BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17389
(259 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9D110|MTHFS_MOUSE 5-formyltetrahydrofolate cyclo-ligase OS=Mus musculus GN=Mthfs PE=2
SV=2
Length = 203
Score = 117 bits (294), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 96/178 (53%), Gaps = 24/178 (13%)
Query: 80 LKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSGE 139
+ H Y+ SKRISI++ DE+ T II+ I GK CFIPRY M + R T S E
Sbjct: 41 IAHNQYQNSKRISIFLSMQDEVETEVIIKDIFKQGKICFIPRYQFQSNHMDMVRLTSSEE 100
Query: 140 ATLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTE 199
L L K NI Q + + E+A+ TGGLDL+ +PG F +
Sbjct: 101 IAL-------------------LPKTSWNIHQPGEGDVREEALSTGGLDLIFLPGLGFDK 141
Query: 200 TGKRMGRGKGYYDTYLS---ELKRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVIH 254
G R+GRGKGYYDTYL + + + P+ T+ LAF Q+ +P+ +HD+ +D V++
Sbjct: 142 DGNRLGRGKGYYDTYLKRCVQHQEVKPY--TMALAFKEQICPQIPVDEHDMKVDEVLY 197
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 5 RYDKTEMTMLKLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETG 64
++ M M++L E++ L K NI Q + + E+A+ TGGLDL+ +PG F + G
Sbjct: 84 QFQSNHMDMVRLTSSEEIALLPKTSWNIHQPGEGDVREEALSTGGLDLIFLPGLGFDKDG 143
Query: 65 KRCTVSFSWPYIGCFLKHPVYEQ 87
R + Y +LK V Q
Sbjct: 144 NR--LGRGKGYYDTYLKRCVQHQ 164
>sp|P80405|MTHFS_RABIT 5-formyltetrahydrofolate cyclo-ligase OS=Oryctolagus cuniculus
GN=MTHFS PE=1 SV=1
Length = 201
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 97/176 (55%), Gaps = 20/176 (11%)
Query: 80 LKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSGE 139
+ H Y++S+RISI++ DEI T +II+ I GK CFIPRY M + +
Sbjct: 41 IAHRQYQKSQRISIFLSMPDEIETEEIIKDIFQQGKVCFIPRYRLQSNHMDMVK------ 94
Query: 140 ATLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTE 199
L +++ +L K NI Q S+++ E+A+ TGGLDL+ +PG F
Sbjct: 95 -------------LASADEISSLPKTSWNIHQPSESDTREEALATGGLDLIFMPGLGFDR 141
Query: 200 TGKRMGRGKGYYDTYLSE-LKRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVIH 254
G R+GRG+GYYDTYL L++ TI LAF Q+ +P+ D DV +D V++
Sbjct: 142 NGNRLGRGRGYYDTYLQRCLQQQGAKPYTIALAFREQICPQVPVDDTDVSVDEVLY 197
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 5 RYDKTEMTMLKLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETG 64
R M M+KL +++ +L K NI Q S+++ E+A+ TGGLDL+ +PG F G
Sbjct: 84 RLQSNHMDMVKLASADEISSLPKTSWNIHQPSESDTREEALATGGLDLIFMPGLGFDRNG 143
Query: 65 KR 66
R
Sbjct: 144 NR 145
>sp|P49914|MTHFS_HUMAN 5-formyltetrahydrofolate cyclo-ligase OS=Homo sapiens GN=MTHFS PE=1
SV=2
Length = 203
Score = 111 bits (278), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 100/182 (54%), Gaps = 24/182 (13%)
Query: 80 LKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSGE 139
+ H Y++SKRISI++ DEI T +II+ I GK CFIPRY M + R
Sbjct: 41 IAHSEYQKSKRISIFLSMQDEIETEEIIKDIFQRGKICFIPRYRFQSNHMDMVR------ 94
Query: 140 ATLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTE 199
+ E++ L K NI Q + + E+A+ TGGLDL+ +PG F +
Sbjct: 95 -------------IESPEEISLLPKTSWNIPQPGEGDVREEALSTGGLDLIFMPGLGFDK 141
Query: 200 TGKRMGRGKGYYDTYLS---ELKRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVIHPL 256
G R+GRGKGYYD YL + + + P+ T+ LAF Q+ +P++++D+ +D V++
Sbjct: 142 HGNRLGRGKGYYDAYLKRCLQHQEVKPY--TLALAFKEQICLQVPVNENDMKVDEVLYED 199
Query: 257 ST 258
S+
Sbjct: 200 SS 201
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 5 RYDKTEMTMLKLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETG 64
