RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17389
(259 letters)
>gnl|CDD|233985 TIGR02727, MTHFS_bact, 5,10-methenyltetrahydrofolate synthetase.
This enzyme, 5,10-methenyltetrahydrofolate synthetase,
is also called 5-formyltetrahydrofolate cycloligase.
Function of bacterial proteins in this family was
inferred originally from the known activity of
eukaryotic homologs. Recently, activity was shown
explicitly for the member from Mycoplasma pneumonia.
Members of this family from alpha- and
gamma-proteobacteria, designated ygfA, are often found
in an operon with 6S structural RNA, and show a similar
pattern of high expression during stationary phase. The
function may be to deplete folate to slow 1-carbon
biosynthetic metabolism [Central intermediary
metabolism, One-carbon metabolism].
Length = 179
Score = 130 bits (329), Expect = 9e-38
Identities = 57/174 (32%), Positives = 85/174 (48%), Gaps = 28/174 (16%)
Query: 80 LKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSGE 139
L ++ +K I++Y+ E+ TR +I+ + GK +P+ D M +F + WS E
Sbjct: 32 LALIEWKNAKTIALYLPLRGEVDTRPLIEQLLKEGKRVALPKVDGDGKEM-LFFRIWSPE 90
Query: 140 ATLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTE 199
L K IL+ E+ + +DL++VPG AF
Sbjct: 91 QPL--------------------TKGPFGILE--PVGDLEEPVPPDEIDLIIVPGVAFDR 128
Query: 200 TGKRMGRGKGYYDTYLSELKRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVI 253
G R+G G GYYD +L+ LK I TIGLAF Q+V++LP HDVP+D +I
Sbjct: 129 RGYRLGYGGGYYDRFLARLKGI-----TIGLAFDFQLVDELPREPHDVPVDAII 177
Score = 41.1 bits (97), Expect = 2e-04
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 7 DKTEMTMLKLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKR 66
D ML + L K IL+ E+ + +DL++VPG AF G R
Sbjct: 75 DGDGKEMLFFRIWSPEQPLTKGPFGILE--PVGDLEEPVPPDEIDLIIVPGVAFDRRGYR 132
>gnl|CDD|216717 pfam01812, 5-FTHF_cyc-lig, 5-formyltetrahydrofolate cyclo-ligase
family. 5-formyltetrahydrofolate cyclo-ligase or
methenyl-THF synthetase EC:6.3.3.2 catalyzes the
interchange of 5-formyltetrahydrofolate (5-FTHF) to
5-10-methenyltetrahydrofolate, this requires ATP and
Mg2+. 5-FTHF is used in chemotherapy where it is
clinically known as Leucovorin.
Length = 182
Score = 112 bits (281), Expect = 1e-30
Identities = 53/174 (30%), Positives = 80/174 (45%), Gaps = 25/174 (14%)
Query: 82 HPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSGEAT 141
+++KR+++YV EI TR++I+ + GK +PR +
Sbjct: 34 FVGAQKAKRVALYVSVKGEIDTRELIELLLEEGKLVLLPRPRPDSGLVVRIT-------- 85
Query: 142 LRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETG 201
Y L + + + E E A+ +DLV+VPG AF G
Sbjct: 86 -------------PYYPETGLPSGPYGLPEPIEEEQRELAL--NQIDLVLVPGVAFDRQG 130
Query: 202 KRMGRGKGYYDTYLSELKRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVIHP 255
R+GRG GYYD YL+ L+ P T+GLA+ Q+VE LP HDVP+D ++
Sbjct: 131 YRLGRGGGYYDRYLARLQGHGP--LTVGLAYDEQLVERLPQEPHDVPVDEIVTE 182
Score = 28.1 bits (63), Expect = 3.1
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 13 MLKLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRC 67
++++ Y L + + + E E A+ +DLV+VPG AF G R
Sbjct: 81 VVRITPYYPETGLPSGPYGLPEPIEEEQRELAL--NQIDLVLVPGVAFDRQGYRL 133
>gnl|CDD|178408 PLN02812, PLN02812, 5-formyltetrahydrofolate cyclo-ligase.
