RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17388
(272 letters)
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1;
transferase, ATP sulfurylase, APS kinase, PAPS; HET:
ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5
c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Length = 630
Score = 312 bits (802), Expect = e-103
Identities = 131/275 (47%), Positives = 177/275 (64%), Gaps = 19/275 (6%)
Query: 17 KEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDR 76
+ G + GLSGAGKT++S +E YL+ GIP Y LDGDN+R G+N NL FS EDR
Sbjct: 47 RGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDR 106
Query: 77 NENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICE 136
ENVRR AE AK+FA+ G + + SF+SP R+ AR+IH A+L FFEVFV+ P+ +CE
Sbjct: 107 EENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCE 166
Query: 137 QRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLI 196
QRDVKG YKKAR G+IK FTG+ YE P+ P+L+L+T + V C V++++ + ++
Sbjct: 167 QRDVKGLYKKARAGEIKGFTGIDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQERDIV 226
Query: 197 P---------------ARQFFFIEA--LPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDE 239
P +A LP L I +D+QWVQV+AEGW++PL GFMRE E
Sbjct: 227 PVDASYEVKELYVPENKLHLAKTDAETLPALKINKVDMQWVQVLAEGWATPLNGFMRERE 286
Query: 240 FLKTIHFNTL--DSNVNQSVAIVLAVTGEDKQRLE 272
+L+ +HF+ L +N SV IVL T EDK+RL+
Sbjct: 287 YLQCLHFDCLLDGGVINLSVPIVLTATHEDKERLD 321
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1
(PAPS synthetase...; NMP-kinase fold, protein in complex
with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens}
PDB: 2pey_A* 2ax4_A*
Length = 179
Score = 275 bits (705), Expect = 1e-94
Identities = 90/178 (50%), Positives = 122/178 (68%)
Query: 19 GQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNE 78
+ GLSGAGKT++S +E YL+ GIP Y LDGDN+R G+N NL FS EDR E
Sbjct: 2 HMRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREE 61
Query: 79 NVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQR 138
NVRR AE AK+FA+ G + + SF+SP R+ AR+IH A+L FFEVFV+ P+ +CEQR
Sbjct: 62 NVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQR 121
Query: 139 DVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLI 196
DVKG YKKAR G+IK FTG+ YE P+ P+L+L+T + V C V++++ + ++
Sbjct: 122 DVKGLYKKARAGEIKGFTGIDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQERDIV 179
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics,
NPPSFA, national P protein structural and functional
analyses; 2.10A {Aeropyrum pernix}
Length = 186
Score = 275 bits (705), Expect = 2e-94
Identities = 63/181 (34%), Positives = 104/181 (57%)
Query: 13 LRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFS 72
L +K + I + GL G+GKT+I+ ++ L +G LDGD R ++ F+
Sbjct: 4 LTTYKCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGAGFT 63
Query: 73 EEDRNENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPV 132
E+R +++R A A++ A G I +CSFVSP AR+ R I + F E++V +
Sbjct: 64 REERLRHLKRIAWIARLLARNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASL 123
Query: 133 EICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAA 192
E +RD KG YKKA +G++++FTG++ PYE P+NP L+L+T + +E + + ++ A
Sbjct: 124 EEVIRRDPKGLYKKALKGELENFTGITDPYEPPENPQLVLDTESNTIEHNVSYLYSLVKA 183
Query: 193 K 193
Sbjct: 184 V 184
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold,
transferase-transferase complex; HET: ADX ANP; 1.79A
{Arabidopsis thaliana} PDB: 4fxp_A*
Length = 200
Score = 268 bits (688), Expect = 9e-92
Identities = 74/186 (39%), Positives = 105/186 (56%), Gaps = 3/186 (1%)
Query: 14 RDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSE 73
R Q + GLSG+GK++++ + L +G Y LDGDN+R+G+N +L+F
Sbjct: 17 RQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLNRDLSFKA 76
Query: 74 EDRNENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVE 133
EDR EN+RR E AK+FA+ G I + S +SP RD R + +F EVF++ P+
Sbjct: 77 EDRAENIRRVGEVAKLFADAGIICIASLISPYRTDRDACRSLLPEG--DFVEVFMDVPLS 134
Query: 134 ICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVN-VPVEKCANSVLDMIAA 192
+CE RD KG YK AR GKIK FTG+ PYE P N ++ L + A V+ +
Sbjct: 135 VCEARDPKGLYKLARAGKIKGFTGIDDPYEPPLNCEISLGREGGTSPIEMAEKVVGYLDN 194
Query: 193 KGLIPA 198
KG + A
Sbjct: 195 KGYLQA 200
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met
nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A
{Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A*
1m7h_A* 3cr7_A*
Length = 211
Score = 267 bits (686), Expect = 3e-91
Identities = 88/194 (45%), Positives = 125/194 (64%), Gaps = 7/194 (3%)
Query: 14 RDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQ-GIPAYALDGDNLRNGINANLAFS 72
R Q + + GLS +GK++++ ++E L+ + AY LDGDN+R G+N +L FS
Sbjct: 17 RTELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFS 76
Query: 73 EEDRNENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIH------RNANLEFFEV 126
E DRNEN+RR AE AK+FA+ IA+ SF+SP RD AR++H L F EV
Sbjct: 77 EADRNENIRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEV 136
Query: 127 FVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSV 186
+V+ PVE+ EQRD KG YKKAREG IK FTG+S PYEAP NP++ ++ +PV+ +
Sbjct: 137 YVDVPVEVAEQRDPKGLYKKAREGVIKEFTGISAPYEAPANPEVHVKNYELPVQDAVKQI 196
Query: 187 LDMIAAKGLIPARQ 200
+D + KG +PA++
Sbjct: 197 IDYLDTKGYLPAKK 210
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase,
transferase, sulfate metabolism, nucleotide 2 kinase;
2.95A {Thiobacillus denitrificans}
Length = 552
Score = 230 bits (589), Expect = 2e-72
Identities = 62/182 (34%), Positives = 97/182 (53%), Gaps = 2/182 (1%)
Query: 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYA-LDGDNLRNGINANLAFSEEDRNE 78
