RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17389
(259 letters)
>3hy3_A 5-formyltetrahydrofolate cyclo-ligase; antifolate, cancer,
ATP-binding, binding, magnesium, nucleotide-binding;
HET: 10F; 1.80A {Homo sapiens} PDB: 3hxt_A* 3hy4_A*
3hy6_A
Length = 203
Score = 170 bits (432), Expect = 3e-53
Identities = 63/178 (35%), Positives = 94/178 (52%), Gaps = 20/178 (11%)
Query: 79 FLKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSG 138
+ H Y++SKRISI++ DEI T +II+ I GK CFIPRY M + R
Sbjct: 40 VIAHSEYQKSKRISIFLSMQDEIETEEIIKDIFQRGKICFIPRYRFQSNHMDMVR----- 94
Query: 139 EATLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFT 198
+ E++ L K NI Q + + E+A+ TGGLDL+ +PG F
Sbjct: 95 --------------IESPEEISLLPKTSWNIPQPGEGDVREEALSTGGLDLIFMPGLGFD 140
Query: 199 ETGKRMGRGKGYYDTYLSELKRIS-PHCKTIGLAFSCQMVEDLPMSDHDVPLDYVIHP 255
+ G R+GRGKGYYD YL + T+ LAF Q+ +P++++D+ +D V++
Sbjct: 141 KHGNRLGRGKGYYDAYLKRCLQHQEVKPYTLALAFKEQICLQVPVNENDMKVDEVLYE 198
Score = 58.0 bits (141), Expect = 2e-10
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 5 RYDKTEMTMLKLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETG 64
R+ M M+++ E++ L K NI Q + + E+A+ TGGLDL+ +PG F + G
Sbjct: 84 RFQSNHMDMVRIESPEEISLLPKTSWNIPQPGEGDVREEALSTGGLDLIFMPGLGFDKHG 143
Query: 65 KR 66
R
Sbjct: 144 NR 145
>1ydm_A Hypothetical protein YQGN; northeast structural genomics, SR44,
X-RAY, PSI, protein structure initiative; 2.50A
{Bacillus subtilis}
Length = 187
Score = 161 bits (410), Expect = 6e-50
Identities = 47/180 (26%), Positives = 74/180 (41%), Gaps = 35/180 (19%)
Query: 79 FLKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSG 138
P ++ + I++ + R EI TR +I+ GK+ IP+
Sbjct: 32 LFSLPEWQNAGTIAVTISRGLEIPTRPVIEQAWEEGKQVCIPKCHPDT------------ 79
Query: 139 EATLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMK---TGGLDLVVVPGR 195
+++ Y+ D L +L EP + K +DL++VPG
Sbjct: 80 ----------KKMQFRTYQTDDQLETVYAGLL-----EPVIEKTKEVNPSQIDLMIVPGV 124
Query: 196 AFTETGKRMGRGKGYYDTYLSELKRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVIHP 255
F G R+G G GYYD YLSE + KT+ L CQ+ +P HD+P+ +I
Sbjct: 125 CFDVNGFRVGFGGGYYDRYLSEYE-----GKTVSLLLECQLFAHVPRLPHDIPVHKLITE 179
Score = 46.0 bits (110), Expect = 2e-06
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 8/56 (14%)
Query: 14 LKLHRYEDLDNLIKNKENILQHSQTEPTEDAMK---TGGLDLVVVPGRAFTETGKR 66
++ Y+ D L +L EP + K +DL++VPG F G R
Sbjct: 82 MQFRTYQTDDQLETVYAGLL-----EPVIEKTKEVNPSQIDLMIVPGVCFDVNGFR 132
>2jcb_A 5-formyltetrahydrofolate cyclo-ligase family PROT; folate
metabolism; HET: ADP; 1.6A {Bacillus anthracis}
Length = 200
Score = 158 bits (401), Expect = 2e-48
Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 35/178 (19%)
Query: 79 FLKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSG 138
+ + ++K I I + ++E++T II+ GK +P+ +K
Sbjct: 43 LYEQKEWAEAKTIGITLSMENEVNTYPIIEKAWKEGKRVVVPKCNKET------------ 90
Query: 139 EATLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPTED---AMKTGGLDLVVVPGR 195
R + + + D L N+ EP + +DL +VPG
Sbjct: 91 ----------RTMSFRQISNFDQLETVYMNLR-----EPIPALTEEVNADEIDLQIVPGV 135
Query: 196 AFTETGKRMGRGKGYYDTYLSELKRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVI 253
A+TE G+R+G G GYYD YL K KT+ LA+S QMVE +P+ D ++ +I
