIAA 192 (272)
Q Consensus 145 ~~~r~~~~~~~~~~~~~ye---~~~~~~~~Idt~~~~~e----e~~~~I~~~L~~ 192 (272)
.. ..+.. .+..++. ....++++||+++ +++ ++.++|.+.+..
T Consensus 148 ~~---e~~~~--r~~~q~~~~~~~~~ad~vIdn~~-~~~~~~~~~~~~i~~~~~~ 196 (206)
T 1jjv_A 148 NF---EQIQR--IMNSQVSQQERLKWADDVINNDA-ELAQNLPHLQQKVLELHQF 196 (206)
T ss_dssp CH---HHHHH--HHHHSCCHHHHHHHCSEEEECCS-CHHHHHHHHHHHHHHHHHH
T ss_pred CH---HHHHH--HHHhcCChHHHHHhCCEEEECCC-CccccHHHHHHHHHHHHHH
Confidence 00 00000 0111111 0124679999987 999 888888887753
No 94
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=99.17 E-value=4.6e-12 Score=109.54 Aligned_cols=71 Identities=10% Similarity=0.102 Sum_probs=43.6
Q ss_pred CceEEEEEeCCHHHHHHhhhhhhhhhhhhcccccccc-------------ccccCCCC-CCCcEEEeCCCCCHHHHHHHH
Q psy17388 121 LEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTG-------------VSQPYEAP-KNPDLILETVNVPVEKCANSV 186 (272)
Q Consensus 121 ~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~-------------~~~~ye~~-~~~~~~Idt~~~~~ee~~~~I 186 (272)
.+.++|||++|++++.+|+.+|.+...+......+.. ++..|... ..+.++||++. +++++.++|
T Consensus 174 ~pd~vi~L~~~~e~~~~Ri~~R~r~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~~~~~~Id~~~-~~eev~~~I 252 (263)
T 1p5z_B 174 ELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNE-DFKDKYESL 252 (263)
T ss_dssp CCSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGGSCEEEEECCS-CHHHHHHHH
T ss_pred CCCeEEEEECCHHHHHHHHHhcCCccccCccHHHHHHHHHHHHHHHhhccchhhhhhhccCCEEEEECCC-CHHHHHHHH
Confidence 3668999999999999999765321111000000111 22233211 13467888865 999999999
Q ss_pred HHHHHh
Q psy17388 187 LDMIAA 192 (272)
Q Consensus 187 ~~~L~~ 192 (272)
.+.|..
T Consensus 253 ~~~l~~ 258 (263)
T 1p5z_B 253 VEKVKE 258 (263)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998864
No 95
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.17 E-value=2.4e-11 Score=100.60 Aligned_cols=65 Identities=15% Similarity=0.241 Sum_probs=42.5
Q ss_pred EEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCC---CCCCCcEEEeCCCCCHHHHHHHHHHHHHhCC
Q psy17388 124 FEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYE---APKNPDLILETVNVPVEKCANSVLDMIAAKG 194 (272)
Q Consensus 124 ~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye---~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~~ 194 (272)
.+|||+||++++.+|+.+|..... .+ ...+..++. ....++++||++ .+++++.++|.+.+.+..
T Consensus 126 ~~i~l~~~~e~~~~Rl~~R~~~~~---~~--~~~~~~~~~~~~~~~~ad~vId~~-~~~~~~~~~i~~~l~~~~ 193 (204)
T 2if2_A 126 KLIVVYAPYEVCKERAIKRGMSEE---DF--ERRWKKQMPIEEKVKYADYVIDNS-GSIEETYKQVKKVYEELT 193 (204)
T ss_dssp EEEEECCCHHHHHHHHHHTCCCHH---HH--HHHHTTSCCHHHHGGGCSEECCCS-SCHHHHHHHHHHHHHTTC
T ss_pred EEEEEECCHHHHHHHHHHcCCCHH---HH--HHHHHhCCChhHHHhcCCEEEECC-CCHHHHHHHHHHHHHHHh
Confidence 789999999999999976521110 00 011122221 112457899986 699999999999987643
No 96
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.15 E-value=1.5e-11 Score=101.37 Aligned_cols=152 Identities=16% Similarity=0.209 Sum_probs=83.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccccc--------C-------C----------CCHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINAN--------L-------A----------FSEE 74 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~--------~-------~----------~~~~ 74 (272)
.++.+|.|+|++||||||+|+.|++. | +.++|.|.+......+ . . |...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~----g--~~~id~d~~~~~~~~~~~~~i~~~~~~~~~~g~i~~~~l~~~~~~~~ 79 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW----G--YPVLDLDALAARARENKEEELKRLFPEAVVGGRLDRRALARLVFSDP 79 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT----T--CCEEEHHHHHHHHHHHTHHHHHHHCGGGEETTEECHHHHHHHHTTSH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC----C--CEEEcccHHHHHhcCChHHHHHHHHHHHHhCCCcCHHHHHHHHhCCH
Confidence 56789999999999999999999985 3 4567777653211100 0 0 1100
Q ss_pred HHHHHHHHHH------HHHHHHHhC-CCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh-hhh
Q psy17388 75 DRNENVRRAA------ECAKMFAEC-GFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH-YKK 146 (272)
Q Consensus 75 ~~~~~~~~i~------~~~~~~~~~-g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~-~~~ 146 (272)
....++..+. ......... +..||++....... .+ ... ...+|||++|++++.+|+.+|. ...
T Consensus 80 ~~~~~l~~~~~~~i~~~~i~~~~~~g~~~vi~d~~~l~~~---~~---~~~---~d~~i~l~~~~e~~~~R~~~R~~~~~ 150 (203)
T 1uf9_A 80 ERLKALEAVVHPEVRRLLMEELSRLEAPLVFLEIPLLFEK---GW---EGR---LHGTLLVAAPLEERVRRVMARSGLSR 150 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEECTTTTTT---TC---GGG---SSEEEEECCCHHHHHHHHHTTTCCTT
T ss_pred HHHHHHHHHhChHHHHHHHHHhhhcCCCEEEEEecceecc---Cc---hhh---CCEEEEEECCHHHHHHHHHHcCCCCH
Confidence 0001111110 111112233 46777764322110 11 111 2378999999999999986551 110
Q ss_pred hhhccccccccccccCCC---CCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388 147 AREGKIKSFTGVSQPYEA---PKNPDLILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 147 ~r~~~~~~~~~~~~~ye~---~~~~~~~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
. .+ ...+..++.. ...++++||++. ++++++++|.+.+..
T Consensus 151 ~---~~--~~~i~~~~~~~~~~~~ad~vId~~~-~~~~~~~~i~~~~~~ 193 (203)
T 1uf9_A 151 E---EV--LARERAQMPEEEKRKRATWVLENTG-SLEDLERALKAVLAE 193 (203)
T ss_dssp H---HH--HHHHTTSCCHHHHHHHCSEEECCSS-HHHHHHHHHHHHHHS
T ss_pred H---HH--HHHHHHCCChhHHHHhCCEEEECCC-CHHHHHHHHHHHHHH
Confidence 0 00 0112222211 124578999876 999999999998874
No 97
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.14 E-value=1.8e-10 Score=96.32 Aligned_cols=151 Identities=14% Similarity=0.128 Sum_probs=83.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc-c-------------cCCC----------------
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN-A-------------NLAF---------------- 71 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~-~-------------~~~~---------------- 71 (272)
..-|.|+|.+||||||+++.|++ + ++.++|.|.+.+.+. . ...+
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~-~-----g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF 82 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAA-R-----GASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIF 82 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH-T-----TCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHH-C-----CCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHh
Confidence 45799999999999999999998 6 566788887543211 0 0011
Q ss_pred CHHHHHHHHHHHH------HHHHHHHhC-CCeEEEcCCCCcH-HHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh
Q psy17388 72 SEEDRNENVRRAA------ECAKMFAEC-GFIALCSFVSPTA-AARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH 143 (272)
Q Consensus 72 ~~~~~~~~~~~i~------~~~~~~~~~-g~~VI~d~~~~~~-~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~ 143 (272)
.+.....++..+. .+.+.+.+. +..||.+...-+. .. +...+ ..+|+++||++++.+|+.+|.
T Consensus 83 ~d~~~~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~pLL~E~~~---~~~~~------D~vi~V~ap~e~r~~Rl~~Rd 153 (210)
T 4i1u_A 83 SDEDARRRLEAITHPLIRAETEREARDAQGPYVIFVVPLLVESRN---WKARC------DRVLVVDCPVDTQIARVMQRN 153 (210)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSEEEECTTCTTCHH---HHHHC------SEEEEEECCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhHHHHHHHHHHHHhcCCCEEEEEEecccccCC---ccccC------CeEEEEECCHHHHHHHHHhcC
Confidence 1111122222221 122222233 3356666533322 11 22222 278999999999999997652
Q ss_pred -hhhhhhccccccccccccCC---CCCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388 144 -YKKAREGKIKSFTGVSQPYE---APKNPDLILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 144 -~~~~r~~~~~~~~~~~~~ye---~~~~~~~~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
..... .. ..+..+.. ....++++|+++..++++..++|.+.+..
T Consensus 154 g~s~ee---a~--~ri~~Q~~~eek~~~AD~VIdN~~gsle~l~~qV~~l~~~ 201 (210)
T 4i1u_A 154 GFTREQ---VE--AIIARQATREARLAAADDVIVNDAATPDALAVQVDALHQR 201 (210)
T ss_dssp CCCHHH---HH--HHHHHSCCHHHHHHTCSEEEECSSCCHHHHHHHHHHHHHH
T ss_pred CCCHHH---HH--HHHHHcCChHHHHHhCCEEEECCCCCHHHHHHHHHHHHHH
Confidence 11100 00 00111110 11357899998625899998888877654
No 98
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=99.14 E-value=1.9e-10 Score=99.07 Aligned_cols=110 Identities=13% Similarity=0.008 Sum_probs=68.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc--cccc-----c------cCC-----C-CH----HHHHHH
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR--NGIN-----A------NLA-----F-SE----EDRNEN 79 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~--~~l~-----~------~~~-----~-~~----~~~~~~ 79 (272)
.+|+|+|+|||||||+|++|++.+ +..+++.|.+. .++. . ..+ + .. .....+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~-----~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f 76 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET-----GWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESA 76 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH-----CCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC-----CCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHH
Confidence 489999999999999999999998 45567777653 2221 0 000 0 00 011222
Q ss_pred HHHHHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHh----CCCceEEEEEeCCH-HHHHHhhhhhh
Q psy17388 80 VRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRN----ANLEFFEVFVNTPV-EICEQRDVKGH 143 (272)
Q Consensus 80 ~~~i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~----~g~~~~~V~L~~~~-e~~~~Rl~~r~ 143 (272)
.+...... .++..|..+|+++... . .++.++.. .+..+.+|||++|. +++.+|+.+|.
T Consensus 77 ~~~~~~~i-~~~~~g~~vIl~gg~~--~---~~~~~~~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~ 139 (253)
T 2ze6_A 77 HRRLIFEV-DWRKSEEGLILEGGSI--S---LLNCMAKSPFWRSGFQWHVKRLRLGDSDAFLTRAKQRV 139 (253)
T ss_dssp HHHHHHHH-HTTTTSSEEEEEECCH--H---HHHHHHHCTTTTSSCEEEEEECCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHhCCCCeEEeccHH--H---HHHHHHhcccccccCceEEEEecchhHHHHHHHHHHHH
Confidence 23333333 4456777666554332 2 33444554 55677889999997 99999998774
No 99
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.13 E-value=1.3e-10 Score=97.25 Aligned_cols=111 Identities=14% Similarity=0.067 Sum_probs=59.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc-cccccccCCCCHHHHHHH-------HHHHHHHHHHHHhC--
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL-RNGINANLAFSEEDRNEN-------VRRAAECAKMFAEC-- 93 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i-~~~l~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~-- 93 (272)
.|+|+|+|||||||+|+.|++.+ | ..+++.|.+ ++.+..+.......+... ...+..++...+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~---g--~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~ 76 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY---G--IPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQED 76 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---C--CCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccc
Confidence 58999999999999999999998 4 455666443 332111111110000000 00111222222222
Q ss_pred -CCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388 94 -GFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG 142 (272)
Q Consensus 94 -g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r 142 (272)
+..+|+|+...... ....+......+..+|||++|++++.+|+.+|
T Consensus 77 ~~~~~i~dg~~~~~~---~~~~l~~~~~~~d~vi~l~~~~e~~~~R~~~R 123 (214)
T 1e4v_A 77 CRNGFLLDGFPRTIP---QADAMKEAGINVDYVLEFDVPDELIVDRIVGR 123 (214)
T ss_dssp GGGCEEEESCCCSHH---HHHHHHHTTCCCSEEEEEECCHHHHHHHHHTE
T ss_pred cCCCEEEeCCCCCHH---HHHHHHhcCCCCCEEEEEECCHHHHHHHHHCC
Confidence 23566665322222 22222222123457899999999999998655
No 100
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.12 E-value=6.9e-11 Score=98.21 Aligned_cols=157 Identities=13% Similarity=0.096 Sum_probs=84.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccc----cCCCCH------HHHHHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA----NLAFSE------EDRNENVRRAAECAKM 89 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~----~~~~~~------~~~~~~~~~i~~~~~~ 89 (272)
.++.+|+|+|++||||||+++.|++.+. ++.+++.|.+...-.. ...+.. .++......+......
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~----~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~ 94 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLP----NCSVISQDDFFKPESEIETDKNGFLQYDVLEALNMEKMMSAISCWMES 94 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTST----TEEEEEGGGGBCCGGGSCBCTTSCBCCSSGGGBCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcC----CcEEEeCCccccCHhHhhccccCCChhHHHHHhHHHHHHHHHHHHHhC
Confidence 4578999999999999999999998762 4777888776431110 011110 0111111111111111
Q ss_pred H-----------HhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcccc-ccc-
Q psy17388 90 F-----------AECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIK-SFT- 156 (272)
Q Consensus 90 ~-----------~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~-~~~- 156 (272)
. ......||+++...+. . +.+ . .....+||+++|++++.+|+..|.+.. .... .+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~vi~eg~~~~~-~-~~~---~---~~~d~~i~l~~~~~~~~~R~~~R~~~~---e~~~~~~~~ 163 (207)
T 2qt1_A 95 ARHSVVSTDQESAEEIPILIIEGFLLFN-Y-KPL---D---TIWNRSYFLTIPYEECKRRRSTRVYQP---PDSPGYFDG 163 (207)
T ss_dssp HTTSSCCC-----CCCCEEEEECTTCTT-C-GGG---T---TTCSEEEEEECCHHHHHHHHHHSCCSS---CCCTTHHHH
T ss_pred CCCCCcCCCeeecCCCCEEEEeehHHcC-c-HHH---H---HhcCeeEEEECCHHHHHHHHHHcCCCc---cchHHHHHH
Confidence 1 0123466666543211 1 011 1 123478999999999999985543211 0000 011
Q ss_pred c-------ccccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388 157 G-------VSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 157 ~-------~~~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
. ....++.....-+.||++ .+++++.++|.+.+.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~v~~Id~~-~~~eev~~~I~~~l~~ 205 (207)
T 2qt1_A 164 HVWPMYLKYRQEMQDITWEVVYLDGT-KSEEDLFLQVYEDLIQ 205 (207)
T ss_dssp THHHHHHHHHHHGGGCSSCCEEEETT-SCHHHHHHHHHHHHTT
T ss_pred HHhHHHHHHHHHHHhcCCeEEEecCC-CCHHHHHHHHHHHHHh
Confidence 1 111223222333668875 6999999999998864
No 101
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.10 E-value=1.4e-09 Score=89.75 Aligned_cols=157 Identities=14% Similarity=0.143 Sum_probs=83.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccc----ccccCCCCHHHHHHHHHHHH-----------
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNG----INANLAFSEEDRNENVRRAA----------- 84 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~----l~~~~~~~~~~~~~~~~~i~----------- 84 (272)
.+|.+|.|+|++||||||+++.|+..+ +...++....... .....+|...+... +..+.
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 78 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKAL-----AEIKISISHTTRPKRPGDQEGVDYFFIDETR-FQAMVKEGAFLEHATI 78 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHS-----SSEEECCCEECSCCCTTCCBTTTBEECCHHH-HHHHHHHTCEEEEEEE
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC-----CCeEEeceeccCCCchhHhcCceEEeccHHH-HHHHHhcCcEEeeeee
Confidence 367899999999999999999999876 2334443322111 11111111111111 11111
Q ss_pred ---------HHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeC-CHHHHHHhhhhhhhhhhhhccccc
Q psy17388 85 ---------ECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNT-PVEICEQRDVKGHYKKAREGKIKS 154 (272)
Q Consensus 85 ---------~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~-~~e~~~~Rl~~r~~~~~r~~~~~~ 154 (272)
..+...++.|..++++.. + .....++. ... ....||+.+ |.+++.+|+.+|... ....+..
T Consensus 79 ~~~~~~~~~~~i~~~l~~g~~vi~d~~-~--~~~~~~~~---~~~-~~~~v~~~~~~~e~l~~Rl~~R~~~--~~~~i~~ 149 (205)
T 3tr0_A 79 YERHYGTEKDWVLRQLKAGRDVLLEID-W--QGARQIRE---LFP-PALSIFILPPSIEALRERLIKRRQD--DTAIIEQ 149 (205)
T ss_dssp TTEEEEEEHHHHHHHHHTTCEEEEECC-H--HHHHHHHH---HCT-TCEEEEEECSCHHHHHHHHHTCTTS--CSSTHHH
T ss_pred ecccccchHHHHHHHHHcCCeEEEEEC-H--HHHHHHHH---hCC-CcEEEEEECcCHHHHHHHHHHhCCC--CHHHHHH
Confidence 234455677888877741 1 12222222 222 234566655 699999999765210 0000100
Q ss_pred -cccccccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388 155 -FTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAK 193 (272)
Q Consensus 155 -~~~~~~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~ 193 (272)
+.......+....++++|+++ +++++.++|.+.+...
T Consensus 150 rl~~~~~~~~~~~~~d~vi~n~--~~~~~~~~l~~~i~~~ 187 (205)
T 3tr0_A 150 RLALAREEMAHYKEFDYLVVND--NFDQAVQNLIHIISAE 187 (205)
T ss_dssp HHHHHHHHHTTGGGCSEEEECS--SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCEEEECC--CHHHHHHHHHHHHHHH
Confidence 100111111123467888865 8999999999998754
No 102
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=99.10 E-value=8.7e-10 Score=103.06 Aligned_cols=121 Identities=21% Similarity=0.239 Sum_probs=78.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccccc----CCCCHHH------HHHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINAN----LAFSEED------RNENVRRAAECAKM 89 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~----~~~~~~~------~~~~~~~i~~~~~~ 89 (272)
.++.+|+|+|+|||||||+++.|++.+...+++...++.|.++..+... ..|+... +..+.......+..
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999997666677777777666543211 1122111 11111111111233
Q ss_pred HH--hCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCC-HHHHHHhhh
Q psy17388 90 FA--ECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTP-VEICEQRDV 140 (272)
Q Consensus 90 ~~--~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~-~e~~~~Rl~ 140 (272)
+. ..|.++|+|..+.....|+.+.+.++..+..++.+.+.|+ ++.+.+|+.
T Consensus 117 ~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r~~ 170 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIV 170 (469)
T ss_dssp HHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHH
T ss_pred HHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHH
Confidence 33 4577899999998888999998888877766644444445 677777764
No 103
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.09 E-value=1.8e-10 Score=97.23 Aligned_cols=109 Identities=15% Similarity=0.117 Sum_probs=61.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccc-ccccC------------C-CCHHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNG-INANL------------A-FSEEDRNENVRRAAE 85 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~-l~~~~------------~-~~~~~~~~~~~~i~~ 85 (272)
.++++|+|+|+|||||||+|+.|++.+ +..+++.|.+... ...+. + +.. +......
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l-----~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~--~~~~~~~--- 74 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF-----ELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIP--DDVMTRL--- 74 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS-----SSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCC--HHHHHHH---
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc-----CCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCC--HHHHHHH---
Confidence 456899999999999999999999998 5667777554321 11000 0 000 0011111
Q ss_pred HHHHHHh-CCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388 86 CAKMFAE-CGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG 142 (272)
Q Consensus 86 ~~~~~~~-~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r 142 (272)
+...+.+ .+..+|+|...........+..+ ..+..+|||++|.+++.+|+.+|
T Consensus 75 ~~~~l~~~~~~~~vid~~~~~~~~~~~l~~~----~~~~~vi~L~~~~~~~~~R~~~R 128 (227)
T 1zd8_A 75 ALHELKNLTQYSWLLDGFPRTLPQAEALDRA----YQIDTVINLNVPFEVIKQRLTAR 128 (227)
T ss_dssp HHHHHHTCTTSCEEEESCCCSHHHHHHHHTT----SCCCEEEEEECCHHHHHHHHTCE
T ss_pred HHHHHhcccCCCEEEeCCCCCHHHHHHHHHh----cCCCEEEEEECCHHHHHHHHHcC
Confidence 1122222 24456666543332222222211 22447899999999999999765
No 104
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=99.01 E-value=8.6e-11 Score=100.11 Aligned_cols=27 Identities=15% Similarity=0.075 Sum_probs=25.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
+|++|+|.|.+||||||+++.|++.+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999999999983
No 105
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=99.00 E-value=2e-09 Score=88.79 Aligned_cols=158 Identities=16% Similarity=0.174 Sum_probs=69.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccc----c-ccCCCCHHHHHHHH-H------------
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGI----N-ANLAFSEEDRNENV-R------------ 81 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l----~-~~~~~~~~~~~~~~-~------------ 81 (272)
.+|.+|+|+|++||||||+++.|+..+.. ...+.-.+..+... . .+..|......... .
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDPST---SYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVG 80 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCTTC---CEECCCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhhCC---CeEEecccccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEEEeECC
Confidence 46789999999999999999999987621 11101011111100 0 01111111100000 0
Q ss_pred ----HHHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEe-CCHHHHHHhhhhhhhhhhhhccccccc
Q psy17388 82 ----RAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVN-TPVEICEQRDVKGHYKKAREGKIKSFT 156 (272)
Q Consensus 82 ----~i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~-~~~e~~~~Rl~~r~~~~~r~~~~~~~~ 156 (272)
.....+...++.|..||++..... ...++... + ..+.||+. ++.+++.+|+..|.... ...+..