R+ M M+++ E++ L K NI Q + + E+A+ TGGLDL+ +PG F + G
Sbjct: 84 RFQSNHMDMVRIESPEEISLLPKTSWNIPQPGEGDVREEALSTGGLDLIFMPGLGFDKHG 143
Query: 65 KR 66
R
Sbjct: 144 NR 145
>sp|Q9XWE6|MTHFS_CAEEL Probable 5-formyltetrahydrofolate cyclo-ligase OS=Caenorhabditis
elegans GN=Y106G6E.4 PE=3 SV=1
Length = 206
Score = 94.0 bits (232), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 82/172 (47%), Gaps = 21/172 (12%)
Query: 85 YEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSGEATLRS 144
+++SKR+S+YV EI T IIQ GKE FIP++ K M + R
Sbjct: 44 FQESKRLSVYVSTSGEIQTDSIIQKALEMGKEVFIPQFTKGSTAMDMVR----------- 92
Query: 145 RVVLRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRM 204
+ DNL I Q + +TG LDL++ PG AF+ G R
Sbjct: 93 --------VPDQTAFDNLPSTLWGIRQPEPKWKWQSYHETGPLDLILAPGVAFSPYGLRC 144
Query: 205 GRGKGYYDTYLSELKRISPHC--KTIGLAFSCQMVEDLPMSDHDVPLDYVIH 254
G GKGYYD + S + P K IGLA Q++ +P+S+ DV LD VI+
Sbjct: 145 GHGKGYYDRFFSTHHKHFPENSPKKIGLALREQIIGTIPISETDVELDEVIY 196
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 9 TEMTMLKLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRC 67
T M M+++ DNL I Q + +TG LDL++ PG AF+ G RC
Sbjct: 86 TAMDMVRVPDQTAFDNLPSTLWGIRQPEPKWKWQSYHETGPLDLILAPGVAFSPYGLRC 144
>sp|P0AC28|YGFA_ECOLI Uncharacterized protein YgfA OS=Escherichia coli (strain K12)
GN=ygfA PE=1 SV=1
Length = 182
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 29/178 (16%)
Query: 80 LKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSGE 139
+ +P + +++++ D E+ T+ +I+ + +GK ++P + +G
Sbjct: 26 MTYPPVVMAHTVAVFLSFDGELDTQPLIEQLWRAGKRVYLP----------VLHPFSAG- 74
Query: 140 ATLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTE 199
L+ Y L+ N+ I H D + LD+++ P AF E
Sbjct: 75 ----------NLLFLNYHPQSELVMNRLKI--HEPKLDVRDVLPLSRLDVLITPLVAFDE 122
Query: 200 TGKRMGRGKGYYDTYLSELKRISPHCKT--IGLAFSCQMVEDLPMSDHDVPLDYVIHP 255
G+R+G G G+YD L + H KT +G A CQ+VE LP+ + D+PL V+ P
Sbjct: 123 YGQRLGMGGGFYDRTLQNWQ----HYKTQPVGYAHDCQLVEKLPVEEWDIPLPAVVTP 176
>sp|P0AC29|YGFA_ECO57 Uncharacterized protein YgfA OS=Escherichia coli O157:H7 GN=ygfA
PE=3 SV=1
Length = 182
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 29/178 (16%)
Query: 80 LKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSGE 139
+ +P + +++++ D E+ T+ +I+ + +GK ++P + +G
Sbjct: 26 MTYPPVVMAHTVAVFLSFDGELDTQPLIEQLWRAGKRVYLP----------VLHPFSAG- 74
Query: 140 ATLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTE 199
L+ Y L+ N+ I H D + LD+++ P AF E
Sbjct: 75 ----------NLLFLNYHPQSELVMNRLKI--HEPKLDVRDVLPLSRLDVLITPLVAFDE 122
Query: 200 TGKRMGRGKGYYDTYLSELKRISPHCKT--IGLAFSCQMVEDLPMSDHDVPLDYVIHP 255
G+R+G G G+YD L + H KT +G A CQ+VE LP+ + D+PL V+ P
Sbjct: 123 YGQRLGMGGGFYDRTLQNWQ----HYKTQPVGYAHDCQLVEKLPVEEWDIPLPAVVTP 176
>sp|P44905|Y858_HAEIN Uncharacterized protein HI_0858 OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0858 PE=1 SV=1
Length = 187
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 31/166 (18%)
Query: 87 QSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSGEATLRSRV 146
Q+K I++Y D EIST+ +IQ + K ++P + F + +
Sbjct: 44 QAKNIALYFSFDGEISTKALIQSLWMQNKNVYLP-------VLHPFTKHY---------- 86
Query: 147 VLRELVLHRYEDLDNLIKNKENILQHSQTEP---TEDAMKTGGLDLVVVPGRAFTETGKR 203
L+ RY + +N+ I EP ++ + LD++ P AF + G R
Sbjct: 87 ----LLFLRYLPDTPMKQNQFGIW-----EPKLNVQNVLPLNELDILFTPLVAFDKKGNR 137