+ + F GLSGAGK++++ + + L+ G LDGD +R +++ L FS+ R+
Sbjct: 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDV 426
Query: 79 NVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQR 138
NVRR A + IA+C+ ++P R R + F E+ V TP+E CE R
Sbjct: 427 NVRRIGFVASEITKNRGIAICAPIAPYRQTRRDVRAMIEAVG-GFVEIHVATPIETCESR 485
Query: 139 DVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIPA 198
D KG Y KAR G I FTGVS PYE P+ P+L ++T + +++ +L + +G +
Sbjct: 486 DRKGLYAKARAGLIPEFTGVSDPYEVPETPELAIDTTGLAIDEAVQQILLKLEHEGYLRL 545
Query: 199 RQ 200
Sbjct: 546 EH 547
Score = 78.4 bits (193), Expect = 1e-16
Identities = 15/68 (22%), Positives = 23/68 (33%)
Query: 205 EALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVT 264
+LP LD+ ++++ G SPL GFM + + LD I L
Sbjct: 30 LSLPSLDLDWQQQCELEMLMTGAYSPLTGFMTRAQCARVESAQQLDDGSFWPSPITLTSR 89
Query: 265 GEDKQRLE 272
Sbjct: 90 DRALADRR 97
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP;
2.31A {Aquifex aeolicus}
Length = 546
Score = 217 bits (553), Expect = 3e-67
Identities = 69/175 (39%), Positives = 103/175 (58%), Gaps = 2/175 (1%)
Query: 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRR 82
C+ GL AGK++I+ + + L A+G LDGD +R ++ L FS+EDR N+ R
Sbjct: 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGLGFSKEDRITNILR 432
Query: 83 AAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKG 142
A + + +C+ VSP +AR++ R + F EVFV+ PVE+CE+RDVKG
Sbjct: 433 VGFVASEIVKHNGVVICALVSPYRSARNQVRNMMEEGK--FIEVFVDAPVEVCEERDVKG 490
Query: 143 HYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIP 197
YKKA+EG IK FTGV PYE P P++ ++T + E+ A +L+ + +G I
Sbjct: 491 LYKKAKEGLIKGFTGVDDPYEPPVAPEVRVDTTKLTPEESALKILEFLKKEGFIK 545
Score = 83.5 bits (206), Expect = 2e-18
Identities = 16/69 (23%), Positives = 32/69 (46%)
Query: 204 IEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAV 263
I+ L + I + ++++A G +PL FM E+++ + L S + I L +
Sbjct: 4 IKYLKSIQISQRSVLDLELLAVGAFTPLDRFMGEEDYRNVVESMRLKSGTLFPIPITLPM 63
Query: 264 TGEDKQRLE 272
E + L+
Sbjct: 64 EKEIAKDLK 72
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding,
T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP:
b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Length = 573
Score = 214 bits (547), Expect = 4e-66
Identities = 56/178 (31%), Positives = 95/178 (53%), Gaps = 2/178 (1%)
Query: 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYA-LDGDNLRNGINANLAFSEEDRNENVR 81
+ G +GK +I+ ++ L QG + + L GD +R+ +++ L F+ EDR+ N++
Sbjct: 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNIQ 456
Query: 82 RAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVK 141
R A A G + + ++P +R AR+ A FF V V TP+E CEQ D +
Sbjct: 457 RIAFVATELTRAGAAVIAAPIAPYEESRKFARDAVSQAG-SFFLVHVATPLEHCEQSDKR 515
Query: 142 GHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIPAR 199
G Y AR G+IK FTGV PYE P+ DL+++ V + ++ ++ ++G + +
Sbjct: 516 GIYAAARRGEIKGFTGVDDPYETPEKADLVVDFSKQSVRSIVHEIILVLESQGFLERQ 573
Score = 78.9 bits (194), Expect = 8e-17
Identities = 18/68 (26%), Positives = 32/68 (47%)
Query: 205 EALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVT 264
E+LP + + L +++I G SPL+GFM + ++ + N L S+ I L +
Sbjct: 29 ESLPAVTLTERQLCDLELIMNGGFSPLEGFMNQADYDRVCEDNRLADGNVFSMPITLDAS 88
Query: 265 GEDKQRLE 272
E +
Sbjct: 89 QEVIDEKK 96
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding
motif, ATP- binding, nucleotide-binding, transferase;
HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB:
3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Length = 260
Score = 98.0 bits (244), Expect = 1e-24
Identities = 26/183 (14%), Positives = 66/183 (36%), Gaps = 15/183 (8%)
Query: 25 LLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAA 84
++ GL G GK++ S + L I L D +R + +E E ++++
Sbjct: 7 IILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRE----SFPVWKEKYEEFIKKST 62
Query: 85 ECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHY 144
A + + + + R I + N + +++ +++ +R+++
Sbjct: 63 YRLIDSALKNYWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGE 122
Query: 145 KKAREGKIKSFTGVSQPYEAP------KNPDLILETVN-VPVEKCANSVLDMIAAKGLIP 197
K E + + ++ P P LI++T + + A +++
Sbjct: 123 KIPNE----VIKKMYEKFDEPGKKYKWDEPFLIIDTTKDIDFNEIAKKLIEKSKEIPKFY 178
Query: 198 ARQ 200
+
Sbjct: 179 VLE 181
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 70.3 bits (172), Expect = 6e-15
Identities = 29/189 (15%), Positives = 62/189 (32%), Gaps = 21/189 (11%)
Query: 20 QSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNEN 79
Q+ ++ G GKT++S +A G+ L D + + L +S+ + +
Sbjct: 3 QTPALIIVTGHPATGKTTLS-----QALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRR 57
Query: 80 VRRAA-----ECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEI 134
V A A + G + +R + +H A ++ ++
Sbjct: 58 VGATAIMMLYHTAATILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDV 117
Query: 135 CEQRDVKGHYKKAREGK------IKSFTGVSQPYEAP----KNPDLILETVNVPVEKCAN 184
+R + + AR V + P P L ++T P + N
Sbjct: 118 LVERILSRIAQGARHPGHCDDRSPADLELVRSRGDIPPLPLGGPLLTVDTTF-PEQIDMN 176
Query: 185 SVLDMIAAK 193
+++ +
Sbjct: 177 AIVQWVRQH 185
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 64.0 bits (155), Expect = 1e-12
Identities = 30/180 (16%), Positives = 56/180 (31%), Gaps = 23/180 (12%)
Query: 25 LLFPGLSGAGKTSISFQIESYLIAQGI----------PAYALDGDNLRNGINANLAFSEE 74
++ G S AGK+ I ++S L + + +A+ S
Sbjct: 6 IILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIG 65
Query: 75 DRNENVRRA-AECAKMFAECGF--IALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTP 131
+ A AE A G I F+ A + R +L+ V V