T Consensus 81 ~~~g~~~~~i~~~l~~g~~vv~d~~~~~---~~~~~~~~---~-~~~~i~~~~~~~~~~~~Rl~~R~~~~--~~~~~~-- 149 (207)
T 2j41_A 81 NYYGTPVQYVKDTMDEGHDVFLEIEVEG---AKQVRKKF---P-DALFIFLAPPSLEHLRERLVGRGTES--DEKIQS-- 149 (207)
T ss_dssp EEEEEEHHHHHHHHHTTCEEEEECCGGG---HHHHHHHC---T-TSEEEEEECCC-------------------------
T ss_pred eecCCCHHHHHHHHHcCCeEEEEECHHH---HHHHHHhc---C-CeEEEEEECCCHHHHHHHHHhcCCCC--HHHHHH--
Confidence 001223444566888888764322 12233222 1 22445554 67899999996652110 001110
Q ss_pred ccccc---CCCCCCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388 157 GVSQP---YEAPKNPDLILETVNVPVEKCANSVLDMIAAK 193 (272)
Q Consensus 157 ~~~~~---ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~ 193 (272)
.+... .+....++++|+++ +++++.++|.+.+...
T Consensus 150 rl~~~~~~~~~~~~~d~vI~n~--~~e~~~~~i~~~l~~~ 187 (207)
T 2j41_A 150 RINEARKEVEMMNLYDYVVVND--EVELAKNRIQCIVEAE 187 (207)
T ss_dssp ------CGGGGGGGCSEEEECS--SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCEEEECC--CHHHHHHHHHHHHHHh
Confidence 11111 11123457888875 8999999999998754
No 106
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.97 E-value=3.1e-09 Score=94.75 Aligned_cols=117 Identities=13% Similarity=0.148 Sum_probs=71.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc--cccccc------------------c-CCC--CHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL--RNGINA------------------N-LAF--SEEDR 76 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i--~~~l~~------------------~-~~~--~~~~~ 76 (272)
.++.+|+|+|++||||||+|..|++++ +..++|.|.+ ..++.. + ..+ .....
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l-----~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~ 112 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHF-----PLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTP 112 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTS-----CEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCH
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHC-----CCcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCH
Confidence 345799999999999999999999998 6777887765 222210 0 001 11111
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEcCCCCcHHHHHHHHH-H-----------------HHhCCCceEEEEEeCCHHHHHHh
Q psy17388 77 NENVRRAAECAKMFAECGFIALCSFVSPTAAARDRARE-I-----------------HRNANLEFFEVFVNTPVEICEQR 138 (272)
Q Consensus 77 ~~~~~~i~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~-~-----------------~~~~g~~~~~V~L~~~~e~~~~R 138 (272)
..+.+.....+..+...|..+|+.++.. .+.+.+.. + ........++|||+++.+++.+|
T Consensus 113 ~~F~~~a~~~i~~i~~~g~~pIlvGGtg--lYi~all~g~~~p~~~d~~~a~~~~~~~~~~~~~~~~i~L~~~re~L~~R 190 (339)
T 3a8t_A 113 ADFRSLAGKAVSEITGRRKLPVLVGGSN--SFIHALLVDRFDSSGPGVFEEGSHSVVSSELRYDCCFLWVDVSVKVLTDY 190 (339)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECCCH--HHHHHHHBSSCCTTCC-------------CBSSEEEEEEEECCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEcCHH--HHHHHHHhCCCCCcccChhhhcccCccccccccCeEEEEEeCCHHHHHHH
Confidence 2333334455566777887776654443 22222111 0 00112356889999999999999
Q ss_pred hhhhh
Q psy17388 139 DVKGH 143 (272)
Q Consensus 139 l~~r~ 143 (272)
+.+|.
T Consensus 191 I~~R~ 195 (339)
T 3a8t_A 191 LAKRV 195 (339)
T ss_dssp HHHHH
T ss_pred HHhhc
Confidence 98774
No 107
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.96 E-value=3e-09 Score=86.98 Aligned_cols=160 Identities=14% Similarity=0.159 Sum_probs=69.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHH-cCCCEEEecCccccccccccCCCCHHHHHHHHHHH-----------------
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIA-QGIPAYALDGDNLRNGINANLAFSEEDRNENVRRA----------------- 83 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~-~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i----------------- 83 (272)
|.+++|+|++||||||+++.|...++. .|..+.+... .-+.+...+..+....... +..+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr-~~~~ge~~g~~~~~~~~~~-~~~~~~~~~~~e~~~~~~~~y 78 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTR-TPRAGEVNGKDYNFVSVDE-FKSMIKNNEFIEWAQFSGNYY 78 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECS-CCCTTCCBTTTBEECCHHH-HHHHHHTTCEEEEEEETTEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeecccc-CCCCCccCCeeeeecCHHH-HHHHHhhcceeeEEEEeceec
Confidence 457899999999999999999988742 1222211111 0111100011110000000 1100
Q ss_pred ---HHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCH-HHHHHhhhhhhhhhhhhccccc-cccc
Q psy17388 84 ---AECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPV-EICEQRDVKGHYKKAREGKIKS-FTGV 158 (272)
Q Consensus 84 ---~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~-e~~~~Rl~~r~~~~~r~~~~~~-~~~~ 158 (272)
...+...++.|..+|++.. . .....++. ..+.....||+.+|. +++.+|+..|... ....+.. +...
T Consensus 79 g~~~~~i~~~l~~g~~~il~~~-~--~g~~~l~~---~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~--~~~~i~~rl~~~ 150 (186)
T 3a00_A 79 GSTVASVKQVSKSGKTCILDID-M--QGVKSVKA---IPELNARFLFIAPPSVEDLKKRLEGRGTE--TEESINKRLSAA 150 (186)
T ss_dssp EEEHHHHHHHHHTTCEEEEECC-H--HHHHHHHT---CGGGCCEEEEEECSCC---------------------------
T ss_pred cCcHHHHHHHHHcCCeEEEEEc-H--HHHHHHHH---hcCCCeEEEEEECcCHHHHHHHHHhcCCC--CHHHHHHHHHHH
Confidence 1233455677888877632 1 11122222 022344669999965 9999999765321 1111111 1111
Q ss_pred cccCCC--CCCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388 159 SQPYEA--PKNPDLILETVNVPVEKCANSVLDMIAAK 193 (272)
Q Consensus 159 ~~~ye~--~~~~~~~Idt~~~~~ee~~~~I~~~L~~~ 193 (272)
....+. +..+|++|.++ +.+++++++.+.+...
T Consensus 151 ~~~~~~~~~~~~d~vi~nd--~~~~a~~~l~~~i~~~ 185 (186)
T 3a00_A 151 QAELAYAETGAHDKVIVND--DLDKAYKELKDFIFAE 185 (186)
T ss_dssp --------CCCCSEEEECS--SHHHHHHHHHHHHTTC
T ss_pred HHHHHhhcccCCcEEEECc--CHHHHHHHHHHHHHhc
Confidence 111111 24567888765 7999999999888653
No 108
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.94 E-value=6.5e-10 Score=92.65 Aligned_cols=160 Identities=9% Similarity=0.048 Sum_probs=78.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccccccc---ccCCCCHHHHHHHHHHH-------------
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN---ANLAFSEEDRNENVRRA------------- 83 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~---~~~~~~~~~~~~~~~~i------------- 83 (272)
.+|.+|+|+|++||||||+++.|+..++. .........-+.... .+..|...+.......+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~---~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET---SFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC---CCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC---cEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEcc
Confidence 46789999999999999999999988731 122221111111100 01111100111111100
Q ss_pred ------HHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeC-CHHHHHHhhhhhhhhhhhhccccc-c
Q psy17388 84 ------AECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNT-PVEICEQRDVKGHYKKAREGKIKS-F 155 (272)
Q Consensus 84 ------~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~-~~e~~~~Rl~~r~~~~~r~~~~~~-~ 155 (272)
...+...++.|..||++.- . .....+ ......+ ..||+.+ +.+++.+|+.+|.... ...+.. +
T Consensus 83 ~~yg~~~~~i~~~l~~g~~vild~~-~--~g~~~~---~~~~~~~-~~i~i~~ps~~~l~~Rl~~R~~~~--~e~i~~Rl 153 (208)
T 3tau_A 83 NYYGTPLEYVEEKLAAGVDIFLEIE-V--QGAMQV---RKAMPEG-IFIFLTPPDLSELKNRIIGRGTES--MEVVEERM 153 (208)
T ss_dssp EEEEEEHHHHHHHHHTTCCEEEECC-H--HHHHHH---HHHCTTS-EEEEEECTTTTTSSCC-------C--CHHHHHHH
T ss_pred ccCCCcHHHHHHHHHcCCeEEEEee-H--HHHHHH---HHhCCCe-EEEEEeCCCHHHHHHHHHhcCCCC--HHHHHHHH
Confidence 1224556678888887641 1 222222 2233323 4566665 4899999987653110 000000 0
Q ss_pred ccccccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388 156 TGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAK 193 (272)
Q Consensus 156 ~~~~~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~ 193 (272)
............++++|+++ ++++++++|.+.+...
T Consensus 154 ~~~~~e~~~~~~~d~vivN~--~~~~~~~~l~~~i~~~ 189 (208)
T 3tau_A 154 ETAKKEIEMMASYDYAVVND--VVANAVQKIKGIVETE 189 (208)
T ss_dssp HHHHHHHHHGGGSSEEEECS--SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCCEEEECc--CHHHHHHHHHHHHHHH
Confidence 00000001112457777765 6999999999998764
No 109
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.89 E-value=1.9e-09 Score=91.25 Aligned_cols=71 Identities=13% Similarity=0.153 Sum_probs=29.5
Q ss_pred CceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccccCCC-------CCCC-cEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388 121 LEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEA-------PKNP-DLILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 121 ~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~-------~~~~-~~~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
.+.++|||++|++++.+|+.+|.+...+.........++..|+. .... .++||+ +.+++++.++|.+.+.+
T Consensus 146 ~pD~vi~Ld~~~e~~~~Ri~~R~r~~e~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~-~~~~eev~~~I~~~l~~ 224 (230)
T 2vp4_A 146 QADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDA-DLNLENIGTEYQRSESS 224 (230)
T ss_dssp CCSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEEC-CC---------------
T ss_pred CCCEEEEEeCCHHHHHHHHHHcCCcccccCcHHHHHHHHHHHHHHHHHhcccCCCCEEEEEC-CCCHHHHHHHHHHHHHH
Confidence 47789999999999999986653211110000111222222221 1112 367886 56999999999888764
No 110
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=98.83 E-value=7.6e-10 Score=91.91 Aligned_cols=164 Identities=15% Similarity=0.146 Sum_probs=84.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec---------Ccccccccccc---CCCCHHHHHHHHH---HH--HH
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD---------GDNLRNGINAN---LAFSEEDRNENVR---RA--AE 85 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld---------~D~i~~~l~~~---~~~~~~~~~~~~~---~i--~~ 85 (272)
++|+|+|++||||||+++.|++.+...|+.+.++. ++.++..+... ...+.. ....+. +. ..
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~r~~~~~ 79 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLASSVY-AMATLFALDRAGAVH 79 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEESSEEEEEEEEEEHHHHEEEEEEEEEEEHH-HHHHHHHHHHHEEHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCCCcchhhHHHHHHcccccccCCCHh-HHHHHHHHHHhhhHH
Confidence 47999999999999999999999975555554443 22232222111 001111 111111 00 11
Q ss_pred HHHHHHhCCCeEEEcCCCCcH--------------HHHHHHHHHHH---hCCCceEEEEEeCCHHHHHHhhhhhhhh-hh
Q psy17388 86 CAKMFAECGFIALCSFVSPTA--------------AARDRAREIHR---NANLEFFEVFVNTPVEICEQRDVKGHYK-KA 147 (272)
Q Consensus 86 ~~~~~~~~g~~VI~d~~~~~~--------------~~r~~~~~~~~---~~g~~~~~V~L~~~~e~~~~Rl~~r~~~-~~ 147 (272)
.+...+..|.+||+|...... .+.+.+..+.. ....+..+|||++|++++.+|+.+|... ..
T Consensus 80 ~i~~~l~~g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~ 159 (214)
T 1gtv_A 80 TIQGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRDPG 159 (214)
T ss_dssp HHHHEEEEEEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEEHHHHHHHHHHHHHEBBE
T ss_pred HHHHHhhCCCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCCHHHHHHHHHcccccccc
Confidence 223334567788887543211 01222333220 1124678999999999999999766321 00
Q ss_pred hh-cccc---c-cccccccCCCCC-----CCcEEEeCCCCCHHHHHHHHHH
Q psy17388 148 RE-GKIK---S-FTGVSQPYEAPK-----NPDLILETVNVPVEKCANSVLD 188 (272)
Q Consensus 148 r~-~~~~---~-~~~~~~~ye~~~-----~~~~~Idt~~~~~ee~~~~I~~ 188 (272)
+. ...+ . ...+...|.... ...++||++ .+++++.++|.+
T Consensus 160 ~~~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~vId~~-~~~~~v~~~i~~ 209 (214)
T 1gtv_A 160 RARDNYERDAELQQRTGAVYAELAAQGWGGRWLVVGAD-VDPGRLAATLAP 209 (214)
T ss_dssp EEEEEEEEEHHHHHHHHHHHHHHHHEEEEEEEEEEEEE-EBHHHHHHHHC-
T ss_pred cccccccccHHHHHHHHHHHHHHHHhCCCCCEEEEeCC-CCHHHHHHHhcC
Confidence 00 0100 1 111223332211 123677764 688888888753
No 111
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=98.78 E-value=1.6e-08 Score=85.60 Aligned_cols=107 Identities=15% Similarity=0.175 Sum_probs=60.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc-ccccccc--------------CCCCHHHHHHHHHHHHHH
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL-RNGINAN--------------LAFSEEDRNENVRRAAEC 86 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i-~~~l~~~--------------~~~~~~~~~~~~~~i~~~ 86 (272)
-+-+.|.|+|||||||+|+.|++.+ ++.+++.+++ +..+..+ ....+ ......+.
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~-----g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpd---ei~~~ll~-- 77 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKF-----GIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPD---SLIIGLVK-- 77 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHH-----TCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCH---HHHHHHHH--
T ss_pred ccceeeECCCCCCHHHHHHHHHHHh-----CCCeeechHHHHHhccCCChHHHHHHHHHhhcccccc---HHHHHHHH--
Confidence 3567899999999999999999999 5667887543 4322211 00111 01111111
Q ss_pred HHHHHh--CCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388 87 AKMFAE--CGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG 142 (272)
Q Consensus 87 ~~~~~~--~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r 142 (272)
..+.+ ....+|.|+. |. ...+...+......+..+|+|++|.+++.+|+.+|
T Consensus 78 -~~l~~~~~~~g~ILDGf-PR--t~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R 131 (230)
T 3gmt_A 78 -ERLKEADCANGYLFDGF-PR--TIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGR 131 (230)
T ss_dssp -HHHHSGGGTTCEEEESC-CC--SHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTE
T ss_pred -HHHhCcccCCCeEecCC-CC--cHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcC
Confidence 11211 1223455642 32 12222222222223457899999999999999766
No 112
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.78 E-value=4.6e-09 Score=85.40 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=24.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.+|+|+|++||||||+++.|...+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 567899999999999999999999876
No 113
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.73 E-value=2e-08 Score=82.37 Aligned_cols=154 Identities=16% Similarity=0.169 Sum_probs=76.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc---cccc--cCCCCHHHHHHHHHHH---------------
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN---GINA--NLAFSEEDRNENVRRA--------------- 83 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~---~l~~--~~~~~~~~~~~~~~~i--------------- 83 (272)
.|+|+|||||||||+++.|.+.++. .+.+.-+..-|. +-.. ++-|-. ..+..+.+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~---~~~~svs~TTR~pR~gE~~G~dY~Fvs--~~eF~~~i~~g~flE~~~~~g~~ 77 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPD---SFGFSVSSTTRTPRAGEVNGKDYNFVS--VDEFKSMIKNNEFIEWAQFSGNY 77 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTT---TEEECCCEECSCCCTTCCBTTTBEECC--HHHHHHHHHTTCEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCC---CeEEEEEEeccCCCCCCcCCceeEeec--HHHHHHHHHcCCEEEEEEEcCce
Confidence 4899999999999999999887631 122111111111 1101 111111 11111111
Q ss_pred ----HHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEE-eCCHHHHHHhhhhhhhhhhhhccccc-ccc
Q psy17388 84 ----AECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFV-NTPVEICEQRDVKGHYKKAREGKIKS-FTG 157 (272)
Q Consensus 84 ----~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L-~~~~e~~~~Rl~~r~~~~~r~~~~~~-~~~ 157 (272)
.......+++|..||++. .. .....++.. .+.....||+ ..+.+++.+|+.+|..... ..+.. +..
T Consensus 78 YGt~~~~v~~~l~~g~~vil~i-d~--~g~~~~k~~---~~~~~~~Ifi~pps~e~L~~RL~~Rg~e~~--e~i~~Rl~~ 149 (186)
T 1ex7_A 78 YGSTVASVKQVSKSGKTCILDI-DM--QGVKSVKAI---PELNARFLFIAPPSVEDLKKRLEGRGTETE--ESINKRLSA 149 (186)
T ss_dssp EEEEHHHHHHHHHHTSEEEEEC-CH--HHHHHHHTC---GGGCCEEEEEECSCHHHHHHHHHHHCCSCH--HHHHHHHHH
T ss_pred eeeecceeeehhhCCCEEEecC-CH--HHHHHHHHh---cccCceEEEEeCCCHHHHHHHHHhcCCCCH--HHHHHHHHH
Confidence 123445567788888773 22 222233322 2222344555 5578999999976632100 00100 000
Q ss_pred ccc--cCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388 158 VSQ--PYEAPKNPDLILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 158 ~~~--~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
... .+......|.+|.++ ++++++++|.+.|.+
T Consensus 150 a~~e~~~~~~~~fD~vIvNd--dle~a~~~l~~iI~a 184 (186)
T 1ex7_A 150 AQAELAYAETGAHDKVIVND--DLDKAYKELKDFIFA 184 (186)
T ss_dssp HHHHHHHHTTTCSSEEEECS--SHHHHHHHHHHHHTT
T ss_pred HHHHHhhccccCCcEEEECc--CHHHHHHHHHHHHHh
Confidence 000 011122346777654 799999999988864
No 114
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.72 E-value=1.6e-08 Score=83.67 Aligned_cols=45 Identities=29% Similarity=0.356 Sum_probs=38.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
..++.+|.|+|++||||||+++.|+..+...|..+.+++.|.+..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~ 63 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIV 63 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccC
Confidence 457899999999999999999999999877777888887776654
No 115
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=98.71 E-value=2.3e-07 Score=76.74 Aligned_cols=158 Identities=19% Similarity=0.150 Sum_probs=82.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec-Cccccccccc--cCCCCH---------HHH---HHHHHHH
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD-GDNLRNGINA--NLAFSE---------EDR---NENVRRA 83 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld-~D~i~~~l~~--~~~~~~---------~~~---~~~~~~i 83 (272)
..+..+|.|+|.|||||+|+|+.+.+.++.. .+..+. +|.+++.... ++.+.. ..| ..+.+.+
T Consensus 8 ~~~~~II~itGk~~SGKd~va~~l~~~~g~~--~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~ 85 (202)
T 3ch4_B 8 GAPRLVLLFSGKRKSGKDFVTEALQSRLGAD--VCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEK 85 (202)
T ss_dssp CCCSEEEEEEECTTSSHHHHHHHHHHHHCTT--TEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEECCCCCChHHHHHHHHHHcCCC--CceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHH
Confidence 3577899999999999999999999977221 233333 3544432211 111111 111 1111111
Q ss_pred HH-----HHHHHHhC--CCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhccccccc
Q psy17388 84 AE-----CAKMFAEC--GFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFT 156 (272)
Q Consensus 84 ~~-----~~~~~~~~--g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~ 156 (272)
.. +++...+. ..++|++.+... ...+.++... |..+++|.+.++++++.+|...+. ..+.... .-.
T Consensus 86 R~~d~~~~~~~~~~~~~~~~vII~dvR~~-~Ev~~fr~~~---g~~~~iirI~as~~~R~~Rg~~~~--~~~Dd~e-sE~ 158 (202)
T 3ch4_B 86 RQADPGFFCRKIVEGISQPIWLVSDTRRV-SDIQWFREAY---GAVTQTVRVVALEQSRQQRGWVFT--PGVDDAE-SEC 158 (202)
T ss_dssp HHHCTTTTHHHHSBTCCCSEEEECCCCSH-HHHHHHHHHH---GGGEEEEEEEECHHHHHHTTCCCC--TTTTTSH-HHH
T ss_pred HhcCchHHHHHHHHhcCCCcEEEeCCCCH-HHHHHHHHhC---CCcEEEEEEECCHHHHHHHhhhcc--ccccccc-ccc
Confidence 11 12222221 125666666542 3445555443 225789999999999999952110 0010000 001
Q ss_pred cccccCCCCCCCcEEEeCCCCCHHHHHHHHHHHH
Q psy17388 157 GVSQPYEAPKNPDLILETVNVPVEKCANSVLDMI 190 (272)
Q Consensus 157 ~~~~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L 190 (272)
++.. + ..+|++|++++ +.++..+++...+
T Consensus 159 gL~~-~---~~~D~vI~Ndg-t~eel~~~v~~ll 187 (202)
T 3ch4_B 159 GLDN-F---GDFDWVIENHG-VEQRLEEQLENLI 187 (202)
T ss_dssp TTTT-C---CCCSEEEEECS-CHHHHHHHHHHHH
T ss_pred CCCC-C---CcCCEEEEeCC-CHHHHHHHHHHHH
Confidence 1111 1 35788888764 7777666655544
No 116
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.70 E-value=1.1e-07 Score=76.55 Aligned_cols=115 Identities=14% Similarity=0.148 Sum_probs=75.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEE
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIALC 99 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI~ 99 (272)
.+|.++.|.|++||||||+++.+.. | ...++.|.++..+..+. .........++.+..........|..++.