Query: 204 MGRGKGYYDTYLSELKRISPHCKTIGLAFSCQMVEDLPMSDHDVPL 249
+G G G+YD L + S +GLA+ CQ VE+LP DVPL
Sbjct: 138 LGMGGGFYDRTLQNWQNKS--FIPVGLAYQCQQVENLPTEHWDVPL 181
>sp|P40099|FTHC_YEAST 5-formyltetrahydrofolate cyclo-ligase OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=FAU1 PE=1 SV=1
Length = 211
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 87/175 (49%), Gaps = 25/175 (14%)
Query: 88 SKRISIYVDRDD-EISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSGEATLRSRV 146
S+R++ Y+ D E++T +II+++ G+E F+PR T + + F+
Sbjct: 43 SRRVACYMSMDKGEVTTGEIIKNLFQDGQEVFLPRCTHTSES-KHFK------------- 88
Query: 147 VLRE-----LVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAF-TET 200
LRE L+ HR L ++++ + + EP ++ LD+V+VPG AF +T
Sbjct: 89 -LREDHHPHLIFHRMSSL-KMVRDLKPQGPYQLKEPEPHIEESDILDVVLVPGVAFDIKT 146
Query: 201 GKRMGRGKGYYDTYLSELKRISPHCK--TIGLAFSCQMVEDLPMSDHDVPLDYVI 253
G RMG G GYYD + K + K +GL Q+ +P+ HD +D ++
Sbjct: 147 GARMGHGAGYYDDFFQRYKILHEGQKPLLVGLCLMEQVASPIPLEKHDYSMDCIV 201
>sp|P54491|YQGN_BACSU Uncharacterized protein YqgN OS=Bacillus subtilis (strain 168)
GN=yqgN PE=1 SV=1
Length = 187
Score = 67.4 bits (163), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 80/173 (46%), Gaps = 33/173 (19%)
Query: 83 PVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRY--DKTEMTMRIFRQTWSGEA 140
P ++ + I++ + R EI TR +I+ GK+ IP+ D +M R ++ E
Sbjct: 36 PEWQNAGTIAVTISRGLEIPTRPVIEQAWEEGKQVCIPKCHPDTKKMQFRTYQTDDQLET 95
Query: 141 TLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTET 200
L E V+ + ++++ P++ +DL++VPG F
Sbjct: 96 VYAG---LLEPVIEKTKEVN----------------PSQ-------IDLMIVPGVCFDVN 129
Query: 201 GKRMGRGKGYYDTYLSELKRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVI 253
G R+G G GYYD YLSE + KT+ L CQ+ +P HD+P+ +I
Sbjct: 130 GFRVGFGGGYYDRYLSEYEG-----KTVSLLLECQLFAHVPRLPHDIPVHKLI 177
>sp|Q89AD6|Y370_BUCBP Uncharacterized protein bbp_370 OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=bbp_370 PE=3 SV=1
Length = 195
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 75/158 (47%), Gaps = 14/158 (8%)
Query: 101 ISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSGEATLRSRVVLRELVLHRYEDLD 160
+ + K I CS E D + ++++RQ ++ + + + L +Y
Sbjct: 42 LDSVKNIAIFCSFDGEI-----DTYPLILKLWRQNYNVYLPIINYNYKKILGFMKYLPNT 96
Query: 161 NLIKNKENILQHSQTEPTED---AMKTGGLDLVVVPGRAFTETGKRMGRGKGYYDTYLSE 217
+LIKN+ NIL EP D +++ LD++ VP AF E G R+G G G+YD L
Sbjct: 97 SLIKNRFNIL-----EPVFDRKNFIQSDDLDIMFVPLVAFDEFGYRLGMGGGFYDRILIN 151
Query: 218 LKRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVIHP 255
I IGLAF CQ +++ + DV L +I P
Sbjct: 152 YD-IKKSFFPIGLAFDCQFSKNINIKYWDVALPVIITP 188
>sp|Q8K9E3|Y396_BUCAP Uncharacterized protein BUsg_396 OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=BUsg_396 PE=3 SV=1
Length = 199
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 76/171 (44%), Gaps = 29/171 (16%)
Query: 87 QSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSGEATLRSRV 146
+K I+ ++ D EI+T +I + + K F+P I ++S
Sbjct: 47 NAKNIACFLSFDGEINTYPLILKLWLNNKNVFLP----------IVSSSYS--------- 87
Query: 147 VLRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRMGR 206
R+L + L N+ NILQ +D + LDL++VP AF G R+G
Sbjct: 88 --RKLFFVPFTCKSILYYNQYNILQPFYN--MKDIILESDLDLIIVPLVAFDCRGVRLGM 143
Query: 207 GKGYYDTYLS--ELKRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVIHP 255
G G+YD +L E K+ P IG+A+ Q V +P D+ L V+ P