Sbjct: 66 PEFRALEGAWAEGVVAMARAGARIIIDDVFLGG---AAAQERWRSFVGDLDVLWVGVRCD 122
Query: 132 VEICEQRDVKGHYKKAREGKIKSFTGVSQ-PYEAPKNPDLILETVNVPVEKCANSVLDMI 190
+ E R+ AR ++ D+ ++T + +CA ++ +
Sbjct: 123 GAVAEGRE------TARGDRVAGMAAKQAYVVHEGVEYDVEVDTTHKESIECAWAIAAHV 176
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function
initiative, EFI, STRU genomics, transferase; 1.60A
{Janibacter SP}
Length = 200
Score = 62.4 bits (151), Expect = 6e-12
Identities = 36/195 (18%), Positives = 72/195 (36%), Gaps = 26/195 (13%)
Query: 10 ESWLRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN--- 66
+ + G+ ++ G+SG+GKT+I+ + +A + D + N
Sbjct: 17 NLYFQSMMTGEPTRHVVVMGVSGSGKTTIA-----HGVADETGLEFAEADAFHSPENIAT 71
Query: 67 --ANLAFSEEDRNENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFF 124
+ ++EDR +R AE A+ G + + + RD RE
Sbjct: 72 MQRGIPLTDEDRWPWLRSLAEWMDARADAGVSTIITCSALKRTYRDVLRE----GPPSVD 127
Query: 125 EVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGV-SQ--PYEAPKNPDLILETVNV--PV 179
+ ++ P E+ + R REG + + SQ EA + + + +++ P
Sbjct: 128 FLHLDGPAEVIKGR------MSKREGHFMPASLLQSQLATLEALEPDESGI-VLDLRQPP 180
Query: 180 EKCANSVLDMIAAKG 194
E+ L +
Sbjct: 181 EQLIERALTWLDIAP 195
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 58.5 bits (141), Expect = 9e-11
Identities = 35/172 (20%), Positives = 71/172 (41%), Gaps = 25/172 (14%)
Query: 29 GLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN-----ANLAFSEEDRNENVRRA 83
G+SG+GK+++ + +A + A LDGD L N + +++DR ++
Sbjct: 15 GVSGSGKSAV-----ASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQAL 69
Query: 84 AECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH 143
+ A ++L + RD RE N +++ ++ E R
Sbjct: 70 NDAAFAMQRTNKVSLIVCSALKKHYRDLLRE----GNPNLSFIYLKGDFDVIESR----- 120
Query: 144 YKKAREGKIKSFTGV-SQ--PYEAPKN--PDLILETVNVPVEKCANSVLDMI 190
KAR+G + +Q + P D+++ ++ P+E S +++I
Sbjct: 121 -LKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVI 171
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel,
rossmann-fold, kinase fold; 1.95A {Saccharomyces
cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB:
1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Length = 511
Score = 59.3 bits (142), Expect = 3e-10
Identities = 13/66 (19%), Positives = 30/66 (45%)
Query: 207 LPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVTGE 266
+ ++ L +++I G SPL GF+ E+++ + + L ++ I L V
Sbjct: 32 ILVWNLTPRQLCDIELILNGGFSPLTGFLNENDYSSVVTDSRLADGTLWTIPITLDVDEA 91
Query: 267 DKQRLE 272
+++
Sbjct: 92 FANQIK 97
Score = 33.9 bits (76), Expect = 0.054
Identities = 13/176 (7%), Positives = 35/176 (19%), Gaps = 62/176 (35%)
Query: 22 NICLLFPGLSGAGKTSISFQIESYLIAQ-GIPAYALDGDNLRNGINANLAFSEEDRNENV 80
++ + +S + S + G Y + N + L + +
Sbjct: 395 GFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNNK----TELLSL---IQDFI 447
Query: 81 RRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDV 140
+ + +
Sbjct: 448 GSGS--------------------------------------GLIIPDQWEDDKDSVVGK 469
Query: 141 KGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLI 196
+ Y + + D+ LE+ + P+ V+ + G
Sbjct: 470 QNVYL----------------LDTSSSADIQLESADEPISHIVQKVVLFLEDNGFF 509
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 57.3 bits (138), Expect = 3e-10
Identities = 24/164 (14%), Positives = 52/164 (31%), Gaps = 10/164 (6%)
Query: 29 GLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNEN---VRRAAE 85
G +G GK++ ++ + L AY ++GD + + + E + +
Sbjct: 9 GPAGVGKSTTCKRLAAQL---DNSAY-IEGDIINHMVVGGYRPPWESDELLALTWKNITD 64
Query: 86 CAKMFAECGF-IALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHY 144
F + L P A + ++E + + T E +RD
Sbjct: 65 LTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDAL--R 122
Query: 145 KKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLD 188
KK + + V + + T ++ + V +
Sbjct: 123 KKDEQMGERCLELVEEFESKGIDERYFYNTSHLQPTNLNDIVKN 166
>1r6x_A ATP:sulfate adenylyltransferase; APS kinase-like domain; 1.40A
{Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5
Length = 395
Score = 59.3 bits (142), Expect = 3e-10
Identities = 13/66 (19%), Positives = 30/66 (45%)
Query: 207 LPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAVTGE 266
+ ++ L +++I G SPL GF+ E+++ + + L ++ I L V
Sbjct: 31 ILVWNLTPRQLCDIELILNGGFSPLTGFLNENDYSSVVTDSRLADGTLWTIPITLDVDEA 90
Query: 267 DKQRLE 272
+++
Sbjct: 91 FANQIK 96
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 55.5 bits (133), Expect = 1e-09
Identities = 30/174 (17%), Positives = 57/174 (32%), Gaps = 16/174 (9%)
Query: 25 LLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINA-----NLAFSEEDRNEN 79
LL G G+GK++I+ + + G+P D+L I L S +
Sbjct: 12 LLLSGHPGSGKSTIAEALANLP---GVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMI 68
Query: 80 VRRAAECAKMFAECGFIA-LCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQR 138
++ AA+ A +A+ G+ L V P + R + +E C R
Sbjct: 69 MQIAADVAGRYAKEGYFVILDGVVRP--DWLPAFTALARPLHYIVLRTTAAEAIERCLDR 126
Query: 139 DVKGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAA 192
+ S +E +L ++ S ++ + +
Sbjct: 127 GGDSLSDPLVVADLHSQFADLGAFEHH-----VLPVSGKDTDQALQSAINALQS 175
>1v47_A ATP sulfurylase; product binding complex, zinc, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, transferase; HET: ADX; 2.49A {Thermus
thermophilus} SCOP: b.122.1.3 c.26.1.5
Length = 349
Score = 57.0 bits (136), Expect = 1e-09
Identities = 19/67 (28%), Positives = 33/67 (49%)
Query: 204 IEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAV 263
+E LP L+IG + ++ +A G P+KGFM +E L H L + ++ I+L
Sbjct: 2 VETLPALEIGEDERLDLENLATGAFFPVKGFMTREEALSVAHEMRLPTGEVWTIPILLQF 61
Query: 264 TGEDKQR 270
