RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17388
(272 letters)
>gnl|CDD|238985 cd02027, APSK, Adenosine 5'-phosphosulfate kinase (APSK) catalyzes
the phosphorylation of adenosine 5'-phosphosulfate to
form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The
end-product PAPS is a biologically "activated" sulfate
form important for the assimilation of inorganic
sulfate.
Length = 149
Score = 238 bits (609), Expect = 3e-80
Identities = 81/151 (53%), Positives = 109/151 (72%), Gaps = 2/151 (1%)
Query: 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRA 83
+ GLSG+GK++I+ +E L +G P Y LDGDN+R+G+N +L FS EDR EN+RR
Sbjct: 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLGFSREDREENIRRI 60
Query: 84 AECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH 143
AE AK+ A+ G I + +F+SP R+ AR+I +F EVFV+TP+E+CEQRD KG
Sbjct: 61 AEVAKLLADAGLIVIAAFISPYREDREAARKII--GGGDFLEVFVDTPLEVCEQRDPKGL 118
Query: 144 YKKAREGKIKSFTGVSQPYEAPKNPDLILET 174
YKKAR G+IK FTG+ PYEAP+NPDL+L+T
Sbjct: 119 YKKARAGEIKGFTGIDDPYEAPENPDLVLDT 149
>gnl|CDD|216586 pfam01583, APS_kinase, Adenylylsulphate kinase. Enzyme that
catalyzes the phosphorylation of adenylylsulphate to
3'-phosphoadenylylsulfate. This domain contains an ATP
binding P-loop motif.
Length = 157
Score = 237 bits (606), Expect = 9e-80
Identities = 89/151 (58%), Positives = 116/151 (76%), Gaps = 2/151 (1%)
Query: 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRA 83
+ F GLSG+GK++I+ +E L AQGI Y LDGDN+R+G+N +L FSEEDR EN+RR
Sbjct: 4 TIWFTGLSGSGKSTIANALERKLFAQGISVYVLDGDNVRHGLNKDLGFSEEDRTENIRRI 63
Query: 84 AECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH 143
AE AK+FA+ G I + SF+SP A RD ARE+H + +F EVFV+TP+E+CEQRD KG
Sbjct: 64 AEVAKLFADAGLIVITSFISPYRADRDMARELH--EDGKFIEVFVDTPLEVCEQRDPKGL 121
Query: 144 YKKAREGKIKSFTGVSQPYEAPKNPDLILET 174
YKKAR G+IK FTG+ PYEAP+NP+L+L+T
Sbjct: 122 YKKARAGEIKGFTGIDSPYEAPENPELVLDT 152
>gnl|CDD|223603 COG0529, CysC, Adenylylsulfate kinase and related kinases
[Inorganic ion transport and metabolism].
Length = 197
Score = 233 bits (596), Expect = 1e-77
Identities = 89/184 (48%), Positives = 126/184 (68%), Gaps = 2/184 (1%)
Query: 14 RDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSE 73
R+ +GQ + F GLSG+GK++I+ +E L A+G Y LDGDN+R+G+N +L FS
Sbjct: 15 REALKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSR 74
Query: 74 EDRNENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVE 133
EDR EN+RR AE AK+ A+ G I + +F+SP R ARE+ EF EV+V+TP+E
Sbjct: 75 EDRIENIRRVAEVAKLLADAGLIVIVAFISPYREDRQMARELL--GEGEFIEVYVDTPLE 132
Query: 134 ICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAK 193
+CE+RD KG YKKAR G+IK+FTG+ PYEAP+NP+L L+T VE+C +LD++ +
Sbjct: 133 VCERRDPKGLYKKARAGEIKNFTGIDSPYEAPENPELHLDTDRNSVEECVEQILDLLKER 192
Query: 194 GLIP 197
+I
Sbjct: 193 KIIK 196
>gnl|CDD|180120 PRK05506, PRK05506, bifunctional sulfate adenylyltransferase
subunit 1/adenylylsulfate kinase protein; Provisional.
Length = 632
Score = 237 bits (607), Expect = 4e-74
Identities = 88/178 (49%), Positives = 120/178 (67%), Gaps = 2/178 (1%)
Query: 19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNE 78
GQ + F GLSG+GK++I+ +E L A G Y LDGDN+R+G+N +L FS+ DR E
Sbjct: 457 GQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRDLGFSDADRVE 516
Query: 79 NVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQR 138
N+RR AE A++ A+ G I L SF+SP R+ AR +H EF EVFV+TP+E+CE R
Sbjct: 517 NIRRVAEVARLMADAGLIVLVSFISPFREERELARALHGEG--EFVEVFVDTPLEVCEAR 574
Query: 139 DVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLI 196
D KG Y KAR G+IK+FTG+ PYEAP+NP+L L+T E+ A VL+++ +G I
Sbjct: 575 DPKGLYAKARAGEIKNFTGIDSPYEAPENPELRLDTTGRSPEELAEQVLELLRRRGAI 632
>gnl|CDD|179661 PRK03846, PRK03846, adenylylsulfate kinase; Provisional.
