Query psy17389
Match_columns 259
No_of_seqs 305 out of 1755
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 21:11:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17389.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17389hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10333 5-formyltetrahydrofol 100.0 7.1E-48 1.5E-52 325.4 15.4 160 71-258 17-179 (182)
2 PF01812 5-FTHF_cyc-lig: 5-for 100.0 7.7E-46 1.7E-50 313.6 10.7 162 71-255 23-186 (186)
3 PLN02812 5-formyltetrahydrofol 100.0 9.6E-45 2.1E-49 312.9 15.2 165 71-258 29-210 (211)
4 TIGR02727 MTHFS_bact 5,10-meth 100.0 2.7E-44 5.9E-49 303.3 15.5 157 71-255 23-181 (181)
5 KOG3093|consensus 100.0 1.7E-43 3.8E-48 290.3 8.1 166 70-256 29-200 (200)
6 COG0212 5-formyltetrahydrofola 100.0 1E-41 2.2E-46 289.8 15.1 160 72-258 28-187 (191)
7 PRK10333 5-formyltetrahydrofol 99.7 1.5E-16 3.1E-21 134.5 6.6 93 3-99 65-157 (182)
8 KOG4410|consensus 99.7 2E-16 4.3E-21 138.4 7.5 169 59-258 53-235 (396)
9 PF01812 5-FTHF_cyc-lig: 5-for 99.6 1.1E-15 2.5E-20 129.1 3.1 92 3-98 71-166 (186)
10 TIGR02727 MTHFS_bact 5,10-meth 99.5 1.1E-14 2.3E-19 122.8 6.7 92 3-99 71-162 (181)
11 PLN02812 5-formyltetrahydrofol 99.5 2.2E-14 4.7E-19 123.9 6.3 92 3-99 80-186 (211)
12 KOG3093|consensus 99.4 2.5E-14 5.4E-19 118.4 1.8 92 3-96 79-177 (200)
13 COG0212 5-formyltetrahydrofola 99.4 6.8E-13 1.5E-17 112.9 5.9 91 3-99 75-165 (191)
14 PRK13146 hisH imidazole glycer 45.4 6.4 0.00014 33.7 -0.2 54 185-240 40-93 (209)
15 TIGR02910 sulfite_red_A sulfit 39.0 2.3E+02 0.0049 26.3 8.9 40 188-231 90-133 (334)
16 PRK13152 hisH imidazole glycer 33.7 14 0.00031 31.2 0.1 52 186-239 37-88 (201)
17 COG1332 CRISPR system related 28.7 16 0.00035 34.1 -0.4 17 202-218 303-319 (369)
18 KOG4410|consensus 27.2 33 0.00072 31.2 1.3 28 49-78 157-184 (396)
19 PRK13181 hisH imidazole glycer 26.6 23 0.0005 29.8 0.2 51 186-239 37-87 (199)
20 PLN02832 glutamine amidotransf 23.5 29 0.00064 30.8 0.3 49 186-238 38-86 (248)
21 cd01740 GATase1_FGAR_AT Type 1 23.2 69 0.0015 27.9 2.5 50 186-239 43-97 (238)
22 PF06059 DUF930: Domain of Unk 22.9 28 0.00062 26.5 0.0 50 188-247 47-96 (101)
23 cd03144 GATase1_ScBLP_like Typ 21.4 41 0.0009 26.1 0.7 42 186-232 44-85 (114)
24 PF10001 DUF2242: Uncharacteri 20.7 39 0.00085 26.5 0.4 13 207-219 106-118 (121)
25 PRK01175 phosphoribosylformylg 20.7 69 0.0015 28.5 2.0 50 185-238 47-103 (261)
26 TIGR00443 hisZ_biosyn_reg ATP 20.6 56 0.0012 29.6 1.5 25 207-234 281-305 (314)
27 PRK13170 hisH imidazole glycer 20.5 31 0.00067 29.1 -0.2 47 186-239 38-85 (196)
No 1
>PRK10333 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional
Probab=100.00 E-value=7.1e-48 Score=325.37 Aligned_cols=160 Identities=25% Similarity=0.511 Sum_probs=138.3
Q ss_pred cccHHHHhhcccccccccceEEeeccCCCCCChHHHHHHHHhCCCEEEEceeecC---Cceeeeecccccccchhhccee
Q psy17389 71 FSWPYIGCFLKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKT---EMTMRIFRQTWSGEATLRSRVV 147 (259)
Q Consensus 71 ~s~~i~drll~~~~~~~a~~I~ly~s~~~Ev~t~~li~~~~~~gk~v~lP~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 147 (259)
+|..++++++++..++++++|++|+|+++||||.+|++.+++.||+|+||++... .|.|
T Consensus 17 ~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~Evdt~~li~~~~~~gk~v~lP~v~~~~~~~m~f------------------ 78 (182)
T PRK10333 17 MGQQAATRMMTYPPVVMAHTVAVFLSFDGELDTQPLIEQLWRAGKRVYLPVLHPFSAGNLLF------------------ 78 (182)
T ss_pred HHHHHHHHHHhChhhhcCCEEEEEcCCCCCcCHHHHHHHHHHCCCEEEEeEEecCCCCEEEE------------------
Confidence 4899999999988889999999999999999999999999999999999999753 2555
Q ss_pred eeeEEEeccCCccccccCcCccCCCCCCCCCcccccCCCCCEEEEcCceeeCCCCccccCCchhhhhhhhccccCCCccE
Q psy17389 148 LRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRMGRGKGYYDTYLSELKRISPHCKT 227 (259)
Q Consensus 148 ~~~~~~~~~~~~~~l~~~~~gi~eP~~~~~~~~~~~~~~idlvivP~lafd~~G~RLG~G~GyYDr~l~~~~~~~~~~~~ 227 (259)
+. +.+.+.|.+|+|||+||..+... ....+.+|+|||||||||++|+|||||||||||||++++.. ++.+
T Consensus 79 ---~~---~~~~~~l~~~~~gI~EP~~~~~~--~~~~~~iDlviVP~laFD~~G~RLG~GgGyYDR~L~~~~~~--~~~~ 148 (182)
T PRK10333 79 ---LN---YHPQSELVMNRLKIHEPKLDVRD--VLPLSRLDVLITPLVAFDEYGQRLGMGGGFYDRTLQNWQHY--KTQP 148 (182)
T ss_pred ---EE---CCCCCccccCCCCCCCCCccccc--cCCcccCCEEEeCceEECCCCCcccCCcchHHHHHHHhccc--CCcE
Confidence 33 33345689999999999754321 23456899999999999999999999999999999987542 2468
Q ss_pred EEEecCcccccCCCCCCCCccCCEEEcCCCC
Q psy17389 228 IGLAFSCQMVEDLPMSDHDVPLDYVIHPLST 258 (259)
Q Consensus 228 igl~~~~Q~~~~ip~e~~D~~ld~iiTe~~~ 258 (259)
||+||++|+++++|+|+||++||+||||+|+
T Consensus 149 igla~~~Q~~~~ip~e~hD~~ld~iiTe~~~ 179 (182)
T PRK10333 149 VGYAHDCQLVEKLPVEEWDIPLPAVVTPSKV 179 (182)
T ss_pred EEEeeeeEEeCCcCCCcccCcCCEEEeCCeE
Confidence 9999999999999999999999999999985
No 2
>PF01812 5-FTHF_cyc-lig: 5-formyltetrahydrofolate cyclo-ligase family; InterPro: IPR002698 5-formyltetrahydrofolate cyclo-ligase or methenyl-THF synthetase 6.3.3.2 from EC catalyses the interchange of 5-formyltetrahydrofolate (5-FTHF) to 5-10-methenyltetrahydrofolate, this requires ATP and Mg2+ []. 5-FTHF is used in chemotherapy where it is clinically known as Leucovorin [].; GO: 0005524 ATP binding, 0030272 5-formyltetrahydrofolate cyclo-ligase activity, 0009396 folic acid-containing compound biosynthetic process; PDB: 1WKC_A 1SBQ_A 1U3G_A 1U3F_B 1YDM_B 1SOU_A 2JCB_B 3HY6_A 3HY4_A 3HXT_A ....