+ +
Sbjct: 62 REKPRVG 68
>1jhd_A Sulfate adenylyltransferase; sulfurylase, APS, chemoautotroph,
bromide; 1.70A {Sulfur-oxidizing endosymbiont ofriftia
pachyptila} SCOP: b.122.1.3 c.26.1.5
Length = 396
Score = 53.5 bits (127), Expect = 2e-08
Identities = 15/67 (22%), Positives = 26/67 (38%)
Query: 204 IEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDEFLKTIHFNTLDSNVNQSVAIVLAV 263
E+LP + I ++ G+ SPL+GFM + + TL V ++ +
Sbjct: 28 AESLPSVVISSQAAGNAVMMGAGYFSPLQGFMNVADAMGAAEKMTLSDGSFFPVPVLCLL 87
Query: 264 TGEDKQR 270
D
Sbjct: 88 ENTDAIG 94
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure
initiati YORK structural genomics research consortium,
nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 50.5 bits (120), Expect = 8e-08
Identities = 33/172 (19%), Positives = 64/172 (37%), Gaps = 27/172 (15%)
Query: 29 GLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGIN-----ANLAFSEEDRNENVRRA 83
G+SG+GK+S+ IA+ ++GD L N + +++DR +
Sbjct: 25 GVSGSGKSSV-----GEAIAEACGYPFIEGDALHPPENIRKMSEGIPLTDDDRWPWLAAI 79
Query: 84 AECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGH 143
E ++ + + CS + + RD+ RE VF++ + +R
Sbjct: 80 GE--RLASREPVVVSCSALKR--SYRDKLRESAPG---GLAFVFLHGSESVLAER----- 127
Query: 144 YKKAREGKIKSFTGV-SQ--PYEAPKN-PDLILETVNVPVEKCANSVLDMIA 191
R G + + +Q E P+ + V P+ + L +A
Sbjct: 128 -MHHRTGHFMPSSLLQTQLETLEDPRGEVRTVAVDVAQPLAEIVREALAGLA 178
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 48.2 bits (115), Expect = 4e-07
Identities = 22/158 (13%), Positives = 46/158 (29%), Gaps = 15/158 (9%)
Query: 29 GLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGI-----NANLAFSEEDRNENVRRA 83
G G+GK++ + + IA+ Y ++ D+ R I ++++
Sbjct: 9 GCPGSGKSTWARE----FIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQ 64
Query: 84 AECAKMFAECGFIALCSFVS---PTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDV 140
+ AK G +S R + + + P +R+
Sbjct: 65 FDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNS 124
Query: 141 KGHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVP 178
K K ++S + + T P
Sbjct: 125 KRGTKAVPIDVLRSM---YKSMREYLGLPVYNGTPGKP 159
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.0 bits (108), Expect = 8e-06
Identities = 39/294 (13%), Positives = 83/294 (28%), Gaps = 88/294 (29%)
Query: 11 SWLRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGI---NA 67
L + + + N+ + G+ G+GKT + +Y + + I N
Sbjct: 142 QALLELRPAK-NVLID--GVLGSGKTW--------VALDVCLSYKVQ-CKMDFKIFWLNL 189
Query: 68 NLAFSEEDRNENVRRAAECAKMFAECGFIALCSFVS----PTAAARDRAREI-----HRN 118
S E E +++ ++ + + + S + + R + + N
Sbjct: 190 KNCNSPETVLEMLQKL--LYQI--DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 119 A--------NLEFFEVF-------VNT-PVEICEQRDVKGHYKKAREGKIKSFTGVSQPY 162
N + + F + T ++ + + + + T P
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT----PD 301
Query: 163 EAPKNPDLILETVNV-----PVEKCANS--VLDMIAAKGLIPARQFFFIEALPRLDIGVI 215
E L+L+ ++ P E + L +IA + L D
Sbjct: 302 EV---KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE---------SIRDGLATWD---- 345
Query: 216 DLQWVQVIAEGWSSPLKGFMREDEFLKTIH--FNTLDSNVNQSVAIVLAVTGED 267
W V D+ I N L+ + + L+V
Sbjct: 346 --NWKHV-------------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 45.1 bits (106), Expect = 9e-06
Identities = 18/121 (14%), Positives = 38/121 (31%), Gaps = 12/121 (9%)
Query: 29 GLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGI-----NANLAFSEEDRNENVRRA 83
G G+GK++ + + IA+ Y ++ D+ R I ++++
Sbjct: 9 GCPGSGKSTWARE----FIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQ 64
Query: 84 AECAKMFAECGFIALCSFVS---PTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDV 140
+ AK G +S R + + + P +R+
Sbjct: 65 FDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNS 124
Query: 141 K 141
K
Sbjct: 125 K 125
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 43.2 bits (102), Expect = 2e-05
Identities = 19/177 (10%), Positives = 52/177 (29%), Gaps = 29/177 (16%)
Query: 29 GLSGAGKTSISFQIESYLIAQ--GIPAYALDGDNLRNGINAN-------LAFSEEDRNEN 79
G K+++ + +++ P + G + + N ++ED
Sbjct: 8 GPDCCFKSTV-----AAKLSKELKYP--IIKGSSFELAKSGNEKLFEHFNKLADEDNVII 60
Query: 80 VRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQR- 138
R + F S + R I + V+++ + ++R
Sbjct: 61 DRFVYS--NLVYAKKFKD-YS-----ILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRL 112
Query: 139 -DVKGHYKKAREGKIKS-FTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAK 193
Y + ++ I S + +T ++ A ++ ++ +
Sbjct: 113 RVRGDEYIEGKD--IDSILELYREVMSNAGLHTYSWDTGQWSSDEIAKDIIFLVELE 167
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.3 bits (99), Expect = 1e-04
Identities = 51/304 (16%), Positives = 94/304 (30%), Gaps = 94/304 (30%)
Query: 1 MKEECNEGKES-WLRDFKEGQSNICLLFPGLSGAGKTSISFQ--IESYLIAQGIPAYALD 57
K ++ S R EG + + +F G Q + Y
Sbjct: 133 AKRPFDKKSNSALFRAVGEGNAQLVAIFGG-----------QGNTDDYF----------- 170
Query: 58 GDNLRN-------GINANLAFSEEDRNENVRRAAECAKMFAECGFIALCSFVSPTAAARD 110
+ LR+ + + FS E +E +R + K+F + G + ++ + D
Sbjct: 171 -EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ-GL-NILEWLENPSNTPD 227
Query: 111 RAREIHRNANLEFF-EVFVNTPVEIC-EQRDVKGHYKKARE----------GKIKSFTGV 158
+ ++ + ++ P+ I Q HY + +K TG
Sbjct: 228 K----------DYLLSIPISCPL-IGVIQL---AHYVVTAKLLGFTPGELRSYLKGATGH 273
Query: 159 SQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIPARQFFFI-----EALPRLDIG 213
SQ L+ + S K + FFI EA P +
Sbjct: 274 SQ--------GLVTAVA-IAETDSWESFFV-SVRKAI---TVLFFIGVRCYEAYPNTSLP 320
Query: 214 VIDLQWVQVIAEGWSSP---LKGFMREDEFLKTI-HFNT-LDSNVNQSVAIVLA------ 262
L+ EG SP + + +++ + N+ L + + V I L
Sbjct: 321 PSILEDSLENNEGVPSPMLSISN-LTQEQVQDYVNKTNSHLPA--GKQVEISLVNGAKNL 377