Length = 198
Score = 208 bits (531), Expect = 9e-68
Identities = 79/185 (42%), Positives = 116/185 (62%), Gaps = 2/185 (1%)
Query: 14 RDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSE 73
R+ G + L F GLSG+GK++++ +E L G+ Y LDGDN+R+G+ ++L FS+
Sbjct: 16 REQLHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDLGFSD 75
Query: 74 EDRNENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVE 133
DR EN+RR E AK+ + G + L +F+SP A R RE R EF EVFV+TP+
Sbjct: 76 ADRKENIRRVGEVAKLMVDAGLVVLTAFISPHRAERQMVRE--RLGEGEFIEVFVDTPLA 133
Query: 134 ICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAK 193
ICE RD KG YKKAR G+I++FTG+ YEAP++P++ L+T V +LD + +
Sbjct: 134 ICEARDPKGLYKKARAGEIRNFTGIDSVYEAPESPEIHLDTGEQLVTNLVEQLLDYLRQR 193
Query: 194 GLIPA 198
+I +
Sbjct: 194 DIIRS 198
>gnl|CDD|129547 TIGR00455, apsK, adenylylsulfate kinase (apsK). This protein,
adenylylsulfate kinase, is often found as a fusion
protein with sulfate adenylyltransferase. Important
residue (active site in E.coli) is residue 100 of the
seed alignment [Central intermediary metabolism, Sulfur
metabolism].
Length = 184
Score = 203 bits (519), Expect = 4e-66
Identities = 83/177 (46%), Positives = 116/177 (65%), Gaps = 2/177 (1%)
Query: 14 RDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSE 73
R G + + GLSG+GK++I+ +E L ++G Y LDGDN+R+G+N +L FSE
Sbjct: 10 RQALNGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKDLGFSE 69
Query: 74 EDRNENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVE 133
EDR EN+RR E AK+F G I + SF+SP A R RE+ EF EVFV+ P+E
Sbjct: 70 EDRKENIRRIGEVAKLFVRNGIIVITSFISPYRADRQMVRELIEKG--EFIEVFVDCPLE 127
Query: 134 ICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMI 190
+CEQRD KG YKKAR G+IK FTG+ PYEAP+NP+++L+T E+C +++ +
Sbjct: 128 VCEQRDPKGLYKKARNGEIKGFTGIDSPYEAPENPEVVLDTDQNDREECVGQIIEKL 184
>gnl|CDD|179157 PRK00889, PRK00889, adenylylsulfate kinase; Provisional.
Length = 175
Score = 172 bits (439), Expect = 3e-54
Identities = 73/171 (42%), Positives = 97/171 (56%), Gaps = 4/171 (2%)
Query: 27 FPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAEC 86
F GLSGAGKT+I+ + L G P LDGD +R ++ L FS+EDR+ N+RR
Sbjct: 9 FTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSKGLGFSKEDRDTNIRRIGFV 68
Query: 87 AKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKK 146
A + G I L S +SP R+ R N F EVFV+ P+E+CEQRDVKG Y K
Sbjct: 69 ANLLTRHGVIVLVSAISPYRETREEVRANIGN----FLEVFVDAPLEVCEQRDVKGLYAK 124
Query: 147 AREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIP 197
AR G+IK FTG+ PYE P NP++ T +E+ + VL + G +
Sbjct: 125 ARAGEIKHFTGIDDPYEPPLNPEVECRTDLESLEESVDKVLQKLEELGYLV 175
>gnl|CDD|180124 PRK05537, PRK05537, bifunctional sulfate adenylyltransferase
subunit 1/adenylylsulfate kinase protein; Validated.
Length = 568
Score = 175 bits (446), Expect = 4e-51
Identities = 77/175 (44%), Positives = 109/175 (62%), Gaps = 2/175 (1%)
Query: 23 ICLLFPGLSGAGKTSISFQIESYLIAQ-GIPAYALDGDNLRNGINANLAFSEEDRNENVR 81
+ F GLSGAGK++I+ + L+ G P LDGD +R +++ L FS+EDR+ N+
Sbjct: 393 FTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSSELGFSKEDRDLNIL 452
Query: 82 RAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVK 141
R A + G IA+C+ ++P A R RE+ F EV V TP+E+CEQRD K
Sbjct: 453 RIGFVASEITKNGGIAICAPIAPYRATRREVREMIEAYG-GFIEVHVATPLEVCEQRDRK 511
Query: 142 GHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLI 196
G Y KAREGKIK FTG+S PYE P NP+L+++T NV ++CA+ +L + KG +
Sbjct: 512 GLYAKAREGKIKGFTGISDPYEPPANPELVIDTTNVTPDECAHKILLYLEEKGYL 566
Score = 27.7 bits (62), Expect = 7.9
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 215 IDLQWVQV-----IAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVTGEDKQ 269
+DL Q+ + G SPLKGFM ++ + L + I L V+ +
Sbjct: 32 LDLSPRQICDLELLMNGGFSPLKGFMGRADYECVLENMRLADGTLWPIPITLDVSEKFAA 91
Query: 270 RLE 272
LE
Sbjct: 92 GLE 94
>gnl|CDD|173895 cd00517, ATPS, ATP-sulfurylase. ATP-sulfurylase (ATPS), also known
as sulfate adenylate transferase, catalyzes the transfer
of an adenylyl group from ATP to sulfate, forming
adenosine 5'-phosphosulfate (APS). This reaction is
generally accompanied by a further reaction, catalyzed
by APS kinase, in which APS is phosphorylated to yield
3'-phospho-APS (PAPS). In some organisms the APS kinase
is a separate protein, while in others it is
incorporated with ATP sulfurylase in a bifunctional
enzyme that catalyzes both reactions. In bifunctional
proteins, the domain that performs the kinase activity
can be attached at the N-terminal end of the sulfurylase
unit or at the C-terminal end, depending on the
organism. While the reaction is ubiquitous among
organisms, the physiological role of the reaction
varies. In some organisms it is used to generate APS
from sulfate and ATP, while in others it proceeds in the
opposite direction to generate ATP from APS and
pyrophosphate. ATP sulfurylase can be a monomer, a
homodimer, or a homo-oligomer, depending on the
organism. ATPS belongs to a large superfamily of
nucleotidyltransferases that includes pantothenate
synthetase (PanC), phosphopantetheine
adenylyltransferase (PPAT), and the amino-acyl tRNA
synthetases. The enzymes of this family are structurally
similar and share a dinucleotide-binding domain.