Probab=100.00 E-value=7.7e-46 Score=313.61 Aligned_cols=162 Identities=35% Similarity=0.620 Sum_probs=120.6
Q ss_pred cccHHHHhhcccccccccceEEeeccCCCCCChHHHHHHHHhCCCEEEEceeecCC--ceeeeecccccccchhhcceee
Q psy17389 71 FSWPYIGCFLKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTE--MTMRIFRQTWSGEATLRSRVVL 148 (259)
Q Consensus 71 ~s~~i~drll~~~~~~~a~~I~ly~s~~~Ev~t~~li~~~~~~gk~v~lP~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 148 (259)
+|..+++++.++..+.++++|++|+|+.+|+||.+|++.++++||+|++|++..+. |.+
T Consensus 23 ~s~~i~~~l~~~~~~~~a~~I~~y~~~~~Ev~t~~li~~~~~~gk~v~lP~~~~~~~~~~~------------------- 83 (186)
T PF01812_consen 23 ASQAICERLLALPEYRKAQTIALYLPMGGEVDTRPLIERALKDGKRVYLPRVHPDDGRMRM------------------- 83 (186)
T ss_dssp HHHHHHHHHHCCHHHHCTSEEEE----TTS---HHHHHHHHHTTCEEEEEEEETTCTEECE-------------------
T ss_pred HHHHHHHHHHhChhhhhhceEEEccCCCCCCCHHHHHHHHHHcCCeEecceecccccccce-------------------
Confidence 38899999999988889999999999999999999999999999999999998776 333
Q ss_pred eeEEEeccCCccccccCcCccCCCCCCCCCcccccCCCCCEEEEcCceeeCCCCccccCCchhhhhhhhccccCCCccEE
Q psy17389 149 RELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRMGRGKGYYDTYLSELKRISPHCKTI 228 (259)
Q Consensus 149 ~~~~~~~~~~~~~l~~~~~gi~eP~~~~~~~~~~~~~~idlvivP~lafd~~G~RLG~G~GyYDr~l~~~~~~~~~~~~i 228 (259)
+.+..+...+.+++|+|||+||..+.... .....+|+|||||||||++|+|||||||||||||+.+.....++.+|
T Consensus 84 --~~~~~~~~~~~l~~~~~gI~EP~~~~~~~--~~~~~idlvlVP~lafd~~G~RLG~GgGyYDR~L~~~~~~~~~~~~i 159 (186)
T PF01812_consen 84 --MEFRRYDSDDPLEKGRFGIPEPDGESPPP--DPPEEIDLVLVPGLAFDRNGNRLGYGGGYYDRFLARLPPGRKKPLKI 159 (186)
T ss_dssp --EEEEEESSCGCCEECETTCEEEESTCSEE--GGGGG-SEEEEE-SEEETTSBEE-SSSTHHHHHHHHHTS-SS--EEE
T ss_pred --eEEeecCCcccccccccCccCCccccccc--cccccCCEEEeCcEEECCCCCeEecCCCHHHhHHHhhhcccCCCeEE
Confidence 33334455677899999999998765321 11237999999999999999999999999999999987522346899
Q ss_pred EEecCcccccCCCCCCCCccCCEEEcC
Q psy17389 229 GLAFSCQMVEDLPMSDHDVPLDYVIHP 255 (259)
Q Consensus 229 gl~~~~Q~~~~ip~e~~D~~ld~iiTe 255 (259)
||||++|+++++|+|+||++||+||||
T Consensus 160 gl~~~~q~~~~iP~e~hD~~ld~iiTe 186 (186)
T PF01812_consen 160 GLAFDFQIVDDIPVEPHDIPLDAIITE 186 (186)
T ss_dssp EEE-GGGEES-----TTS-B-SEEEET
T ss_pred EEeehhheeCCCCCCcccccCCEEEcC
Confidence 999999999999999999999999998
No 3
>PLN02812 5-formyltetrahydrofolate cyclo-ligase
Probab=100.00 E-value=9.6e-45 Score=312.94 Aligned_cols=165 Identities=32% Similarity=0.585 Sum_probs=137.7
Q ss_pred cccHHHHhhcccccccccceEEeeccCCC--CCChHHHHHHHHhCC-CEEEEceeecCC--ceeeeecccccccchhhcc
Q psy17389 71 FSWPYIGCFLKHPVYEQSKRISIYVDRDD--EISTRKIIQHICSSG-KECFIPRYDKTE--MTMRIFRQTWSGEATLRSR 145 (259)
Q Consensus 71 ~s~~i~drll~~~~~~~a~~I~ly~s~~~--Ev~t~~li~~~~~~g-k~v~lP~~~~~~--~~~~~~~~~~~~~~~~~~~ 145 (259)
.|..++++++++..++++++|++|+|+.+ ||||.+|++++++.| |+|+||++...+ |.|
T Consensus 29 ~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~~g~k~v~lP~~~~~~~~m~f---------------- 92 (211)
T PLN02812 29 EDAAIQSRLLELPWFKSSKRLCAYVSCAKLREVDTSKILSEILQNPDKRLYVPRVEDKNSNMRM---------------- 92 (211)
T ss_pred HHHHHHHHHHcChhhHhcCEEEEEEECCCCCCcCHHHHHHHHHHcCCcEEEEeEEecCCCeEEE----------------
Confidence 48999999999888889999999999998 999999999999999 999999997543 666
Q ss_pred eeeeeEEEeccCCccccccCcCccCCCCCCCCCc----cc-ccCCCCCEEEEcCceeeCCCCccccCCchhhhhhhhccc
Q psy17389 146 VVLRELVLHRYEDLDNLIKNKENILQHSQTEPTE----DA-MKTGGLDLVVVPGRAFTETGKRMGRGKGYYDTYLSELKR 220 (259)
Q Consensus 146 ~~~~~~~~~~~~~~~~l~~~~~gi~eP~~~~~~~----~~-~~~~~idlvivP~lafd~~G~RLG~G~GyYDr~l~~~~~ 220 (259)
+.+.+.. +.|..|+|||+||....... +. ....++|||||||||||++|+|||||||||||||++++.