Sbjct: 144 GGGFYDQFLKNWERKKFIP----IGMAYDFQFVNYIPRQPWDISLPIVLTP 190
>sp|Q9P7W2|FTHC_SCHPO Probable 5-formyltetrahydrofolate cyclo-ligase
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC1703.08c PE=3 SV=1
Length = 204
Score = 54.3 bits (129), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 84/186 (45%), Gaps = 40/186 (21%)
Query: 83 PVYEQSKRISIYVDR-DDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSGEAT 141
P +++ K + +Y++ E+ TR +I GK FIP+ + + M +++
Sbjct: 39 PEWKRCKNVCLYMNMPKKEVRTRCLIDVAFKEGKNVFIPKCIGSHV-MEMYQV------- 90
Query: 142 LRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKT----GGLDLVVVPGRAF 197
+E ++L NK I EP ++ K +L++VPG AF
Sbjct: 91 --------------FEKTESLTINKWGI-----AEPNGESRKIMDDETDCELIIVPGVAF 131
Query: 198 TETGKRMGRGKGYYDTYLSELKRISPHCKT------IGLAFSCQMV--EDLPMSDHDVPL 249
E R+G GKGYYD Y+S+ + + ++ +G+ Q++ ++PM D L
Sbjct: 132 DEKLSRLGHGKGYYDNYISKYQSWALQKESRANMFKVGICLKEQILPNREIPMDTRDQKL 191
Query: 250 DYVIHP 255
D ++ P
Sbjct: 192 DALVTP 197
>sp|P75430|MTHFS_MYCPN Probable 5-formyltetrahydrofolate cyclo-ligase OS=Mycoplasma
pneumoniae (strain ATCC 29342 / M129) GN=MPN_348 PE=1
SV=1
Length = 164
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 180 DAMKTGGLDLVVVPGRAFTETGKRMGRGKGYYDTYLSELKRISPHCKTIGLAFSCQMVED 239
+ + +D ++P F + R+G GKGYYD YL +L R P IG+A+S Q D
Sbjct: 92 NTFEPNQIDCFLIPLVGFNKDNYRLGFGKGYYDRYLMQLTRQQPK---IGIAYSFQK-GD 147
Query: 240 LPMSDHDVPLDYVIH 254
DV LD +I+
Sbjct: 148 FLADPWDVQLDLIIN 162
>sp|Q2KI24|MTHSD_BOVIN Methenyltetrahydrofolate synthase domain-containing protein OS=Bos
taurus GN=MTHFSD PE=2 SV=1
Length = 380
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 7/75 (9%)
Query: 187 LDLVVVPGRAFTETGKRMGRGKGYYD---TYLSELKRISPHCKTIGLAFSCQMVEDLP-- 241
+DLVVV A +E G R+G+G+GY D + + +S + + CQ+V D+P
Sbjct: 133 VDLVVVGSVAVSEKGWRIGKGEGYADLEYAMMVSMGAVSQGTPVVTIVHDCQVV-DIPEA 191
Query: 242 -MSDHDVPLDYVIHP 255
+ DHD+ +DY++ P
Sbjct: 192 LLEDHDLTVDYILTP 206
>sp|Q2M296|MTHSD_HUMAN Methenyltetrahydrofolate synthase domain-containing protein OS=Homo
sapiens GN=MTHFSD PE=1 SV=2
Length = 383
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 7/75 (9%)
Query: 187 LDLVVVPGRAFTETGKRMGRGKGYYD---TYLSELKRISPHCKTIGLAFSCQMVEDLP-- 241
+DLVVV A +E G R+G+G+GY D + + +S + + CQ+V D+P
Sbjct: 134 VDLVVVGSVAVSEKGWRIGKGEGYADLEYAMMVSMGAVSKETPVVTIVHDCQVV-DIPEE 192
Query: 242 -MSDHDVPLDYVIHP 255
+ +HD+ +DY++ P
Sbjct: 193 LVEEHDITVDYILTP 207
>sp|P47487|MTHFS_MYCGE Probable 5-formyltetrahydrofolate cyclo-ligase OS=Mycoplasma
genitalium (strain ATCC 33530 / G-37 / NCTC 10195)
GN=MG245 PE=3 SV=1
Length = 165
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 176 EPTEDAMKTGGLDLVVVPGRAFTETGKRMGRGKGYYDTYLSELKRISPHCKTIGLAFSCQ 235
+ + + +D +P AF + R+G GKGYYD YLS S IG+A+ Q
Sbjct: 89 DQNNNEINPNDIDCFFIPLLAFNKANHRIGFGKGYYDRYLS---LTSKKQLKIGIAYDFQ 145
Query: 236 MVE 238
E
Sbjct: 146 YAE 148
>sp|Q0P464|MTHSD_DANRE Methenyltetrahydrofolate synthase domain-containing protein
OS=Danio rerio GN=mthfsd PE=2 SV=1
Length = 382
Score = 38.9 bits (89), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Query: 187 LDLVVVPGRAFTETGKRMGRGKGYYD---TYLSELKRISPHCKTIGLAFSCQMVEDLP-- 241
+DLVVV A +E G R+G+G+G+ D ++ + ++ I + CQ V D+P
Sbjct: 137 VDLVVVGSVAVSEKGYRIGKGEGFADMEYAMMACMGSVTESTWVITVVHDCQ-VMDIPEE 195
Query: 242 -MSDHDVPLDYVI 253
+ HD+ +D++I
Sbjct: 196 LIERHDLMVDFII 208