Query: 263 -VTG 265
V+G
Sbjct: 378 VVSG 381
Score = 40.8 bits (95), Expect = 4e-04
Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 33/127 (25%)
Query: 103 SPTA-AARDRAREIHRNANLEF--FEVFVNTPVEIC-----------EQRDVKGHYKKAR 148
S A +RA + H F ++ +N PV + + ++
Sbjct: 1639 SKAAQDVWNRA-DNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIV 1697
Query: 149 EGKIKS---FTGVSQP-----YEAPKNPDLILETVNV-P----VEKCANSVLDMIAAKGL 195
+GK+K+ F +++ + + K L+ T P +EK A L +KGL
Sbjct: 1698 DGKLKTEKIFKEINEHSTSYTFRSEK--GLLSATQFTQPALTLMEKAAFEDL---KSKGL 1752
Query: 196 IPARQFF 202
IPA F
Sbjct: 1753 IPADATF 1759
Score = 26.9 bits (59), Expect = 10.0
Identities = 18/90 (20%), Positives = 25/90 (27%), Gaps = 38/90 (42%)
Query: 195 LIPARQFF--------FIEALPRLDIGVIDLQWVQVIAEGWSSPLKGFMREDE------- 239
L+P FF F + LP P +GF +DE
Sbjct: 21 LVPTASFFIASQLQEQFNKILP--------------------EPTEGFAADDEPTTPAEL 60
Query: 240 ---FLKTIHFNTLDSNVNQSVAIVLAVTGE 266
FL + S V Q ++ E
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLNLCLTE 90
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 39.2 bits (91), Expect = 4e-04
Identities = 22/173 (12%), Positives = 45/173 (26%), Gaps = 7/173 (4%)
Query: 29 GLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAK 88
G G GKT + + L + G LR +E
Sbjct: 12 GPFGVGKTHTAHTLHERLPGSFVFEPEEMGQALRKLTPGFSGDPQEHPMWIPLMLDALQY 71
Query: 89 MFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAR 148
E + A R ++ L + P+ + +R + +
Sbjct: 72 ASREAAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDGQPQVN 131
Query: 149 EGKIKS-FTGVSQPYEAPKNPDLILETVNVPVEKCANSVLDMIAAKGLIPARQ 200
G ++ + ++T + ++ A + + L P Q
Sbjct: 132 VGTVEDRLNELRGEQFQ-----THIDTAGLGTQQVAEQIAAQVGL-TLAPPPQ 178
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase
(phospho), phosphatase, hydrolase (phosp glycolysis,
bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus}
SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A*
1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Length = 469
Score = 40.0 bits (93), Expect = 5e-04
Identities = 32/187 (17%), Positives = 57/187 (30%), Gaps = 19/187 (10%)
Query: 23 ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLR---NGINANLAFSEEDRNEN 79
++ GL GKT IS ++ YL G+P + R + F D E
Sbjct: 40 TLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEG 99
Query: 80 VRRAAECAK---------MFAECGFIALCSFVSPTAAARDRAREIHRNANLE--FFEVFV 128
++ +CA + E G +A+ + T R + F E
Sbjct: 100 LKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESIC 159
Query: 129 NTPVEICE-QRDVK----GHYKKAREGKIKSFTGVSQPYEAPKNPDLILETVNVPVEKCA 183
P I VK + + + + F + YE + ++ K
Sbjct: 160 VDPEVIAANIVQVKLGSPDYVNRDSDEATEDFMRRIECYENSYESLDEEQDRDLSYIKIM 219
Query: 184 NSVLDMI 190
+ +
Sbjct: 220 DVGQSYV 226
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3
(6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...;
bifunctional enzyme, EDTA complex; HET: F6P EDT ADP;
2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B*
3qpu_A* 3qpv_A* 3qpw_A*
Length = 520
Score = 38.9 bits (90), Expect = 0.001
Identities = 27/130 (20%), Positives = 46/130 (35%), Gaps = 14/130 (10%)
Query: 21 SNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRN---GINANLAFSEEDRN 77
S ++ GL GKT IS ++ YL G+P + R ++ F D
Sbjct: 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNE 93
Query: 78 ENVRRAAECAK---------MFAECGFIALCSFVSPTAAARDRAREIHRNANLE--FFEV 126
E ++ +CA + E G IA+ + T R + + + F E
Sbjct: 94 EAMKVRKQCALAALRDVKSYLAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIES 153
Query: 127 FVNTPVEICE 136
+ P +
Sbjct: 154 VCDDPTVVAS 163
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure
initiative, midwest CENT structural genomics, MCSG;
2.79A {Clostridium symbiosum atcc 14940}
Length = 223
Score = 35.8 bits (82), Expect = 0.008
Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 13/92 (14%)
Query: 105 TAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEA 164
+ + + ++ ++ + K R+ K FTG + +
Sbjct: 144 YTDKVKKVQRVMEVDCIDEERA-----KRRIKKIE------KERKEYYKYFTGSE--WHS 190
Query: 165 PKNPDLILETVNVPVEKCANSVLDMIAAKGLI 196
KN DL + T + +E+ A + I KG +
Sbjct: 191 MKNYDLPINTTKLTLEETAELIKAYIRLKGFM 222
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 33.9 bits (78), Expect = 0.028
Identities = 13/77 (16%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Query: 10 ESWLRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANL 69
E ++ +++ G+ L G G GKT + I + L + + + + L +
Sbjct: 42 ERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKH-- 99
Query: 70 AFSEEDRNENVRRAAEC 86
+ ++ NE + +
Sbjct: 100 SLQDQTMNEKLDYIKKV 116
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase
and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4
c.1.2.4 PDB: 1jcm_P* 2kzh_A
Length = 452
Score = 34.6 bits (80), Expect = 0.031
Identities = 38/141 (26%), Positives = 53/141 (37%), Gaps = 31/141 (21%)
Query: 13 LRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANL--- 69
LRD + L P L G T IS ES GI YA L + N L
Sbjct: 188 LRDLSIDLNRTRELAPKL-GHNVTVIS---ES-----GINTYA-QVRELSHFANGFLIGS 237
Query: 70 AF-SEEDRNENVR------------RAAECAKMFAECG--FIALCSFV--SPTAAARDRA 112
A + +D + VR + AK + G + L FV SP ++A
Sbjct: 238 ALMAHDDLHAAVRRVLLGENKVCGLTRGQDAKAAYDAGAIYGGLI-FVATSPRCVNVEQA 296
Query: 113 REIHRNANLEFFEVFVNTPVE 133
+E+ A L++ VF N +
Sbjct: 297 QEVMAAAPLQYVGVFRNHDIA 317
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.049
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 17/46 (36%)
Query: 136 EQRDVKGHYKKAREGKIKSFTGVSQPYEAP-KNPDLILETVNVPVE 180
E++ +K K + +K Y A P L + +E