T Consensus 93 -----~~~~~~~--~~l~~~~~gI~EP~~~~~~~~~~~~~~~~~~~iDliiVP~lafD~~G~RLG~GgGyYDR~L~~~~~ 165 (211)
T PLN02812 93 -----LHITDMA--DDLVANSMNILEPTPVDADGNPREDVLQAPEPLDLLLLPGLAFDRSGRRLGRGGGYYDTFLSKYQE 165 (211)
T ss_pred -----EEeCCcc--ccccCCCCCccCCCccccccccccccccCCCCCCEEEeCceEECCCCCcCcCCCchHHHHHHHhhh
Confidence 4443321 46889999999998643210 01 135689999999999999999999999999999998741
Q ss_pred ----cC-CCccEEEEecCccccc--CCCCCCCCccCCEEEcCCCC
Q psy17389 221 ----IS-PHCKTIGLAFSCQMVE--DLPMSDHDVPLDYVIHPLST 258 (259)
Q Consensus 221 ----~~-~~~~~igl~~~~Q~~~--~ip~e~~D~~ld~iiTe~~~ 258 (259)
.+ .++.+|||||++|+++ ++|+|+||++||+||||+|+
T Consensus 166 ~~~~~~~~~~~~igla~~~Q~~~~~~iP~e~hD~~ld~iiTe~~v 210 (211)
T PLN02812 166 LAKEKGWKQPLLVALSYSPQILDEGSVPVDETDVLVDALVTPSGV 210 (211)
T ss_pred hhccccCCCceEEEEeeheeeECCCCCCCccccccCCEEEcCCcC
Confidence 11 1246899999999999 99999999999999999986
No 4
>TIGR02727 MTHFS_bact 5,10-methenyltetrahydrofolate synthetase. This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism.
Probab=100.00 E-value=2.7e-44 Score=303.26 Aligned_cols=157 Identities=33% Similarity=0.589 Sum_probs=133.3
Q ss_pred cccHHHHhhcccccccccceEEeeccCCCCCChHHHHHHHHhCCCEEEEceeecCC--ceeeeecccccccchhhcceee
Q psy17389 71 FSWPYIGCFLKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTE--MTMRIFRQTWSGEATLRSRVVL 148 (259)
Q Consensus 71 ~s~~i~drll~~~~~~~a~~I~ly~s~~~Ev~t~~li~~~~~~gk~v~lP~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 148 (259)
++..+.++++++..++++++|++|+|+++|+||.+|++.+++.||+|+||++...+ |.+
T Consensus 23 ~~~~i~~~l~~~~~~~~~~~I~~Y~~~~~E~~t~~li~~~~~~~k~v~lP~~~~~~~~~~~------------------- 83 (181)
T TIGR02727 23 ASEAIAKRLLALIEWKNAKTIALYLPLRGEVDTRPLIEQLLKEGKRVALPKVDPDGKEMLF------------------- 83 (181)
T ss_pred HHHHHHHHHHhChhhhcCCEEEEEcCCCCCcCHHHHHHHHHHCCCEEEEEEEecCCCceeE-------------------
Confidence 48889999998888889999999999999999999999999999999999997654 222
Q ss_pred eeEEEeccCCccccccCcCccCCCCCCCCCcccccCCCCCEEEEcCceeeCCCCccccCCchhhhhhhhccccCCCccEE
Q psy17389 149 RELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRMGRGKGYYDTYLSELKRISPHCKTI 228 (259)
Q Consensus 149 ~~~~~~~~~~~~~l~~~~~gi~eP~~~~~~~~~~~~~~idlvivP~lafd~~G~RLG~G~GyYDr~l~~~~~~~~~~~~i 228 (259)
+ ..+...+.|..++|||+||..+.. ..+..+++|+|||||||||++|+|||||||||||||+.+.. .+.+|
T Consensus 84 --~--~~~~~~~~l~~~~~gi~eP~~~~~--~~~~~~~idlvivP~lafD~~G~RLG~GgGyYDR~L~~~~~---~~~~i 154 (181)
T TIGR02727 84 --F--RIWSPSDLLTKGKFGILEPPGDST--EPVDPDEIDLIIVPGVAFDRRGYRLGYGGGYYDRFLANLKG---KTVVV 154 (181)
T ss_pred --E--EecCCCCccccCCCCCCCCCCccc--CcCCcccCCEEEeCceEEcCCCccccCCcchHHHHHHhccc---CCCEE
Confidence 1 112323468899999999985421 12345689999999999999999999999999999998754 24589
Q ss_pred EEecCcccccCCCCCCCCccCCEEEcC
Q psy17389 229 GLAFSCQMVEDLPMSDHDVPLDYVIHP 255 (259)
Q Consensus 229 gl~~~~Q~~~~ip~e~~D~~ld~iiTe 255 (259)
||||++|+++++|+|+||++||+||||
T Consensus 155 gv~~~~q~~~~lp~e~~Di~ld~iiTe 181 (181)
T TIGR02727 155 GLAFDFQLVDELPREPHDVPVDAIITE 181 (181)
T ss_pred EEEecceeeCccCCCccCccCCEEeCC
Confidence 999999999999999999999999997
No 5
>KOG3093|consensus
Probab=100.00 E-value=1.7e-43 Score=290.26 Aligned_cols=166 Identities=38% Similarity=0.628 Sum_probs=149.1
Q ss_pred hcccHHHHhhcccccccccceEEeeccCCC-CCChHHHHHHHHhCCCEEEEceeecC--Cceeeeecccccccchhhcce
Q psy17389 70 SFSWPYIGCFLKHPVYEQSKRISIYVDRDD-EISTRKIIQHICSSGKECFIPRYDKT--EMTMRIFRQTWSGEATLRSRV 146 (259)
Q Consensus 70 ~~s~~i~drll~~~~~~~a~~I~ly~s~~~-Ev~t~~li~~~~~~gk~v~lP~~~~~--~~~~~~~~~~~~~~~~~~~~~ 146 (259)
++|..+++++++++.|++++.|++|+|+++ ||+|..||+.+++.||.||+|++... .|.+
T Consensus 29 rQs~ai~~kV~e~~~fk~skrvs~YmSm~~~Ev~T~~Ii~~~fq~gK~vFiP~~~~~~s~m~M----------------- 91 (200)
T KOG3093|consen 29 RQSEAISKKVLELPWFKNSKRVSIYMSMDKGEVDTGEIIKEAFQDGKEVFIPRCTHTSSKMDM----------------- 91 (200)
T ss_pred HHHHHHHHHHHhhHHHHhcCceEEEEecCcccccHHHHHHHHHhcCCeEEeeeeecCCCceeE-----------------
Confidence 569999999999999999999999999998 99999999999999999999999543 4777
Q ss_pred eeeeEEEeccCCccccccCcCccCCCCCCCCCcccccCC-CCCEEEEcCceeeCCCCccccCCchhhhhhhhcccc--CC
Q psy17389 147 VLRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTG-GLDLVVVPGRAFTETGKRMGRGKGYYDTYLSELKRI--SP 223 (259)
Q Consensus 147 ~~~~~~~~~~~~~~~l~~~~~gi~eP~~~~~~~~~~~~~-~idlvivP~lafd~~G~RLG~G~GyYDr~l~~~~~~--~~ 223 (259)
+++...++++.++.++|||++|.+...+++.+.+. .+|||||||||||+.|.|||+|+||||+||++++.. +.