>sp|Q3URQ7|MTHSD_MOUSE Methenyltetrahydrofolate synthase domain-containing protein OS=Mus
musculus GN=Mthfsd PE=2 SV=1
Length = 372
Score = 38.1 bits (87), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 196 AFTETGKRMGRGKGYYD---TYLSELKRISPHCKTIGLAFSCQMVEDLP---MSDHDVPL 249
A +E G R+G+G+GY D + + + + + CQ+V D+P + DHD+ +
Sbjct: 142 AVSEKGWRIGKGEGYADLEYAMMVSMGAVHKGTPVVTIVHDCQVV-DIPEALVEDHDLTV 200
Query: 250 DYVIHP 255
DY++ P
Sbjct: 201 DYILTP 206
>sp|Q6FF90|RPOB_ACIAD DNA-directed RNA polymerase subunit beta OS=Acinetobacter sp. (strain
ADP1) GN=rpoB PE=3 SV=1
Length = 1362
Score = 34.3 bits (77), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 213 TYLSELKRISPHCKTIG------LAFSCQMVEDLPMSDHDVPLDYVIHPLSTP 259
YL+ +RI P K G + + VED+P + VP+D V++PL P
Sbjct: 1073 VYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDVVLNPLGVP 1125
>sp|B0VDI0|RPOB_ACIBY DNA-directed RNA polymerase subunit beta OS=Acinetobacter baumannii
(strain AYE) GN=rpoB PE=3 SV=1
Length = 1362
Score = 34.3 bits (77), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 213 TYLSELKRISPHCKTIG------LAFSCQMVEDLPMSDHDVPLDYVIHPLSTP 259
YL+ +RI P K G + + VED+P + VP+D V++PL P
Sbjct: 1073 VYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDIVLNPLGVP 1125
>sp|B2I1Z1|RPOB_ACIBC DNA-directed RNA polymerase subunit beta OS=Acinetobacter baumannii
(strain ACICU) GN=rpoB PE=3 SV=1
Length = 1362
Score = 34.3 bits (77), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 213 TYLSELKRISPHCKTIG------LAFSCQMVEDLPMSDHDVPLDYVIHPLSTP 259
YL+ +RI P K G + + VED+P + VP+D V++PL P
Sbjct: 1073 VYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDIVLNPLGVP 1125
>sp|B7I360|RPOB_ACIB5 DNA-directed RNA polymerase subunit beta OS=Acinetobacter baumannii
(strain AB0057) GN=rpoB PE=3 SV=1
Length = 1362
Score = 34.3 bits (77), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 213 TYLSELKRISPHCKTIG------LAFSCQMVEDLPMSDHDVPLDYVIHPLSTP 259
YL+ +RI P K G + + VED+P + VP+D V++PL P
Sbjct: 1073 VYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDIVLNPLGVP 1125
>sp|B7H1J8|RPOB_ACIB3 DNA-directed RNA polymerase subunit beta OS=Acinetobacter baumannii
(strain AB307-0294) GN=rpoB PE=3 SV=1
Length = 1362
Score = 34.3 bits (77), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 213 TYLSELKRISPHCKTIG------LAFSCQMVEDLPMSDHDVPLDYVIHPLSTP 259
YL+ +RI P K G + + VED+P + VP+D V++PL P
Sbjct: 1073 VYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDIVLNPLGVP 1125
>sp|B0VLZ6|RPOB_ACIBS DNA-directed RNA polymerase subunit beta OS=Acinetobacter baumannii
(strain SDF) GN=rpoB PE=3 SV=1
Length = 1362
Score = 34.3 bits (77), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 213 TYLSELKRISPHCKTIG------LAFSCQMVEDLPMSDHDVPLDYVIHPLSTP 259
YL+ +RI P K G + + VED+P + VP+D V++PL P
Sbjct: 1073 VYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDIVLNPLGVP 1125
>sp|A3M1G3|RPOB_ACIBT DNA-directed RNA polymerase subunit beta OS=Acinetobacter baumannii
(strain ATCC 17978 / NCDC KC 755) GN=rpoB PE=3 SV=2
Length = 1357
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 213 TYLSELKRISPHCKTIG------LAFSCQMVEDLPMSDHDVPLDYVIHPLSTP 259
YL+ +RI P K G + + VED+P + VP+D V++PL P
Sbjct: 1073 VYLAVKRRIQPGDKMAGRHGNKGVVSNILPVEDMPHDANGVPVDIVLNPLGVP 1125
>sp|Q492B9|RPOB_BLOPB DNA-directed RNA polymerase subunit beta OS=Blochmannia
pennsylvanicus (strain BPEN) GN=rpoB PE=3 SV=1