Sbjct: 18 EKQALK----KL-QASLK-------LY-ADDSAPAL---AIKATME 47
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 32.2 bits (72), Expect = 0.12
Identities = 25/153 (16%), Positives = 49/153 (32%), Gaps = 19/153 (12%)
Query: 3 EECNEGKESWLRDFKEGQSN----ICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDG 58
E LR G+ + I +L G SGAGKT+I + + +DG
Sbjct: 9 SEFKHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVI---IDG 65
Query: 59 DNLRNGINANLAFSEEDRNENVRRAAECAKMFAE----------CGFIALCSFVSPTAAA 108
D+ R+ L +E ++V + A E + + +
Sbjct: 66 DSFRSQHPHYLELQQEYGKDSVEYTKDFAGKMVESLVTKLSSLGYNLLIEGTLRTVDVPK 125
Query: 109 RDRAREIHRNANLEFFEVFVNTPVEICEQRDVK 141
+ ++ ++ + T E+ +
Sbjct: 126 KTAQLLKNKGYEVQL--ALIATKPELSYLSTLI 156
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 31.2 bits (71), Expect = 0.25
Identities = 28/174 (16%), Positives = 53/174 (30%), Gaps = 27/174 (15%)
Query: 29 GLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRRAAECAK 88
GLS +GKT+++ Q+ L QGI D+ E+ E +
Sbjct: 29 GLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVEW 88
Query: 89 MFAEC-------GFIALCSFVSPTAAARDRAREIH---------------RNANLEFFEV 126
+ + + L + T R + F V
Sbjct: 89 LTHQLFRQLKASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQRKEWRPFFDFVV 148
Query: 127 FVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAPKNP----DLILETVN 176
+++ P EI R+ K+ + I + Y + P D++ + +
Sbjct: 149 YLDCPREIRFAREND-QVKQNIQKFINRYWKAEDYYLETEEPIKRADVVFDMTS 201
>2zws_A Neutral ceramidase; prism fold and beta-sandwich fold, hydrolase,
lipid metaboli secreted; HET: PLM; 1.40A {Pseudomonas
aeruginosa} PDB: 2zxc_A*
Length = 646
Score = 31.8 bits (71), Expect = 0.26
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 142 GHYKKAREGKIKSFTGVSQPYE 163
G+ K KI G ++ +E
Sbjct: 619 GNAKNFWTQKISEIGGSTRSFE 640
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG,
PRK04182 class ME structural genomics, protein structure
initiative; 2.20A {Eubacterium ventriosum}
Length = 201
Score = 31.2 bits (70), Expect = 0.27
Identities = 7/89 (7%), Positives = 29/89 (32%), Gaps = 13/89 (14%)
Query: 105 TAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEA 164
+ + + ++ + + ++ D K R+ + +
Sbjct: 124 LGDKDTKTKRVMEREGVDEKTA-----LNMMKKMD------KMRKVYHNFYCE--SKWGD 170
Query: 165 PKNPDLILETVNVPVEKCANSVLDMIAAK 193
+ D+ ++ V V+ + ++ I ++
Sbjct: 171 SRTYDICIKIGKVDVDTATDMIIKYIDSR 199
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A
{Rhodobacter sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 31.2 bits (70), Expect = 0.34
Identities = 11/54 (20%), Positives = 23/54 (42%)
Query: 29 GLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAFSEEDRNENVRR 82
G SGAG +++ + +G+ A +++GD A++ + R
Sbjct: 12 GSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDA 65
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 30.3 bits (69), Expect = 0.43
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 11 SWLRDFKEGQSNICLLFPGLSGAGKTSI 38
+ L+ K+ + + LL GL AGKT+I
Sbjct: 7 TILKKMKQKERELRLLMLGLDNAGKTTI 34
>3zvl_A Bifunctional polynucleotide phosphatase/kinase;
hydrolase-transferase complex, base excision repair,
BER, non-homologous END-joining, NHEJ; 1.65A {Mus
musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B*
3u7h_B* 3u7g_A*
Length = 416
Score = 31.0 bits (69), Expect = 0.45
Identities = 5/49 (10%), Positives = 13/49 (26%)
Query: 104 PTAAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKI 152
P +R R + ++A + +E + +
Sbjct: 319 PDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDPSHAPV 367
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 29.9 bits (68), Expect = 0.54
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 11 SWLRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIP 52
S L+ + L+F GL AGKT++ ++ + Q +P
Sbjct: 14 SVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVP 55
>2ged_A SR-beta, signal recognition particle receptor beta subunit;
protein transport, G protein, proline isomerization,
circular permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 29.7 bits (67), Expect = 0.73
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 6 NEGKESWLRDFKEGQSNICLLFPGLSGAGKTSI 38
+E Q +I + G +GKTS+
Sbjct: 34 DEKLGGGSGGGGSYQPSIIIA--GPQNSGKTSL 64
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein
COOC; Zn-bound dimer, nickel binding protein, ATPase;
1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A*
3kje_A 3kji_A*
Length = 254
Score = 29.7 bits (67), Expect = 0.75
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 32 GAGKTSISFQIESYLIAQGIPAYALDGDNLRNGINANLAF 71
G GKT+++ + + + YA+DGD ++ L
Sbjct: 10 GVGKTTVAAGLIKIMASDYDKIYAVDGD-----PDSCLGQ 44
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 29.3 bits (66), Expect = 0.94
Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 17 KEGQSNICLLFPGLSGAGKTSI 38
K Q +I + G +GKTS+
Sbjct: 9 KSYQPSIIIA--GPQNSGKTSL 28
>3llu_A RAS-related GTP-binding protein C; structural genomics
consortium, SGC, cytoplasm, nucleotide-binding,
nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens}
PDB: 2q3f_A*
Length = 196
Score = 29.2 bits (65), Expect = 1.1
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 5 CNEGKESWLRD-FKEGQSNICLLFPGLSGAGKTSI 38
+ F+ + I L+ GL +GK+SI
Sbjct: 4 HHHHSSGRENLYFQGSKPRILLM--GLRRSGKSSI 36
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 29.3 bits (65), Expect = 1.1
Identities = 24/182 (13%), Positives = 54/182 (29%), Gaps = 20/182 (10%)
Query: 29 GLSGAGKTSISFQIESYLIAQGIPAYALDGDNL--RNGINANLAFSE--------EDRNE 78
G+ G G T+ S L +G+ + ++ NL E +
Sbjct: 10 GVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPETQKR 69