T Consensus 92 ----vr~~~~e~~~~l~~t~w~i~qp~~~~~re~~~~t~~~lDLiivPGvAFd~~g~RlGhGkGYYD~flkry~~~~~~~ 167 (200)
T KOG3093|consen 92 ----VRIDHMEELESLPMTSWGIRQPKPGGPREDALETGHPLDLIIVPGVAFDRKGARLGHGKGYYDDFLKRYQIHAPEQ 167 (200)
T ss_pred ----EEeCChHHHhhCcccccCCCCCCCCCchhhhccCCCcceEEEecccccchhhhhccCCcchHHHHHHHHHHhcccc
Confidence 67777777888999999999999877666666554 699999999999999999999999999999987643 23
Q ss_pred CccEEEEecCcccccCCCCCCCCccCCEEEcCC
Q psy17389 224 HCKTIGLAFSCQMVEDLPMSDHDVPLDYVIHPL 256 (259)
Q Consensus 224 ~~~~igl~~~~Q~~~~ip~e~~D~~ld~iiTe~ 256 (259)
++.+||||+.+|++.+||+++||+.+|.||||+
T Consensus 168 kp~~vgL~l~EQI~~~IPv~~~Dv~lD~vvt~~ 200 (200)
T KOG3093|consen 168 KPLLVGLCLKEQILSEIPVEEHDVKLDAVVTED 200 (200)
T ss_pred CchhhhhhhhHhhcccCCCCccceeeeEeecCC
Confidence 678999999999999999999999999999985
No 6
>COG0212 5-formyltetrahydrofolate cyclo-ligase [Coenzyme metabolism]
Probab=100.00 E-value=1e-41 Score=289.78 Aligned_cols=160 Identities=33% Similarity=0.542 Sum_probs=136.5
Q ss_pred ccHHHHhhcccccccccceEEeeccCCCCCChHHHHHHHHhCCCEEEEceeecCCceeeeecccccccchhhcceeeeeE
Q psy17389 72 SWPYIGCFLKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSGEATLRSRVVLREL 151 (259)
Q Consensus 72 s~~i~drll~~~~~~~a~~I~ly~s~~~Ev~t~~li~~~~~~gk~v~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (259)
+..+++.+..+..+.++++|++|+|+.+|+||.++++.++++||+|++|++....+.| .
T Consensus 28 ~~~i~~~~~~~~~~~~~~~ia~y~~~~~E~~~~~l~~~~l~~gk~l~lP~~~~~~~~f---------------------~ 86 (191)
T COG0212 28 DQRIAKLLASLIEVKKAKTIALYVPFNGEIDTRPLIRQALRRGKRLLLPKLRDYKLLF---------------------L 86 (191)
T ss_pred HHHHHHHHHhccccccccEEEEEeccCCCCCcHHHHHHHHHcCCEEEEeEEEcCccee---------------------E
Confidence 5568888888888889999999999999999999999999999999999997644555 2
Q ss_pred EEeccCCccccccCcCccCCCCCCCCCcccccCCCCCEEEEcCceeeCCCCccccCCchhhhhhhhccccCCCccEEEEe
Q psy17389 152 VLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRMGRGKGYYDTYLSELKRISPHCKTIGLA 231 (259)
Q Consensus 152 ~~~~~~~~~~l~~~~~gi~eP~~~~~~~~~~~~~~idlvivP~lafd~~G~RLG~G~GyYDr~l~~~~~~~~~~~~igl~ 231 (259)
.+.... ...+..+.|||.||....... ....+|+||||+||||++|+|||||||||||||+.+.. .++.+||+|
T Consensus 87 ~~~~~~-~~~~~~~~~gi~eP~~~~~~~---~~~~iDlvlvP~Vafd~~G~RLG~GgGyYDR~la~~~~--~~~~~ig~~ 160 (191)
T COG0212 87 RYIPDP-LQPLIKNRFGILEPGEYGRKI---PPPEIDLVLVPLVAFDKQGYRLGYGGGYYDRYLANLRG--RKTPTVGIA 160 (191)
T ss_pred EecCCC-CcccccccccccCCCccCCcc---CCCcCCEEEeCceeECCCCccccCCCchHHHHHHhhcc--CCCCEEEEE
Confidence 322221 256788999999998664321 22679999999999999999999999999999999862 257899999
Q ss_pred cCcccccCCCCCCCCccCCEEEcCCCC
Q psy17389 232 FSCQMVEDLPMSDHDVPLDYVIHPLST 258 (259)
Q Consensus 232 ~~~Q~~~~ip~e~~D~~ld~iiTe~~~ 258 (259)
|+||+++.+|.|+||++||.|+||+|+
T Consensus 161 ~~~Q~v~~lP~e~hDv~ld~ivt~~~~ 187 (191)
T COG0212 161 YDCQLVDHLPREPHDVPLDAIVTEEGV 187 (191)
T ss_pred EeeeeeccCCCCcccCcccEEEeCCce
Confidence 999999999999999999999999985
No 7
>PRK10333 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional
Probab=99.65 E-value=1.5e-16 Score=134.46 Aligned_cols=93 Identities=18% Similarity=0.195 Sum_probs=69.1
Q ss_pred cccccCCcceEEEEeecCCCCccccCCceeecCCCCCCCccccCCCCccEEEeccccccccCcccchhcccHHHHhhccc
Q psy17389 3 LARYDKTEMTMLKLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRCTVSFSWPYIGCFLKH 82 (259)
Q Consensus 3 ~p~~~~~~m~~~~~~~~~~~~~l~~~~~gI~EP~~~~~~~~~~~~~~ldlvivP~~afd~~g~R~g~~~s~~i~drll~~ 82 (259)
||++.+.....|.|..+.+.++|.+|+|||+||... .....+.+++|++||||+|||++|+|+|| |+|||||+++.
T Consensus 65 lP~v~~~~~~~m~f~~~~~~~~l~~~~~gI~EP~~~--~~~~~~~~~iDlviVP~laFD~~G~RLG~--GgGyYDR~L~~ 140 (182)
T PRK10333 65 LPVLHPFSAGNLLFLNYHPQSELVMNRLKIHEPKLD--VRDVLPLSRLDVLITPLVAFDEYGQRLGM--GGGFYDRTLQN 140 (182)
T ss_pred EeEEecCCCCEEEEEECCCCCccccCCCCCCCCCcc--ccccCCcccCCEEEeCceEECCCCCcccC--CcchHHHHHHH
Confidence 788754322224455555677899999999999742 11224567899999999999999999999 99999999985
Q ss_pred ccccccceEEeeccCCC
Q psy17389 83 PVYEQSKRISIYVDRDD 99 (259)
Q Consensus 83 ~~~~~a~~I~ly~s~~~ 99 (259)
.......+|+++++++-
T Consensus 141 ~~~~~~~~igla~~~Q~ 157 (182)
T PRK10333 141 WQHYKTQPVGYAHDCQL 157 (182)
T ss_pred hcccCCcEEEEeeeeEE
Confidence 22122457999988864
No 8
>KOG4410|consensus
Probab=99.65 E-value=2e-16 Score=138.39 Aligned_cols=169 Identities=17% Similarity=0.288 Sum_probs=118.2
Q ss_pred cccccCccc-chhcccHHHHhhcccccccccceEEeeccCCCCCChHHHHHHHHhCCCEEEEceeecCCceeeeeccccc
Q psy17389 59 AFTETGKRC-TVSFSWPYIGCFLKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWS 137 (259)
Q Consensus 59 afd~~g~R~-g~~~s~~i~drll~~~~~~~a~~I~ly~s~~~Ev~t~~li~~~~~~gk~v~lP~~~~~~~~~~~~~~~~~ 137 (259)
.+..-.+|+ +|..+...+..|.++..|+.|+.|-+- ... .+..+...++...|++++|.....+-.|
T Consensus 53 ~prpvhhRIPnFvGa~~Aa~~~a~ld~F~~Aq~vKVn--pD~--pl~~~r~L~L~~~Ksll~PspRlrtglf-------- 120 (396)
T KOG4410|consen 53 GPRPVHHRIPNFVGADKAAALFANLDEFKKAQHVKVN--PDR--PLHEFRELALLADKSLLLPSPRLRTGLF-------- 120 (396)
T ss_pred CCcchhhcCccccchHHHHHHhhhhHHHhhcceeecC--CCc--hHHHHHHHHhhcccceecCCchhhccee--------
Confidence 344446677 455556666777778889999888663 333 5678888889999999999987666444
Q ss_pred ccchhhcceeeeeEEEeccCCcc--ccc--cCcCcc---CCCCCCCCCcccccCCCCCEEEEcCceeeCCCCccccCCch
Q psy17389 138 GEATLRSRVVLRELVLHRYEDLD--NLI--KNKENI---LQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRMGRGKGY 210 (259)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~--~l~--~~~~gi---~eP~~~~~~~~~~~~~~idlvivP~lafd~~G~RLG~G~Gy 210 (259)
.++....... .+. ...-|+ ..+.... ..-.+|||||..||+++.|+|||.|.||
T Consensus 121 -------------~kv~~~~~ate~i~~~c~tsqgv~ky~~~IGLD------s~lkvDlvViGSVavs~~G~RiGkGeGf 181 (396)
T KOG4410|consen 121 -------------LKVDVLADATEEIKKECLTSQGVQKYRSEIGLD------SGLKVDLVVIGSVAVSREGYRIGKGEGF 181 (396)
T ss_pred -------------eeeccCCCCcHHHHHHHHhhhhHHHhCcccccc------cCceEEEEEEeeEEecccceeeccCCch
Confidence 3332221110 010 011122 1222211 1125899999999999999999999999
Q ss_pred hhhhhhhcccc---CCCccEEEEecCcccccCCC---CCCCCccCCEEEcCCCC
Q psy17389 211 YDTYLSELKRI---SPHCKTIGLAFSCQMVEDLP---MSDHDVPLDYVIHPLST 258 (259)
Q Consensus 211 YDr~l~~~~~~---~~~~~~igl~~~~Q~~~~ip---~e~~D~~ld~iiTe~~~ 258 (259)
-|.-.+.+... .+++++|.+++|||++|+|| .+.||+|+|+|+||++.