Length = 353
Score = 85.0 bits (211), Expect = 5e-19
Identities = 24/66 (36%), Positives = 38/66 (57%)
Query: 207 LPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVTGE 266
LP +++ DL ++++AEG SPL GFM E ++L + L + IVL V+ E
Sbjct: 1 LPSVELSERDLCDLEMLAEGGFSPLTGFMTEADYLSVLEEMRLLDGTLWPIPIVLDVSEE 60
Query: 267 DKQRLE 272
D +RL+
Sbjct: 61 DAKRLK 66
>gnl|CDD|206474 pfam14306, PUA_2, PUA-like domain. This PUA like domain is found
at the N-terminus of ATP-sulfurylase enzymes.
Length = 159
Score = 80.2 bits (199), Expect = 1e-18
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 205 EALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVT 264
E+LP +++ +L ++++A G SPL GFM E ++L + L + + I L V+
Sbjct: 26 ESLPSIELSSRELSDLELLAIGGFSPLTGFMGEADYLSVLEEMRLADGLLWPIPITLDVS 85
Query: 265 GEDKQRLE 272
ED L+
Sbjct: 86 EEDADGLK 93
>gnl|CDD|235498 PRK05541, PRK05541, adenylylsulfate kinase; Provisional.
Length = 176
Score = 77.4 bits (191), Expect = 2e-17
Identities = 46/145 (31%), Positives = 76/145 (52%), Gaps = 6/145 (4%)
Query: 29 GLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAK 88
GL+G+GKT+I+ + L + LDGD LR I + + ++ R E + A+ AK
Sbjct: 14 GLAGSGKTTIAKALYERLKLKYSNVIYLDGDELRE-ILGHYGYDKQSRIEMALKRAKLAK 72
Query: 89 MFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAR 148
A+ G I + + +S D +R +FEV++ +E +RD KG Y KA
Sbjct: 73 FLADQGMIVIVTTIS----MFDEIYAYNRKHLPNYFEVYLKCDMEELIRRDQKGLYTKAL 128
Query: 149 EGKIKSFTGVSQPYEAPKNPDLILE 173
+G+IK+ GV P++ P DL+++
Sbjct: 129 KGEIKNVVGVDIPFDEP-KADLVID 152
>gnl|CDD|232928 TIGR00339, sopT, ATP sulphurylase. This enzyme forms adenosine
5'-phosphosulfate (APS) from ATP and free sulfate, the
first step in the formation of the activated sulfate
donor 3'-phosphoadenylylsulfate (PAPS). In some cases,
it is found in a bifunctional protein in which the other
domain, APS kinase, catalyzes the second and final step,
the phosphorylation of APS to PAPS; the combined ATP
sulfurylase/APS kinase may be called PAPS synthase.
Members of this family also include the dissimilatory
sulfate adenylyltransferase (sat) of the sulfate reducer
Archaeoglobus fulgidus [Central intermediary metabolism,
Sulfur metabolism].
Length = 383
Score = 65.5 bits (160), Expect = 3e-12
Identities = 20/68 (29%), Positives = 33/68 (48%)
Query: 204 IEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAV 263
E+LP + + L ++++ G SPL+GFM E ++ + L V SV I L +
Sbjct: 24 AESLPSITLSDRQLCDLELLGNGAFSPLEGFMNEADYDSVVEDMRLSDGVLFSVPITLDI 83
Query: 264 TGEDKQRL 271
ED +
Sbjct: 84 DDEDADDI 91
>gnl|CDD|222307 pfam13671, AAA_33, AAA domain. This family of domains contain only
a P-loop motif, that is characteristic of the AAA
superfamily. Many of the proteins in this family are
just short fragments so there is no Walker B motif.