Query: 79 NVRRAAECAKMFAECGFIAL---CSFVSPTAAARDRAREIHRNANLEFFEVFVNTPVEIC 135
+ A A+ +A+ + +P + N + V T EI
Sbjct: 70 IQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVETTGDEIL 129
Query: 136 EQR--DVKGHYKKAREGKIKSFTGVSQPYEAP-----KNPDLILETVNVPVEKCANSVLD 188
+R D I+ +++ I++ N +++ + +
Sbjct: 130 MRRMSDETRVRDLDTASTIEQHQFMNRCAAMSYGVLTGATVKIVQNRNGLLDQAVEELTN 189
Query: 189 MI 190
++
Sbjct: 190 VL 191
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 28.9 bits (65), Expect = 1.3
Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Query: 17 KEGQSNICLLFPGLSGAGKTSI 38
K Q + + GL +GKT +
Sbjct: 4 KSSQRAVLFV--GLCDSGKTLL 23
>3hqa_A Complement C5; C5A, anaphylatoxin, cleavage on PAIR of basic RE
complement alternate pathway, complement pathway,
cytolysis disulfide bond; 2.59A {Homo sapiens} PDB:
3hqb_A 1kjs_A 1cfa_A*
Length = 73
Score = 27.2 bits (60), Expect = 1.4
Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 10/58 (17%)
Query: 64 GINANLAFSEEDRNENVRRAAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANL 121
G N + E R + C K F EC C A++ RA H++ L
Sbjct: 25 GACVNNDETCEQRAARISLGPRCIKAFTEC-----CVV-----ASQLRANISHKDMQL 72
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 29.4 bits (66), Expect = 1.4
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 14 RDFKEGQSNICLLFPGLSGAGKT 36
R + + + +L G SGAGKT
Sbjct: 161 RSMLQDREDQSILCTGESGAGKT 183
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 28.7 bits (65), Expect = 1.4
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 11 SWLRDFKEGQSNICLLFPGLSGAGKTSI 38
L + LLF GL AGKT++
Sbjct: 12 DVLASLGLWNKHGKLLFLGLDNAGKTTL 39
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Length = 287
Score = 29.2 bits (64), Expect = 1.5
Identities = 18/143 (12%), Positives = 37/143 (25%), Gaps = 15/143 (10%)
Query: 6 NEGKESWLRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNGI 65
N+ E ++ K +S L G G+GKTS+ I I +D D +
Sbjct: 17 NDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIV---IDNDTFKQQH 73
Query: 66 NANLAFSEEDRNENVRRAAECAKMFAE----------CGFIALCSFVSPTAAARDRAREI 115
+ + V+ + E + + + +
Sbjct: 74 PNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQ 133
Query: 116 HRNANLEFFEVFVNTPVEICEQR 138
+ + + P
Sbjct: 134 AKGYETKM--YVMAVPKINSYLG 154
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex
without magnesium, ARF family, RAS superfamily,
G-domain, signaling protein; HET: MES GDP; 1.70A {Mus
musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 28.7 bits (65), Expect = 1.6
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 13 LRDFKEGQSNICLLFPGLSGAGKTSI 38
L+ + + I LL GL AGKT++
Sbjct: 9 LKSAPDQEVRILLL--GLDNAGKTTL 32
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 28.7 bits (64), Expect = 2.4
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 30 LSGAGKTSISFQIESYLIAQG 50
++GAGK SI ++ L+ G
Sbjct: 481 ITGAGKGSIGAEVLQGLLQGG 501
>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase;
2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1
Length = 524
Score = 28.1 bits (63), Expect = 3.1
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 11/44 (25%)
Query: 5 CNEGKESWLRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIA 48
N GK+ ++ + F GLSG GKT++S LI
Sbjct: 207 ANVGKQG----------DVTVFF-GLSGTGKTTLSADPHRNLIG 239
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 27.6 bits (62), Expect = 3.6
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 11 SWLRDFKEGQSNICLLFPGLSGAGKTSI 38
S L + + ++ GL AGKT+I
Sbjct: 12 SGLVPRGSQEHKVIIV--GLDNAGKTTI 37
>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine
triphosphate, T thermophilus; 2.00A {Thermus
thermophilus} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A*
2pc9_A*
Length = 529
Score = 27.7 bits (62), Expect = 4.1
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 11/35 (31%)
Query: 5 CNEGKESWLRDFKEGQSNICLLFPGLSGAGKTSIS 39
N GKE ++ + F GLSG GKT++S
Sbjct: 219 ANVGKEG----------DVAVFF-GLSGTGKTTLS 242
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 27.4 bits (60), Expect = 4.3
Identities = 27/186 (14%), Positives = 55/186 (29%), Gaps = 24/186 (12%)
Query: 29 GLSGAGKTSISFQIESYLIAQGIPAYALD-GDNLRNGINAN---------LAFSEEDRNE 78
G+ G GK+++ +++ L QGI ++ GD + S E + +
Sbjct: 8 GIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEKQKK 67
Query: 79 NVRRAAECAKMFAECGFIAL------CSFVSPTAAARDRAREIHRNANLEFFEVFVNTPV 132
AA+ A G +P+ + N + P
Sbjct: 68 LQIDAAKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFLLEADPK 127
Query: 133 EICEQR--DVKGHYKKAREGKIKSFTGVSQPYEA------PKNPDLILETVNVPVEKCAN 184
I ++ D + + + T Y A + ++ V AN
Sbjct: 128 IILSRQKRDTTRNRNDYSDESVILETINFARYAATASAVLAGSTVKVIVNVEGDPSIAAN 187
Query: 185 SVLDMI 190
++ +
Sbjct: 188 EIIRSM 193
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 27.2 bits (61), Expect = 4.3
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 16 FKEGQSNICLLFPGLSGAGKTSI--SFQIESYLIAQGIP 52
G + +L GL +GKT+I + + +P
Sbjct: 15 VPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILP 53
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 27.3 bits (61), Expect = 4.4
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 12 WLRDFKEGQSNICLLFPGLSGAGKTSI 38
+ R F + Q I ++ GL AGKT+I
Sbjct: 21 FSRIFGKKQMRILMV--GLDAAGKTTI 45
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP;
1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A*
2wwi_A*
Length = 212
Score = 27.2 bits (61), Expect = 4.4
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 27 FPGLSGAGKTSISFQIESYLIAQGIPA 53
F GL +GK++ S + YL +
Sbjct: 15 FEGLDRSGKSTQSKLLVEYLKNNNVEV 41