T Consensus 182 AdLeygmli~mGAi~~~TpvVTiVHDcQvVD~iP~el~~~hD~pVDiI~TPTrv 235 (396)
T KOG4410|consen 182 ADLEYGMLIEMGAITPKTPVVTIVHDCQVVDSIPPELFQKHDTPVDIIATPTRV 235 (396)
T ss_pred hhhhhHHHHHhcccCCCCceEEEEecceeeccCCHHHHhhcCCCccEEeccceE
Confidence 99877655432 25789999999999999999 56999999999999874
No 9
>PF01812 5-FTHF_cyc-lig: 5-formyltetrahydrofolate cyclo-ligase family; InterPro: IPR002698 5-formyltetrahydrofolate cyclo-ligase or methenyl-THF synthetase 6.3.3.2 from EC catalyses the interchange of 5-formyltetrahydrofolate (5-FTHF) to 5-10-methenyltetrahydrofolate, this requires ATP and Mg2+ []. 5-FTHF is used in chemotherapy where it is clinically known as Leucovorin [].; GO: 0005524 ATP binding, 0030272 5-formyltetrahydrofolate cyclo-ligase activity, 0009396 folic acid-containing compound biosynthetic process; PDB: 1WKC_A 1SBQ_A 1U3G_A 1U3F_B 1YDM_B 1SOU_A 2JCB_B 3HY6_A 3HY4_A 3HXT_A ....
Probab=99.56 E-value=1.1e-15 Score=129.08 Aligned_cols=92 Identities=27% Similarity=0.388 Sum_probs=67.8
Q ss_pred cccccCCc--ceEEEEeecCCCCccccCCceeecCCCCCCCccccCCCCccEEEeccccccccCcccchhcccHHHHhhc
Q psy17389 3 LARYDKTE--MTMLKLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRCTVSFSWPYIGCFL 80 (259)
Q Consensus 3 ~p~~~~~~--m~~~~~~~~~~~~~l~~~~~gI~EP~~~~~~~~~~~~~~ldlvivP~~afd~~g~R~g~~~s~~i~drll 80 (259)
||++..+. |.++.+..+.+.+.|++|+|||+||.... ....+...+|+++|||+|||++|+|+|+ |+|||||++
T Consensus 71 lP~~~~~~~~~~~~~~~~~~~~~~l~~~~~gI~EP~~~~--~~~~~~~~idlvlVP~lafd~~G~RLG~--GgGyYDR~L 146 (186)
T PF01812_consen 71 LPRVHPDDGRMRMMEFRRYDSDDPLEKGRFGIPEPDGES--PPPDPPEEIDLVLVPGLAFDRNGNRLGY--GGGYYDRFL 146 (186)
T ss_dssp EEEEETTCTEECEEEEEEESSCGCCEECETTCEEEESTC--SEEGGGGG-SEEEEE-SEEETTSBEE-S--SSTHHHHHH
T ss_pred cceecccccccceeEEeecCCcccccccccCccCCcccc--ccccccccCCEEEeCcEEECCCCCeEec--CCCHHHhHH
Confidence 68766655 66777888878889999999999997632 1122234899999999999999999999 999999999
Q ss_pred ccccc--cccceEEeeccCC
Q psy17389 81 KHPVY--EQSKRISIYVDRD 98 (259)
Q Consensus 81 ~~~~~--~~a~~I~ly~s~~ 98 (259)
+.... ....+|+++++.+
T Consensus 147 ~~~~~~~~~~~~igl~~~~q 166 (186)
T PF01812_consen 147 ARLPPGRKKPLKIGLAFDFQ 166 (186)
T ss_dssp HHHTS-SS--EEEEEE-GGG
T ss_pred HhhhcccCCCeEEEEeehhh
Confidence 85322 2357899998876
No 10
>TIGR02727 MTHFS_bact 5,10-methenyltetrahydrofolate synthetase. This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism.
Probab=99.54 E-value=1.1e-14 Score=122.84 Aligned_cols=92 Identities=25% Similarity=0.325 Sum_probs=67.0
Q ss_pred cccccCCcceEEEEeecCCCCccccCCceeecCCCCCCCccccCCCCccEEEeccccccccCcccchhcccHHHHhhccc
Q psy17389 3 LARYDKTEMTMLKLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRCTVSFSWPYIGCFLKH 82 (259)
Q Consensus 3 ~p~~~~~~m~~~~~~~~~~~~~l~~~~~gI~EP~~~~~~~~~~~~~~ldlvivP~~afd~~g~R~g~~~s~~i~drll~~ 82 (259)
||++.++...++.+..+...+.|..|+|||+||.... ....+.+.+|++|||++|||++|+|+|| |+|||||+++.