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~~~-----~--~~~~~~d~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 78 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKHFK-----P--TEVISSDFCRGLMSDDE-NDQTVTGAAFDVLHYIVSKRLQLGKLTVV 78 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHHSC-----G--GGEEEHHHHHHHHCSST-TCGGGHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHcc-----C--CeEEccHHHHHHhcCcc-cchhhHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 4688999999999999999997432 1 22345555443222221 11111112233333444555667888888
Q ss_pred cCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388 100 SFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG 142 (272)
Q Consensus 100 d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r 142 (272)
+..+.....+.+...+++........+++|.|...+-.|...|
T Consensus 79 ~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R 121 (171)
T 4gp7_A 79 DATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNR 121 (171)
T ss_dssp ESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTC
T ss_pred ECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcc
Confidence 8777766666766677877777888999999999998886533
No 117
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.67 E-value=5e-08 Score=80.85 Aligned_cols=41 Identities=17% Similarity=0.167 Sum_probs=32.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR 62 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~ 62 (272)
+.+|.+|.|+|++||||||+++.|+..+.. .+.+++.|.+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~~ 43 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDHYY 43 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGGCB
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCccc
Confidence 357789999999999999999999998821 27778877654
No 118
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.67 E-value=1.5e-07 Score=83.44 Aligned_cols=35 Identities=23% Similarity=0.400 Sum_probs=30.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
+.+|+|+|++||||||+|+.|++.+ +..+++.|.+
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l-----~~~iis~Ds~ 39 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADAL-----PCELISVDSA 39 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS-----CEEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc-----CCcEEeccch
Confidence 4689999999999999999999998 5677777754
No 119
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.67 E-value=5.8e-08 Score=81.83 Aligned_cols=158 Identities=14% Similarity=0.148 Sum_probs=68.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHH-HHHHHcCCCEEEecCccccccc----cccCCCCHHHHHHHHHHH-----------
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIE-SYLIAQGIPAYALDGDNLRNGI----NANLAFSEEDRNENVRRA----------- 83 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La-~~L~~~g~~~~~ld~D~i~~~l----~~~~~~~~~~~~~~~~~i----------- 83 (272)
.+|.+|.|+|++||||||+++.|+ ..++ + .+...+...... ..+..+....... +..+
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~----~-~~~~~~~~~~~~~~g~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~ 98 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQKN----N-IVKSVSVTTRAARKGEKEGKDYYFVDREE-FLRLCSNGEIIEHAE 98 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC--------C-EEECCCEESSCCCTTCCBTTTBEECCHHH-HHHHHHTTCEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCCC----C-cccccccCCCCCCccccCCCeEEEecHHH-hhhhhhcCceehhhh
Confidence 367899999999999999999999 7762 2 222211110000 0011111000000 1110
Q ss_pred ---------HHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEE-eCCHHHHHHhhhhhhhhhhhhcccc
Q psy17388 84 ---------AECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFV-NTPVEICEQRDVKGHYKKAREGKIK 153 (272)
Q Consensus 84 ---------~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L-~~~~e~~~~Rl~~r~~~~~r~~~~~ 153 (272)
...+....+.|..++.+.. . .....+++... .....||+ .++.+++.+|+..|... ....+.
T Consensus 99 ~~~~~~~~~~~~i~~~~~~~~~vild~~-~--~g~~~~~~~~~---~~~~~v~v~~~~~~~l~~Rl~~R~~~--~~~~i~ 170 (231)
T 3lnc_A 99 VFGNFYGVPRKNLEDNVDKGVSTLLVID-W--QGAFKFMEMMR---EHVVSIFIMPPSMEELRRRLCGRRAD--DSEVVE 170 (231)
T ss_dssp ETTEEEEEECTTHHHHHHHTCEEEEECC-H--HHHHHHHHHSG---GGEEEEEEECSCHHHHHHC---------------
T ss_pred hccccCCCCHHHHHHHHHcCCeEEEEcC-H--HHHHHHHHhcC---CCeEEEEEECCcHHHHHHHHHHcCCC--CHHHHH
Confidence 0112333445666766531 1 11222333221 12355666 55899999998655210 001111
Q ss_pred c-cccccccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388 154 S-FTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAK 193 (272)
Q Consensus 154 ~-~~~~~~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~ 193 (272)
. +.......+....++++|+++ +++++.+++.+.+...
T Consensus 171 ~rl~~~~~~~~~~~~~d~vI~n~--~~e~~~~~l~~~i~~~ 209 (231)
T 3lnc_A 171 ARLKGAAFEISHCEAYDYVIVNE--DIEETADRISNILRAE 209 (231)
T ss_dssp -CHHHHHHHHTTGGGSSEEEECS--SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCCeEEEECc--CHHHHHHHHHHHHHHH
Confidence 0 111111122223568888875 6999999999988763
No 120
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.67 E-value=1.3e-07 Score=79.48 Aligned_cols=162 Identities=12% Similarity=0.059 Sum_probs=84.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHH---cCCCEEEecCccccccccccCCC--CHHHHHHHHHH------------
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIA---QGIPAYALDGDNLRNGINANLAF--SEEDRNENVRR------------ 82 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~---~g~~~~~ld~D~i~~~l~~~~~~--~~~~~~~~~~~------------ 82 (272)
.+|.+++|+|++||||||+.+.|...++. .| .+ .+.+...+........| ...........
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g-~v-~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~ 91 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQV-SV-SHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFG 91 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEE-CC-CEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCCCCceEE-EE-EecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHh
Confidence 46789999999999999999999987631 11 11 11121111111111111 11110000000
Q ss_pred ----H-HHHHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhhcccc-ccc
Q psy17388 83 ----A-AECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIK-SFT 156 (272)
Q Consensus 83 ----i-~~~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~-~~~ 156 (272)
. ...+...++.|.++|.| +.+ ..+..+++... . ...++.+.-+.+.+.+|+..|.... ...+. .+.
T Consensus 92 ~~yg~~~~~v~~~l~~G~illLD-LD~--~~~~~i~~~l~-~--~~tI~i~th~~~~l~~Rl~~rG~~~--~e~i~~rl~ 163 (219)
T 1s96_A 92 NYYGTSREAIEQVLATGVDVFLD-IDW--QGAQQIRQKMP-H--ARSIFILPPSKIELDRRLRGRGQDS--EEVIAKRMA 163 (219)
T ss_dssp EEEEEEHHHHHHHHTTTCEEEEE-CCH--HHHHHHHHHCT-T--CEEEEEECSSHHHHHHHHHTTSCSC--HHHHHHHHH
T ss_pred ccCCCCHHHHHHHHhcCCeEEEE-ECH--HHHHHHHHHcc-C--CEEEEEECCCHHHHHHHHHHcCCCC--HHHHHHHHH
Confidence 0 12344566789999999 444 55566666554 2 2334445567899999885442100 00010 010
Q ss_pred cccccCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388 157 GVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAK 193 (272)
Q Consensus 157 ~~~~~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~~~ 193 (272)
.....+......+.+|.++ +++++++++.+.+...
T Consensus 164 ~a~~e~~~~~~~d~~i~Nd--~l~~a~~~l~~ii~~~ 198 (219)
T 1s96_A 164 QAVAEMSHYAEYDYLIVND--DFDTALTDLKTIIRAE 198 (219)
T ss_dssp HHHHHHTTGGGSSEEEECS--SHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCCCEEEECc--CHHHHHHHHHHHHHHH
Confidence 0001111112346777764 8999999999998754
No 121
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=98.59 E-value=2.6e-08 Score=87.30 Aligned_cols=109 Identities=16% Similarity=0.156 Sum_probs=70.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEE
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIALC 99 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI~ 99 (272)
..+.+|+|.|..||||||..+.|.+.|..+|+.+..+..-.-. +-+..++. .....+-..|.+||+
T Consensus 84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~Pt~e-----------E~~~~yl~---R~~~~LP~~G~IvIf 149 (304)
T 3czq_A 84 GKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKPTET-----------ERGQWYFQ---RYVATFPTAGEFVLF 149 (304)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCSCCHH-----------HHTSCTTH---HHHTTCCCTTCEEEE
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCCcChH-----------HHhchHHH---HHHHhcccCCeEEEE
Confidence 4689999999999999999999999998777766554322100 00001111 222233367889998
Q ss_pred cCCCC-------------cHHHHHHHHH------HHHhCCCceEEEEEeCCHHHHHHhhhhh
Q psy17388 100 SFVSP-------------TAAARDRARE------IHRNANLEFFEVFVNTPVEICEQRDVKG 142 (272)
Q Consensus 100 d~~~~-------------~~~~r~~~~~------~~~~~g~~~~~V~L~~~~e~~~~Rl~~r 142 (272)
|..-. ...+...+.. ++...|.+++++||++|.++..+|+..|
T Consensus 150 DRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq~kR~~~R 211 (304)
T 3czq_A 150 DRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKRFHDR 211 (304)
T ss_dssp EECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHHHHHHHHH
T ss_pred ECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHHHHHHHHh
Confidence 73211 1111122222 3445688999999999999999999655
No 122
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.52 E-value=2.1e-07 Score=79.22 Aligned_cols=44 Identities=16% Similarity=0.162 Sum_probs=33.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHc-----CCCEEEecCccccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQ-----GIPAYALDGDNLRN 63 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~-----g~~~~~ld~D~i~~ 63 (272)
.++.+|.|+|++||||||+++.|+..++.. ...+.+++.|.+..
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~ 71 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYK 71 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCcc
Confidence 578899999999999999999999988321 11344677665543
No 123
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=98.52 E-value=2e-06 Score=75.79 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=31.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
++.+|+|+|++||||||+|..|++.+ +..+++.|.+
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~-----~~~iis~Ds~ 37 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRL-----NGEVISGDSM 37 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTT-----TEEEEECCGG
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhC-----ccceeecCcc
Confidence 56799999999999999999999998 5677777754
No 124
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.49 E-value=2.3e-06 Score=70.60 Aligned_cols=33 Identities=27% Similarity=0.239 Sum_probs=26.2
Q ss_pred hhhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 14 RDFKEGQSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 14 r~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
|..+..+++.+|+|+|++||||||+.+.|.+.+
T Consensus 11 ~~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 11 RENLYFQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp -----CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred cccCCCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 455566789999999999999999999999876
No 125
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.45 E-value=4.3e-07 Score=77.25 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=24.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.+|.+|+|+|++||||||+++.|++.+
T Consensus 25 ~~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 25 SKLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999999999
No 126
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=98.43 E-value=2.6e-07 Score=82.39 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIA 48 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~ 48 (272)
++++|+|.|+.||||||+++.|++.|..
T Consensus 6 ~~~fI~~EG~dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 6 TIVRIYLDGVYGIGKSTTGRVMASAASG 33 (334)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 5689999999999999999999999854
No 127
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=98.40 E-value=4.9e-06 Score=73.22 Aligned_cols=36 Identities=19% Similarity=0.403 Sum_probs=30.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
..|.+|+|+|++||||||+|..|++.+ +..+++.|.
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~-----~~~iis~Ds 43 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKIL-----PVELISVDS 43 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHS-----CEEEEECCT
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhC-----CCcEEeccc
Confidence 346799999999999999999999998 556666664
No 128
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.31 E-value=6.2e-07 Score=79.59 Aligned_cols=44 Identities=14% Similarity=0.127 Sum_probs=34.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHH--cCCCEEEecCcccc
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLIA--QGIPAYALDGDNLR 62 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~--~g~~~~~ld~D~i~ 62 (272)
+.+|.+|.|+|++||||||+++.|...+.. .+..+.++..|.+.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~ 134 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL 134 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence 356789999999999999999999998852 12356677777653
No 129
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=98.26 E-value=4.3e-07 Score=79.52 Aligned_cols=43 Identities=21% Similarity=0.480 Sum_probs=34.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
++.+|.|+|++||||||+|+.|++.++..|..+.+++.|.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 5678999999999999999999999865566688999998874
No 130
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=98.22 E-value=3.6e-06 Score=75.07 Aligned_cols=34 Identities=21% Similarity=0.475 Sum_probs=30.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
.+|+|+|++||||||+|+.|++.+ ++.+++.|.+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l-----~~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF-----NGEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT-----TEEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc-----CCceeccccc
Confidence 689999999999999999999998 5778888876
No 131
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=98.22 E-value=2.1e-06 Score=80.36 Aligned_cols=111 Identities=13% Similarity=0.054 Sum_probs=70.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEE
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIAL 98 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI 98 (272)
...|.+|+|.|..||||+|..+.|.+.|..+|+.+..+..-.-.+. ..+| + ......+-..|.++|
T Consensus 40 ~~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~Pt~~E~---~~~y--------l---~R~~~~lP~~G~IvI 105 (500)
T 3czp_A 40 ARFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLRPSDEEL---ERPP--------Q---WRFWRRLPPKGRTGI 105 (500)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSSCCHHHH---TSCT--------T---HHHHHHCCCTTCEEE
T ss_pred CCCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhc---cCCh--------h---hhHHHhCCCCCeEEE
Confidence 4678999999999999999999999999877776655442211110 0011 1 122333445788888
Q ss_pred EcCCC-------------CcHH---HHHHH---HHHHHhCCCceEEEEEeCCHHHHHHhhhhhh
Q psy17388 99 CSFVS-------------PTAA---ARDRA---REIHRNANLEFFEVFVNTPVEICEQRDVKGH 143 (272)
Q Consensus 99 ~d~~~-------------~~~~---~r~~~---~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~ 143 (272)
.|..- +... ..+.+ ...+...|++++.+||++|.++..+|+..|.
T Consensus 106 fdRSwYs~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~kRl~~R~ 169 (500)
T 3czp_A 106 FFGNWYSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKERLKALE 169 (500)
T ss_dssp EESCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHCC----
T ss_pred EeCchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHHHHHHHHh
Confidence 76321 1011 11222 2336677999999999999999999997663
No 132
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=98.19 E-value=9e-06 Score=73.38 Aligned_cols=31 Identities=16% Similarity=0.192 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcC
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQG 50 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g 50 (272)
.++++|+|.|+.||||||+++.|++.|...|
T Consensus 47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~~~g 77 (376)
T 1of1_A 47 PTLLRVYIDGPHGMGKTTTTQLLVALGSRDD 77 (376)
T ss_dssp CEEEEEEECSSTTSSHHHHHHHHHC----CC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhhhCC
Confidence 4678899999999999999999999986544
No 133
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=98.16 E-value=4.6e-06 Score=74.19 Aligned_cols=30 Identities=17% Similarity=0.201 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcC
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQG 50 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g 50 (272)
++++|+|.|+.||||||+++.|++.|...|
T Consensus 3 ~~~fI~~EG~dGsGKTT~~~~La~~L~~~g 32 (331)
T 1e2k_A 3 TLLRVYIDGPHGMGKTTTTQLLVALGSRDD 32 (331)
T ss_dssp EEEEEEECSCTTSSHHHHHHHHTC----CC
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHhhhCC
Confidence 468999999999999999999999986544
No 134
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.13 E-value=2.2e-05 Score=64.53 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
++.+++|+|++||||||+.+.|...+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 46789999999999999999999876
No 135
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=98.11 E-value=5.2e-06 Score=77.75 Aligned_cols=110 Identities=9% Similarity=0.013 Sum_probs=72.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEE
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIALC 99 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI~ 99 (272)
..|.+|+|.|..||||+|..+.|.+.|..+|+.+..+..-.-.+. ..+|- ......+-..|.++|.
T Consensus 298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~~Pt~~E~---~~~yl-----------~R~~~~lP~~G~i~If 363 (500)
T 3czp_A 298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIAAPTEEER---AQPYL-----------WRFWRHIPARRQFTIF 363 (500)
T ss_dssp GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECCSCCHHHH---TSCTT-----------HHHHTTCCCTTCEEEE
T ss_pred CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhh---cchHH-----------HHHHHhCCCCCeEEEE
Confidence 578999999999999999999999999888877765542211110 00111 1222334457888887
Q ss_pred cCCCC-------------cHHHH---HH---HHHHHHhCCCceEEEEEeCCHHHHHHhhhhhh
Q psy17388 100 SFVSP-------------TAAAR---DR---AREIHRNANLEFFEVFVNTPVEICEQRDVKGH 143 (272)
Q Consensus 100 d~~~~-------------~~~~r---~~---~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~ 143 (272)
|..-. ...+. +. +...+...|++++.+||++|.++..+|+..|.
T Consensus 364 DRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~eeQ~~R~~~R~ 426 (500)
T 3czp_A 364 DRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQMERFKERE 426 (500)
T ss_dssp ESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCHHHHHHHHHHHH
T ss_pred eCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCHHHHHHHHHHHh
Confidence 73211 11111 12 22224567899999999999999999997663
No 136
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=98.02 E-value=3.9e-06 Score=74.88 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=27.0
Q ss_pred CCCeEEEEEcCCCCCHHHHH-HHHHHHHHHcC
Q psy17388 20 QSNICLLFPGLSGAGKTSIS-FQIESYLIAQG 50 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlA-r~La~~L~~~g 50 (272)
.++++|+|.|..||||||++ +.|++.+...|
T Consensus 10 ~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~~g 41 (341)
T 1osn_A 10 MGVLRIYLDGAYGIGKTTAAEEFLHHFAITPN 41 (341)
T ss_dssp EEEEEEEEEESSSSCTTHHHHHHHHTTTTSGG
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHHHhhCC
Confidence 35789999999999999999 99999985444
No 137
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.95 E-value=3.5e-05 Score=70.20 Aligned_cols=34 Identities=21% Similarity=0.483 Sum_probs=29.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
+.+|+|+|++||||||+|..|++.+ +..+++.|.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~-----~~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF-----NGEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH-----TEEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC-----CCeEeecCc
Confidence 5689999999999999999999999 456677665
No 138
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.94 E-value=1.2e-05 Score=66.43 Aligned_cols=42 Identities=29% Similarity=0.442 Sum_probs=32.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
..++.+|.|.|++||||||+++.|+..+...|....++..|.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~ 60 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG 60 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence 467899999999999999999999999864443344554443
No 139
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.92 E-value=0.00053 Score=59.52 Aligned_cols=42 Identities=24% Similarity=0.483 Sum_probs=33.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCC----CEEEecCccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGI----PAYALDGDNL 61 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~----~~~~ld~D~i 61 (272)
.++..++|.|+||+||||+|+++++.+...+. ++..++...+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 44567999999999999999999999976543 5666765544
No 140
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.90 E-value=1.6e-05 Score=66.20 Aligned_cols=44 Identities=7% Similarity=-0.025 Sum_probs=37.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
.++..++|.|++|+||||+++++++.+...+.++.+++...+..
T Consensus 50 ~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~ 93 (242)
T 3bos_A 50 DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHAS 93 (242)
T ss_dssp CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGG
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence 35678999999999999999999999987778888888765543
No 141
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=97.88 E-value=1.9e-05 Score=68.44 Aligned_cols=162 Identities=13% Similarity=0.151 Sum_probs=94.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEE
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAKMFAECGFIALC 99 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~VI~ 99 (272)
..+.+|+|.|..||||.++.+.|.+.|..+|+.+..+..-.-.+. ..+| +......+-..|.++|.
T Consensus 73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~~Pt~eE~---~~~y-----------lwR~~~~lP~~G~I~IF 138 (289)
T 3rhf_A 73 PKRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFKAPTDEEK---SHDF-----------LWRIEKQVPAAGMVGVF 138 (289)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECCSCCHHHH---TSCT-----------THHHHTTCCCTTCEEEE
T ss_pred CCcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECCCCChhhh---cCCH-----------HHHHHHhCCCCCeEEEE
Confidence 368999999999999999999999999877776655432211100 0011 11233344567888887
Q ss_pred cCCCC------------c-HHH------HHHHHHHHHhCCCceEEEEEeCCHHHHHHhhhhhhhhhhhh-----cccc--
Q psy17388 100 SFVSP------------T-AAA------RDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKARE-----GKIK-- 153 (272)
Q Consensus 100 d~~~~------------~-~~~------r~~~~~~~~~~g~~~~~V~L~~~~e~~~~Rl~~r~~~~~r~-----~~~~-- 153 (272)
+..-. . ..+ ...+...+.+.|+.++.+||++|.++..+|+..|.....+. .++.
T Consensus 139 dRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIskeEQ~kR~~~R~~dP~k~WK~s~~D~~~r 218 (289)
T 3rhf_A 139 DRSQYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNISKDEQKKRLIARLDDPSKHWKYSRGDLAER 218 (289)
T ss_dssp ESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCHHHHHHHHHHHHHCGGGGGGCCHHHHHHH
T ss_pred eCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCHHHHHHHHHHHhcCCcccccCCHHHHHHH
Confidence 63110 0 111 12233445567999999999999999999997663221111 0010
Q ss_pred -ccccccccCC-------CCCCCcEEEeCCCCC--HHHHHHHHHHHHHhCCC
Q psy17388 154 -SFTGVSQPYE-------APKNPDLILETVNVP--VEKCANSVLDMIAAKGL 195 (272)
Q Consensus 154 -~~~~~~~~ye-------~~~~~~~~Idt~~~~--~ee~~~~I~~~L~~~~~ 195 (272)
.+......|+ .+..|-.+|+.++.- --.+++.|++.|++.+.
T Consensus 219 ~~wd~Y~~a~e~ml~~T~t~~APW~VV~addK~~arl~v~~~ll~~Le~~~~ 270 (289)
T 3rhf_A 219 AYWDDYMDAYSVAFEKTSTEIAPWHVVPANKKWYARIAVQQLLLDALGGLQL 270 (289)
T ss_dssp TTHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCeEEEeCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 1111111111 233566888876533 22377788888887543
No 142
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.86 E-value=1.9e-05 Score=63.54 Aligned_cols=39 Identities=13% Similarity=0.100 Sum_probs=33.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD 59 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D 59 (272)
+..+|.|+|++||||||++..|...|..+|+++..+..|
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~ 41 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH 41 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeC
Confidence 345899999999999999999999998888887776654
No 143
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.84 E-value=1.9e-05 Score=69.52 Aligned_cols=43 Identities=19% Similarity=0.418 Sum_probs=38.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR 62 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~ 62 (272)
.+|.+|+|+|++||||||++..|+..+...|..+.+++.|..+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r 144 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR 144 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence 5688999999999999999999999998788888888888654
No 144
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=97.82 E-value=0.00019 Score=60.96 Aligned_cols=67 Identities=6% Similarity=-0.015 Sum_probs=39.5
Q ss_pred EEEEEeCCHHHHHHhhhhhhhhhhhhccccccccccc----cCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHh
Q psy17388 124 FEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQ----PYEAPKNPDLILETVNVPVEKCANSVLDMIAA 192 (272)
Q Consensus 124 ~~V~L~~~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~----~ye~~~~~~~~Idt~~~~~ee~~~~I~~~L~~ 192 (272)
.+|.++|+.++..+|+.+|......-.. +....+.. .-+....+|++|+++ .++++..++|.+.++.
T Consensus 170 ~VvVvdv~~~~qieRl~~rg~~~v~i~~-~~~~~i~~Q~se~~~k~~~AD~VI~N~-gsle~l~~qV~~ll~~ 240 (241)
T 1dek_A 170 YYIVPDTRQDHEMDAARAMGATVIHVVR-PGQKSNDTHITEAGLPIRDGDLVITND-GSLEELFSKIKNTLKV 240 (241)
T ss_dssp EEEECCCCSHHHHHHHHHTTCEEEEEEC-TTCCCSCCSGGGSCCCCCTTCEEEECC-SCHHHHHHHHHHHHHT
T ss_pred EEEEEcCCcHHHHHHHHHCCCceEEEEC-cccchhhcCCCcccccccCCCEEEECC-CCHHHHHHHHHHHHhh
Confidence 5688899999999998654210000000 00001111 101234678999986 5999999999887753
No 145
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.81 E-value=1.8e-05 Score=62.17 Aligned_cols=42 Identities=19% Similarity=0.213 Sum_probs=35.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR 62 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~ 62 (272)
++..++|.|++||||||++++++..+...|..+.+++...+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~ 76 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMP 76 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhh
Confidence 678899999999999999999999887667778888765543
No 146
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.80 E-value=2.5e-05 Score=72.05 Aligned_cols=43 Identities=26% Similarity=0.423 Sum_probs=39.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
+|.+|+++|++||||||++..|+..+...|..+..++.|.++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~ 141 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRP 141 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSST
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch
Confidence 5889999999999999999999999988899999999998765
No 147
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.78 E-value=1.7e-05 Score=69.34 Aligned_cols=44 Identities=23% Similarity=0.350 Sum_probs=33.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcC--CCEEEe-cCcccc
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQG--IPAYAL-DGDNLR 62 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g--~~~~~l-d~D~i~ 62 (272)
..+|.+|.|+|++||||||+++.|+..+...| .++..+ ..|.+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~ 74 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY 74 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence 45788999999999999999999999996433 234444 666553
No 148
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.74 E-value=2.1e-05 Score=63.22 Aligned_cols=40 Identities=28% Similarity=0.448 Sum_probs=32.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCCEEEecCcc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLI-AQGIPAYALDGDN 60 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~-~~g~~~~~ld~D~ 60 (272)
++..++|.|++|+||||++++++..+. ..|..+.+++...