Length = 143
Score = 44.2 bits (105), Expect = 1e-05
Identities = 23/117 (19%), Positives = 38/117 (32%), Gaps = 9/117 (7%)
Query: 29 GLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAK 88
GL G+GK S L G A L D LR + + R +
Sbjct: 6 GLPGSGK---STFARRLLRELG--AVVLSSDTLRKRLRGDGPPDISYYARASGRVYQRLL 60
Query: 89 MFAECGFIALCSFV----SPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVK 141
A A + + + R R ++ R V++ P E+ +R+ +
Sbjct: 61 ELAREALRAGRPVIVDATNLSREERARLIDLARRYGAPVRIVYLEAPEEVLRERNAQ 117
>gnl|CDD|238979 cd02021, GntK, Gluconate kinase (GntK) catalyzes the phosphoryl
transfer from ATP to gluconate. The resulting product
gluconate-6-phoshate is an important precursor of
gluconate metabolism. GntK acts as a dimmer composed of
two identical subunits.
Length = 150
Score = 42.2 bits (100), Expect = 5e-05
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 21/132 (15%)
Query: 29 GLSGAGKTSISFQIESYLIAQ-GIPAYALDGDNLRNGIN-----ANLAFSEEDRN---EN 79
G+SG+GK+++ L + G P + +DGD+L N A + ++EDR +
Sbjct: 6 GVSGSGKSTVG----KALAERLGAP-F-IDGDDLHPPANIAKMAAGIPLNDEDRWPWLQA 59
Query: 80 VRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRD 139
+ A A G + CS + RD R N + F V ++ P E+ +R
Sbjct: 60 LTDALLAKLASAGEGVVVACSALK--RIYRDILRGGAANPRVRF--VHLDGPREVLAERL 115
Query: 140 --VKGHYKKARE 149
KGH+ A
Sbjct: 116 AARKGHFMPADL 127
>gnl|CDD|235227 PRK04149, sat, sulfate adenylyltransferase; Reviewed.
Length = 391
Score = 43.7 bits (104), Expect = 6e-05
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 205 EALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVT 264
E+LPR+++ +++IA G SPL GFM +++ + L + + S+ I L V+
Sbjct: 29 ESLPRIELDERAASDLEMIAIGGFSPLTGFMGREDYDSVVEEMRLANGLVWSIPITLDVS 88
Query: 265 GEDKQRLE 272
ED L+
Sbjct: 89 EEDAASLK 96
>gnl|CDD|233355 TIGR01313, therm_gnt_kin, carbohydrate kinase, thermoresistant
glucokinase family. This model represents a subfamily
of proteins that includes thermoresistant and
thermosensitve isozymes of gluconate kinase
(gluconokinase) in E. coli and other related proteins;
members of this family are often named by similarity to
the thermostable isozyme. These proteins show homology
to shikimate kinases and adenylate kinases but not to
gluconate kinases from the FGGY family of carbohydrate
kinases.
Length = 163
Score = 35.5 bits (82), Expect = 0.010
Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 22/129 (17%)
Query: 29 GLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN-----ANLAFSEEDRN---ENV 80
G++G+GK++I+ + L A+ I +GD+L N A + +++DR +N+
Sbjct: 5 GVAGSGKSTIASALAHRLGAKFI-----EGDDLHPAANIEKMSAGIPLNDDDRWPWLQNL 59
Query: 81 RRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQR-- 138
A+ A + G I CS + RD R NL F ++++ ++ +R
Sbjct: 60 NDASTAAAAKNKVGIIT-CS--ALKRHYRDILR--EAEPNLHF--IYLSGDKDVILERMK 112
Query: 139 DVKGHYKKA 147
KGH+ KA
Sbjct: 113 ARKGHFMKA 121
>gnl|CDD|224957 COG2046, MET3, ATP sulfurylase (sulfate adenylyltransferase)
[Inorganic ion transport and metabolism].
Length = 397
Score = 35.8 bits (83), Expect = 0.019
Identities = 19/66 (28%), Positives = 33/66 (50%)
Query: 207 LPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVTGE 266
LPR+++ +++IA G SPL GFM E ++ + L + + I L V+ E
Sbjct: 28 LPRIELDQNSFGDLELIAYGAFSPLTGFMNEKDYESVVESMRLANGTLWPIPITLDVSEE 87
Query: 267 DKQRLE 272
+ + L
Sbjct: 88 EAEELS 93
>gnl|CDD|236153 PRK08116, PRK08116, hypothetical protein; Validated.
Length = 268
Score = 35.4 bits (82), Expect = 0.023
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 15 DFKE-GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANL-AFS 72
F+E + N+ LL G G GKT ++ I + LI +G+P ++ L N I + +
Sbjct: 106 KFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSG 165
Query: 73 EEDRNENVRRAAEC 86
+ED NE +R
Sbjct: 166 KEDENEIIRSLVNA 179
>gnl|CDD|185549 PTZ00311, PTZ00311, phosphoenolpyruvate carboxykinase; Provisional.
Length = 561
Score = 33.9 bits (78), Expect = 0.078
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 11/44 (25%)
Query: 5 CNEGKESWLRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIA 48
N GK+ ++ L F GLSG GKT++S LI
Sbjct: 250 ANVGKKG----------DVTLFF-GLSGTGKTTLSADPNRKLIG 282
>gnl|CDD|236509 PRK09427, PRK09427, bifunctional indole-3-glycerol phosphate
synthase/phosphoribosylanthranilate isomerase;
Provisional.