T Consensus 71 lP~~~~~~~~~~~~~~~~~~~~l~~~~~gi~eP~~~~--~~~~~~~~idlvivP~lafD~~G~RLG~--GgGyYDR~L~~ 146 (181)
T TIGR02727 71 LPKVDPDGKEMLFFRIWSPSDLLTKGKFGILEPPGDS--TEPVDPDEIDLIIVPGVAFDRRGYRLGY--GGGYYDRFLAN 146 (181)
T ss_pred EEEEecCCCceeEEEecCCCCccccCCCCCCCCCCcc--cCcCCcccCCEEEeCceEEcCCCccccC--CcchHHHHHHh
Confidence 6887554311233444444457999999999997531 1134577899999999999999999999 99999999985
Q ss_pred ccccccceEEeeccCCC
Q psy17389 83 PVYEQSKRISIYVDRDD 99 (259)
Q Consensus 83 ~~~~~a~~I~ly~s~~~ 99 (259)
... ...+|++.++.+-
T Consensus 147 ~~~-~~~~igv~~~~q~ 162 (181)
T TIGR02727 147 LKG-KTVVVGLAFDFQL 162 (181)
T ss_pred ccc-CCCEEEEEeccee
Confidence 322 2237998888764
No 11
>PLN02812 5-formyltetrahydrofolate cyclo-ligase
Probab=99.51 E-value=2.2e-14 Score=123.90 Aligned_cols=92 Identities=26% Similarity=0.457 Sum_probs=66.7
Q ss_pred cccccCC--cceEEEEeecCCC-CccccCCceeecCCCCCCCcc-----ccCCCCccEEEeccccccccCcccchhcccH
Q psy17389 3 LARYDKT--EMTMLKLHRYEDL-DNLIKNKENILQHSQTEPTED-----AMKTGGLDLVVVPGRAFTETGKRCTVSFSWP 74 (259)
Q Consensus 3 ~p~~~~~--~m~~~~~~~~~~~-~~l~~~~~gI~EP~~~~~~~~-----~~~~~~ldlvivP~~afd~~g~R~g~~~s~~ 74 (259)
||++.++ +|.|..+. +. ++|.+|+|||+||........ ..+..++|+|||||+|||.+|+|+|| |+|
T Consensus 80 lP~~~~~~~~m~f~~~~---~~~~~l~~~~~gI~EP~~~~~~~~~~~~~~~~~~~iDliiVP~lafD~~G~RLG~--GgG 154 (211)
T PLN02812 80 VPRVEDKNSNMRMLHIT---DMADDLVANSMNILEPTPVDADGNPREDVLQAPEPLDLLLLPGLAFDRSGRRLGR--GGG 154 (211)
T ss_pred EeEEecCCCeEEEEEeC---CccccccCCCCCccCCCccccccccccccccCCCCCCEEEeCceEECCCCCcCcC--CCc
Confidence 7887533 46666554 44 679999999999975311100 11367899999999999999999999 999
Q ss_pred HHHhhccccc-------ccccceEEeeccCCC
Q psy17389 75 YIGCFLKHPV-------YEQSKRISIYVDRDD 99 (259)
Q Consensus 75 i~drll~~~~-------~~~a~~I~ly~s~~~ 99 (259)
||||+|+... .....+|+++++++-
T Consensus 155 yYDR~L~~~~~~~~~~~~~~~~~igla~~~Q~ 186 (211)
T PLN02812 155 YYDTFLSKYQELAKEKGWKQPLLVALSYSPQI 186 (211)
T ss_pred hHHHHHHHhhhhhccccCCCceEEEEeeheee
Confidence 9999998421 012447999888764
No 12
>KOG3093|consensus
Probab=99.44 E-value=2.5e-14 Score=118.35 Aligned_cols=92 Identities=30% Similarity=0.483 Sum_probs=71.6
Q ss_pred cccc--cCCcceEEEEeecCCCCccccCCceeecCCCCCCCccccCCC-CccEEEeccccccccCcccchhcccHHHHhh
Q psy17389 3 LARY--DKTEMTMLKLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTG-GLDLVVVPGRAFTETGKRCTVSFSWPYIGCF 79 (259)
Q Consensus 3 ~p~~--~~~~m~~~~~~~~~~~~~l~~~~~gI~EP~~~~~~~~~~~~~-~ldlvivP~~afd~~g~R~g~~~s~~i~drl 79 (259)
+|+| ..++|.++++...+..+.|..+.|||++|....+.+...... .+|++||||||||+.|.|+|. |+||||+|
T Consensus 79 iP~~~~~~s~m~Mvr~~~~e~~~~l~~t~w~i~qp~~~~~re~~~~t~~~lDLiivPGvAFd~~g~RlGh--GkGYYD~f 156 (200)
T KOG3093|consen 79 IPRCTHTSSKMDMVRIDHMEELESLPMTSWGIRQPKPGGPREDALETGHPLDLIIVPGVAFDRKGARLGH--GKGYYDDF 156 (200)
T ss_pred eeeeecCCCceeEEEeCChHHHhhCcccccCCCCCCCCCchhhhccCCCcceEEEecccccchhhhhccC--CcchHHHH
Confidence 6887 456788888888877788899999999998765554455554 699999999999999999999 99999999
Q ss_pred cccc----cccccceEEeecc
Q psy17389 80 LKHP----VYEQSKRISIYVD 96 (259)
Q Consensus 80 l~~~----~~~~a~~I~ly~s 96 (259)
++.- .+++..+||+++.
T Consensus 157 lkry~~~~~~~kp~~vgL~l~ 177 (200)
T KOG3093|consen 157 LKRYQIHAPEQKPLLVGLCLK 177 (200)
T ss_pred HHHHHHhccccCchhhhhhhh
Confidence 8731 2233345555543
No 13
>COG0212 5-formyltetrahydrofolate cyclo-ligase [Coenzyme metabolism]
Probab=99.37 E-value=6.8e-13 Score=112.92 Aligned_cols=91 Identities=24% Similarity=0.274 Sum_probs=71.3
Q ss_pred cccccCCcceEEEEeecCCCCccccCCceeecCCCCCCCccccCCCCccEEEeccccccccCcccchhcccHHHHhhccc
Q psy17389 3 LARYDKTEMTMLKLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRCTVSFSWPYIGCFLKH 82 (259)
Q Consensus 3 ~p~~~~~~m~~~~~~~~~~~~~l~~~~~gI~EP~~~~~~~~~~~~~~ldlvivP~~afd~~g~R~g~~~s~~i~drll~~ 82 (259)
+|++....+.|+.+.... ...+..++|||.||..... .... ..+|+++||+||||++|+|+|| |+|||||+++.
T Consensus 75 lP~~~~~~~~f~~~~~~~-~~~~~~~~~gi~eP~~~~~--~~~~-~~iDlvlvP~Vafd~~G~RLG~--GgGyYDR~la~ 148 (191)
T COG0212 75 LPKLRDYKLLFLRYIPDP-LQPLIKNRFGILEPGEYGR--KIPP-PEIDLVLVPLVAFDKQGYRLGY--GGGYYDRYLAN 148 (191)
T ss_pred EeEEEcCcceeEEecCCC-CcccccccccccCCCccCC--ccCC-CcCCEEEeCceeECCCCccccC--CCchHHHHHHh
Confidence 577654457777776543 3678899999999976422 2223 7899999999999999999999 99999999986
Q ss_pred ccccccceEEeeccCCC
Q psy17389 83 PVYEQSKRISIYVDRDD 99 (259)
Q Consensus 83 ~~~~~a~~I~ly~s~~~ 99 (259)
....+..+|++.+++|-
T Consensus 149 ~~~~~~~~ig~~~~~Q~ 165 (191)
T COG0212 149 LRGRKTPTVGIAYDCQL 165 (191)
T ss_pred hccCCCCEEEEEEeeee
Confidence 43357789999999864
No 14
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=45.37 E-value=6.4 Score=33.68 Aligned_cols=54 Identities=19% Similarity=0.199 Sum_probs=31.9
Q ss_pred CCCCEEEEcCceeeCCCCccccCCchhhhhhhhccccCCCccEEEEecCcccccCC
Q psy17389 185 GGLDLVVVPGRAFTETGKRMGRGKGYYDTYLSELKRISPHCKTIGLAFSCQMVEDL 240 (259)
Q Consensus 185 ~~idlvivP~lafd~~G~RLG~G~GyYDr~l~~~~~~~~~~~~igl~~~~Q~~~~i 240 (259)
.+.|.+|+||........+.=.--|+.++.+...... ..+++|+|+-.|++.+.