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~ 77 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKD 77 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 468899999999999999999999886 5676666665443
No 149
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.73 E-value=2.6e-05 Score=68.04 Aligned_cols=39 Identities=21% Similarity=0.206 Sum_probs=32.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
.+|..++|.|+||+|||++|+++++.+ |.+++.++...+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~~~l 72 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM---GINPIMMSAGEL 72 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeHHHh
Confidence 456789999999999999999999999 778887775443
No 150
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.73 E-value=3e-05 Score=71.44 Aligned_cols=44 Identities=18% Similarity=0.339 Sum_probs=39.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
.+|.+|+++|++||||||++..|+..+...|.++.+++.|..+.
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~ 138 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRP 138 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccch
Confidence 35889999999999999999999999988899999999987654
No 151
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.70 E-value=3.8e-05 Score=67.53 Aligned_cols=42 Identities=12% Similarity=0.175 Sum_probs=32.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCCCEEEecCccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLI--AQGIPAYALDGDNL 61 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~--~~g~~~~~ld~D~i 61 (272)
.+|.+|.|+|++||||||+++.|+..+. ..+..+.+++.|.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 5678999999999999999999999884 22224666666554
No 152
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.70 E-value=5.4e-05 Score=67.06 Aligned_cols=43 Identities=21% Similarity=0.377 Sum_probs=38.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR 62 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~ 62 (272)
.+|.+|.|+|++|+||||++..|+..+...|..+.++|.|..+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r 145 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFR 145 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 5688999999999999999999999998888899999988654
No 153
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.69 E-value=5.1e-05 Score=60.42 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=26.4
Q ss_pred cCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy17388 18 EGQSNICLLFPGLSGAGKTSISFQIESYLIA 48 (272)
Q Consensus 18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~ 48 (272)
....+..++|+|++|+||||+++.+++.+..
T Consensus 39 ~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 39 QRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp TSSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred hcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3345667899999999999999999999864
No 154
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.68 E-value=4.9e-05 Score=66.60 Aligned_cols=43 Identities=19% Similarity=0.237 Sum_probs=38.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHH-cCCCEEEecCcccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIA-QGIPAYALDGDNLR 62 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~-~g~~~~~ld~D~i~ 62 (272)
.+|.+|+|.|++||||||++..|+..+.. +|..+.+++.|..+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r 146 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYR 146 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCccc
Confidence 35789999999999999999999999975 78889999998754
No 155
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.66 E-value=0.00014 Score=66.91 Aligned_cols=41 Identities=20% Similarity=0.184 Sum_probs=34.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
.+|+=|+|.||||+|||++|+++|..+ |.+++.++...+..
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~s~l~~ 253 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQT---NATFLKLAAPQLVQ 253 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGGCS
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHh---CCCEEEEehhhhhh
Confidence 456789999999999999999999999 67777777665543
No 156
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.66 E-value=5.8e-05 Score=64.13 Aligned_cols=40 Identities=23% Similarity=0.404 Sum_probs=32.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
.+.-|+|.|+||+||||+|++++..+ +.+++.++...+..
T Consensus 44 ~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 44 IPKGVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGSDFVE 83 (257)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH---TCCEEEECSCSSTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHc---CCCEEEEeHHHHHH
Confidence 35569999999999999999999988 56777787665543
No 157
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.64 E-value=6.3e-05 Score=66.84 Aligned_cols=44 Identities=23% Similarity=0.508 Sum_probs=37.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR 62 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~ 62 (272)
..+|.+|.|.|++||||||+++.|+..+...+..+.+.+.|..+
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r 169 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFR 169 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccc
Confidence 35789999999999999999999999998777777777766544
No 158
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.64 E-value=5.5e-05 Score=61.78 Aligned_cols=38 Identities=21% Similarity=0.216 Sum_probs=32.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
..++|.|++|+||||++++++..+...+.++.+++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~ 92 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPE 92 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHH
Confidence 68999999999999999999999977777777766443
No 159
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.63 E-value=7.2e-05 Score=65.77 Aligned_cols=43 Identities=26% Similarity=0.409 Sum_probs=36.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR 62 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~ 62 (272)
.+|.+|.|.|++||||||+++.|+..+...+..+.+.+.|..+
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r 142 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFR 142 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSS
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCC
Confidence 3678999999999999999999999987766677777777544
No 160
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.62 E-value=6.6e-05 Score=63.61 Aligned_cols=40 Identities=23% Similarity=0.340 Sum_probs=32.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR 62 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~ 62 (272)
..+..|+|.|+||+||||+|+++++.+ +.+++.++...+.
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~~~~~~~~ 76 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA---QVPFLAMAGAEFV 76 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH---TCCEEEEETTTTS
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEechHHHH
Confidence 345678999999999999999999998 6677777766553
No 161
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.60 E-value=8.1e-05 Score=63.18 Aligned_cols=41 Identities=24% Similarity=0.457 Sum_probs=37.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
+++..+++++|.+|+||||++..|+..+. .|.++..+|.|.
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~ 51 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDT 51 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCS
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence 45678999999999999999999999998 888999999885
No 162
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.59 E-value=9.7e-05 Score=64.88 Aligned_cols=43 Identities=23% Similarity=0.414 Sum_probs=35.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR 62 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~ 62 (272)
.+|.+|.|.|++||||||+++.|+..+...+..+.+...|..+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r 140 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR 140 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 4688999999999999999999999987766677666666443
No 163
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.58 E-value=7.8e-05 Score=61.71 Aligned_cols=41 Identities=20% Similarity=0.334 Sum_probs=33.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
.++.++.|.|++||||||+++.++..+...+.++.+++.+.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE 61 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 36789999999999999999999977765566788877653
No 164
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.57 E-value=6.5e-05 Score=59.72 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=25.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIA 48 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~ 48 (272)
..+..++|+|++|+||||+++++++.+..
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 44567899999999999999999999854
No 165
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.56 E-value=0.00026 Score=65.24 Aligned_cols=41 Identities=17% Similarity=0.249 Sum_probs=34.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
.+|+=|+|.||||+|||++|+++|..+ |.+++.++...+..
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATI---GANFIFSPASGIVD 253 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGTCC
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehhhhcc
Confidence 456779999999999999999999999 67777777655543
No 166
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.56 E-value=0.00011 Score=67.65 Aligned_cols=44 Identities=27% Similarity=0.395 Sum_probs=40.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCEEEecCccccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQ-GIPAYALDGDNLRN 63 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~-g~~~~~ld~D~i~~ 63 (272)
.+|.+|+++|.+|+||||++..|+..+... |.++..+|.|..+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~ 142 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRP 142 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSST
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 457899999999999999999999999988 99999999997654
No 167
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.00033 Score=64.39 Aligned_cols=40 Identities=18% Similarity=0.247 Sum_probs=33.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR 62 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~ 62 (272)
.+|+=|+|.||||+|||++|+++|..+ |.+++.++...+.
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~~~l~ 243 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANST---KAAFIRVNGSEFV 243 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHH---TCEEEEEEGGGTC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEecchhh
Confidence 456679999999999999999999999 6777777765543
No 168
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.53 E-value=0.00025 Score=64.54 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=33.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
.+|+=|+|.||||+|||++|+++|..+ |.+++.++...+..
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e~---~~~f~~v~~s~l~s 220 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHHT---DCKFIRVSGAELVQ 220 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHHH---TCEEEEEEGGGGSC
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHhh---CCCceEEEhHHhhc
Confidence 455669999999999999999999998 67777777665543
No 169
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.53 E-value=9.7e-05 Score=60.03 Aligned_cols=36 Identities=14% Similarity=0.024 Sum_probs=29.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYAL 56 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~l 56 (272)
++.+++++|+|||||||++..++.++..+|.++.++
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 467999999999999999988888776667666543
No 170
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.53 E-value=0.00011 Score=61.46 Aligned_cols=41 Identities=24% Similarity=0.242 Sum_probs=34.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
.++.++.|.|+|||||||++..++..+...|.++.+++.+.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 36789999999999999999999887766677888888764
No 171
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.52 E-value=0.00013 Score=68.20 Aligned_cols=43 Identities=26% Similarity=0.437 Sum_probs=36.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR 62 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~ 62 (272)
.+|.+|.|.|++||||||+++.|+..+...+..+.+.+.|.++
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR 333 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTC
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccc
Confidence 4689999999999999999999999987766677766777554
No 172
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.00028 Score=64.70 Aligned_cols=41 Identities=17% Similarity=0.262 Sum_probs=34.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
.+|+=|+|.|+||+|||++|+++|..+ |.+++.++...+..
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~fi~v~~s~l~s 254 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQT---SATFLRIVGSELIQ 254 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHH---TCEEEEEESGGGCC
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHh---CCCEEEEEHHHhhh
Confidence 456779999999999999999999999 67777777665543
No 173
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.51 E-value=0.00014 Score=65.37 Aligned_cols=43 Identities=23% Similarity=0.414 Sum_probs=35.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR 62 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~ 62 (272)
.+|.+|.|.|++||||||+++.|+..+...+..+.+...|..+
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r 197 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR 197 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccc
Confidence 4688999999999999999999999987766677766666543
No 174
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.51 E-value=5.9e-05 Score=69.55 Aligned_cols=44 Identities=23% Similarity=0.511 Sum_probs=39.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
.+|.+|+|+|++|+||||++..|+..+...|.++.+++.|..+.
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~ 140 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRP 140 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCc
Confidence 34678999999999999999999999988888999999997654
No 175
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.49 E-value=0.00069 Score=60.35 Aligned_cols=41 Identities=10% Similarity=0.084 Sum_probs=35.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
+++.+++|.|.||+||||++..++..+...|.++.+++.+.
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEm 84 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEM 84 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 57789999999999999999999998877788888888653
No 176
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.49 E-value=0.00011 Score=68.85 Aligned_cols=44 Identities=25% Similarity=0.462 Sum_probs=37.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
.++.+|+|+|.+||||||++..|+..+...|.++..++.|..+.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~ 142 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRA 142 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 45789999999999999999999999988888999999987654
No 177
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.49 E-value=0.00014 Score=60.97 Aligned_cols=37 Identities=16% Similarity=0.029 Sum_probs=33.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYAL 56 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~l 56 (272)
.++.+++++|+||+||||.+..++.++..+|..+.++
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 5688999999999999999999999998888888877
No 178
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.48 E-value=0.00016 Score=60.74 Aligned_cols=38 Identities=21% Similarity=0.241 Sum_probs=34.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
..|++.|.+|+||||++-.++..+...|+.+.++|.|.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 46999999999999999999999998999998888774
No 179
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.48 E-value=0.00019 Score=58.46 Aligned_cols=30 Identities=30% Similarity=0.498 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQ 49 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~ 49 (272)
.++..++|.|++|+||||+++.+++.+...
T Consensus 36 ~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~ 65 (226)
T 2chg_A 36 KNIPHLLFSGPPGTGKTATAIALARDLFGE 65 (226)
T ss_dssp TCCCCEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 333349999999999999999999988543
No 180
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.00036 Score=64.55 Aligned_cols=41 Identities=20% Similarity=0.214 Sum_probs=34.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
.+|+=|+|.|+||+|||++|+++|..+ |.+++.++...+..
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~---~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRT---DATFIRVIGSELVQ 281 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHH---TCEEEEEEGGGGCC
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhcc---CCCeEEEEhHHhhc
Confidence 567789999999999999999999999 66777777665543
No 181
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.46 E-value=8.6e-05 Score=63.90 Aligned_cols=39 Identities=21% Similarity=0.283 Sum_probs=31.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
.++..++|.|+||+||||+|+++++.+ +.++..++...+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~~ 87 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET---NATFIRVVGSEL 87 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT---TCEEEEEEGGGG
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehHHH
Confidence 456679999999999999999999988 556666665444
No 182
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.46 E-value=0.00014 Score=58.59 Aligned_cols=36 Identities=31% Similarity=0.356 Sum_probs=30.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD 57 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld 57 (272)
..+++|+|++||||||+.+.|...+...|..+..+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~ 41 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIK 41 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEe
Confidence 458999999999999999999999877776665444
No 183
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.45 E-value=0.00015 Score=62.19 Aligned_cols=37 Identities=19% Similarity=0.297 Sum_probs=30.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG 58 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~ 58 (272)
..++..++|.|+||+||||+|+++++.+ +.+++.++.
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~~~i~~ 97 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEES---NFPFIKICS 97 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSEEEEEC
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCEEEEeC
Confidence 4567789999999999999999999987 667666643
No 184
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.45 E-value=0.00011 Score=60.37 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=32.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
.++.++.|.|++||||||+++.++. ..|.++.+++.+.
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEG 55 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSC
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCC
Confidence 4678999999999999999999998 2366788888764
No 185
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.44 E-value=9.8e-05 Score=63.97 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=31.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
.++..++|.|+||+||||+|+++++.+ +.++..++...+
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l 90 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC---SATFLNISAASL 90 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT---TCEEEEEESTTT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEeeHHHH
Confidence 356789999999999999999999987 556666665444
No 186
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.43 E-value=0.00017 Score=64.67 Aligned_cols=41 Identities=17% Similarity=0.163 Sum_probs=36.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
++.++.|.|+|||||||++..++..+...|..+.|+|.+..
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s 100 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHA 100 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 67899999999999999999999988777778889998653
No 187
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.43 E-value=0.0002 Score=62.56 Aligned_cols=42 Identities=24% Similarity=0.407 Sum_probs=37.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR 62 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~ 62 (272)
+|.+|.++|.+|+||||++..|+..+...|..+.++|.|..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~ 138 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc
Confidence 678999999999999999999999998888889889888543
No 188
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.43 E-value=0.00015 Score=64.90 Aligned_cols=41 Identities=22% Similarity=0.247 Sum_probs=36.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD 59 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D 59 (272)
..+..+|.|+|.||+||||++..|+..+...|.++..++.|
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 34667899999999999999999999998788888888877
No 189
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.42 E-value=0.00016 Score=63.36 Aligned_cols=42 Identities=19% Similarity=0.368 Sum_probs=38.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
+.+|.++|.+|+||||++..|+..+...|..+.++|.|..+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~ 139 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP 139 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCH
Confidence 789999999999999999999999988888999999986553
No 190
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.42 E-value=0.00011 Score=64.29 Aligned_cols=38 Identities=24% Similarity=0.313 Sum_probs=30.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
.++..|+|.|+||+||||+|++++..+ +.+++.++...
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~---~~~~i~v~~~~ 84 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPE 84 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHT---TCEEEEECHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHh---CCCEEEEEhHH
Confidence 456789999999999999999999987 55666665433
No 191
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.41 E-value=0.00024 Score=58.18 Aligned_cols=37 Identities=8% Similarity=-0.076 Sum_probs=33.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYAL 56 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~l 56 (272)
.++.+++++|+|||||||.+-.++.++..+|.++.++
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~ 42 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVF 42 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 5678999999999999999999999998888888766
No 192
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.41 E-value=0.0006 Score=60.00 Aligned_cols=40 Identities=10% Similarity=0.082 Sum_probs=34.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD 59 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D 59 (272)
.++.+++|+|.||+||||++..++......|.++.+++.+
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 4678999999999999999999998876666678888765
No 193
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.40 E-value=0.00013 Score=64.14 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=34.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
.+..++|.|+||+||||++++++..+...+.++.+++...+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~ 76 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF 76 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH
Confidence 45679999999999999999999998766778888875443
No 194
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.39 E-value=0.00018 Score=62.79 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=37.1
Q ss_pred cCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 18 EGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
...++++|.++|-.|+||||+|-.|+..|...|.++..+|.|.
T Consensus 37 ~~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 79 (307)
T 3end_A 37 KITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDP 79 (307)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred ccCCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3456788888899999999999999999999999999999884
No 195
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.39 E-value=0.00014 Score=63.08 Aligned_cols=40 Identities=20% Similarity=0.355 Sum_probs=32.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR 62 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~ 62 (272)
.++..++|.|+||+||||+|+++++.+ +.++..++...+.
T Consensus 48 ~~~~~vll~G~~GtGKT~la~~la~~l---~~~~~~i~~~~~~ 87 (310)
T 1ofh_A 48 VTPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEATKFT 87 (310)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGGGS
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEcchhcc
Confidence 346678999999999999999999998 5677777765443
No 196
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.39 E-value=0.00019 Score=60.12 Aligned_cols=41 Identities=22% Similarity=0.257 Sum_probs=31.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCCEEEecCcc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLI-AQGIPAYALDGDN 60 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~-~~g~~~~~ld~D~ 60 (272)
.++.++.|.|++||||||+++.++.... ..+....+++.+.
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~ 69 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC
Confidence 4788999999999999999999984322 3355666666553
No 197
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.39 E-value=0.00021 Score=62.04 Aligned_cols=40 Identities=15% Similarity=0.037 Sum_probs=33.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCEEEecCc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQ-GIPAYALDGD 59 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~-g~~~~~ld~D 59 (272)
.++.+++|.|+|||||||+++.++..+... |.++.+++.+
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE 73 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 478899999999999999999999988654 6677777654
No 198
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.38 E-value=0.00014 Score=63.18 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=32.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
...++|.|+||+||||+|+++++.+...+.++.+++...+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY 86 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGC
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccc
Confidence 3579999999999999999999998654456777765443
No 199
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.38 E-value=0.00043 Score=60.69 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=29.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG 58 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~ 58 (272)
+..|.++++.|+||+||||+++++++.+ +.++..++.
T Consensus 45 ~~~~~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~ 81 (324)
T 3u61_B 45 GKIPHIILHSPSPGTGKTTVAKALCHDV---NADMMFVNG 81 (324)
T ss_dssp TCCCSEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEET
T ss_pred CCCCeEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEcc
Confidence 4556788999999999999999999998 445555553
No 200
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.37 E-value=0.00017 Score=63.96 Aligned_cols=36 Identities=28% Similarity=0.320 Sum_probs=28.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG 58 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~ 58 (272)
.++..++|.|+||+||||+++.++..+ +.++....+
T Consensus 49 ~~~~~~ll~Gp~G~GKTTLa~~ia~~l---~~~~~~~sg 84 (334)
T 1in4_A 49 EVLDHVLLAGPPGLGKTTLAHIIASEL---QTNIHVTSG 84 (334)
T ss_dssp CCCCCEEEESSTTSSHHHHHHHHHHHH---TCCEEEEET
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEec
Confidence 345679999999999999999999998 445444443
No 201
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.37 E-value=0.0015 Score=60.16 Aligned_cols=40 Identities=13% Similarity=0.145 Sum_probs=34.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHH-cCCCEEEecCc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIA-QGIPAYALDGD 59 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~-~g~~~~~ld~D 59 (272)
+++.+++|.|.||+||||++..++..... .|.++.+++.+
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 46789999999999999999999988765 47788888865
No 202
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.37 E-value=0.00023 Score=65.44 Aligned_cols=43 Identities=23% Similarity=0.390 Sum_probs=38.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
+|.+|.++|++||||||++..|+..+...|..+..++.|..+.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~ 139 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRP 139 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCc
Confidence 6789999999999999999999999988888999999987653
No 203
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.37 E-value=0.00017 Score=63.60 Aligned_cols=39 Identities=15% Similarity=0.332 Sum_probs=31.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
.++.-|+|.|+||+|||++|+++++.+ +.+++.++...+
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v~~~~l 87 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDL 87 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEEEHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEEchHHH
Confidence 356789999999999999999999998 556666655433
No 204
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.36 E-value=0.00013 Score=62.96 Aligned_cols=34 Identities=26% Similarity=0.485 Sum_probs=28.2
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 25 LLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 25 I~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
++|.|+|||||||++++|+..+ +.+.+.+++..+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~---~~~~i~i~g~~l 80 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANES---GLNFISVKGPEL 80 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHT---TCEEEEEETTTT
T ss_pred EEEECCCCCcHHHHHHHHHHHc---CCCEEEEEcHHH
Confidence 9999999999999999999987 445666766544
No 205
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.35 E-value=0.00019 Score=64.20 Aligned_cols=40 Identities=25% Similarity=0.317 Sum_probs=32.9
Q ss_pred cCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHc--------CCCEEEec
Q psy17388 18 EGQSNICLLFPGLSGAGKTSISFQIESYLIAQ--------GIPAYALD 57 (272)
Q Consensus 18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~--------g~~~~~ld 57 (272)
.+..+..++|.|++|+||||+++++++.+... +..+.+++
T Consensus 41 ~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 41 KNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp TTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 45567799999999999999999999988554 56666666
No 206
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.34 E-value=8.4e-05 Score=57.73 Aligned_cols=39 Identities=10% Similarity=0.100 Sum_probs=29.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD 59 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D 59 (272)
..+..|+|.|+||+|||++|+++++.....+.+++ ++..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~ 60 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YREL 60 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEEC
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECC
Confidence 34456899999999999999999987644455555 5543
No 207
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.33 E-value=0.00015 Score=63.97 Aligned_cols=43 Identities=12% Similarity=0.101 Sum_probs=33.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHc-C-CCEEEecCccc
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQ-G-IPAYALDGDNL 61 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~-g-~~~~~ld~D~i 61 (272)
..+|.+|.|.|++||||||+++.|+..+... | ..+.++..|.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF 131 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence 3678999999999999999999999988642 2 24555555543
No 208
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=97.33 E-value=0.00033 Score=61.88 Aligned_cols=38 Identities=24% Similarity=0.392 Sum_probs=36.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
.+++++|..|+||||+|..|+..+...|.++..+|.|-
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 68899999999999999999999999999999999996
No 209
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.32 E-value=0.00012 Score=60.36 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.+..|+|+|++||||||+|.+|+++.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 56789999999999999999999885
No 210
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.31 E-value=0.0002 Score=58.94 Aligned_cols=42 Identities=19% Similarity=0.108 Sum_probs=29.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH-----HcC-CCEEEecCccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLI-----AQG-IPAYALDGDNL 61 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~-----~~g-~~~~~ld~D~i 61 (272)
..+++++++|+||||||++|..+..... ..| .++++..-|.+
T Consensus 3 ~~~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL 50 (199)
T 2r2a_A 3 AMAEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGL 50 (199)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTB
T ss_pred cceeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCc
Confidence 4567999999999999999988755442 345 56666655544
No 211
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.30 E-value=0.00017 Score=64.59 Aligned_cols=35 Identities=26% Similarity=0.420 Sum_probs=29.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG 58 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~ 58 (272)
++..|+|.|+||+||||+|++|++.+ +.+++.++.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~---~~~~~~~~~ 84 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL---DVPFTMADA 84 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEech
Confidence 45679999999999999999999998 566666654
No 212
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.30 E-value=0.00015 Score=66.86 Aligned_cols=39 Identities=21% Similarity=0.377 Sum_probs=31.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR 62 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~ 62 (272)
++..|+|.|+||+||||+|++|++.+ +.++..++...+.