Length = 454
Score = 31.7 bits (73), Expect = 0.44
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 17/78 (21%)
Query: 72 SEEDRNENVRR------------AAECAKMFAECGFIA--LCSFV--SPTAAARDRAREI 115
+E+D VR+ + AK + G + L FV SP + ++A+EI
Sbjct: 243 AEDDLELAVRKLILGENKVCGLTRPQDAKAAYDAGAVYGGLI-FVEKSPRYVSLEQAQEI 301
Query: 116 HRNANLEFFEVFVNTPVE 133
A L + VF N +E
Sbjct: 302 IAAAPLRYVGVFRNADIE 319
>gnl|CDD|221983 pfam13207, AAA_17, AAA domain.
Length = 114
Score = 30.0 bits (67), Expect = 0.50
Identities = 23/121 (19%), Positives = 47/121 (38%), Gaps = 13/121 (10%)
Query: 29 GLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAK 88
G G+GK++++ ++ L GIP +LD G+ +D + ++ E
Sbjct: 6 GPPGSGKSTLAKKLAEKL---GIPVISLDDLLREEGLAELDDGELDDIDIDLELLEEILD 62
Query: 89 MFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAR 148
A+ ++ S + A + VF++ P+ C R +K ++ R
Sbjct: 63 ELAKQEWVIDGVRESTLELRLEEADLV----------VFLDLPLPACRFRLLKRRLQRGR 112
Query: 149 E 149
Sbjct: 113 G 113
>gnl|CDD|214580 smart00242, MYSc, Myosin. Large ATPases. ATPase; molecular motor.
Muscle contraction consists of a cyclical interaction
between myosin and actin. The core of the myosin
structure is similar in fold to that of kinesin.
Length = 677
Score = 31.0 bits (71), Expect = 0.67
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 13 LRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQG 50
+ + KE Q ++ G SGAGKT + +I YL +
Sbjct: 86 MLNDKENQ---SIIISGESGAGKTENTKKIMQYLASVS 120
>gnl|CDD|180668 PRK06719, PRK06719, precorrin-2 dehydrogenase; Validated.
Length = 157
Score = 29.5 bits (66), Expect = 1.0
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 216 DLQWVQVIAEGWSSPLK--GFMREDEFLKTI 244
D QWV V+++G S G +R DE++ TI
Sbjct: 93 DFQWVNVVSDGTESSFHTPGVIRNDEYVVTI 123
>gnl|CDD|238991 cd02034, CooC, The accessory protein CooC, which contains a
nucleotide-binding domain (P-loop) near the N-terminus,
participates in the maturation of the nickel center of
carbon monoxide dehydrogenase (CODH). CODH from
Rhodospirillum rubrum catalyzes the reversible
oxidation of CO to CO2. CODH contains a
nickel-iron-sulfur cluster (C-center) and an
iron-sulfur cluster (B-center). CO oxidation occurs at
the C-center. Three accessory proteins encoded by
cooCTJ genes are involved in nickel incorporation into
a nickel site. CooC functions as a nickel insertase
that mobilizes nickel to apoCODH using energy released
from ATP hydrolysis. CooC is a homodimer and has NTPase
activities. Mutation at the P-loop abolishs its
function.
Length = 116
Score = 28.7 bits (65), Expect = 1.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 32 GAGKTSISFQIESYLIAQGIPAYALDGD 59
G GKT+I+ + YL +G P A+D D
Sbjct: 9 GVGKTTIAALLARYLAEKGKPVLAIDAD 36
>gnl|CDD|238270 cd00484, PEPCK_ATP, Phosphoenolpyruvate carboxykinase (PEPCK), a
critical gluconeogenic enzyme, catalyzes the first
committed step in the diversion of tricarboxylic acid
cycle intermediates toward gluconeogenesis. It catalyzes
the reversible decarboxylation and phosphorylation of
oxaloacetate to yield phosphoenolpyruvate and carbon
dioxide, using a nucleotide molecule (ATP) for the
phosphoryl transfer, and has a strict requirement for
divalent metal ions for activity. PEPCK's separate into
two phylogenetic groups based on their nucleotide
substrate specificity, this model describes the
ATP-dependent groups.
Length = 508
Score = 29.9 bits (68), Expect = 1.4
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 18 EGQSNICLLFPGLSGAGKTSISFQIESYLI 47
G+ LF GLSG GKT++S LI
Sbjct: 205 VGKKGDVALFFGLSGTGKTTLSADPNRKLI 234
>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins. Myosin I
generates movement at the leading edge in cell motility,
and class I myosins have been implicated in phagocytosis
and vesicle transport. Myosin I, an unconventional
myosin, does not form dimers. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the plus
end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 674
Score = 29.9 bits (68), Expect = 1.7
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 13 LRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIA 48
++ E Q C++ G SGAGKT + +I Y+ A
Sbjct: 80 MKSENENQ---CVIISGESGAGKTEAAKKIMQYIAA 112
>gnl|CDD|222854 PHA02518, PHA02518, ParA-like protein; Provisional.