T Consensus 40 ~~~d~lIlpG~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~PvlGiC~G~q~l~~~ 93 (209)
T PRK13146 40 AAADRVVLPGVGAFADCMRGLRAVGLGEAVIEAVLAA--GRPFLGICVGMQLLFER 93 (209)
T ss_pred cCCCEEEECCCCcHHHHHHHHHHCCcHHHHHHHHHhC--CCcEEEECHHHHHHhhc
Confidence 3679999999654322211111124555555543221 35899999999987543
No 15
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=39.00 E-value=2.3e+02 Score=26.32 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=27.8
Q ss_pred CEEEEcCceeeCCCC----ccccCCchhhhhhhhccccCCCccEEEEe
Q psy17389 188 DLVVVPGRAFTETGK----RMGRGKGYYDTYLSELKRISPHCKTIGLA 231 (259)
Q Consensus 188 dlvivP~lafd~~G~----RLG~G~GyYDr~l~~~~~~~~~~~~igl~ 231 (259)
..+|. .=++|-++- |+=-.+||.|.|.+..+. ++..||++
T Consensus 90 ~~vif-vRpCDl~ai~~lD~vfl~~~~~D~yY~~rRe---~~~iV~~~ 133 (334)
T TIGR02910 90 NIIIF-LRSCDINAVKRLDYIYLKNGNEDYYYKRLRE---KVKFVLIE 133 (334)
T ss_pred cEEEE-EeccchhHHHHHHHHhcCCCCCCHHHHHHHh---CcEEEEEe
Confidence 35556 888998873 332278999999988765 35666665
No 16
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=33.68 E-value=14 Score=31.18 Aligned_cols=52 Identities=12% Similarity=0.231 Sum_probs=33.0
Q ss_pred CCCEEEEcCceeeCCCCccccCCchhhhhhhhccccCCCccEEEEecCcccccC
Q psy17389 186 GLDLVVVPGRAFTETGKRMGRGKGYYDTYLSELKRISPHCKTIGLAFSCQMVED 239 (259)
Q Consensus 186 ~idlvivP~lafd~~G~RLG~G~GyYDr~l~~~~~~~~~~~~igl~~~~Q~~~~ 239 (259)
.+|.+|+||.+--.+..|.-.--|+.+......... +.++.|+|.-.|++..
T Consensus 37 ~~d~lilPG~g~~~~~~~~l~~~~~~~~l~~~~~~~--~~pvlGiC~G~Q~l~~ 88 (201)
T PRK13152 37 KADKLLLPGVGSFKEAMKNLKELGFIEALKEQVLVQ--KKPILGICLGMQLFLE 88 (201)
T ss_pred CCCEEEECCCCchHHHHHHHHHcCcHHHHHHHHHhC--CCcEEEECHhHHHHhh
Confidence 478899999886444334433345665555432121 3579999999998754
No 17
>COG1332 CRISPR system related protein, RAMP superfamily [Defense mechanisms]
Probab=28.70 E-value=16 Score=34.11 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=13.4
Q ss_pred CccccCCchhhhhhhhc
Q psy17389 202 KRMGRGKGYYDTYLSEL 218 (259)
Q Consensus 202 ~RLG~G~GyYDr~l~~~ 218 (259)
-+||+||||+-.++-.+
T Consensus 303 l~lG~GgG~~skTi~~l 319 (369)
T COG1332 303 LHLGFGGGWRSKTIGIL 319 (369)
T ss_pred EEEecccceeeeeeeee
Confidence 36999999998776543
No 18
>KOG4410|consensus
Probab=27.18 E-value=33 Score=31.15 Aligned_cols=28 Identities=25% Similarity=0.277 Sum_probs=25.1
Q ss_pred CccEEEeccccccccCcccchhcccHHHHh
Q psy17389 49 GLDLVVVPGRAFTETGKRCTVSFSWPYIGC 78 (259)
Q Consensus 49 ~ldlvivP~~afd~~g~R~g~~~s~~i~dr 78 (259)
.+|+|++=-++.++.|+|+|. |.+|+|-
T Consensus 157 kvDlvViGSVavs~~G~RiGk--GeGfAdL 184 (396)
T KOG4410|consen 157 KVDLVVIGSVAVSREGYRIGK--GEGFADL 184 (396)
T ss_pred eEEEEEEeeEEecccceeecc--CCchhhh
Confidence 369999999999999999998 9998884
No 19
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=26.61 E-value=23 Score=29.79 Aligned_cols=51 Identities=20% Similarity=0.360 Sum_probs=28.7
Q ss_pred CCCEEEEcCceeeCCCCccccCCchhhhhhhhccccCCCccEEEEecCcccccC
Q psy17389 186 GLDLVVVPGRAFTETGKRMGRGKGYYDTYLSELKRISPHCKTIGLAFSCQMVED 239 (259)
Q Consensus 186 ~idlvivP~lafd~~G~RLG~G~GyYDr~l~~~~~~~~~~~~igl~~~~Q~~~~ 239 (259)
++|.+|+||..-..+..+.-.-.|+++........ ..+.+|+|+-.|++..
T Consensus 37 ~~d~lilpG~g~~~~~~~~l~~~~~~~~i~~~~~~---~~PvlGiC~G~Qll~~ 87 (199)
T PRK13181 37 GADKVILPGVGAFGQAMRSLRESGLDEALKEHVEK---KQPVLGICLGMQLLFE 87 (199)
T ss_pred cCCEEEECCCCCHHHHHHHHHHCChHHHHHHHHHC---CCCEEEECHhHHHhhh
Confidence 57999999953211111001113455544433322 3578999999998754
No 20
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=23.53 E-value=29 Score=30.75 Aligned_cols=49 Identities=12% Similarity=0.212 Sum_probs=34.3
Q ss_pred CCCEEEEcCceeeCCCCccccCCchhhhhhhhccccCCCccEEEEecCccccc
Q psy17389 186 GLDLVVVPGRAFTETGKRMGRGKGYYDTYLSELKRISPHCKTIGLAFSCQMVE 238 (259)
Q Consensus 186 ~idlvivP~lafd~~G~RLG~G~GyYDr~l~~~~~~~~~~~~igl~~~~Q~~~ 238 (259)
..|.+|+|| +|+..=.+|-.-.|.+|........ +.+..|+|--+|++-
T Consensus 38 ~~DgLILPG-Gfs~~~~~L~~~~gl~~~I~~~v~~---g~PvLGiC~GmqlLa 86 (248)
T PLN02832 38 GVSGLIIPG-GESTTMAKLAERHNLFPALREFVKS---GKPVWGTCAGLIFLA 86 (248)
T ss_pred cCCEEEeCC-CHHHHHHHHHhhcchHHHHHHHHHc---CCCEEEEChhHHHHH
Confidence 579999999 8886544565444677765444322 357899999999874
No 21
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=23.22 E-value=69 Score=27.86 Aligned_cols=50 Identities=22% Similarity=0.329 Sum_probs=31.6
Q ss_pred CCCEEEEcCceeeCCCCccccCCchhhh-----hhhhccccCCCccEEEEecCcccccC
Q psy17389 186 GLDLVVVPGRAFTETGKRMGRGKGYYDT-----YLSELKRISPHCKTIGLAFSCQMVED 239 (259)
Q Consensus 186 ~idlvivP~lafd~~G~RLG~G~GyYDr-----~l~~~~~~~~~~~~igl~~~~Q~~~~ 239 (259)
+.|.+|+||- |+ .|..++-|..+-.+ ++..+.. .+.+++|+|.-+|++-+
T Consensus 43 ~~d~liipGG-~~-~~d~l~~~~~~~~~~~~~~~l~~~~~--~g~pvlGIC~G~QlL~~ 97 (238)
T cd01740 43 DYDGVVLPGG-FS-YGDYLRAGAIAAASPLLMEEVKEFAE--RGGLVLGICNGFQILVE 97 (238)
T ss_pred hCCEEEECCC-CC-cccccccccccccChhHHHHHHHHHh--CCCeEEEECcHHHHHHH
Confidence 5799999995 32 33445545554333 3333322 24689999999998854
No 22
>PF06059 DUF930: Domain of Unknown Function (DUF930); InterPro: IPR009273 This is a family of bacterial proteins with undetermined function. All bacteria in this family are from the Rhizobiales order.