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l---~~~~~~v~~~~~~ 87 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEATKFT 87 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEGGGGC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHc---CCCceeecchhhc
Confidence 45679999999999999999999998 6677777654443
No 213
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.29 E-value=0.0004 Score=62.11 Aligned_cols=40 Identities=23% Similarity=0.227 Sum_probs=32.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD 59 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D 59 (272)
.++.+|.|+|+|||||||+.++|...+...+..+.++..|
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeec
Confidence 3478999999999999999999999886666666666554
No 214
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.29 E-value=0.0001 Score=66.01 Aligned_cols=27 Identities=22% Similarity=0.561 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
....|+|.|+|||||||+++.|++.+.
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 345699999999999999999999983
No 215
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.29 E-value=0.00013 Score=60.01 Aligned_cols=27 Identities=15% Similarity=0.293 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.++.|.|++||||||+.+.|+..+
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 578899999999999999999999876
No 216
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.29 E-value=0.00022 Score=63.44 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=33.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHc---CCCEEEecC
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQ---GIPAYALDG 58 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~---g~~~~~ld~ 58 (272)
+..+..++|.|++|+||||+++.+++.+... +..+.+++.
T Consensus 42 ~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~ 84 (386)
T 2qby_A 42 EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT 84 (386)
T ss_dssp TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC
Confidence 4567789999999999999999999988654 566777763
No 217
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.28 E-value=0.0003 Score=61.81 Aligned_cols=40 Identities=20% Similarity=0.218 Sum_probs=34.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCCEEEecCccc
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLI-AQGIPAYALDGDNL 61 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~-~~g~~~~~ld~D~i 61 (272)
+..++|.|++|+|||++|++++..+. ..|.++.++....+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l 192 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSF 192 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHH
Confidence 56899999999999999999999998 78888877765443
No 218
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.28 E-value=0.00029 Score=63.04 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=35.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
++.++.|.|+|||||||++..++......|.++.|++.+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 6789999999999999999999988776777899999764
No 219
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.27 E-value=0.00032 Score=62.95 Aligned_cols=40 Identities=18% Similarity=0.260 Sum_probs=35.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
++.++.|.|.||+||||+|..++..+...|.++.|+|.+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~ 101 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 101 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 6789999999999999999999988877788899999854
No 220
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.26 E-value=0.00019 Score=63.92 Aligned_cols=41 Identities=24% Similarity=0.334 Sum_probs=32.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHc------CCCEEEecCc
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQ------GIPAYALDGD 59 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~------g~~~~~ld~D 59 (272)
+..+..++|.|++|+||||+++.+++.+... +..+.+++..
T Consensus 41 ~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 41 GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 4567789999999999999999999988543 4556666643
No 221
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.00018 Score=63.55 Aligned_cols=35 Identities=14% Similarity=0.080 Sum_probs=30.3
Q ss_pred hhhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy17388 14 RDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIA 48 (272)
Q Consensus 14 r~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~ 48 (272)
+..+.+.+|..++|.|+||+|||++++.+++.|..
T Consensus 37 ~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 37 YDSLMSSQNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp HHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 44555678889999999999999999999999964
No 222
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.24 E-value=0.00021 Score=64.21 Aligned_cols=37 Identities=30% Similarity=0.424 Sum_probs=30.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
.+..|+|.|+||+||||+|+++++.+ +.+++.++...
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l---~~~~~~~~~~~ 107 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHL---DIPIAISDATS 107 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEGGG
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHh---CCCEEEecchh
Confidence 45578999999999999999999998 66777666543
No 223
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.24 E-value=0.00024 Score=62.82 Aligned_cols=40 Identities=15% Similarity=0.252 Sum_probs=31.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
.++.-|+|.|+||+|||++|+++++.+. +.++..++...+
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~~--~~~~~~i~~~~l 82 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDL 82 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTT--SCEEEEEECCSS
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHcC--CCcEEEEEhHHH
Confidence 3457899999999999999999999873 445666665544
No 224
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.24 E-value=0.0022 Score=59.25 Aligned_cols=40 Identities=13% Similarity=0.174 Sum_probs=34.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHH-cCCCEEEecCc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIA-QGIPAYALDGD 59 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~-~g~~~~~ld~D 59 (272)
.++.+++|.|.||+||||++..++..+.. .|.++.+++.+
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 46789999999999999999999998765 47788888765
No 225
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.24 E-value=0.00015 Score=60.41 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.+|.++.|.|++||||||+.+.|+..+
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 467899999999999999999999876
No 226
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.23 E-value=0.0022 Score=59.14 Aligned_cols=40 Identities=10% Similarity=0.082 Sum_probs=35.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD 59 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D 59 (272)
+++.+++|.|.||+||||++..++......|.++.+++.+
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 4678999999999999999999999887678888888865
No 227
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.23 E-value=0.0002 Score=57.79 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
+.+.|.|++||||||+.+.|+..+
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999988
No 228
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.22 E-value=0.00022 Score=63.90 Aligned_cols=39 Identities=28% Similarity=0.357 Sum_probs=32.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
.++..|+|.|+||+||||+|+++++.+ +.+++.++...+
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~~~l 153 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS---GATFFSISASSL 153 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEGGGG
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEehHHh
Confidence 456789999999999999999999987 666777765544
No 229
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.21 E-value=0.0003 Score=62.88 Aligned_cols=40 Identities=15% Similarity=0.123 Sum_probs=32.2
Q ss_pred CCCCe--EEEEEcCCCCCHHHHHHHHHHHHHHc-CCCEEEecC
Q psy17388 19 GQSNI--CLLFPGLSGAGKTSISFQIESYLIAQ-GIPAYALDG 58 (272)
Q Consensus 19 ~~~~~--lI~l~G~~GsGKSTlAr~La~~L~~~-g~~~~~ld~ 58 (272)
+..+. .++|+|++|+||||+++.+++.+... +..+.+++.
T Consensus 39 ~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~ 81 (389)
T 1fnn_A 39 NPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYING 81 (389)
T ss_dssp STTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEET
T ss_pred CCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeC
Confidence 34555 89999999999999999999998655 456777763
No 230
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.21 E-value=0.00042 Score=59.49 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=31.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCEEEecCccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQ-GIPAYALDGDNL 61 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~-g~~~~~ld~D~i 61 (272)
.++.++.|+|++||||||+.+.|...+... . ..+.++.+.+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~-G~I~~~g~~i 64 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKS-YHIITIEDPI 64 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCC-CEEEEEESSC
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCC-CEEEEcCCcc
Confidence 577899999999999999999999988643 2 2334444443
No 231
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.20 E-value=0.00011 Score=62.70 Aligned_cols=38 Identities=21% Similarity=0.412 Sum_probs=29.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR 62 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~ 62 (272)
+.-++|.|+||+||||+|+++++.+ +.+++.++...+.
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~~~ 81 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEA---HVPFFSMGGSSFI 81 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHH---TCCCCCCCSCTTT
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCCEEEechHHHH
Confidence 4458899999999999999999998 5556555554443
No 232
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=97.20 E-value=0.00016 Score=58.57 Aligned_cols=33 Identities=12% Similarity=0.116 Sum_probs=27.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
+|+++|.+||||||+|..|+.. |.++.|+++..
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~~ 33 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD----APQVLYIATSQ 33 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS----CSSEEEEECCC
T ss_pred CEEEECCCCCcHHHHHHHHHhc----CCCeEEEecCC
Confidence 3789999999999999999865 45788888753
No 233
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.20 E-value=0.00029 Score=58.20 Aligned_cols=41 Identities=17% Similarity=0.188 Sum_probs=30.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHH------cCCCEEEecCcc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIA------QGIPAYALDGDN 60 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~------~g~~~~~ld~D~ 60 (272)
.++.++.|.|++||||||+++.|+..+.. .+....+++.+.
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 36789999999999999999999975421 122366777654
No 234
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.18 E-value=0.00029 Score=63.07 Aligned_cols=39 Identities=15% Similarity=0.332 Sum_probs=30.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
.++.-|+|.|+||+||||+|+++++.+ +.+++.++...+
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~---~~~~~~v~~~~l 120 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDL 120 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH---TCEEEEEEHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh---CCCEEEeeHHHH
Confidence 345568999999999999999999998 556666654433
No 235
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.18 E-value=0.00063 Score=56.58 Aligned_cols=37 Identities=14% Similarity=-0.052 Sum_probs=33.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYAL 56 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~l 56 (272)
.++.+.+++|+|||||||.+-.++.+...+|.++.++
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~ 62 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVF 62 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 5688999999999999999999999998888888766
No 236
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=97.17 E-value=0.00056 Score=59.81 Aligned_cols=45 Identities=22% Similarity=0.290 Sum_probs=38.1
Q ss_pred CCCCeEEEEEcC-CCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 19 GQSNICLLFPGL-SGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 19 ~~~~~lI~l~G~-~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
..++++|+|+|. +|+||||+|..|+..+...|.++..+|.|.-..
T Consensus 101 ~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~~ 146 (299)
T 3cio_A 101 ETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRG 146 (299)
T ss_dssp SCSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTTC
T ss_pred CCCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCCc
Confidence 345678888876 899999999999999998999999999986433
No 237
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.17 E-value=0.00027 Score=55.96 Aligned_cols=28 Identities=25% Similarity=0.300 Sum_probs=25.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
.++.++.|.|+.||||||+.+.|+..++
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l~ 58 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhCC
Confidence 6788999999999999999999999873
No 238
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.16 E-value=0.00037 Score=64.52 Aligned_cols=40 Identities=25% Similarity=0.481 Sum_probs=30.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
+|.-++|.|+||+|||++|+++++.++. ..+++.++.-.+
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~~-~~~~~~~~~~~~ 101 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELGS-KVPFCPMVGSEV 101 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHCT-TSCEEEEEGGGG
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhCC-CceEEEEeHHHH
Confidence 4577999999999999999999999821 156666665443
No 239
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=97.15 E-value=0.0026 Score=55.54 Aligned_cols=95 Identities=16% Similarity=0.135 Sum_probs=48.9
Q ss_pred HHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCC-HHHHHHhhhhhhhhhhhhccccccccccccCCCC
Q psy17388 87 AKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTP-VEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAP 165 (272)
Q Consensus 87 ~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~-~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~ 165 (272)
+...+++|..||.+. ... .++.+....-.+ +.||+..| .+++.+ +.+|.....-.............+ .
T Consensus 187 V~~~~~~G~~vildi-d~~-----g~~~l~~~~~~p-i~IfI~pps~~~L~~-L~~R~t~~~i~~rl~~a~~~e~~~--~ 256 (295)
T 1kjw_A 187 VREVAEQGKHCILDV-SAN-----AVRRLQAAHLHP-IAIFIRPRSLENVLE-INKRITEEQARKAFDRATKLEQEF--T 256 (295)
T ss_dssp HHHHHHTTCEEEECC-CTT-----HHHHHHHTTCCC-EEEEECCSSHHHHHH-HCTTSCHHHHHHHHHHHHHHHHHH--G
T ss_pred HHHHHhcCCeEEEEe-CHH-----HHHHHHhcccCC-eEEEEECCCHHHHHH-HHhcCCHHHHHHHHHHHHHHHHhc--c
Confidence 455677899999874 221 111111111224 67899876 677666 654431110000000000000011 1
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388 166 KNPDLILETVNVPVEKCANSVLDMIAAK 193 (272)
Q Consensus 166 ~~~~~~Idt~~~~~ee~~~~I~~~L~~~ 193 (272)
...+.+|+++ +++++++++.+.|...
T Consensus 257 ~~fd~vivNd--~le~a~~~l~~ii~~~ 282 (295)
T 1kjw_A 257 ECFSAIVEGD--SFEEIYHKVKRVIEDL 282 (295)
T ss_dssp GGCSEEECCS--SHHHHHHHHHHHHHHH
T ss_pred ccCeEEEECc--CHHHHHHHHHHHHHhc
Confidence 2346777764 7999999999998754
No 240
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.14 E-value=0.00032 Score=61.83 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=29.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD 59 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D 59 (272)
.++..|+|+|+||+||||+|+++++.+ +.++..++..
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~~~---~~~~~~~~~~ 89 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISYEM---SANIKTTAAP 89 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHHHT---TCCEEEEEGG
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEecch
Confidence 445578999999999999999999987 5566666543
No 241
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=97.14 E-value=0.00068 Score=58.42 Aligned_cols=44 Identities=20% Similarity=0.342 Sum_probs=37.5
Q ss_pred CCCeEEEEEcC-CCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 20 QSNICLLFPGL-SGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 20 ~~~~lI~l~G~-~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
.++++|.|+|. +|+||||+|..|+..+...|.++.++|.|.-+.
T Consensus 80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~~ 124 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKP 124 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSSC
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCc
Confidence 45678888865 899999999999999999999999999995443
No 242
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.13 E-value=0.00036 Score=63.10 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=32.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR 62 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~ 62 (272)
.++..|+|.|+||+|||++|++++..+ +.+++.++...+.
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~---~~~~~~v~~~~l~ 185 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES---NATFFNISAASLT 185 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT---TCEEEEECSCCC-
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh---cCcEEEeeHHHhh
Confidence 346789999999999999999999987 6677777765543
No 243
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.12 E-value=0.00062 Score=60.59 Aligned_cols=42 Identities=24% Similarity=0.309 Sum_probs=35.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
..++.+|.|+|.+|+||||+.+.|+..+...|..+..++.|.
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 467889999999999999999999998877777777777664
No 244
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.12 E-value=0.00035 Score=59.12 Aligned_cols=34 Identities=24% Similarity=0.428 Sum_probs=27.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
-++|.|+||+||||++++++..+ +.+.+.++...
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~---~~~~i~~~~~~ 84 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEA---RVPFITASGSD 84 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCCEEEeeHHH
Confidence 38999999999999999999887 44566665443
No 245
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.11 E-value=0.00051 Score=63.99 Aligned_cols=39 Identities=21% Similarity=0.416 Sum_probs=31.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR 62 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~ 62 (272)
.|.-|+|.|+||+||||+|++++..+ +.+++.++...+.
T Consensus 48 ~p~gvLL~GppGtGKT~Laraia~~~---~~~f~~is~~~~~ 86 (476)
T 2ce7_A 48 MPKGILLVGPPGTGKTLLARAVAGEA---NVPFFHISGSDFV 86 (476)
T ss_dssp CCSEEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGGTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc---CCCeeeCCHHHHH
Confidence 45568999999999999999999988 6677777655443
No 246
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.10 E-value=0.00032 Score=56.37 Aligned_cols=31 Identities=26% Similarity=0.404 Sum_probs=26.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCE
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPA 53 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~ 53 (272)
.+|.|+|++||||||+++.|...+...|+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~ 33 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRV 33 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCce
Confidence 4789999999999999999999997665443
No 247
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=97.10 E-value=0.00054 Score=60.95 Aligned_cols=42 Identities=24% Similarity=0.266 Sum_probs=37.7
Q ss_pred cCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388 18 EGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD 59 (272)
Q Consensus 18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D 59 (272)
......+++++|..|+||||+|..|+..+...|.++..+|.|
T Consensus 12 ~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D 53 (334)
T 3iqw_A 12 DQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTD 53 (334)
T ss_dssp HCTTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECC
T ss_pred cCCCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 334467899999999999999999999999889999999998
No 248
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.09 E-value=0.00046 Score=64.94 Aligned_cols=37 Identities=19% Similarity=0.274 Sum_probs=31.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
.+..++|+|+||+||||+|+++++.+ |+++..++...
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l---~~~~i~in~s~ 112 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNASD 112 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEeCCC
Confidence 44689999999999999999999998 66777776543
No 249
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.08 E-value=0.00039 Score=58.01 Aligned_cols=41 Identities=17% Similarity=0.079 Sum_probs=31.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHH------cCCCEEEecCcc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIA------QGIPAYALDGDN 60 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~------~g~~~~~ld~D~ 60 (272)
.++.++.|.|++||||||+++.++..... .+.++.+++.+.
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 36789999999999999999999985211 134677887654
No 250
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.08 E-value=0.0004 Score=57.10 Aligned_cols=28 Identities=36% Similarity=0.445 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
..+..++|.|++|+||||+++.+++.+.
T Consensus 43 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 43 RIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3456899999999999999999999885
No 251
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.08 E-value=0.0037 Score=58.42 Aligned_cols=41 Identities=10% Similarity=-0.074 Sum_probs=35.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCEEEecCcc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQ-GIPAYALDGDN 60 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~-g~~~~~ld~D~ 60 (272)
.++.+++|.|.||+||||++..++...... |.++.+++.+.
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~ 281 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE 281 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC
Confidence 467899999999999999999999988655 77898888753
No 252
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=97.08 E-value=0.00085 Score=59.95 Aligned_cols=41 Identities=27% Similarity=0.488 Sum_probs=37.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
....+++++|..|+||||+|..|+..+...|.++..+|.|-
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 64 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP 64 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 34567888899999999999999999999999999999986
No 253
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.07 E-value=0.0003 Score=59.93 Aligned_cols=42 Identities=21% Similarity=0.184 Sum_probs=32.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
..+..|+|.|+||+|||++|+++++.+...+.++++++...+
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~ 68 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL 68 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGS
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCC
Confidence 344568999999999999999999987544556777765433
No 254
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.06 E-value=0.00065 Score=61.21 Aligned_cols=40 Identities=18% Similarity=0.196 Sum_probs=35.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
++.++.|.|+||+||||+|..++......|.++.|+|.+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 6789999999999999999999988776778899999875
No 255
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.06 E-value=0.00041 Score=60.58 Aligned_cols=37 Identities=30% Similarity=0.394 Sum_probs=30.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD 59 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D 59 (272)
..+..++|+|++|+||||+|+++++.+ +.++.+++..
T Consensus 36 ~~~~~vll~G~~GtGKT~la~~i~~~~---~~~~~~~~~~ 72 (324)
T 1hqc_A 36 EPLEHLLLFGPPGLGKTTLAHVIAHEL---GVNLRVTSGP 72 (324)
T ss_dssp SCCCCCEEECCTTCCCHHHHHHHHHHH---TCCEEEECTT
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHh---CCCEEEEecc
Confidence 345678999999999999999999988 5566666544
No 256
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.02 E-value=0.0008 Score=66.44 Aligned_cols=39 Identities=23% Similarity=0.380 Sum_probs=32.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
.+|+-|+|.|+||+|||++|++++..+ |.+++.++...+
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~el---g~~~~~v~~~~l 274 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEI 274 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTT---TCEEEEEEHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHh---CCeEEEEEhHHh
Confidence 467889999999999999999999988 667777765444
No 257
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.02 E-value=0.00079 Score=59.91 Aligned_cols=41 Identities=27% Similarity=0.291 Sum_probs=33.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD 59 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D 59 (272)
-.++.++.|.|+|||||||+.+.|...+...+..+.+...|
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d 92 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVD 92 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEc
Confidence 36788999999999999999999998886655566655544
No 258
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.01 E-value=0.00065 Score=60.06 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=28.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG 58 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~ 58 (272)
++.+++|.|+||+||||+|.+++... |.++.|++.
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~~---G~~VlyIs~ 156 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEAL---GGKDKYATV 156 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHHH---HTTSCCEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhC---CCCEEEEEe
Confidence 45678999999999999999999872 446666665
No 259
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.00 E-value=0.00081 Score=57.85 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
++.++.|.|++||||||++..++..+.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 678999999999999999999998664
No 260
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=97.00 E-value=0.00054 Score=55.11 Aligned_cols=35 Identities=20% Similarity=0.356 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
.+.-|+|+|.||+||||+|.+|.++ | ..++..|.+
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r----G--~~lvaDD~v 49 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR----G--HQLVCDDVI 49 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT----T--CEEEESSEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc----C--CeEecCCEE
Confidence 4567999999999999999999985 4 344555543
No 261
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=96.98 E-value=0.00093 Score=59.18 Aligned_cols=40 Identities=20% Similarity=0.224 Sum_probs=36.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
...+++++|..|+||||+|..|+..+...|.++..+|.|.
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~ 57 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDP 57 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCT
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 3568889999999999999999999999999999999985
No 262
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=96.97 E-value=0.001 Score=57.80 Aligned_cols=44 Identities=16% Similarity=0.224 Sum_probs=36.4
Q ss_pred CCCeEEEEEc-CCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 20 QSNICLLFPG-LSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 20 ~~~~lI~l~G-~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
.++++|+|+| .+|+||||+|..|+..+...|.++..+|.|.-+.
T Consensus 90 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~ 134 (286)
T 3la6_A 90 AQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKG 134 (286)
T ss_dssp TTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTC
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCC
Confidence 4556666664 6899999999999999998899999999996443
No 263
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=96.97 E-value=0.00041 Score=58.02 Aligned_cols=36 Identities=31% Similarity=0.472 Sum_probs=33.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 25 LLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 25 I~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
|.++|..|+||||++..|+..|...|.++..+|.|.
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 38 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDP 38 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 566999999999999999999998899999999986
No 264
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.97 E-value=0.00057 Score=58.74 Aligned_cols=33 Identities=24% Similarity=0.418 Sum_probs=26.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD 59 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D 59 (272)
-++|.|+|||||||++++++..+ +.+.+.++..
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~---~~~~i~~~~~ 107 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEA---RVPFITASGS 107 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEHH
T ss_pred eEEEECCCcChHHHHHHHHHHHc---CCCEEEecHH
Confidence 38999999999999999999987 3455556543
No 265
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=96.96 E-value=0.0013 Score=56.06 Aligned_cols=41 Identities=24% Similarity=0.319 Sum_probs=34.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR 62 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~ 62 (272)
..+.+..+-.|+||||+|..|+..|...|.++.++|.|.-.