Length = 211
Score = 29.0 bits (65), Expect = 2.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 32 GAGKTSISFQIESYLIAQGIPAYALDGD 59
GAGKT+++ + S+L A G +D D
Sbjct: 11 GAGKTTVATNLASWLHADGHKVLLVDLD 38
>gnl|CDD|225804 COG3265, GntK, Gluconate kinase [Carbohydrate transport and
metabolism].
Length = 161
Score = 28.4 bits (64), Expect = 2.3
Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 22/129 (17%)
Query: 29 GLSGAGKTSISFQIESYLIAQGIPAYALDGDNL-----RNGINANLAFSEEDRN---ENV 80
G+SG+GK+++ + L A+ I DGD+L ++A + +++DR E +
Sbjct: 2 GVSGSGKSTVGSALAERLGAKFI-----DGDDLHPPANIEKMSAGIPLNDDDRWPWLEAL 56
Query: 81 RRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQR-- 138
AA + IA CS A + R++ R AN V+++ ++ +R
Sbjct: 57 GDAAASLAQKNKHVVIA-CS------ALKRSYRDLLREANPGLRFVYLDGDFDLILERMK 109
Query: 139 DVKGHYKKA 147
KGH+ A
Sbjct: 110 ARKGHFMPA 118
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase
fold. The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons,
ATPase subunits of proteases, helicases, or
nucleic-acid stimulated ATPases. The AAA+ proteins
contain several distinct features in addition to the
conserved alpha-beta-alpha core domain structure and
the Walker A and B motifs of the P-loop NTPases.
Length = 151
Score = 28.3 bits (63), Expect = 2.7
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Query: 11 SWLRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLA 70
LR+ E LL G G GKT+++ I + L G P L+ +L G L
Sbjct: 8 EALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEG----LV 63
Query: 71 FSEEDRNENVRRAAE 85
+E + VR E
Sbjct: 64 VAELFGHFLVRLLFE 78
>gnl|CDD|178207 PLN02597, PLN02597, phosphoenolpyruvate carboxykinase [ATP].
Length = 555
Score = 29.0 bits (65), Expect = 2.7
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 11/43 (25%)
Query: 5 CNEGKESWLRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLI 47
CN GK+ ++ L F GLSG GKT++S YLI
Sbjct: 240 CNMGKDG----------DVALFF-GLSGTGKTTLSTDPNRYLI 271
>gnl|CDD|182097 PRK09825, idnK, D-gluconate kinase; Provisional.
Length = 176
Score = 28.5 bits (63), Expect = 2.7
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 14/80 (17%)
Query: 29 GLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINAN-----LAFSEEDR---NENV 80
G+SG+GK+ I +I + A+ I DGD+L N + + ++EDR E +
Sbjct: 10 GVSGSGKSLIGSKIAALFSAKFI-----DGDDLHPAKNIDKMSQGIPLTDEDRLPWLERL 64
Query: 81 RRAAECAKMFAECGFIALCS 100
A+ E GFI +CS
Sbjct: 65 NDASYSLYKKNETGFI-VCS 83
>gnl|CDD|216417 pfam01293, PEPCK_ATP, Phosphoenolpyruvate carboxykinase.
Length = 467
Score = 29.0 bits (66), Expect = 3.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 26 LFPGLSGAGKTSISFQIESYLI 47
LF GLSG GKT++S LI
Sbjct: 215 LFFGLSGTGKTTLSADPNRRLI 236
>gnl|CDD|223718 COG0645, COG0645, Predicted kinase [General function prediction
only].
Length = 170
Score = 28.1 bits (63), Expect = 3.4
Identities = 23/118 (19%), Positives = 39/118 (33%), Gaps = 13/118 (11%)
Query: 29 GLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECA- 87
GL G+GK++++ + L A L D +R + + A
Sbjct: 8 GLPGSGKSTLARGLAELL-----GAIRLRSDVIRKRLFGVPEETRGPAGLYSPAATAAVY 62
Query: 88 KMFAECGFIALCSFVSPTAAA-------RDRAREIHRNANLEFFEVFVNTPVEICEQR 138
+ L S S A R AR + R+ + F + + P E+ R
Sbjct: 63 DELLGRAELLLSSGHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGR 120
>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl)
small GTPases. Arf (ADP-ribosylation factor)/Arl
(Arf-like) small GTPases. Arf proteins are activators
of phospholipase D isoforms. Unlike Ras proteins they
lack cysteine residues at their C-termini and therefore
are unlikely to be prenylated. Arfs are N-terminally
myristoylated. Members of the Arf family are regulators
of vesicle formation in intracellular traffic that
interact reversibly with membranes of the secretory and
endocytic compartments in a GTP-dependent manner. They
depart from other small GTP-binding proteins by a
unique structural device, interswitch toggle, that
implements front-back communication from N-terminus to
the nucleotide binding site. Arf-like (Arl) proteins
are close relatives of the Arf, but only Arl1 has been
shown to function in membrane traffic like the Arf
proteins. Arl2 has an unrelated function in the folding
of native tubulin, and Arl4 may function in the
nucleus. Most other Arf family proteins are so far
relatively poorly characterized. Thus, despite their
significant sequence homologies, Arf family proteins
may regulate unrelated functions.