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding,
protein binding; HET: GDP; 3.17A {Saccharomyces
cerevisiae} SCOP: c.37.1.8
Length = 183
Score = 27.2 bits (61), Expect = 4.5
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 11 SWLRDFKEGQSNICLLFPGLSGAGKTSI 38
S + +L GL GAGKT+I
Sbjct: 7 SMFDKLWGSNKELRILILGLDGAGKTTI 34
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP,
transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP:
c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A*
1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A*
1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A*
1e9f_A*
Length = 215
Score = 27.2 bits (61), Expect = 4.8
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 27 FPGLSGAGKTSISFQIESYLIAQGIPA 53
G+ AGK++ S ++ L A G A
Sbjct: 14 LEGVDRAGKSTQSRKLVEALCAAGHRA 40
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 27.3 bits (60), Expect = 5.5
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 25 LLFPGLSGAGKTSI 38
LL G SG+GK+S+
Sbjct: 6 LLLMGRSGSGKSSM 19
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding,
transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP:
c.37.1.8
Length = 187
Score = 26.8 bits (60), Expect = 5.6
Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 16 FKEGQSNICLLFPGLSGAGKTSI 38
F + + ++ GL AGKT+I
Sbjct: 12 FNHQEHKVIIV--GLDNAGKTTI 32
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 26.8 bits (60), Expect = 6.2
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 10 ESWLRDFKEGQSNICLLFPGLSGAGKTSI 38
++ + + + +L GL AGKTSI
Sbjct: 12 QTLGLLPADRKIRVLML--GLDNAGKTSI 38
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella
burnetii}
Length = 181
Score = 26.6 bits (58), Expect = 6.8
Identities = 10/68 (14%), Positives = 19/68 (27%), Gaps = 11/68 (16%)
Query: 22 NICLLFPGLSGAGKTSISFQIESYLIAQGIPAYALD-------GDNLRNGINANLAFSEE 74
+ +L G + GK+ +S LI +G D + L +
Sbjct: 16 KMGVLITGEANIGKSELSLA----LIDRGHQLVCDDVIDLKQENNQLIGSCPSVANGYIL 71
Query: 75 DRNENVRR 82
+
Sbjct: 72 ITGIGIID 79
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family,
zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus}
SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A
2z3i_A*
Length = 130
Score = 26.3 bits (58), Expect = 7.5
Identities = 10/63 (15%), Positives = 17/63 (26%), Gaps = 6/63 (9%)
Query: 106 AAARDRAREIHRNANLEFFEVFVNTPVEICEQRDVKGHYKKAREGKIKSFTGVSQPYEAP 165
+AA I N+ + C + V G A G + +
Sbjct: 31 SAALSSDGRIFTGVNVY------HFTGGPCAELVVLGTAAAAAAGNLTCIVAIGNENRGI 84
Query: 166 KNP 168
+P
Sbjct: 85 LSP 87
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 26.7 bits (59), Expect = 7.8
Identities = 11/77 (14%), Positives = 23/77 (29%), Gaps = 4/77 (5%)
Query: 11 SWLRDFKEGQSNICLLFPGLSGAGKTSISFQIESYLIAQ-GIPAYALDGDNLRNGINANL 69
++ + + L G G GK+ + + L + G+ L + +
Sbjct: 142 DFVEQYPSAEQK-GLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKN-- 198
Query: 70 AFSEEDRNENVRRAAEC 86
A S E +
Sbjct: 199 AISNGSVKEEIDAVKNV 215
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 26.9 bits (59), Expect = 8.1
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 25 LLFPGLSGAGKTSI 38
+L G+ GK+SI
Sbjct: 2 VLLMGVRRCGKSSI 15
>4edh_A DTMP kinase, thymidylate kinase; structural genomics,
PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas
aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 3uwk_A* 3uwo_A*
3uxm_A*
Length = 213
Score = 26.4 bits (59), Expect = 8.8
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 27 FPGLSGAGKTSISFQIESYLIAQGIP 52
G GAGK++ + L +GI
Sbjct: 11 LEGPEGAGKSTNRDYLAERLRERGIE 36
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP,
replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP:
a.80.1.1 c.37.1.20
Length = 327
Score = 26.6 bits (59), Expect = 8.9
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 20/70 (28%)
Query: 25 LLFPGLSGAGKTSISFQIESYLIAQGIPAYALDGDNLRNG---INANLAFSEEDRNENVR 81
LLF G G GKT+ + + A L G+N R+ +NA S+E +R
Sbjct: 49 LLFAGPPGVGKTTAALAL----------ARELFGENWRHNFLELNA----SDERGINVIR 94
Query: 82 RAAECAKMFA 91
E K FA
Sbjct: 95 ---EKVKEFA 101
>2qlt_A (DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, saccharom
cerevisiae, structural genomics, PSI-2, protein
structure initiative; 1.60A {Saccharomyces cerevisiae}
Length = 275
Score = 26.6 bits (59), Expect = 9.3
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 105 TAAARDRAREIHRNANLEFFEVFV 128
T+ RD A++ ++ E F+
Sbjct: 138 TSGTRDMAKKWFDILKIKRPEYFI 161
>2k2q_B Surfactin synthetase thioesterase subunit; A/B-hydrolase, NRPS,
non-ribosomal peptide synthetase, type II thioesterase,
antibiotic biosynthesis; NMR {Bacillus subtilis} PDB:
2ron_A
Length = 242
Score = 26.3 bits (58), Expect = 9.7
Identities = 8/65 (12%), Positives = 22/65 (33%), Gaps = 3/65 (4%)
Query: 83 AAECAKMFAECGFIALCSFVSPTAAARDRAREIHRNANLEFFEVFVN---TPVEICEQRD 139
A+ G +S + +++ + +F + + P E+ E ++
Sbjct: 92 TFRLAQKLEREGIFPQAVIISAIQPPHIQRKKVSHLPDDQFLDHIIQLGGMPAELVENKE 151
Query: 140 VKGHY 144
V +
Sbjct: 152 VMSFF 156
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.400
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,231,490
Number of extensions: 257135
Number of successful extensions: 770
Number of sequences better than 10.0: 1
Number of HSP's gapped: 750
Number of HSP's successfully gapped: 101
Length of query: 272
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 180
Effective length of database: 4,133,061
Effective search space: 743950980
Effective search space used: 743950980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.2 bits)