Probab=22.87 E-value=28 Score=26.52 Aligned_cols=50 Identities=24% Similarity=0.458 Sum_probs=35.7
Q ss_pred CEEEEcCceeeCCCCccccCCchhhhhhhhccccCCCccEEEEecCcccccCCCCCCCCc
Q psy17389 188 DLVVVPGRAFTETGKRMGRGKGYYDTYLSELKRISPHCKTIGLAFSCQMVEDLPMSDHDV 247 (259)
Q Consensus 188 dlvivP~lafd~~G~RLG~G~GyYDr~l~~~~~~~~~~~~igl~~~~Q~~~~ip~e~~D~ 247 (259)
+.+-+||.||-.+ |.||+--+.---. +...+| ++|++++=+.||.++|+-
T Consensus 47 ~~l~a~gaAFRs~-------g~WY~l~F~C~vd--~d~~~V-~sF~~~vG~~IP~s~W~~ 96 (101)
T PF06059_consen 47 NVLDAPGAAFRSR-------GKWYDLSFRCEVD--PDATKV-TSFSFKVGDPIPRSEWDK 96 (101)
T ss_pred CEEecCCcEEecC-------CeEEEEEEEEEEC--CCceEE-EEEeeccCCcCCHHHHHH
Confidence 5788999999765 5788876653221 133444 688888999999998864
No 23
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=21.38 E-value=41 Score=26.14 Aligned_cols=42 Identities=19% Similarity=0.234 Sum_probs=29.4
Q ss_pred CCCEEEEcCceeeCCCCccccCCchhhhhhhhccccCCCccEEEEec
Q psy17389 186 GLDLVVVPGRAFTETGKRMGRGKGYYDTYLSELKRISPHCKTIGLAF 232 (259)
Q Consensus 186 ~idlvivP~lafd~~G~RLG~G~GyYDr~l~~~~~~~~~~~~igl~~ 232 (259)
..|++|+||=+|+..-.+|...| ++.+...-.. ..+.+|+|-
T Consensus 44 ~ad~lVlPGGa~~~~~~~L~~~g---~~~i~~~v~~--g~p~LGICl 85 (114)
T cd03144 44 KTALLVVPGGADLPYCRALNGKG---NRRIRNFVRN--GGNYLGICA 85 (114)
T ss_pred CCCEEEECCCChHHHHHHHHhhC---cHHHHHHHHC--CCcEEEEec
Confidence 46899999977777777887764 6666654322 356788884
No 24
>PF10001 DUF2242: Uncharacterized protein conserved in bacteria (DUF2242); InterPro: IPR018718 This family includes putative lipoproteins and uncharacterised proteins.
Probab=20.67 E-value=39 Score=26.51 Aligned_cols=13 Identities=15% Similarity=0.616 Sum_probs=10.2
Q ss_pred CCchhhhhhhhcc
Q psy17389 207 GKGYYDTYLSELK 219 (259)
Q Consensus 207 G~GyYDr~l~~~~ 219 (259)
-+.|||||++...
T Consensus 106 ~~~FY~rFF~lv~ 118 (121)
T PF10001_consen 106 DGDFYDRFFQLVE 118 (121)
T ss_pred chhHHHHHHHHHH
Confidence 3689999998653
No 25
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=20.65 E-value=69 Score=28.54 Aligned_cols=50 Identities=22% Similarity=0.409 Sum_probs=31.0
Q ss_pred CCCCEEEEcCceeeCCCCccccCCchhhhh-------hhhccccCCCccEEEEecCccccc
Q psy17389 185 GGLDLVVVPGRAFTETGKRMGRGKGYYDTY-------LSELKRISPHCKTIGLAFSCQMVE 238 (259)
Q Consensus 185 ~~idlvivP~lafd~~G~RLG~G~GyYDr~-------l~~~~~~~~~~~~igl~~~~Q~~~ 238 (259)
.+.|.+|+||- |+- |..++.|.-+-.++ +..... ...+++|+|.-+|++-
T Consensus 47 ~~~DgLvipGG-fs~-gD~l~~g~~~~~~l~~~l~~~Ik~f~~--~gkpVLGICnG~QlLa 103 (261)
T PRK01175 47 SDYDCLVIPGG-FSA-GDYIRAGAIFAARLKAVLRKDIEEFID--EGYPIIGICNGFQVLV 103 (261)
T ss_pred hhCCEEEECCC-CCc-ccccccchhhHHHHHHHHHHHHHHHHH--CCCeEEEECHHHHHHH
Confidence 36899999994 532 33566665432222 222222 2457999999999874
No 26
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=20.60 E-value=56 Score=29.58 Aligned_cols=25 Identities=32% Similarity=0.572 Sum_probs=19.6
Q ss_pred CCchhhhhhhhccccCCCccEEEEecCc
Q psy17389 207 GKGYYDTYLSELKRISPHCKTIGLAFSC 234 (259)
Q Consensus 207 G~GyYDr~l~~~~~~~~~~~~igl~~~~ 234 (259)
|||=||..+..+.. ..+.||.++..
T Consensus 281 ~GGRYD~L~~~fg~---~~~AvGfa~~~ 305 (314)
T TIGR00443 281 GGGRYDNLLGRFGR---PLPATGFALNL 305 (314)
T ss_pred CCccHHHHHHHcCC---CCCCceEEecH
Confidence 79999999998742 46788888763
No 27
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=20.50 E-value=31 Score=29.09 Aligned_cols=47 Identities=13% Similarity=0.303 Sum_probs=29.1
Q ss_pred CCCEEEEcCceeeCCC-CccccCCchhhhhhhhccccCCCccEEEEecCcccccC
Q psy17389 186 GLDLVVVPGRAFTETG-KRMGRGKGYYDTYLSELKRISPHCKTIGLAFSCQMVED 239 (259)
Q Consensus 186 ~idlvivP~lafd~~G-~RLG~G~GyYDr~l~~~~~~~~~~~~igl~~~~Q~~~~ 239 (259)
.+|.||+||++-.... ..+= =.++.+...+. +.+.+|+|.-.|++.+
T Consensus 38 ~~d~iIlPG~G~~~~~~~~l~-~~~l~~~i~~~------~~PilGIClG~Qll~~ 85 (196)
T PRK13170 38 AADKLFLPGVGTAQAAMDQLR-ERELIDLIKAC------TQPVLGICLGMQLLGE 85 (196)
T ss_pred CCCEEEECCCCchHHHHHHHH-HcChHHHHHHc------CCCEEEECHHHHHHhh
Confidence 4688999998554332 2221 12455544432 2578999999998753
Done!