Length = 158
Score = 27.9 bits (63), Expect = 3.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 24 CLLFPGLSGAGKTSISFQIESYLIAQGIP 52
+L GL GAGKT+I ++++ + IP
Sbjct: 1 RILMLGLDGAGKTTILYKLKLGEVVTTIP 29
>gnl|CDD|212685 cd11735, HSPA12A_like_NBD, Nucleotide-binding domain of HSPA12A and
similar proteins. HSPA12A (also known as 70-kDa heat
shock protein-12A) belongs to the heat shock protein 70
(HSP70) family of chaperones that assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Typically, HSP70s
have a nucleotide-binding domain (NBD) and a
substrate-binding domain (SBD). The nucleotide sits in a
deep cleft formed between the two lobes of the NBD. The
two subdomains of each lobe change conformation between
ATP-bound, ADP-bound, and nucleotide-free states. ATP
binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). No co-chaperones have yet been
identified for HSPA12A. The gene encoding HSPA12A maps
to 10q26.12, a cytogenetic region that might represent a
common susceptibility locus for both schizophrenia and
bipolar affective disorder; reduced expression of
HSPA12A has been shown in the prefrontal cortex of
subjects with schizophrenia. HSPA12A is also a candidate
gene for forelimb-girdle muscular anomaly, an autosomal
recessive disorder of Japanese black cattle. HSPA12A is
predominantly expressed in neuronal cells. It may play a
role in the atherosclerotic process.
Length = 467
Score = 28.5 bits (63), Expect = 3.9
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 198 ARQFFFIEALPRL------DIGVIDLQWVQVIAEGWSSPLKGFMRE 237
A Q+F +AL L + +++WV + W P K FMR+
Sbjct: 116 ALQYFKEQALKELSDQAGSEFENSEVRWVITVPAIWKQPAKQFMRQ 161
>gnl|CDD|238540 cd01120, RecA-like_NTPases, RecA-like NTPases. This family
includes the NTP binding domain of F1 and V1 H+ATPases,
DnaB and related helicases as well as bacterial RecA
and related eukaryotic and archaeal recombinases. This
group also includes bacterial conjugation proteins and
related DNA transfer proteins involved in type II and
type IV secretion.
Length = 165
Score = 27.8 bits (62), Expect = 4.7
Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 25 LLFPGLSGAGKTSISFQIESYLIAQGIP-AYALDGDNLRNGINANLAFSEEDRNENVRRA 83
+L G +G+GKT+++ Q+ + +G Y + + + S + +N+
Sbjct: 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIV 61
Query: 84 AECAKMFAE 92
A A
Sbjct: 62 FATADDPAA 70
>gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain).
Length = 679
Score = 28.4 bits (64), Expect = 5.0
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 13 LRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIA 48
+ KE Q C++ G SGAGKT + ++ YL +
Sbjct: 79 MLRDKENQ---CIVISGESGAGKTENTKKLMQYLAS 111
>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1).
ARD1 (ADP-ribosylation factor domain protein 1) is an
unusual member of the Arf family. In addition to the
C-terminal Arf domain, ARD1 has an additional 46-kDa
N-terminal domain that contains a RING finger domain,
two predicted B-Boxes, and a coiled-coil protein
interaction motif. This domain belongs to the TRIM
(tripartite motif) or RBCC (RING, B-Box, coiled-coil)
family. Like most Arfs, the ARD1 Arf domain lacks
detectable GTPase activity. However, unlike most Arfs,
the full-length ARD1 protein has significant GTPase
activity due to the GAP (GTPase-activating protein)
activity exhibited by the 46-kDa N-terminal domain. The
GAP domain of ARD1 is specific for its own Arf domain
and does not bind other Arfs. The rate of GDP
dissociation from the ARD1 Arf domain is slowed by the
adjacent 15 amino acids, which act as a GDI
(GDP-dissociation inhibitor) domain. ARD1 is
ubiquitously expressed in cells and localizes to the
Golgi and to the lysosomal membrane. Two Tyr-based
motifs in the Arf domain are responsible for Golgi
localization, while the GAP domain controls lysosomal
localization.
Length = 169
Score = 27.7 bits (61), Expect = 5.3
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 29 GLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFS 72
GL GAGKT+I F+++ Q IP G N+ NL F+
Sbjct: 6 GLDGAGKTTILFKLKQDEFMQPIPTI---GFNVETVEYKNLKFT 46
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only
detects a fraction of this vast family. The poorly
conserved N-terminal helix is missing from the
alignment.
Length = 148
Score = 27.3 bits (60), Expect = 5.4
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 24 CLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNG 64
+L G G+GKT+++ + L G +DG+++
Sbjct: 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEE 44
>gnl|CDD|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI
myosin, involved in organelle transport. This catalytic
(head) domain has ATPase activity and belongs to the
larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 674
Score = 28.1 bits (63), Expect = 5.8
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 17 KEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPA 53
EG+S +L G SGAGKT + + YL G A
Sbjct: 84 NEGKSQ-SILVSGESGAGKTETTKMLMRYLAYMGGRA 119
>gnl|CDD|226922 COG4549, COG4549, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 178
Score = 27.5 bits (61), Expect = 6.0
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 2 KEECNE-GKESWLRDFKEGQSNICLLFPGL 30
+EC + G W+ EGQ L P
Sbjct: 138 TQECGDHGAVRWIEVAAEGQDPHALEHPAP 167
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase.