T Consensus 19 ~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~ 59 (262)
T 2ph1_A 19 SRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLG 59 (262)
T ss_dssp CEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 34445567889999999999999999899999999998654
No 266
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.95 E-value=0.00072 Score=62.36 Aligned_cols=39 Identities=21% Similarity=0.320 Sum_probs=32.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEecCcc
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQ--GIPAYALDGDN 60 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~--g~~~~~ld~D~ 60 (272)
+..++|.|+||+||||++++++..+... +.++.+++...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~ 170 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 5679999999999999999999988654 56677776544
No 267
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.95 E-value=0.00055 Score=60.13 Aligned_cols=27 Identities=26% Similarity=0.509 Sum_probs=25.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.++.|.|++||||||+++.|...+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 578899999999999999999999987
No 268
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.94 E-value=0.00063 Score=55.94 Aligned_cols=39 Identities=21% Similarity=0.234 Sum_probs=29.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD 59 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D 59 (272)
.+...|+|+|.+||||||+...|...+... ..+..++.|
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d 66 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGD 66 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECS
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecC
Confidence 355789999999999999999999887432 345556554
No 269
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.93 E-value=0.001 Score=55.54 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=31.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH-HHHcCCCEEEecCc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESY-LIAQGIPAYALDGD 59 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~-L~~~g~~~~~ld~D 59 (272)
.++.+++|.|.||+||||+|..++.. ....|.++.+++.+
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 36789999999999999999988754 33346678887765
No 270
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.93 E-value=0.00058 Score=61.78 Aligned_cols=28 Identities=21% Similarity=0.247 Sum_probs=25.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
-.++.+|.|.|+|||||||+++.|+..+
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3567899999999999999999999877
No 271
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.91 E-value=0.00046 Score=58.22 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.++.|.|++||||||+.+.|+-.+
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 578899999999999999999998765
No 272
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=96.91 E-value=0.0011 Score=59.43 Aligned_cols=41 Identities=20% Similarity=0.252 Sum_probs=37.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCCCEEEecCcc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLI--AQGIPAYALDGDN 60 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~--~~g~~~~~ld~D~ 60 (272)
....+++++|..|+||||+|..|+..|. ..|.++..+|.|.
T Consensus 16 ~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~ 58 (354)
T 2woj_A 16 TTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDP 58 (354)
T ss_dssp SSCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 3456888899999999999999999999 8899999999996
No 273
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=96.90 E-value=0.0011 Score=59.16 Aligned_cols=42 Identities=21% Similarity=0.233 Sum_probs=37.6
Q ss_pred cCCCCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCCCEEEecCc
Q psy17388 18 EGQSNICLLFPGLSGAGKTSISFQIESYLI--AQGIPAYALDGD 59 (272)
Q Consensus 18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~--~~g~~~~~ld~D 59 (272)
......+++++|..|+||||+|..|+..+. ..|.++..+|.|
T Consensus 14 ~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D 57 (348)
T 3io3_A 14 QHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTD 57 (348)
T ss_dssp TCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred cCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 334458999999999999999999999998 789999999998
No 274
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.89 E-value=0.00058 Score=63.15 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=29.9
Q ss_pred hhhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388 14 RDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD 57 (272)
Q Consensus 14 r~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld 57 (272)
+..+...+...++|.|+||+||||+|+.+++.+ +.++..++
T Consensus 42 ~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~---~~~f~~l~ 82 (447)
T 3pvs_A 42 PRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA---NADVERIS 82 (447)
T ss_dssp HHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT---TCEEEEEE
T ss_pred HHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh---CCCeEEEE
Confidence 333433444579999999999999999999988 44444443
No 275
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.88 E-value=0.00069 Score=60.27 Aligned_cols=27 Identities=30% Similarity=0.475 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
++..++|.|+||+||||+|+++++.+.
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 347899999999999999999999983
No 276
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=96.88 E-value=0.0012 Score=63.10 Aligned_cols=41 Identities=34% Similarity=0.395 Sum_probs=37.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
..+++++++|..|+||||+|-.|+..+...|.++.++|.|-
T Consensus 6 ~~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~ 46 (589)
T 1ihu_A 6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP 46 (589)
T ss_dssp SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 45578999999999999999999999999999999999994
No 277
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=96.88 E-value=0.0011 Score=57.27 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=35.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
++|.++|-.|+||||+|..|+..|...|.++..+|.|.-
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q 41 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPK 41 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 467778999999999999999999989999999998853
No 278
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.87 E-value=0.00097 Score=63.17 Aligned_cols=35 Identities=29% Similarity=0.316 Sum_probs=28.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG 58 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~ 58 (272)
++.+++|.|+||+||||+|++++..+ +.+...++.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l---~~~~~~i~~ 141 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL---GRKFVRISL 141 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH---TCEEEEECC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc---CCCeEEEEe
Confidence 57799999999999999999999998 444444543
No 279
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=96.86 E-value=0.0011 Score=56.47 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=34.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
++|.++|-.|+||||++..|+..|...|.++..+|.|.-
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q 40 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCC
Confidence 467778999999999999999999988999999998843
No 280
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.85 E-value=0.00071 Score=62.46 Aligned_cols=40 Identities=15% Similarity=0.252 Sum_probs=30.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
.++.-|+|.|+||+|||++|++++..+. +.+++.++...+
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~~--~~~~~~v~~~~l 204 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDL 204 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHCC--SSEEEEECCC--
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC--CCCEEEEeHHHH
Confidence 3457899999999999999999999872 345666665544
No 281
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.84 E-value=0.00057 Score=56.55 Aligned_cols=24 Identities=25% Similarity=0.603 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
..|+|.|+||+||||+|.+|++.+
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 569999999999999999999998
No 282
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.83 E-value=0.0008 Score=59.38 Aligned_cols=40 Identities=23% Similarity=0.244 Sum_probs=32.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc------CCCEEEecCcc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQ------GIPAYALDGDN 60 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~------g~~~~~ld~D~ 60 (272)
++.++.|.|+|||||||++..++...... +.++.|++.+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 67899999999999999999999864322 45788888775
No 283
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.81 E-value=0.0011 Score=59.12 Aligned_cols=41 Identities=22% Similarity=0.088 Sum_probs=32.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHH------cCCCEEEecCcc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIA------QGIPAYALDGDN 60 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~------~g~~~~~ld~D~ 60 (272)
.++.++.|.|+|||||||++..++..... .+.++.|++.+.
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 46789999999999999999999986321 255788888765
No 284
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.81 E-value=0.00057 Score=57.20 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.++.|.|++||||||+.+.|+-.+
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999998655
No 285
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.79 E-value=0.00071 Score=55.14 Aligned_cols=28 Identities=25% Similarity=0.455 Sum_probs=24.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcC
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQG 50 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g 50 (272)
.++.|.|++||||||+.+.|+..+...|
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCChHHHHHHHHHhhcccCC
Confidence 4689999999999999999999886555
No 286
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.79 E-value=0.00065 Score=57.35 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.++.|.|++||||||+.+.|+..+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 477899999999999999999998765
No 287
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.78 E-value=0.00085 Score=59.14 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=22.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
.++|.|+||+||||+++++++.+.
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999874
No 288
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.78 E-value=0.0014 Score=59.03 Aligned_cols=30 Identities=20% Similarity=0.336 Sum_probs=26.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQ 49 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~ 49 (272)
.++.+|+|+|++||||||+.+.|...+...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 567899999999999999999999988654
No 289
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.76 E-value=0.00077 Score=57.06 Aligned_cols=27 Identities=37% Similarity=0.586 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.++.|.|++||||||+.+.|+-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 578899999999999999999998765
No 290
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.74 E-value=0.001 Score=61.73 Aligned_cols=29 Identities=24% Similarity=0.351 Sum_probs=25.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIA 48 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~ 48 (272)
..+..++|.|+||+||||+|+.|++.+..
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 44557899999999999999999999853
No 291
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.74 E-value=0.0013 Score=61.63 Aligned_cols=37 Identities=22% Similarity=0.384 Sum_probs=29.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
|.-|+|.|+||+||||++++++..+ +.++++++...+
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~~---~~~~i~i~g~~~ 100 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDF 100 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHT---TCCEEEEEGGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEehhHH
Confidence 4449999999999999999999887 556777775443
No 292
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.74 E-value=0.002 Score=54.11 Aligned_cols=39 Identities=8% Similarity=-0.003 Sum_probs=32.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD 57 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld 57 (272)
.+.+.+.+++|+|||||||-+-.++.+...+|.++.++-
T Consensus 16 ~~~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k 54 (234)
T 2orv_A 16 KTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 54 (234)
T ss_dssp --CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 356899999999999999999999988888888877653
No 293
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.73 E-value=0.0011 Score=62.00 Aligned_cols=39 Identities=23% Similarity=0.380 Sum_probs=31.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
.++.-|+|.|+||+|||++|++++..+ +.+++.++...+
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~vn~~~l 274 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEI 274 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHC---SSEEEEEEHHHH
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHh---CCCEEEEEchHh
Confidence 456679999999999999999999987 556766665444
No 294
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.73 E-value=0.00085 Score=59.37 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
+. ++|.|++|+||||+++.++..+
T Consensus 37 ~~-~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 37 PH-LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred Ce-EEEECCCCCCHHHHHHHHHHHH
Confidence 44 9999999999999999999976
No 295
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.72 E-value=0.0012 Score=58.94 Aligned_cols=41 Identities=17% Similarity=0.215 Sum_probs=32.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHH---c---CCCEEEecCcc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIA---Q---GIPAYALDGDN 60 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~---~---g~~~~~ld~D~ 60 (272)
.++.++.|.|++||||||+++.++..... . |..+.++|+..
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 37889999999999999999999987521 1 23567888754
No 296
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.72 E-value=0.001 Score=54.86 Aligned_cols=37 Identities=19% Similarity=0.242 Sum_probs=27.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD 57 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld 57 (272)
.+...|+|.|.+||||||+...|...+... ..+..++
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~ 72 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIA 72 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEE
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEE
Confidence 456788999999999999999999886322 2344444
No 297
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=96.72 E-value=0.0013 Score=55.84 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=34.5
Q ss_pred CCeEEEEE-cCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 21 SNICLLFP-GLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 21 ~~~lI~l~-G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
++++|.++ +-.|+||||++..|+..|...|.++.++|.|.
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 45 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDP 45 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCC
Confidence 44566665 77899999999999999998999999999885
No 298
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.71 E-value=0.0008 Score=57.71 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.++.|.|++||||||+.+.|+-.+
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 478899999999999999999998765
No 299
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.71 E-value=0.00075 Score=58.03 Aligned_cols=41 Identities=29% Similarity=0.363 Sum_probs=29.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
.++.++.|.|++||||||+.+.|+-.+... .+.+.+++..+
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~-~G~I~~~g~~~ 75 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYLSPS-HGECHLLGQNL 75 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSSCCS-SCEEEETTEET
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CcEEEECCEEC
Confidence 467899999999999999999999765321 13445555443
No 300
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.70 E-value=0.00075 Score=58.36 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.+|.++.|.|++||||||+.+.|+-.+
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 467899999999999999999998765
No 301
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.69 E-value=0.00097 Score=58.99 Aligned_cols=23 Identities=39% Similarity=0.548 Sum_probs=21.9
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 25 LLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 25 I~l~G~~GsGKSTlAr~La~~L~ 47 (272)
++|.|++|+||||+++++++.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 89999999999999999999985
No 302
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.69 E-value=0.00082 Score=57.14 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.++.|.|++||||||+.+.|+-.+
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999998765
No 303
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.68 E-value=0.00099 Score=56.67 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
.++.++.|.|++||||||+.+.|+-.
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999999874
No 304
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=96.68 E-value=0.0023 Score=53.19 Aligned_cols=38 Identities=29% Similarity=0.422 Sum_probs=32.7
Q ss_pred eEEE-EEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 23 ICLL-FPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 23 ~lI~-l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
++|. ..+..|+||||++..|+..|..+|.++.++|.|.
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL 41 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence 3454 4577899999999999999998999999999985
No 305
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.68 E-value=0.002 Score=57.75 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=26.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQ 49 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~ 49 (272)
.++.+|+|+|++||||||+.+.|...+...
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCC
Confidence 455699999999999999999999988654
No 306
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.67 E-value=0.0018 Score=52.41 Aligned_cols=37 Identities=27% Similarity=0.373 Sum_probs=32.3
Q ss_pred EEEE-EcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 24 CLLF-PGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 24 lI~l-~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
+|.+ .+-.|+||||++..|+..|..+|.++.++|.|.
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~ 40 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDP 40 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 4545 477889999999999999999999999999984
No 307
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.67 E-value=0.0017 Score=57.20 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=32.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEecCcc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQ--GIPAYALDGDN 60 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~--g~~~~~ld~D~ 60 (272)
++ ++.|.|+||+||||++-.++...... |..+.|+|+..
T Consensus 28 ~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~ 68 (333)
T 3io5_A 28 SG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF 68 (333)
T ss_dssp SE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred CC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 45 89999999999999999988877554 66788999764
No 308
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.66 E-value=0.00091 Score=57.43 Aligned_cols=27 Identities=19% Similarity=0.244 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.++.|.|++||||||+.+.|+-.+
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 477899999999999999999998765
No 309
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.66 E-value=0.00092 Score=57.63 Aligned_cols=27 Identities=15% Similarity=0.324 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.++.|.|++||||||+.+.|+-.+
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999998765
No 310
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.65 E-value=0.00093 Score=57.22 Aligned_cols=38 Identities=21% Similarity=0.335 Sum_probs=28.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD 59 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D 59 (272)
.+|.++.|.|++||||||+.+.|+-.+... ..+.+++.
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--G~I~i~g~ 81 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFYDAE--GDIKIGGK 81 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSCCE--EEEEETTE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCCCC--eEEEECCE
Confidence 477899999999999999999998765311 23455543
No 311
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.65 E-value=0.0009 Score=56.17 Aligned_cols=27 Identities=37% Similarity=0.448 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.++.|.|++||||||+.+.|+-.+
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999998765
No 312
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.65 E-value=0.0011 Score=56.94 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
.++.++.|.|++||||||+.+.|+-.
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 47789999999999999999999875
No 313
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.64 E-value=0.00092 Score=56.51 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.++.|.|++||||||+.+.|+-.+
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998765
No 314
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=96.63 E-value=0.0026 Score=57.19 Aligned_cols=40 Identities=13% Similarity=0.247 Sum_probs=35.1
Q ss_pred CCCeEEEEE-cCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388 20 QSNICLLFP-GLSGAGKTSISFQIESYLIAQGIPAYALDGD 59 (272)
Q Consensus 20 ~~~~lI~l~-G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D 59 (272)
.++++|.+. |-.|+||||+|-.|+..|...|.++.++|.|
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 456677665 6999999999999999998889999999999
No 315
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.63 E-value=0.00099 Score=58.57 Aligned_cols=32 Identities=16% Similarity=0.205 Sum_probs=26.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD 57 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld 57 (272)
..++|.|+||+|||++|+++++.+ +.++..+.
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~---~~~~~~i~ 78 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTM---DLDFHRIQ 78 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh---CCCeEEEe
Confidence 468999999999999999999988 44555444
No 316
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.62 E-value=0.001 Score=56.94 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.+|.++.|.|++||||||+.+.|+-.+
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 478899999999999999999998765
No 317
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.62 E-value=0.00097 Score=56.98 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.++.|.|++||||||+.+.|+-.+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998765
No 318
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.61 E-value=0.0012 Score=57.46 Aligned_cols=27 Identities=37% Similarity=0.539 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
+...++|.|++|+||||+|+++++.+.
T Consensus 45 ~~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 45 SMPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 333499999999999999999999974
No 319
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.61 E-value=0.002 Score=58.98 Aligned_cols=41 Identities=17% Similarity=0.184 Sum_probs=30.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
.++.+|+|+|++||||||+.++|...+.....++. +..|.+
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~-~~ed~i 205 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNIL-TVEDPI 205 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEE-EEESSC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEE-Eecccc
Confidence 56789999999999999999999998854333444 334443
No 320
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.60 E-value=0.00099 Score=58.31 Aligned_cols=42 Identities=24% Similarity=0.324 Sum_probs=32.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
..+..|+|+|.||+|||++|+++.+.....+.+++.++...+
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~ 64 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAAL 64 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSC
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCC
Confidence 445568999999999999999999976444556666765443
No 321
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.60 E-value=0.00082 Score=55.91 Aligned_cols=27 Identities=33% Similarity=0.541 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.++.|.|++||||||+.+.|+-.+
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 367789999999999999999998765
No 322
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.59 E-value=0.00073 Score=55.94 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
.++.++.|.|++||||||+.+.|+-.
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35779999999999999999999977
No 323
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=96.59 E-value=0.0076 Score=52.46 Aligned_cols=96 Identities=18% Similarity=0.169 Sum_probs=52.6
Q ss_pred HHHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeC-CHHHHHHhhhhhhhhhhhhccccccccccccCCC
Q psy17388 86 CAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNT-PVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEA 164 (272)
Q Consensus 86 ~~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~-~~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~ 164 (272)
.....++.|..||.+. .+ .....++ ......+.||+.. +.+++.+|+.++....... .......+...|.
T Consensus 181 ~V~~~~~~gk~viLdi-d~--qg~~~lk----~~~~~pi~IFI~PpS~e~L~~r~~~r~~e~~~~-~~~r~~k~e~e~~- 251 (292)
T 3tvt_A 181 SVREVAEKGKHCILDV-SG--NAIKRLQ----VAQLYPVAVFIKPKSVDSVMEMNRRMTEEQAKK-TYERAIKMEQEFG- 251 (292)
T ss_dssp HHHHHHHHTCEEEECC-CT--HHHHHHH----HTTCCCEEEEECCSCHHHHHHTCTTSCTTHHHH-HHHHHHHHHHHHT-
T ss_pred HHHHHHHcCCcEEEec-cc--hhhhhcc----cccccceEEEEECCCHHHHHHHHhCCCchhHHH-HHHHHHHHHHhhh-
Confidence 3455677898999874 23 2222222 2233446788887 4788888875442111000 0000111111222
Q ss_pred CCCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388 165 PKNPDLILETVNVPVEKCANSVLDMIAAK 193 (272)
Q Consensus 165 ~~~~~~~Idt~~~~~ee~~~~I~~~L~~~ 193 (272)
...+.+|.++ ++++++++|.+.|.+.
T Consensus 252 -~~fD~vIvNd--dle~a~~~l~~iI~~e 277 (292)
T 3tvt_A 252 -EYFTGVVQGD--TIEEIYSKVKSMIWSQ 277 (292)
T ss_dssp -TTCSEEECCS--SHHHHHHHHHHHHHHH
T ss_pred -hhCCEEEECc--CHHHHHHHHHHHHHHh
Confidence 2346777654 7999999999998865
No 324
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=96.59 E-value=0.0027 Score=53.50 Aligned_cols=38 Identities=26% Similarity=0.296 Sum_probs=33.0
Q ss_pred eEEEE-EcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 23 ICLLF-PGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 23 ~lI~l-~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
++|.+ .+-.|+||||+|..|+..|..+|.++..+|.|.
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAI 41 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 44544 678899999999999999999999999999985
No 325
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=96.58 E-value=0.003 Score=53.44 Aligned_cols=37 Identities=27% Similarity=0.339 Sum_probs=32.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
+.+..+-.|+||||++-.|+..|...|.++.++|.|.
T Consensus 5 I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (263)
T 1hyq_A 5 ITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI 41 (263)
T ss_dssp EEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 4455788899999999999999998899999999885
No 326
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.58 E-value=0.0011 Score=56.93 Aligned_cols=27 Identities=26% Similarity=0.576 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.++.|.|++||||||+.+.|+-.+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 478899999999999999999998765
No 327
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=96.58 E-value=0.0032 Score=61.68 Aligned_cols=95 Identities=16% Similarity=0.105 Sum_probs=49.0
Q ss_pred HHHHHhCCCeEEEcCCCCcHHHHHHHHHHHHhCCCceEEEEEeCC-HHHHHHhhhhhhhhhhhhccccccccccccCCCC
Q psy17388 87 AKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTP-VEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAP 165 (272)
Q Consensus 87 ~~~~~~~g~~VI~d~~~~~~~~r~~~~~~~~~~g~~~~~V~L~~~-~e~~~~Rl~~r~~~~~r~~~~~~~~~~~~~ye~~ 165 (272)
++..++.|..||.+. .. . .++.+....-.+ ++||+..| .+++.+ +.+|.....-...+.....+. .+.+
T Consensus 613 v~~~~~~g~~~ildi-~~--~---~~~~l~~~~~~p-~~ifi~pps~~~L~~-l~~R~t~~~~~~rl~~a~~~e--~~~~ 682 (721)
T 2xkx_A 613 VREVAEQGKHCILDV-SA--N---AVRRLQAAHLHP-IAIFIRPRSLENVLE-INKRITEEQARKAFDRATKLE--QEFT 682 (721)
T ss_pred HHHHHHCCCcEEEeC-CH--H---HHHHHHhcccCC-EEEEEeCCcHHHHHH-HhccCCHHHHHHHHHHHHHHH--Hhcc
Confidence 455677899998874 22 1 222222111224 67899866 566655 644421110000000000001 1112
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHHHHHhC
Q psy17388 166 KNPDLILETVNVPVEKCANSVLDMIAAK 193 (272)
Q Consensus 166 ~~~~~~Idt~~~~~ee~~~~I~~~L~~~ 193 (272)
...+++|+++ +++++++++.+.|.+.
T Consensus 683 ~~fd~vi~Nd--~l~~a~~~l~~~i~~~ 708 (721)
T 2xkx_A 683 ECFSAIVEGD--SFEEIYHKVKRVIEDL 708 (721)
T ss_pred ccCcEEEECc--CHHHHHHHHHHHHHhc
Confidence 2456778765 7999999999998764
No 328
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.57 E-value=0.0015 Score=56.58 Aligned_cols=24 Identities=38% Similarity=0.632 Sum_probs=22.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
.++|+|++|+||||+++.+++.+.
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHhc
Confidence 389999999999999999999874
No 329
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.57 E-value=0.0023 Score=62.90 Aligned_cols=40 Identities=18% Similarity=0.342 Sum_probs=33.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
.++|.|+||+|||++|+++++.+...+.+++.++...+..
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~ 562 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME 562 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccc
Confidence 6999999999999999999999866667788887655544
No 330
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.57 E-value=0.0015 Score=58.66 Aligned_cols=38 Identities=16% Similarity=0.261 Sum_probs=30.2
Q ss_pred CCCeEEEE--EcCCCCCHHHHHHHHHHHHHHc------CCCEEEec
Q psy17388 20 QSNICLLF--PGLSGAGKTSISFQIESYLIAQ------GIPAYALD 57 (272)
Q Consensus 20 ~~~~lI~l--~G~~GsGKSTlAr~La~~L~~~------g~~~~~ld 57 (272)
..+..++| +|++|+||||+++.+++.+... +..+.+++
T Consensus 48 ~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 48 LSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp BCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 45678888 9999999999999999988643 44556665
No 331
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.56 E-value=0.0012 Score=65.43 Aligned_cols=37 Identities=24% Similarity=0.367 Sum_probs=30.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD 59 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D 59 (272)
.++..|+|+|+||+||||+|++|+..+ +.+++.++..