Sbjct: 136 AYTERGERIGYGGGYYDRYLVHYK-----GKTLSLAYSFQMVEHIPVEPFDKNVEKII 188
Score = 45.7 bits (109), Expect = 3e-06
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 8/56 (14%)
Query: 14 LKLHRYEDLDNLIKNKENILQHSQTEPTED---AMKTGGLDLVVVPGRAFTETGKR 66
+ + + D L N+ EP + +DL +VPG A+TE G+R
Sbjct: 93 MSFRQISNFDQLETVYMNLR-----EPIPALTEEVNADEIDLQIVPGVAYTERGER 143
>1sou_A 5,10-methenyltetrahydrofolate synthetase; structural genomics, PSI,
protein structure initiative, northeast structural
genomics consortium; NMR {Aquifex aeolicus} SCOP:
c.124.1.6
Length = 194
Score = 140 bits (355), Expect = 1e-41
Identities = 43/176 (24%), Positives = 71/176 (40%), Gaps = 36/176 (20%)
Query: 79 FLKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSG 138
P +++SK++++Y E+ + KE +P+ + E+
Sbjct: 33 LKSLPEFKKSKKVALYCPIKGEVDLTPLFPE-VLKEKELILPKVEGNEI----------- 80
Query: 139 EATLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPTED-AMKTGGLDLVVVPGRAF 197
L+R L I+ EP E + +D + VPG AF
Sbjct: 81 -------------SLYRVHSPACLGVGAFGIM-----EPVEGERVNPEDVDFIAVPGVAF 122
Query: 198 TETGKRMGRGKGYYDTYLSELKRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVI 253
G R+G GKGYYD L +K +G+A+S Q+ E LP D+P+D ++
Sbjct: 123 DLEGYRLGFGKGYYDRLLKRVK-----GLKVGVAYSFQVFERLPRDAWDIPVDVLV 173
Score = 40.7 bits (96), Expect = 2e-04
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 14 LKLHRYEDLDNLIKNKENILQHSQTEPTED-AMKTGGLDLVVVPGRAFTETGKR 66
+ L+R L I+ EP E + +D + VPG AF G R
Sbjct: 80 ISLYRVHSPACLGVGAFGIM-----EPVEGERVNPEDVDFIAVPGVAFDLEGYR 128
>1wkc_A HB8 TT1367 protein; structural genomics, riken structural
genomics/proteomi initiative, RSGI, unknown function;
1.70A {Thermus thermophilus} SCOP: c.124.1.6
Length = 184
Score = 136 bits (346), Expect = 2e-40
Identities = 40/175 (22%), Positives = 66/175 (37%), Gaps = 40/175 (22%)
Query: 79 FLKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSG 138
L + I +Y E++ +++ ++P+
Sbjct: 30 LLPWLRERGFRHILLYHPLPHELNLLPLMEAY---PARYYLPK----------------- 69
Query: 139 EATLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFT 198
V + L +H + L +L EPT LDLVVVPG AF
Sbjct: 70 -------VAGKGLTVHPFGPL---APGPFGLL-----EPTTPPEDPRVLDLVVVPGLAFD 114
Query: 199 ETGKRMGRGKGYYDTYLSELKRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVI 253
G R+G G+G+YD +L E++ T+G+ + LP DVP+D++
Sbjct: 115 REGYRLGHGQGFYDRFLKEVR-----AATVGVVPQALLFPALPRDPWDVPVDHLA 164
Score = 40.3 bits (95), Expect = 2e-04
Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 8/53 (15%)
Query: 14 LKLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKR 66
L +H + L +L EPT LDLVVVPG AF G R
Sbjct: 75 LTVHPFGPL---APGPFGLL-----EPTTPPEDPRVLDLVVVPGLAFDREGYR 119
>1sbq_A H91_ORF164, 5,10-methenyltetrahydrofolate synthetase homolog;
MTHFS, 5- formyltetrahydrofolate cyclo-ligase,
structural genomics; 2.20A {Mycoplasma pneumoniae} SCOP:
c.124.1.6 PDB: 1u3f_A* 1u3g_A*
Length = 189
Score = 115 bits (291), Expect = 4e-32
Identities = 36/178 (20%), Positives = 58/178 (32%), Gaps = 52/178 (29%)
Query: 79 FLKHPVYEQS-KRISIYVDRDDEISTRKIIQHICSSGK-ECFIPR-YDKTEMTMRIFRQT 135
+ + K I++Y +E++ + P+ TE+
Sbjct: 58 LVAFLTPKPCIKTIALYEPIKNEVTFVDFFFEFLKINQIRAVYPKVISDTEI-------- 109