Length = 1341
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 213 TYLSELKRISPHCKTIG------LAFSCQMVEDLPMSDHDVPLDYVIHPLSTP 259
YL+ ++I P K G + +ED+P H +P+D V++PL P
Sbjct: 1052 VYLAVKRQIQPGDKMAGRHGNKGVISKINPIEDMPYDQHGIPVDIVLNPLGVP 1104
>sp|C5BQ39|RPOB_TERTT DNA-directed RNA polymerase subunit beta OS=Teredinibacter turnerae
(strain ATCC 39867 / T7901) GN=rpoB PE=3 SV=1
Length = 1360
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 66/165 (40%), Gaps = 38/165 (23%)
Query: 106 IIQHICSSGKECFIPRYDKTEMTMRIFRQTW----SGEATLRSRVVLREL-VLHRYEDLD 160
++ ++ SSGK EM I R W + L ++ L E ++ R ++LD
Sbjct: 984 LVGNLASSGKGVKKGEAVTDEMLNAIDRDDWFKVRMADDALNEQLDLAEQQLVERRKELD 1043
Query: 161 NLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRMGRGKGYYDTYLSELKR 220
++K+ L T D + G L +V V YL+ +R
Sbjct: 1044 ERFEDKKRKL------ATGDDLAPGVLKIVKV---------------------YLAIKRR 1076
Query: 221 ISPHCKTIGL-----AFSCQM-VEDLPMSDHDVPLDYVIHPLSTP 259
I P K G S M VED+P ++ P+D V++PL P
Sbjct: 1077 IQPGDKMAGRHGNKGVISVIMPVEDMPYDENGEPIDIVLNPLGVP 1121
>sp|Q7VRP7|RPOB_BLOFL DNA-directed RNA polymerase subunit beta OS=Blochmannia floridanus
GN=rpoB PE=3 SV=1
Length = 1342
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 213 TYLSELKRISPHCKTIG------LAFSCQMVEDLPMSDHDVPLDYVIHPLSTP 259
YL+ ++I P K G + VED+P ++ VP+D V++PL P
Sbjct: 1053 VYLAVKRQIQPGDKMAGRHGNKGVISKINPVEDMPYDEYGVPVDIVLNPLGVP 1105
>sp|C4LBV2|RPOB_TOLAT DNA-directed RNA polymerase subunit beta OS=Tolumonas auensis (strain
DSM 9187 / TA4) GN=rpoB PE=3 SV=1
Length = 1342
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Query: 213 TYLSELKRISPHCKTIG-------LAFSCQMVEDLPMSDHDVPLDYVIHPLSTP 259
YL+ +RI P K G ++ C VED+P D P+D V++PL P
Sbjct: 1052 VYLAVKRRIQPGDKMAGRHGNKGVISKICP-VEDMPYDDEGNPVDIVLNPLGVP 1104
>sp|P57146|RPOB_BUCAI DNA-directed RNA polymerase subunit beta OS=Buchnera aphidicola
subsp. Acyrthosiphon pisum (strain APS) GN=rpoB PE=3 SV=1
Length = 1342
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 213 TYLSELKRISPHCKTIG------LAFSCQMVEDLPMSDHDVPLDYVIHPLSTP 259
YL+ ++I P K G + VED+P ++ +P+D V++PL P
Sbjct: 1052 VYLAVKRQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGIPVDIVLNPLGVP 1104
>sp|B8D8J6|RPOB_BUCA5 DNA-directed RNA polymerase subunit beta OS=Buchnera aphidicola
subsp. Acyrthosiphon pisum (strain 5A) GN=rpoB PE=3 SV=1
Length = 1342
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 213 TYLSELKRISPHCKTIG------LAFSCQMVEDLPMSDHDVPLDYVIHPLSTP 259
YL+ ++I P K G + VED+P ++ +P+D V++PL P
Sbjct: 1052 VYLAVKRQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGIPVDIVLNPLGVP 1104
>sp|Q2NWR6|RPOB_SODGM DNA-directed RNA polymerase subunit beta OS=Sodalis glossinidius
(strain morsitans) GN=rpoB PE=3 SV=1
Length = 1342
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 213 TYLSELKRISPHCKTIG------LAFSCQMVEDLPMSDHDVPLDYVIHPLSTP 259
YL+ ++I P K G + +ED+P ++ VP+D V++PL P
Sbjct: 1052 VYLAVKRQIQPGDKMAGRHGNKGVISKINPIEDMPYDENGVPVDIVLNPLGVP 1104
>sp|B8D6V0|RPOB_BUCAT DNA-directed RNA polymerase subunit beta OS=Buchnera aphidicola
subsp. Acyrthosiphon pisum (strain Tuc7) GN=rpoB PE=3
SV=1
Length = 1342
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 213 TYLSELKRISPHCKTIG------LAFSCQMVEDLPMSDHDVPLDYVIHPLSTP 259
YL+ ++I P K G + VED+P ++ +P+D V++PL P
Sbjct: 1052 VYLAVKRQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGIPVDIVLNPLGVP 1104
>sp|Q3YUZ7|RPOB_SHISS DNA-directed RNA polymerase subunit beta OS=Shigella sonnei (strain
Ss046) GN=rpoB PE=3 SV=1
Length = 1342
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 213 TYLSELKRISPHCKTIG------LAFSCQMVEDLPMSDHDVPLDYVIHPLSTP 259
YL+ +RI P K G + +ED+P ++ P+D V++PL P
Sbjct: 1052 VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104
>sp|P0A8V5|RPOB_SHIFL DNA-directed RNA polymerase subunit beta OS=Shigella flexneri GN=rpoB
PE=3 SV=1
Length = 1342
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 213 TYLSELKRISPHCKTIG------LAFSCQMVEDLPMSDHDVPLDYVIHPLSTP 259
YL+ +RI P K G + +ED+P ++ P+D V++PL P
Sbjct: 1052 VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104
>sp|Q31U10|RPOB_SHIBS DNA-directed RNA polymerase subunit beta OS=Shigella boydii serotype
4 (strain Sb227) GN=rpoB PE=3 SV=1
Length = 1342
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 213 TYLSELKRISPHCKTIG------LAFSCQMVEDLPMSDHDVPLDYVIHPLSTP 259
YL+ +RI P K G + +ED+P ++ P+D V++PL P
Sbjct: 1052 VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104
>sp|B2TWH3|RPOB_SHIB3 DNA-directed RNA polymerase subunit beta OS=Shigella boydii serotype
18 (strain CDC 3083-94 / BS512) GN=rpoB PE=3 SV=1
Length = 1342
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 213 TYLSELKRISPHCKTIG------LAFSCQMVEDLPMSDHDVPLDYVIHPLSTP 259
YL+ +RI P K G + +ED+P ++ P+D V++PL P
Sbjct: 1052 VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104
>sp|B7LUL5|RPOB_ESCF3 DNA-directed RNA polymerase subunit beta OS=Escherichia fergusonii
(strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=rpoB
PE=3 SV=1
Length = 1342
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 213 TYLSELKRISPHCKTIG------LAFSCQMVEDLPMSDHDVPLDYVIHPLSTP 259
YL+ +RI P K G + +ED+P ++ P+D V++PL P
Sbjct: 1052 VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104
>sp|Q1R5V3|RPOB_ECOUT DNA-directed RNA polymerase subunit beta OS=Escherichia coli (strain
UTI89 / UPEC) GN=rpoB PE=3 SV=2
Length = 1342
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 213 TYLSELKRISPHCKTIG------LAFSCQMVEDLPMSDHDVPLDYVIHPLSTP 259
YL+ +RI P K G + +ED+P ++ P+D V++PL P
Sbjct: 1052 VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104
>sp|B1LNT9|RPOB_ECOSM DNA-directed RNA polymerase subunit beta OS=Escherichia coli (strain
SMS-3-5 / SECEC) GN=rpoB PE=3 SV=1
Length = 1342
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 213 TYLSELKRISPHCKTIG------LAFSCQMVEDLPMSDHDVPLDYVIHPLSTP 259
YL+ +RI P K G + +ED+P ++ P+D V++PL P
Sbjct: 1052 VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104
>sp|B6I5J7|RPOB_ECOSE DNA-directed RNA polymerase subunit beta OS=Escherichia coli (strain
SE11) GN=rpoB PE=3 SV=1
Length = 1342
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 213 TYLSELKRISPHCKTIG------LAFSCQMVEDLPMSDHDVPLDYVIHPLSTP 259
YL+ +RI P K G + +ED+P ++ P+D V++PL P
Sbjct: 1052 VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104
>sp|B7NFS7|RPOB_ECOLU DNA-directed RNA polymerase subunit beta OS=Escherichia coli
O17:K52:H18 (strain UMN026 / ExPEC) GN=rpoB PE=3 SV=1
Length = 1342
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 213 TYLSELKRISPHCKTIG------LAFSCQMVEDLPMSDHDVPLDYVIHPLSTP 259
YL+ +RI P K G + +ED+P ++ P+D V++PL P
Sbjct: 1052 VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104
>sp|P0A8V2|RPOB_ECOLI DNA-directed RNA polymerase subunit beta OS=Escherichia coli (strain