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l---~~~~i~v~~~ 272 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGP 272 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTT---TCEEEEEEHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHc---CCcEEEEEch
Confidence 567789999999999999999999887 4455556543
No 332
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.56 E-value=0.0016 Score=59.36 Aligned_cols=40 Identities=10% Similarity=0.041 Sum_probs=30.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH------cCCCEEEecCcc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIA------QGIPAYALDGDN 60 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~------~g~~~~~ld~D~ 60 (272)
++.++.|.|+|||||||+++.++-.... .+.++.|++++.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 6789999999999999999987643311 134588888765
No 333
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=96.55 E-value=0.0029 Score=52.73 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=34.2
Q ss_pred CCeEE-EEEcCCCCCHHHHHHHHHHHHHHc-CCCEEEecCccc
Q psy17388 21 SNICL-LFPGLSGAGKTSISFQIESYLIAQ-GIPAYALDGDNL 61 (272)
Q Consensus 21 ~~~lI-~l~G~~GsGKSTlAr~La~~L~~~-g~~~~~ld~D~i 61 (272)
++++| +..+-.|+||||+|-.|+..|... |.++..+|.|.-
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLP 45 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTT
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCC
Confidence 34555 445778999999999999999888 999999999854
No 334
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.55 E-value=0.0011 Score=56.33 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.++.|.|++||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 467899999999999999999998765
No 335
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=96.53 E-value=0.0017 Score=55.22 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=33.8
Q ss_pred CCCeEEEE-EcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 20 QSNICLLF-PGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 20 ~~~~lI~l-~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
.++++|.+ .+-.|+||||+|..|+..|. +|.++..+|.|.
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~ 65 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDT 65 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECT
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCC
Confidence 45666655 68889999999999999998 899999999884
No 336
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.53 E-value=0.0044 Score=61.80 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=34.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
..++|.|++|+|||++|++|++.+...+.+++.++...+..
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~ 629 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYME 629 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccc
Confidence 48999999999999999999999866566788888766544
No 337
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.52 E-value=0.0027 Score=59.75 Aligned_cols=40 Identities=20% Similarity=0.178 Sum_probs=33.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD 59 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D 59 (272)
.++.++.|.|++||||||+++.++..+...|.++.++..+
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~e 318 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYE 318 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 4678999999999999999999998876666666666544
No 338
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.51 E-value=0.0015 Score=58.67 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.++.|.|++||||||+.+.|+-.+
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 467899999999999999999999765
No 339
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.50 E-value=0.0012 Score=57.07 Aligned_cols=27 Identities=30% Similarity=0.427 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.++.|.|++||||||+.+.|+-.+
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 467899999999999999999998765
No 340
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.49 E-value=0.0016 Score=55.09 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.+ .++.|.|++||||||+.+.|+-.+
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 35 789999999999999999998765
No 341
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.49 E-value=0.0019 Score=57.27 Aligned_cols=29 Identities=38% Similarity=0.505 Sum_probs=25.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
+..+..++|+|++|+||||+++++++.+.
T Consensus 35 ~~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 35 GRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp TCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34456789999999999999999999984
No 342
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.48 E-value=0.0013 Score=56.10 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.+|.++.|.|++||||||+.+.|+-.+
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998765
No 343
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.47 E-value=0.0044 Score=60.83 Aligned_cols=38 Identities=32% Similarity=0.512 Sum_probs=31.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccccc
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN 63 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~~ 63 (272)
..++|.|+||+|||++|++|++.+ +.+++.++...+..
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l---~~~~~~i~~s~~~~ 526 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMSEYME 526 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH---TCEEEEEEGGGCSS
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh---cCCEEEEechhhcc
Confidence 479999999999999999999998 56677777655433
No 344
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.46 E-value=0.0018 Score=56.19 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=22.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
.++|.|++|+||||+++.+++.+.
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 399999999999999999999874
No 345
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.42 E-value=0.0018 Score=58.51 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.++.|.|++||||||+.+.|+-.+
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 568899999999999999999999765
No 346
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=96.41 E-value=0.0024 Score=55.24 Aligned_cols=40 Identities=18% Similarity=0.155 Sum_probs=33.5
Q ss_pred CeEEEEE---cCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 22 NICLLFP---GLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 22 ~~lI~l~---G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
+++|.|. +-.|+||||++..|+..|...|.++..+|.|.-
T Consensus 34 ~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q 76 (298)
T 2oze_A 34 NEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQ 76 (298)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred CcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 3445555 589999999999999999989999999998854
No 347
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.41 E-value=0.00082 Score=51.90 Aligned_cols=26 Identities=8% Similarity=0.071 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.+..|+|.|+||+|||++|+++++..
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhC
Confidence 34458899999999999999999875
No 348
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.40 E-value=0.0019 Score=58.04 Aligned_cols=27 Identities=22% Similarity=0.191 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.++.|.|++||||||+.+.|+-.+
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 578899999999999999999998765
No 349
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.39 E-value=0.005 Score=51.19 Aligned_cols=37 Identities=14% Similarity=-0.057 Sum_probs=28.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYAL 56 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~l 56 (272)
.+|.+.+++|+|||||||.+-.++.++..+|.++..+
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~ 62 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVF 62 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEE
Confidence 5689999999999999995555556666777777654
No 350
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.38 E-value=0.002 Score=57.77 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.++.|.|++||||||+.+.|+-.+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 467899999999999999999999765
No 351
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.36 E-value=0.004 Score=51.17 Aligned_cols=36 Identities=31% Similarity=0.491 Sum_probs=31.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
+.+..+-.|+||||++..|+..|...| ++..+|.|.
T Consensus 3 I~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~ 38 (209)
T 3cwq_A 3 ITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDP 38 (209)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECT
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCC
Confidence 445578899999999999999999889 999999884
No 352
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.36 E-value=0.0012 Score=58.01 Aligned_cols=41 Identities=24% Similarity=0.335 Sum_probs=29.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
.++.++.|.|++||||||+.+.|...+... .+.+.+++..+
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~-~G~I~i~G~~i 118 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFYDIS-SGCIRIDGQDI 118 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSSCCS-EEEEEETTEET
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCCCC-CcEEEECCEEc
Confidence 467899999999999999999998765311 12345665443
No 353
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.35 E-value=0.0038 Score=59.47 Aligned_cols=35 Identities=14% Similarity=0.235 Sum_probs=30.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYAL 56 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~l 56 (272)
..+++|+|+||+||||+++.+...+...|.++.++
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 46899999999999999999999988777776655
No 354
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.34 E-value=0.0022 Score=57.66 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.++.|.|++||||||+.+.|+-.+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 467899999999999999999999765
No 355
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.34 E-value=0.0018 Score=56.35 Aligned_cols=27 Identities=37% Similarity=0.448 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.+|.++.|.|++||||||+.+.|+-.+
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 467899999999999999999998765
No 356
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.34 E-value=0.0021 Score=57.58 Aligned_cols=27 Identities=30% Similarity=0.277 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.++.|.|++||||||+.+.|+-.+
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 467899999999999999999999765
No 357
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.33 E-value=0.0016 Score=58.41 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=28.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD 57 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld 57 (272)
.++.+++|+|++||||||+.+.|...+... .+.+.++
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~~~-~g~I~ie 209 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIPFD-QRLITIE 209 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSCTT-SCEEEEE
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCCCC-ceEEEEC
Confidence 367799999999999999999999876432 2344454
No 358
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.32 E-value=0.0023 Score=57.76 Aligned_cols=27 Identities=30% Similarity=0.329 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.++.|.|++||||||+.+.|+-.+
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 467899999999999999999999765
No 359
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=96.32 E-value=0.0054 Score=50.47 Aligned_cols=35 Identities=20% Similarity=0.143 Sum_probs=29.8
Q ss_pred EEEEEc-CCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388 24 CLLFPG-LSGAGKTSISFQIESYLIAQGIPAYALDG 58 (272)
Q Consensus 24 lI~l~G-~~GsGKSTlAr~La~~L~~~g~~~~~ld~ 58 (272)
.|+++| -.|+||||++-.|+..|..+|.++.++|.
T Consensus 3 ~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~dp 38 (224)
T 1byi_A 3 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKP 38 (224)
T ss_dssp EEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 455555 58999999999999999999999988874
No 360
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.31 E-value=0.0049 Score=54.24 Aligned_cols=40 Identities=18% Similarity=0.224 Sum_probs=37.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
..++|.|.|-=|+||||++--|+..|...|.++..+|.|-
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~Dp 86 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDP 86 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 4579999999999999999999999999999999999883
No 361
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.31 E-value=0.0026 Score=55.79 Aligned_cols=41 Identities=32% Similarity=0.374 Sum_probs=31.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH--H----------HcC----CCEEEecCcc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL--I----------AQG----IPAYALDGDN 60 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L--~----------~~g----~~~~~ld~D~ 60 (272)
.++.++.|.|+|||||||+|..++... + ..| .++.|++.+.
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~ 152 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEG 152 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSS
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCC
Confidence 367899999999999999999999752 1 113 4678888764
No 362
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.30 E-value=0.0017 Score=60.20 Aligned_cols=28 Identities=32% Similarity=0.331 Sum_probs=25.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
.+|.++.|.|++||||||+.+.|+..+.
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCccc
Confidence 4788999999999999999999998654
No 363
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.30 E-value=0.0021 Score=56.56 Aligned_cols=35 Identities=26% Similarity=0.349 Sum_probs=26.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG 58 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~ 58 (272)
-.+++|+|+.||||||+.+.|.... .|.++.++..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~--~~~~~aVi~~ 38 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ--HGYKIAVIEN 38 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC--CCCCEEEECS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc--CCCcEEEEEe
Confidence 3589999999999999999998754 2444444443
No 364
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.27 E-value=0.0029 Score=63.12 Aligned_cols=42 Identities=21% Similarity=0.302 Sum_probs=30.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHH-------cCCCEEEecCccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIA-------QGIPAYALDGDNL 61 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~-------~g~~~~~ld~D~i 61 (272)
.++..++|+|+||+||||+++.+++.+.. .+.++++++...+
T Consensus 189 ~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l 237 (854)
T 1qvr_A 189 RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSL 237 (854)
T ss_dssp SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---
T ss_pred CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHh
Confidence 44556899999999999999999999854 2556666665433
No 365
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.26 E-value=0.0041 Score=56.13 Aligned_cols=38 Identities=21% Similarity=0.135 Sum_probs=32.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD 59 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D 59 (272)
...++|.|++||||||+++.+...+...|..+.++|.+
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~ 72 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPE 72 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 45689999999999999999998887778888888854
No 366
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.24 E-value=0.0045 Score=58.22 Aligned_cols=40 Identities=25% Similarity=0.272 Sum_probs=29.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHH--HHHHHHcCCCEEEecCcc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQI--ESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~L--a~~L~~~g~~~~~ld~D~ 60 (272)
.++.++.|.|++||||||+++.+ +-.+. .+-..++++...
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~-~~~g~i~v~g~~ 78 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIE-FDEPGVFVTFEE 78 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSS
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEEeC
Confidence 37889999999999999999994 44432 234567777654
No 367
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.24 E-value=0.0022 Score=57.44 Aligned_cols=25 Identities=12% Similarity=0.210 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
+..+.|.|++||||||+++.|+..+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999999987
No 368
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.24 E-value=0.0026 Score=57.76 Aligned_cols=39 Identities=18% Similarity=0.251 Sum_probs=29.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
.++.++.|.|++||||||+.+.|+-.+... .-+++++..
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~--G~I~i~G~~ 83 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRLLNTE--GEIQIDGVS 83 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTCSEEE--EEEEESSCB
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCCCCC--eEEEECCEE
Confidence 468899999999999999999999755311 234565543
No 369
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.23 E-value=0.0026 Score=57.40 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.++.|.|++||||||+.+.|+-.+
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 467899999999999999999999765
No 370
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.22 E-value=0.0019 Score=57.78 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.++.|.|++||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 467899999999999999999998665
No 371
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.20 E-value=0.0076 Score=49.26 Aligned_cols=38 Identities=8% Similarity=0.006 Sum_probs=27.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD 57 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld 57 (272)
.++.+.+++|+|||||||-.-........+|.++.++.
T Consensus 18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~k 55 (195)
T 1w4r_A 18 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 55 (195)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEc
Confidence 46789999999999999544444444456677777764
No 372
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.19 E-value=0.0023 Score=54.94 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=26.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG 58 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~ 58 (272)
+.++.|.|++||||||+.+.|+-.++.. ..+.+++
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~p~~--G~I~~~g 64 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLLPYS--GNIFING 64 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSSCCE--EEEEETT
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCCCC--cEEEECC
Confidence 7899999999999999999998765212 2345555
No 373
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=96.18 E-value=0.0049 Score=53.12 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=33.2
Q ss_pred eEEEE-EcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 23 ICLLF-PGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 23 ~lI~l-~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
++|.+ .+-.|+||||++..|+..|...|.++..+|.|.
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 43 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDL 43 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 35555 578899999999999999999999999999986
No 374
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.17 E-value=0.0014 Score=64.93 Aligned_cols=39 Identities=26% Similarity=0.339 Sum_probs=30.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
.++..++|.|+||+||||+|++++..+ +.+++.++...+
T Consensus 509 ~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l 547 (806)
T 1ypw_A 509 TPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPEL 547 (806)
T ss_dssp CCCCCCCCBCCTTSSHHHHHHHHHHHH---TCCCCCCCCSSS
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHHh---CCCEEEEechHh
Confidence 356678999999999999999999998 555655655443
No 375
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.16 E-value=0.0031 Score=50.18 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
+.+.+|+|+.||||||+.++|.-.|
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 3388999999999999999999877
No 376
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.16 E-value=0.0034 Score=49.56 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
.++..|+|.|.+|+||||+.+.|...
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45678999999999999999999753
No 377
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.14 E-value=0.0042 Score=54.88 Aligned_cols=30 Identities=27% Similarity=0.657 Sum_probs=26.0
Q ss_pred cCCCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 18 EGQSNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
.++.+..++|.|++|+||||+|+.+++.+.
T Consensus 20 ~~~~~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 20 AGRGHHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp TTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cCCcceeEEEECCCCchHHHHHHHHHHHHh
Confidence 344566799999999999999999999984
No 378
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.12 E-value=0.0054 Score=53.65 Aligned_cols=34 Identities=32% Similarity=0.217 Sum_probs=28.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD 59 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D 59 (272)
.+++|.|++|+||||+++.+.+.+ +.++.+++..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~---~~~~~~~~~~ 64 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINEL---NLPYIYLDLR 64 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH---TCCEEEEEGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhc---CCCEEEEEch
Confidence 489999999999999999999987 3356677644
No 379
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=96.08 E-value=0.0092 Score=50.49 Aligned_cols=38 Identities=24% Similarity=0.296 Sum_probs=33.1
Q ss_pred CCCeEEEEEcC-CCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388 20 QSNICLLFPGL-SGAGKTSISFQIESYLIAQGIPAYALD 57 (272)
Q Consensus 20 ~~~~lI~l~G~-~GsGKSTlAr~La~~L~~~g~~~~~ld 57 (272)
++.+.|+|+|. +|+|||+++-.|.+.|..+|.++.++-
T Consensus 19 ~m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fK 57 (242)
T 3qxc_A 19 FQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLK 57 (242)
T ss_dssp CCCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred hcCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEe
Confidence 44577888887 999999999999999999999988764
No 380
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.08 E-value=0.0015 Score=57.55 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
..|+|.|+||+|||++|+++++.+
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHS
T ss_pred ceEEEECCCCccHHHHHHHHHHhC
Confidence 349999999999999999999987
No 381
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.07 E-value=0.0059 Score=65.55 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=37.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
.++.+|.|+|+||+||||+|.+++.....+|..+.|++.+..
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 1466 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccc
Confidence 368899999999999999999999988778889999997754
No 382
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.07 E-value=0.0019 Score=57.80 Aligned_cols=27 Identities=30% Similarity=0.231 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.++.|.|++||||||+.+.|+-.+
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 467899999999999999999999755
No 383
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.06 E-value=0.0046 Score=54.39 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
.+.-|+|+|.||+||||+|.+|.++
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 3677999999999999999999886
No 384
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.06 E-value=0.0017 Score=57.63 Aligned_cols=36 Identities=17% Similarity=0.262 Sum_probs=27.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD 57 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld 57 (272)
++.++.|+|++||||||+.+.|...+.... +.+.++
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~~-g~i~i~ 205 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEE-RIISIE 205 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCTTS-CEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCC-cEEEEC
Confidence 567899999999999999999998764322 344444
No 385
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.05 E-value=0.0038 Score=61.37 Aligned_cols=29 Identities=24% Similarity=0.351 Sum_probs=25.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIA 48 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~ 48 (272)
..+..++|.|+||+||||+|+.|++.+..
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l~~ 227 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHHhc
Confidence 45567899999999999999999999843
No 386
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.02 E-value=0.0048 Score=48.89 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIES 44 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~ 44 (272)
++...|+|.|.+|+||||+.+.|..
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4556899999999999999999875
No 387
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.00 E-value=0.0047 Score=48.24 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Q psy17388 22 NICLLFPGLSGAGKTSISFQIES 44 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~ 44 (272)
...|+|.|.+|+||||+.+.|..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHhC
Confidence 35799999999999999999975
No 388
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=95.99 E-value=0.0092 Score=56.85 Aligned_cols=42 Identities=21% Similarity=0.289 Sum_probs=37.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
....++++.|.+|+||||+|..|+..+...|.++..+|.|-.
T Consensus 325 ~~~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp~ 366 (589)
T 1ihu_A 325 NEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA 366 (589)
T ss_dssp TSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred cCCeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCCc
Confidence 455688889999999999999999999999999999999843
No 389
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.97 E-value=0.0046 Score=53.13 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=21.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
.+.|.|++||||||+.+.|.....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999998763
No 390
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.96 E-value=0.0065 Score=59.62 Aligned_cols=32 Identities=25% Similarity=0.253 Sum_probs=27.0
Q ss_pred cCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Q psy17388 18 EGQSNICLLFPGLSGAGKTSISFQIESYLIAQ 49 (272)
Q Consensus 18 ~~~~~~lI~l~G~~GsGKSTlAr~La~~L~~~ 49 (272)
...++..++|+|+||+||||+++.|++.+...
T Consensus 203 ~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~ 234 (758)
T 1r6b_X 203 CRRRKNNPLLVGESGVGKTAIAEGLAWRIVQG 234 (758)
T ss_dssp TSSSSCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred hccCCCCeEEEcCCCCCHHHHHHHHHHHHHhC
Confidence 33456778999999999999999999998653
No 391
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.93 E-value=0.0083 Score=55.39 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=27.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCC-CEEE
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGI-PAYA 55 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~-~~~~ 55 (272)
.++|.|++||||||++..+.+.|...|. .+..
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~ 79 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIIL 79 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEE
Confidence 8999999999999999999999987765 3443
No 392
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.93 E-value=0.0054 Score=52.65 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
...|+|.|+||+|||++|.+|+..+
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhh
Confidence 3579999999999999999999975
No 393
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.92 E-value=0.0028 Score=51.39 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=23.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
-.++..|+|.|.+||||||+.+.|...
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 356788999999999999999988743
No 394
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=95.91 E-value=0.013 Score=49.06 Aligned_cols=35 Identities=26% Similarity=0.252 Sum_probs=31.1
Q ss_pred eEEEEEcC-CCCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388 23 ICLLFPGL-SGAGKTSISFQIESYLIAQGIPAYALD 57 (272)
Q Consensus 23 ~lI~l~G~-~GsGKSTlAr~La~~L~~~g~~~~~ld 57 (272)
+.|+|+|. +|+||||++-.|++.|..+|.++.++-
T Consensus 5 k~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~K 40 (228)
T 3of5_A 5 KKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLK 40 (228)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEec
Confidence 56889998 899999999999999999998887754
No 395
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.91 E-value=0.0057 Score=46.87 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
...|++.|.+|+||||+.+.|...
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999998754
No 396
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.90 E-value=0.0035 Score=60.03 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
++..++|.|+||+||||+|+.++..+.
T Consensus 59 ~g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 59 QKRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 446799999999999999999999874
No 397
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=95.87 E-value=0.0039 Score=54.74 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
.+.-|+|+|.||+||||+|.+|.++
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~~ 170 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLINK 170 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3566999999999999999988764
No 398
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.85 E-value=0.0064 Score=46.72 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
+..-|++.|.+|+||||+...+...
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcC
Confidence 3467999999999999999888753
No 399
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=95.84 E-value=0.011 Score=53.35 Aligned_cols=41 Identities=15% Similarity=0.200 Sum_probs=33.7
Q ss_pred CCCeEEEEE-cCCCCCHHHHHHHHHHHHHH------cCCCEEEecCcc
Q psy17388 20 QSNICLLFP-GLSGAGKTSISFQIESYLIA------QGIPAYALDGDN 60 (272)
Q Consensus 20 ~~~~lI~l~-G~~GsGKSTlAr~La~~L~~------~g~~~~~ld~D~ 60 (272)
.++++|.+. |-.|+||||++-.|+..|.. .|.++.++|.|.
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~ 153 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDP 153 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECT
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCC
Confidence 446666554 88999999999999999973 588999999884
No 400
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.83 E-value=0.0034 Score=58.95 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
++.+|+|+|++||||||+.++|...+.
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 566799999999999999999998774
No 401
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.81 E-value=0.0054 Score=53.53 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.+.++.|.|++||||||+.+.|. .+
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 46789999999999999999999 54
No 402
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.79 E-value=0.0075 Score=46.36 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
+..-|++.|.+|+||||+.+.|...
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4467999999999999999988753
No 403
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.78 E-value=0.0054 Score=54.96 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
++.++.|.|++||||||+.+.|...+
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCCEEEEECCCCccHHHHHHHHhccc
Confidence 56789999999999999999988544
No 404
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.76 E-value=0.0071 Score=52.77 Aligned_cols=31 Identities=23% Similarity=0.252 Sum_probs=26.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG 58 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~ 58 (272)
.+++|+|++|+||||+++.+.+.+ ++.+++.
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~-----~~~~~~~ 62 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNER-----PGILIDC 62 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHS-----SEEEEEH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHc-----CcEEEEe
Confidence 689999999999999999999876 3666664
No 405
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.71 E-value=0.0066 Score=48.23 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
++..-|++.|.+|+||||+...|...
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcC
Confidence 45568999999999999999999854
No 406
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.71 E-value=0.0071 Score=48.57 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
...|+|.|.+||||||+.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3578999999999999999998653
No 407
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.69 E-value=0.012 Score=62.45 Aligned_cols=43 Identities=16% Similarity=0.214 Sum_probs=37.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR 62 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i~ 62 (272)
.++.+|+|.|+||+||||+|..++......|.++.|++.+.-.