Length = 321
Score = 27.8 bits (62), Expect = 7.1
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 109 RDRAREIHRNA--NLEFFEVFVN--TPVEICE--QRDVKGHYKKAREGKIKSF 155
R E+ ++A N FFE+ VN E+ + ++ K HYKK E + K
Sbjct: 20 RAATMELIKDACENWGFFEL-VNHGISHELMDEVEKMTKEHYKKCMEQRFKEM 71
>gnl|CDD|212686 cd11736, HSPA12B_like_NBD, Nucleotide-binding domain of HSPA12B and
similar proteins. Human HSPA12B (also known as 70-kDa
heat shock protein-12B, chromosome 20 open reading frame
60/C20orf60, dJ1009E24.2; the gene encoding HSPA12B maps
to 20p13) belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly, and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). No
co-chaperones have yet been identified for HSPA12B.
HSPA12B is predominantly expressed in endothelial cells,
is required for angiogenesis, and may interact with
known angiogenesis mediators. HSPA12B may be important
for host defense in microglia-mediated immune response.
HSPA12B expression is up-regulated in lipopolysaccharide
(LPS)-induced inflammatory response in the spinal cord,
and mostly located in active microglia; this induced
expression may be regulated by activation of MAPK-p38,
ERK1/2 and SAPK/JNK signaling pathways. Overexpression
of HSPA12B also protects against LPS-induced cardiac
dysfunction and involves the preserved activation of the
PI3K/Akt signaling pathway.
Length = 468
Score = 27.6 bits (61), Expect = 7.1
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 217 LQWVQVIAEGWSSPLKGFMREDEFL 241
++WV + W P K FMRE +L
Sbjct: 141 VRWVLTVPAIWKQPAKQFMREAAYL 165
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 27.5 bits (62), Expect = 7.5
Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Query: 21 SNICLLFPGLSGAGKTSI 38
I +F G SGAGKTS+
Sbjct: 24 QGITAIF-GRSGAGKTSL 40
>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain. These
ATPases belong to the P-loop NTPase family and provide
the driving force in myosin and kinesin mediated
processes.
Length = 186
Score = 27.1 bits (60), Expect = 8.3
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 22 NICLLFPGLSGAGKTSISFQIESYLIAQG-IPAYALDGDNLRNGINANLAFSEEDRNENV 80
N+C+ G +G+GKT + +E G IP D +L + NAN + NE+
Sbjct: 24 NVCIFAYGQTGSGKT---YTMEGKREGAGIIPRTVTDVIDLMDKGNANRTTAATAMNEHS 80
Query: 81 RR 82
R
Sbjct: 81 SR 82
>gnl|CDD|236471 PRK09344, PRK09344, phosphoenolpyruvate carboxykinase; Provisional.
Length = 526
Score = 27.5 bits (62), Expect = 8.4
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 26 LFPGLSGAGKTSISFQIESYLI 47
LF GLSG GKT++S LI
Sbjct: 229 LFFGLSGTGKTTLSADPNRKLI 250
>gnl|CDD|235871 PRK06835, PRK06835, DNA replication protein DnaC; Validated.
Length = 329
Score = 27.2 bits (61), Expect = 9.1
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 14 RDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQG 50
+F + N LLF G +G GKT +S I L+ +G
Sbjct: 177 ENFDKNNEN--LLFYGNTGTGKTFLSNCIAKELLDRG 211
>gnl|CDD|130492 TIGR01425, SRP54_euk, signal recognition particle protein SRP54.
This model represents examples from the eukaryotic
cytosol of the signal recognition particle protein
component, SRP54. This GTP-binding protein is a
component of the eukaryotic signal recognition particle,
along with several other protein subunits and a 7S RNA.
Some species, including Arabidopsis, have several
closely related forms. The extreme C-terminal region is
glycine-rich and lower in complexity, poorly conserved
between species, and excluded from this model.
Length = 429
Score = 27.5 bits (61), Expect = 9.6
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 2 KEECN---EGKESWLRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG 58
KE CN G E++ K+G+ N+ ++F GL G+GKT+ ++ Y +G +
Sbjct: 80 KELCNLVDPGVEAF--TPKKGKQNV-IMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCA 136
Query: 59 DNLRNG 64
D R G
Sbjct: 137 DTFRAG 142
>gnl|CDD|223203 COG0125, Tmk, Thymidylate kinase [Nucleotide transport and
metabolism].
Length = 208
Score = 26.9 bits (60), Expect = 9.8
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 27 FPGLSGAGKTSISFQIESYLIAQGIPAY 54
G+ GAGKT+ + ++ L +GI
Sbjct: 8 IEGIDGAGKTTQAELLKERLEERGIKVV 35
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.400
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,082,652
Number of extensions: 1357683
Number of successful extensions: 1416
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1402
Number of HSP's successfully gapped: 69
Length of query: 272
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 177
Effective length of database: 6,723,972
Effective search space: 1190143044
Effective search space used: 1190143044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.6 bits)