K12) GN=rpoB PE=1 SV=1
Length = 1342
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 213 TYLSELKRISPHCKTIG------LAFSCQMVEDLPMSDHDVPLDYVIHPLSTP 259
YL+ +RI P K G + +ED+P ++ P+D V++PL P
Sbjct: 1052 VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104
>sp|B1IUR0|RPOB_ECOLC DNA-directed RNA polymerase subunit beta OS=Escherichia coli (strain
ATCC 8739 / DSM 1576 / Crooks) GN=rpoB PE=3 SV=1
Length = 1342
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 213 TYLSELKRISPHCKTIG------LAFSCQMVEDLPMSDHDVPLDYVIHPLSTP 259
YL+ +RI P K G + +ED+P ++ P+D V++PL P
Sbjct: 1052 VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104
>sp|P0A8V3|RPOB_ECOL6 DNA-directed RNA polymerase subunit beta OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=rpoB PE=3 SV=1
Length = 1342
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 213 TYLSELKRISPHCKTIG------LAFSCQMVEDLPMSDHDVPLDYVIHPLSTP 259
YL+ +RI P K G + +ED+P ++ P+D V++PL P
Sbjct: 1052 VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104
>sp|A1AIF9|RPOB_ECOK1 DNA-directed RNA polymerase subunit beta OS=Escherichia coli O1:K1 /
APEC GN=rpoB PE=3 SV=2
Length = 1342
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 213 TYLSELKRISPHCKTIG------LAFSCQMVEDLPMSDHDVPLDYVIHPLSTP 259
YL+ +RI P K G + +ED+P ++ P+D V++PL P
Sbjct: 1052 VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104
>sp|A8A786|RPOB_ECOHS DNA-directed RNA polymerase subunit beta OS=Escherichia coli O9:H4
(strain HS) GN=rpoB PE=3 SV=1
Length = 1342
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 213 TYLSELKRISPHCKTIG------LAFSCQMVEDLPMSDHDVPLDYVIHPLSTP 259
YL+ +RI P K G + +ED+P ++ P+D V++PL P
Sbjct: 1052 VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104
>sp|B1XBY9|RPOB_ECODH DNA-directed RNA polymerase subunit beta OS=Escherichia coli (strain
K12 / DH10B) GN=rpoB PE=3 SV=1
Length = 1342
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 213 TYLSELKRISPHCKTIG------LAFSCQMVEDLPMSDHDVPLDYVIHPLSTP 259
YL+ +RI P K G + +ED+P ++ P+D V++PL P
Sbjct: 1052 VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104
>sp|C5A0S7|RPOB_ECOBW DNA-directed RNA polymerase subunit beta OS=Escherichia coli (strain
K12 / MC4100 / BW2952) GN=rpoB PE=3 SV=1
Length = 1342
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 213 TYLSELKRISPHCKTIG------LAFSCQMVEDLPMSDHDVPLDYVIHPLSTP 259
YL+ +RI P K G + +ED+P ++ P+D V++PL P
Sbjct: 1052 VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104
>sp|B7M734|RPOB_ECO8A DNA-directed RNA polymerase subunit beta OS=Escherichia coli O8
(strain IAI1) GN=rpoB PE=3 SV=1
Length = 1342
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 213 TYLSELKRISPHCKTIG------LAFSCQMVEDLPMSDHDVPLDYVIHPLSTP 259
YL+ +RI P K G + +ED+P ++ P+D V++PL P
Sbjct: 1052 VYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,846,490
Number of Sequences: 539616
Number of extensions: 4165590
Number of successful extensions: 11714
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 11663
Number of HSP's gapped (non-prelim): 113
length of query: 259
length of database: 191,569,459
effective HSP length: 115
effective length of query: 144
effective length of database: 129,513,619
effective search space: 18649961136
effective search space used: 18649961136
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)