Length = 211
Score = 111 bits (280), Expect = 4e-30
Identities = 53/191 (27%), Positives = 94/191 (49%), Gaps = 42/191 (21%)
Query: 83 PVYEQSKRISIYVD--RDDEISTRKIIQHICSSG-KECFIPRYDKTEMTMRIFRQTWSGE 139
P ++ SKR+ YV + E+ T KI+ I + K ++PR + MR+ T
Sbjct: 41 PWFKSSKRLCAYVSCAKLREVDTSKILSEILQNPDKRLYVPRVEDKNSNMRMLHIT---- 96
Query: 140 ATLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPT----EDAMKTGG-LDLVVVPG 194
+DL + N NIL+ + + ED ++ LDL+++PG
Sbjct: 97 --------------DMADDL---VANSMNILEPTPVDADGNPREDVLQAPEPLDLLLLPG 139
Query: 195 RAFTETGKRMGRGKGYYDTYLSELKRISPHCKT--------IGLAFSCQMVED--LPMSD 244
AF +G+R+GRG GYYDT+LS+ + + K + L++S Q++++ +P+ +
Sbjct: 140 LAFDRSGRRLGRGGGYYDTFLSKYQEL---AKEKGWKQPLLVALSYSPQILDEGSVPVDE 196
Query: 245 HDVPLDYVIHP 255
DV +D ++ P
Sbjct: 197 TDVLVDALVTP 207
Score = 47.3 bits (113), Expect = 1e-06
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 9/66 (13%)
Query: 8 KTEMTMLKL-HRYEDLDNLIKNKENILQHSQTEPT----EDAMKTGG-LDLVVVPGRAFT 61
+ M ML + +DL + N NIL+ + + ED ++ LDL+++PG AF
Sbjct: 87 NSNMRMLHITDMADDL---VANSMNILEPTPVDADGNPREDVLQAPEPLDLLLLPGLAFD 143
Query: 62 ETGKRC 67
+G+R
Sbjct: 144 RSGRRL 149
>gnl|CDD|223290 COG0212, COG0212, 5-formyltetrahydrofolate cyclo-ligase [Coenzyme
metabolism].
Length = 191
Score = 105 bits (265), Expect = 4e-28
Identities = 47/175 (26%), Positives = 77/175 (44%), Gaps = 27/175 (15%)
Query: 79 FLKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSG 138
+++K I++YV + EI TR +I+ GK +P+ ++ +
Sbjct: 35 LASLIEVKKAKTIALYVPFNGEIDTRPLIRQALRRGKRLLLPKLRDYKLLFLRYIPDPLQ 94
Query: 139 EATLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFT 198
++R + E + + I DLV+VP AF
Sbjct: 95 PLI-KNRFGILEPGEYGRKIPPPEI------------------------DLVLVPLVAFD 129
Query: 199 ETGKRMGRGKGYYDTYLSELKRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVI 253
+ G R+G G GYYD YL+ L+ T+G+A+ CQ+V+ LP HDVPLD ++
Sbjct: 130 KQGYRLGYGGGYYDRYLANLRGRKT--PTVGIAYDCQLVDHLPREPHDVPLDAIV 182
Score = 27.3 bits (61), Expect = 7.2
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
Query: 19 YEDLDNLIKNKENILQHSQTEPTEDAMKT--GGLDLVVVPGRAFTETGKR 66
+ L LIKN+ IL EP E K +DLV+VP AF + G R
Sbjct: 90 PDPLQPLIKNRFGIL-----EPGEYGRKIPPPEIDLVLVPLVAFDKQGYR 134
>gnl|CDD|182385 PRK10333, PRK10333, 5-formyltetrahydrofolate cyclo-ligase family
protein; Provisional.