T Consensus 730 ~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~ 772 (1706)
T 3cmw_A 730 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 772 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCC
T ss_pred CCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchH
Confidence 4678999999999999999999999887778889999987543
No 408
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=95.69 E-value=0.0071 Score=54.51 Aligned_cols=37 Identities=27% Similarity=0.337 Sum_probs=34.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecC
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG 58 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~ 58 (272)
.++++++|..|+||||+|..|+..+...|.++..+|.
T Consensus 2 ~~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 2 ALILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp CEEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 4688999999999999999999999999999999987
No 409
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.68 E-value=0.0044 Score=61.20 Aligned_cols=36 Identities=25% Similarity=0.322 Sum_probs=28.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGD 59 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D 59 (272)
+|.-|+|.|+||+|||.+|++++..+ +.+++.++..
T Consensus 510 ~~~gvLl~GPPGtGKT~lAkaiA~e~---~~~f~~v~~~ 545 (806)
T 3cf2_A 510 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGP 545 (806)
T ss_dssp CCSCCEEESSTTSSHHHHHHHHHHTT---TCEEEECCHH
T ss_pred CCceEEEecCCCCCchHHHHHHHHHh---CCceEEeccc
Confidence 45568999999999999999999998 5555555543
No 410
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.63 E-value=0.0066 Score=57.37 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.++.|.|++||||||+.+.|+-.+
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 578899999999999999999998754
No 411
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.62 E-value=0.0085 Score=46.21 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
+..-|++.|.+||||||+.+.|...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 3457899999999999999998764
No 412
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.62 E-value=0.0043 Score=58.12 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
+..|+|.|+||+|||++|++|+..+
T Consensus 41 ~~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred CCeeEeecCchHHHHHHHHHHHHHH
Confidence 3578999999999999999999877
No 413
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.62 E-value=0.0079 Score=48.50 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
.+..-|+|.|.+|+||||+.+.|...
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 45567999999999999999998864
No 414
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.60 E-value=0.011 Score=47.09 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
.+..-|+|.|.+|+||||+...|...
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 34567999999999999999998764
No 415
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.60 E-value=0.0065 Score=57.91 Aligned_cols=41 Identities=22% Similarity=0.396 Sum_probs=30.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
.+|.++.|.|++||||||+.+.|...+.... +.+.+|+.++
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~-G~i~~~g~~~ 407 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFYDVDS-GSICLDGHDV 407 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCC-CEEEECCEEh
Confidence 4678999999999999999999998763211 3445665433
No 416
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.59 E-value=0.0094 Score=45.91 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
..-|++.|.+|+||||+.+.|...
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999998753
No 417
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.58 E-value=0.014 Score=61.96 Aligned_cols=40 Identities=18% Similarity=0.260 Sum_probs=36.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
++.++.|.|+||+||||+|..++......|.++.|++.+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~ 421 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 421 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 6889999999999999999999988877788999999865
No 418
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.57 E-value=0.0075 Score=48.58 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
..|+|.|.+||||||+.+.|...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 56899999999999999999864
No 419
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.54 E-value=0.0074 Score=52.59 Aligned_cols=26 Identities=35% Similarity=0.405 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.+.++.|.|++||||||+.+.|+..+
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred cCCeEEEECCCCCcHHHHHHHhcccc
Confidence 46789999999999999999998654
No 420
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.54 E-value=0.0061 Score=58.08 Aligned_cols=41 Identities=24% Similarity=0.376 Sum_probs=30.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
.+|.++.|.|++||||||+.+.|...+... .+.+.+|+.++
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~-~G~i~~~g~~~ 407 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFYDID-EGHILMDGHDL 407 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTTCCS-EEEEEETTEET
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhccCCC-CCeEEECCEEc
Confidence 467899999999999999999998766321 12345665443
No 421
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=95.53 E-value=0.0076 Score=53.92 Aligned_cols=37 Identities=30% Similarity=0.459 Sum_probs=32.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
+.+.++-.|+||||+|-.|+..|...|.++.++|.|.
T Consensus 4 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~ 40 (361)
T 3pg5_A 4 ISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDP 40 (361)
T ss_dssp EEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 4455689999999999999999998999999999884
No 422
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.52 E-value=0.0067 Score=55.60 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=22.2
Q ss_pred CCCeE--EEEEcCCCCCHHHHHHHHHHH
Q psy17388 20 QSNIC--LLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 20 ~~~~l--I~l~G~~GsGKSTlAr~La~~ 45 (272)
.+|.+ +.|.|++||||||+.+.|...
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 46777 999999999999999999754
No 423
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.52 E-value=0.0096 Score=46.53 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIES 44 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~ 44 (272)
.++..|++.|.+|+||||+...|..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3556899999999999999998865
No 424
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.50 E-value=0.01 Score=45.47 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q psy17388 24 CLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~ 45 (272)
.|++.|.+|+||||+.+.+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998764
No 425
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.49 E-value=0.01 Score=47.19 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
+...|++.|.+||||||+...|...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999988764
No 426
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.44 E-value=0.013 Score=45.44 Aligned_cols=25 Identities=36% Similarity=0.699 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIES 44 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~ 44 (272)
.+...|++.|.+|+||||+...|..
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3456799999999999999999864
No 427
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.42 E-value=0.01 Score=51.91 Aligned_cols=33 Identities=18% Similarity=0.336 Sum_probs=26.6
Q ss_pred hhhhcCCCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 14 RDFKEGQSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 14 r~~~~~~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
+......++..++|.|++|+||||+|+++++.+
T Consensus 10 ~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~ 42 (305)
T 2gno_A 10 KRIIEKSEGISILINGEDLSYPREVSLELPEYV 42 (305)
T ss_dssp HHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred HHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhC
Confidence 344444446789999999999999999999865
No 428
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.41 E-value=0.011 Score=45.99 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
+..-|+|.|.+|+||||+.+.|...
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEEEECCCCccHHHHHHHHhcC
Confidence 3457999999999999999988643
No 429
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=95.41 E-value=0.0087 Score=54.23 Aligned_cols=41 Identities=17% Similarity=0.184 Sum_probs=26.2
Q ss_pred CCCeEEE-EEcCCCCCHHHHHHHHHHHHH------HcCCCEEEecCcc
Q psy17388 20 QSNICLL-FPGLSGAGKTSISFQIESYLI------AQGIPAYALDGDN 60 (272)
Q Consensus 20 ~~~~lI~-l~G~~GsGKSTlAr~La~~L~------~~g~~~~~ld~D~ 60 (272)
.++++|. .+|-.|+||||++-.|+..|. ..|.++.++|.|.
T Consensus 109 ~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~ 156 (403)
T 3ez9_A 109 KSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDP 156 (403)
T ss_dssp CSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESS
T ss_pred CCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCC
Confidence 4555554 458999999999999999997 4688999999985
No 430
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.40 E-value=0.01 Score=46.85 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
+..-|++.|.+|+||||+...|...
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhC
Confidence 3467999999999999999998753
No 431
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.39 E-value=0.0089 Score=56.49 Aligned_cols=27 Identities=26% Similarity=0.334 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.++.++.|.|+.||||||+.+.|+-.+
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 468899999999999999999998754
No 432
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.38 E-value=0.013 Score=46.10 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
.+..-|+|.|.+|+||||+...|...
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34567999999999999999998854
No 433
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.36 E-value=0.017 Score=62.19 Aligned_cols=40 Identities=18% Similarity=0.260 Sum_probs=36.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCcc
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDN 60 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~ 60 (272)
++.++.|.|+||+||||+|..++......|.++.|+|.+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~ 421 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 421 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCC
Confidence 6789999999999999999999998876777899999875
No 434
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.36 E-value=0.012 Score=47.92 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
+...|+|.|.+|+||||+...|...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4467999999999999999998865
No 435
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.35 E-value=0.011 Score=45.96 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
..-|++.|.+|+||||+.+.|...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 467999999999999999998754
No 436
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.34 E-value=0.012 Score=45.87 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
+..-|++.|.+|+||||+.+.|...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3467999999999999999998764
No 437
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.34 E-value=0.013 Score=45.79 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIES 44 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~ 44 (272)
+..-|+|.|.+|+||||+.+.|..
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHh
Confidence 456799999999999999999874
No 438
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.30 E-value=0.012 Score=46.11 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
.+..-|+|.|.+|+||||+.+.|...
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhC
Confidence 34567999999999999999988753
No 439
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.30 E-value=0.012 Score=45.42 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
..-|++.|.+|+||||+...|...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999988753
No 440
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.29 E-value=0.012 Score=45.88 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
+..-|++.|.+||||||+.+.|...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4467999999999999999988753
No 441
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.29 E-value=0.0082 Score=56.72 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
.++.++.|.|++||||||+.+.|+-.+.
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3678999999999999999999997653
No 442
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.29 E-value=0.0094 Score=47.38 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q psy17388 23 ICLLFPGLSGAGKTSISFQIES 44 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~ 44 (272)
.-|+|.|.+|+||||+.+.+..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999875
No 443
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.27 E-value=0.011 Score=53.94 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.+.++.|.|++||||||+.+.|...+
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 44589999999999999999998743
No 444
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.26 E-value=0.0039 Score=54.68 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
++.++.|.|+|||||||+.+.|...+
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHhcccc
Confidence 56799999999999999999997654
No 445
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.25 E-value=0.012 Score=45.36 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q psy17388 23 ICLLFPGLSGAGKTSISFQIES 44 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~ 44 (272)
.-|++.|.+|+||||+.+.|..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5689999999999999998875
No 446
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.24 E-value=0.011 Score=56.80 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.+|.++.|.|++||||||+.+.|+-.+
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 468899999999999999999999765
No 447
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.21 E-value=0.0067 Score=57.94 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=29.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
.+|.++.|.|++||||||+.+.|...+... .+.+.+|+.++
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~-~G~i~~~g~~i 408 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRLYDPA-SGTISLDGHDI 408 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTSSCCS-EEEEEETTEET
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCCC-CcEEEECCEEh
Confidence 467889999999999999999998765311 12345665433
No 448
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.21 E-value=0.014 Score=45.90 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=21.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIES 44 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~ 44 (272)
++..-|++.|.+|+||||+.+.|..
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHc
Confidence 3456799999999999999998875
No 449
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.18 E-value=0.011 Score=55.81 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
+|.++.|.|+.||||||+.+.|+-.+
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999999998765
No 450
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.18 E-value=0.011 Score=45.69 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q psy17388 23 ICLLFPGLSGAGKTSISFQIES 44 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~ 44 (272)
.-|++.|.+|+||||+.+.+..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHcC
Confidence 3589999999999999998853
No 451
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.17 E-value=0.0074 Score=57.72 Aligned_cols=41 Identities=20% Similarity=0.287 Sum_probs=30.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
.+|.++.|.|++||||||+.+.|...+... .+.+.+|+.++
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p~-~G~i~~~g~~i 419 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFYDVD-RGQILVDGIDI 419 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSSCCS-EEEEEETTEEG
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCcCCC-CeEEEECCEEh
Confidence 467899999999999999999998765311 12345665444
No 452
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.17 E-value=0.011 Score=46.56 Aligned_cols=25 Identities=36% Similarity=0.705 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIES 44 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~ 44 (272)
.+...|++.|.+|+||||+...+..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 5677899999999999999987763
No 453
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.17 E-value=0.015 Score=46.06 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
.+..-|++.|.+|+||||+.+.|...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999988643
No 454
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.14 E-value=0.02 Score=44.48 Aligned_cols=26 Identities=31% Similarity=0.234 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.+.+.+|.|+.||||||+..++.-.|
T Consensus 22 ~~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 22 KEGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45688999999999999999998776
No 455
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.14 E-value=0.0061 Score=58.04 Aligned_cols=41 Identities=24% Similarity=0.431 Sum_probs=30.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
.+|.++.|.|++||||||+.+.|...+... .+.+.+|+.++
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p~-~G~i~~~g~~~ 405 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFYDVT-SGQILIDGHNI 405 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSSCCS-EEEEEETTEEG
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCCCC-CcEEEECCEEh
Confidence 467899999999999999999998765321 12445666444
No 456
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.14 E-value=0.016 Score=46.08 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
+...|++.|.+|+||||+...|...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999998753
No 457
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.12 E-value=0.013 Score=45.67 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Q psy17388 22 NICLLFPGLSGAGKTSISFQIES 44 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~ 44 (272)
..-|++.|.+|+||||+.+.|..
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 45799999999999999999875
No 458
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.11 E-value=0.013 Score=45.40 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q psy17388 24 CLLFPGLSGAGKTSISFQIE 43 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La 43 (272)
-|++.|.+|+||||+...+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999986
No 459
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.11 E-value=0.015 Score=46.60 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=20.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
.+..-|+|.|.+|+||||+.+.+...
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 45677999999999999999988743
No 460
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.09 E-value=0.013 Score=45.63 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=20.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIES 44 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~ 44 (272)
+..-|++.|.+|+||||+...|..
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHc
Confidence 346799999999999999998874
No 461
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.09 E-value=0.015 Score=49.60 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
...|+|.|.+||||||+..+|...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999998643
No 462
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.09 E-value=0.014 Score=45.08 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
..-|++.|.+|+||||+.+.|...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 457999999999999999998754
No 463
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.08 E-value=0.011 Score=56.81 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.+|.++.|.|++||||||+.+.|+-.+
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 578899999999999999999998655
No 464
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=95.08 E-value=0.037 Score=46.96 Aligned_cols=50 Identities=20% Similarity=0.219 Sum_probs=32.6
Q ss_pred cccchhhhhhhcCCCCeEEEEEcCC-CCCHHHHHHHHHHHHHHcCCCEEEec
Q psy17388 7 EGKESWLRDFKEGQSNICLLFPGLS-GAGKTSISFQIESYLIAQGIPAYALD 57 (272)
Q Consensus 7 ~~~~~~~r~~~~~~~~~lI~l~G~~-GsGKSTlAr~La~~L~~~g~~~~~ld 57 (272)
++-+.++|..-. ...+.|+|+|.. |+||||++-.|.+.|..+|+++.++-
T Consensus 12 ~~~~~~~~~~~~-~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fK 62 (251)
T 3fgn_A 12 SGLQGTENLYFQ-SHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCK 62 (251)
T ss_dssp ----------CC-SSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred chhhHHHHHhcc-cCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 344455444332 334678888875 99999999999999999999887764
No 465
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.08 E-value=0.016 Score=44.74 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHH
Q psy17388 23 ICLLFPGLSGAGKTSISFQIES 44 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~ 44 (272)
.-|++.|.+|+||||+...|..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 5689999999999999999874
No 466
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.07 E-value=0.015 Score=44.96 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
..-|++.|.+|+||||+.+.|...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 457999999999999999988753
No 467
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.06 E-value=0.014 Score=45.59 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=20.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIES 44 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~ 44 (272)
+..-|+|.|.+|+||||+...|..
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCS
T ss_pred cceEEEEECCCCCCHHHHHHHHhc
Confidence 346799999999999999998864
No 468
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.05 E-value=0.0079 Score=57.43 Aligned_cols=41 Identities=15% Similarity=0.199 Sum_probs=30.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEecCccc
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNL 61 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~ld~D~i 61 (272)
.++.++.|.|++||||||+.+.|...+... .+.+.+|+.++
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~-~G~i~i~g~~i 407 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLIDPE-RGRVEVDELDV 407 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSSCCS-EEEEEESSSBG
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCccCC-CcEEEECCEEc
Confidence 467899999999999999999998766311 12345665544
No 469
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.04 E-value=0.015 Score=45.52 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
.+..-|+|.|.+|+||||+...|...
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC
Confidence 34567999999999999999988753
No 470
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.02 E-value=0.013 Score=56.17 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.+|.++.|.|+.||||||+.+.|+-.+
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 357899999999999999999999765
No 471
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.01 E-value=0.015 Score=44.76 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Q psy17388 22 NICLLFPGLSGAGKTSISFQIES 44 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~ 44 (272)
..-|++.|.+|+||||+...|..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 45799999999999999998875
No 472
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.01 E-value=0.015 Score=46.46 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
+..-|+|.|.+|+||||+.+.|...
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CceEEEEECcCCCCHHHHHHHHhcC
Confidence 3467999999999999999998753
No 473
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.00 E-value=0.015 Score=53.49 Aligned_cols=27 Identities=19% Similarity=0.129 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.+|..+.|.|++||||||+.+.|+...
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 467899999999999999999999876
No 474
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.99 E-value=0.019 Score=45.42 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=22.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHH
Q psy17388 19 GQSNICLLFPGLSGAGKTSISFQIES 44 (272)
Q Consensus 19 ~~~~~lI~l~G~~GsGKSTlAr~La~ 44 (272)
..+...|++.|.+|+||||+.+.|..
T Consensus 13 ~~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 13 NHQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhc
Confidence 45677899999999999999998874
No 475
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.98 E-value=0.013 Score=46.03 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIES 44 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~ 44 (272)
+...|+|.|.+|+||||+...|..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 346799999999999999998874
No 476
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.98 E-value=0.016 Score=51.65 Aligned_cols=27 Identities=19% Similarity=-0.021 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESYL 46 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~L 46 (272)
.+|..+.|.|++||||||+.+.|+..+
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999999876
No 477
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.97 E-value=0.018 Score=45.08 Aligned_cols=26 Identities=23% Similarity=0.160 Sum_probs=21.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
.+..-|++.|.+|+||||+.+.+...
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999988753
No 478
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.97 E-value=0.019 Score=45.88 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
.+..-|+|.|.+|+||||+.+.|...
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 44567999999999999999988764
No 479
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.96 E-value=0.016 Score=48.31 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
+...|+|.|.+|+||||+...|...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 4567999999999999999988753
No 480
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.96 E-value=0.024 Score=54.26 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
.+.+++++|+||+||||++..+...+.
T Consensus 163 ~~~~~vi~G~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 163 TRRISVISGGPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp TBSEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 356899999999999999999888875
No 481
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=94.96 E-value=0.011 Score=58.74 Aligned_cols=19 Identities=37% Similarity=0.808 Sum_probs=17.8
Q ss_pred CCeEEEEEcCCCCCHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSIS 39 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlA 39 (272)
+..+++|+|.|||||||+|
T Consensus 35 ~~~l~viTGvSGSGKSSLa 53 (842)
T 2vf7_A 35 RDALVVFTGVSGSGKSSLA 53 (842)
T ss_dssp SSSEEEEESSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5789999999999999998
No 482
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.96 E-value=0.018 Score=45.52 Aligned_cols=25 Identities=36% Similarity=0.539 Sum_probs=21.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIES 44 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~ 44 (272)
.+...|++.|.+|+||||+...+..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999998874
No 483
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.95 E-value=0.017 Score=45.53 Aligned_cols=24 Identities=42% Similarity=0.419 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
..-|+|.|.+|+||||+...|...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 467999999999999999998753
No 484
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.94 E-value=0.017 Score=53.67 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 23 ICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 23 ~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
.++.|.|++||||||+.+.|+-.+.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 7899999999999999999998774
No 485
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.92 E-value=0.016 Score=46.27 Aligned_cols=24 Identities=38% Similarity=0.541 Sum_probs=20.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIES 44 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~ 44 (272)
+...|++.|.+|+||||+.+.+..
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 445789999999999999998875
No 486
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.92 E-value=0.02 Score=45.79 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
.+..-|+|.|.+||||||+...|...
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 34467999999999999999988753
No 487
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=94.92 E-value=0.017 Score=51.78 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIE 43 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La 43 (272)
.+..-|+|.|.+||||||+++++.
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHH
Confidence 456779999999999999999994
No 488
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.91 E-value=0.019 Score=45.63 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=21.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIES 44 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~ 44 (272)
.+..-|+|.|.+|+||||+...|..
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHc
Confidence 3456799999999999999998875
No 489
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.90 E-value=0.015 Score=45.52 Aligned_cols=26 Identities=19% Similarity=0.166 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
.+..-|++.|.+|+||||+...+...
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 44567999999999999999988763
No 490
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.90 E-value=0.017 Score=45.15 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
+..-|++.|.+|+||||+.+.|...
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3457999999999999999988753
No 491
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.89 E-value=0.018 Score=45.37 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
+..-|+|.|.+|+||||+.+.|...
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3467999999999999999988753
No 492
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=94.88 E-value=0.016 Score=50.49 Aligned_cols=26 Identities=12% Similarity=0.103 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
.++..|.|.|.||+||||+.++|...
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCC
Confidence 45568999999999999999988753
No 493
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.88 E-value=0.015 Score=55.73 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHH
Q psy17388 22 NICLLFPGLSGAGKTSISFQIESYLI 47 (272)
Q Consensus 22 ~~lI~l~G~~GsGKSTlAr~La~~L~ 47 (272)
+.++.|.|++||||||+.+.|+-.+.
T Consensus 378 GEiv~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 378 SEILVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp TCEEEEESCTTSSHHHHHHHHHTSSC
T ss_pred ceEEEEECCCCCcHHHHHHHHhcCCC
Confidence 36799999999999999999987653
No 494
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.87 E-value=0.019 Score=45.44 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
+..-|++.|.+|+||||+.+.|...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999998764
No 495
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.87 E-value=0.019 Score=44.16 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHHH
Q psy17388 24 CLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 24 lI~l~G~~GsGKSTlAr~La~~ 45 (272)
-|++.|.+|+||||+...+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999998754
No 496
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.86 E-value=0.021 Score=45.87 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=21.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIES 44 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~ 44 (272)
.+..-|+|.|.+|+||||+...|..
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHh
Confidence 4567899999999999999999875
No 497
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.85 E-value=0.033 Score=45.49 Aligned_cols=35 Identities=17% Similarity=0.255 Sum_probs=29.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEe
Q psy17388 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYAL 56 (272)
Q Consensus 21 ~~~lI~l~G~~GsGKSTlAr~La~~L~~~g~~~~~l 56 (272)
++ +|++.+.+|.||||.|-.++-+...+|.++.++
T Consensus 28 ~g-~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~v 62 (196)
T 1g5t_A 28 RG-IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVV 62 (196)
T ss_dssp CC-CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred Cc-eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 44 566666689999999999999998899999877
No 498
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.81 E-value=0.018 Score=46.39 Aligned_cols=25 Identities=32% Similarity=0.495 Sum_probs=21.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIES 44 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~ 44 (272)
.+..-|++.|.+|+||||+.+.+..
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4456789999999999999998864
No 499
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.81 E-value=0.021 Score=45.65 Aligned_cols=25 Identities=32% Similarity=0.632 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIES 44 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~ 44 (272)
.+..-|++.|.+|+||||+...+..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 4567899999999999999998853
No 500
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.79 E-value=0.02 Score=45.47 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Q psy17388 20 QSNICLLFPGLSGAGKTSISFQIESY 45 (272)
Q Consensus 20 ~~~~lI~l~G~~GsGKSTlAr~La~~ 45 (272)
++..-|+|.|.+|+||||+...|...
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcC
Confidence 34567999999999999999998753
Done!