Length = 182
Score = 64.6 bits (157), Expect = 8e-13
Identities = 49/203 (24%), Positives = 85/203 (41%), Gaps = 38/203 (18%)
Query: 58 RAFTETGKRCTVSFSWPYIGCFLKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKEC 117
RA T ++ + +P + +++++ D E+ T+ +I+ + +GK
Sbjct: 7 RALTPEQQQE---MGQQAATRMMTYPPVVMAHTVAVFLSFDGELDTQPLIEQLWRAGKRV 63
Query: 118 FIPRYDKTEMTMRIFRQTWSGEATLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEP 177
++P L L L+ Y L+ N+ I EP
Sbjct: 64 YLP--------------------VLHPFSAGNLLFLN-YHPQSELVMNRLKI-----HEP 97
Query: 178 ---TEDAMKTGGLDLVVVPGRAFTETGKRMGRGKGYYDTYLSELK--RISPHCKTIGLAF 232
D + LD+++ P AF E G+R+G G G+YD L + + P +G A
Sbjct: 98 KLDVRDVLPLSRLDVLITPLVAFDEYGQRLGMGGGFYDRTLQNWQHYKTQP----VGYAH 153
Query: 233 SCQMVEDLPMSDHDVPLDYVIHP 255
CQ+VE LP+ + D+PL V+ P
Sbjct: 154 DCQLVEKLPVEEWDIPLPAVVTP 176
>gnl|CDD|238527 cd01094, Alkanesulfonate_monoxygenase, Alkanesulfonate monoxygenase
is the monoxygenase of a two-component system that
catalyzes the conversion of alkanesulfonates to the
corresponding aldehyde and sulfite. Alkanesulfonate
monoxygenase (SsuD) has an absolute requirement for
reduced flavin mononucleotide (FMNH2), which is provided
by the NADPH-dependent FMN oxidoreductase (SsuE).
Length = 244
Score = 28.8 bits (65), Expect = 2.6
Identities = 4/19 (21%), Positives = 11/19 (57%)
Query: 121 RYDKTEMTMRIFRQTWSGE 139
RY + + + + R+ W+ +
Sbjct: 126 RYARADEFLEVLRRLWTSD 144
>gnl|CDD|215584 PLN03113, PLN03113, DNA ligase 1; Provisional.
Length = 744
Score = 29.2 bits (65), Expect = 2.9
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 179 EDAMKTGGLDLVVVPGRAFTETGKRMGRGKGY----YDTYLSELKRISPHCKTIGLAFSC 234
+D M++ G L +VP AF GKR G + YD+ E + I CK IG FS
Sbjct: 577 KDYMESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNKEEFQSI---CK-IGTGFSE 632
Query: 235 QMVED 239
++E+
Sbjct: 633 AVLEE 637
>gnl|CDD|185083 PRK15129, PRK15129, L-Ala-D/L-Glu epimerase; Provisional.
Length = 321
Score = 27.8 bits (62), Expect = 5.5
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 10/37 (27%)
Query: 229 GLAFSCQMVED---------LPMSDHDVPLDYVIHPL 256
GLA CQ++ D LP D D L+ IHPL
Sbjct: 185 GLAARCQLLADLGVAMLEQPLPAQD-DAALENFIHPL 220
>gnl|CDD|236474 PRK09350, PRK09350, poxB regulator PoxA; Provisional.
Length = 306
Score = 27.6 bits (62), Expect = 5.9
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 2 ELARYDKTEMTMLKLHR-YEDLDNLIKNKENILQ 34
E RY E TML+ +R + D+ L+ +++LQ
Sbjct: 92 EAGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQ 125
>gnl|CDD|144368 pfam00738, Polyhedrin, Polyhedrin. These proteins are found in
occlusion bodies in various viruses. The polyhedrin
protein protects the virus.
Length = 235
Score = 27.0 bits (60), Expect = 9.9
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 14/71 (19%)
Query: 156 YEDLDNLIKN---KENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRMGRGKGYYD 212
Y++L ++IKN K+++++H + E T D LD +V F +G GK
Sbjct: 12 YKNLGSVIKNAKRKKHLIEHEKEERTLDP-----LDQYMVAEDPF------LGPGKNQKL 60
Query: 213 TYLSELKRISP 223
T E++ + P
Sbjct: 61 TLFKEIRNVKP 71
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.407
Gapped
Lambda K H
0.267 0.0851 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,333,645
Number of extensions: 1252619
Number of successful extensions: 1128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1117
Number of HSP's successfully gapped: 19
Length of query: 259
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 164
Effective length of database: 6,723,972
Effective search space: 1102731408
Effective search space used: 1102731408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (25.9 bits)