Query: 136 WSGEATLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGR 195
I + N EP + +D ++P
Sbjct: 110 -------------------------IFIDQETNTF-----EPNQ-------IDCFLIPLV 132
Query: 196 AFTETGKRMGRGKGYYDTYLSELKRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVI 253
F + R+G GKGYYD YL +L IG+A+S Q + L DV LD +I
Sbjct: 133 GFNKDNYRLGFGKGYYDRYLMQLT---RQQPKIGIAYSFQKGDFLADP-WDVQLDLII 186
Score = 29.9 bits (68), Expect = 0.47
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 12/43 (27%)
Query: 24 NLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKR 66
I + N EP + +D ++P F + R
Sbjct: 110 IFIDQETNTF-----EPNQ-------IDCFLIPLVGFNKDNYR 140
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 5e-05
Identities = 37/261 (14%), Positives = 76/261 (29%), Gaps = 87/261 (33%)
Query: 58 RAFTETGKRCTVSFSWPYIGCFLKHPVYEQ-----SKRISIYVDR---DDEISTR----- 104
R T + P + Q +K + + DDE +T
Sbjct: 7 RPLTLSHGSLEHVLLVPT----ASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG 62
Query: 105 KIIQHICSSGKECFIPRYDK-TEMTMRIFRQTWSGEATLRSRVVLRE-----LVLHRYED 158
K + ++ S + + ++D+ + + F L L ++
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENC-----------YLEGNDIHALAAKLLQE 111
Query: 159 LDNLIKNKENILQ----------HSQTEPTE----DAMKTGGLDLVVVPGRAFTETGKRM 204
D + + +++ + + A+ G LV + F
Sbjct: 112 NDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI----F------- 160
Query: 205 GRGKGYYDTYLSELKRI----SPHCKTIGLAFSCQMVEDLPMSDHDV------------- 247
G G+G D Y EL+ + + + FS + + +L + D
Sbjct: 161 G-GQGNTDDYFEELRDLYQTYHVLVGDL-IKFSAETLSELIRTTLDAEKVFTQGLNILEW 218
Query: 248 --------PLDYVIH-PLSTP 259
DY++ P+S P
Sbjct: 219 LENPSNTPDKDYLLSIPISCP 239
Score = 42.7 bits (100), Expect = 8e-05
Identities = 39/286 (13%), Positives = 78/286 (27%), Gaps = 102/286 (35%)
Query: 2 ELA-RYDKTEMTMLKLHRYEDL-DNLIKNKENILQH-SQTEPTEDAMKTGGLDLV----- 53
EL Y Y L +LIK L +T + + T GL+++
Sbjct: 172 ELRDLYQ----------TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221
Query: 54 --VVPGRAFTETGKRCTVSFSWPYIG-----CFL-------KHPVYEQSKRISIYVDRDD 99
P + + ++ S P IG ++ P E +
Sbjct: 222 PSNTPDKDYL-----LSIPISCPLIGVIQLAHYVVTAKLLGFTPG-ELRSYLKGATGHSQ 275
Query: 100 EISTRKIIQHICSSGKECFIPRYDKTEMTMRI-FRQTWSGEATLRS-----RVVLRELVL 153
+ T I + E F + + + F + G +R L +L
Sbjct: 276 GLVTAVAIAE--TDSWESF---FVSVRKAITVLF---FIG---VRCYEAYPNTSLPPSIL 324
Query: 154 HRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRMGRGKGYYDT 213
+ +++ P+ M L + + + + ++
Sbjct: 325 EDSLE-------------NNEGVPS--PM------LSIS-NLTQEQVQDYVNK----TNS 358
Query: 214 YLSELKRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVI--HPLS 257
+L K++ I L + + V+ P S
Sbjct: 359 HLPAGKQVE-----ISL--------------VNGAKNLVVSGPPQS 385
Score = 37.0 bits (85), Expect = 0.005
Identities = 42/246 (17%), Positives = 66/246 (26%), Gaps = 79/246 (32%)
Query: 34 QHSQTEPTEDAMKTGGLDL-----VVVPGRAFTETGKRCTVS---FSWPYIGCFLKHPVY 85
Q SQ E M G+DL + FS + V
Sbjct: 1624 QGSQ----EQGM---GMDLYKTSKAA---QDVWNRADNHFKDTYGFS-------ILDIVI 1666
Query: 86 EQSKRISIYVD--RDDEISTR--KIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSGEAT 141
++I+ + I +I GK + E+ T+ E
Sbjct: 1667 NNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFK--EINEHSTSYTFRSEKG 1724
Query: 142 LRSRVVLRE-------LVLHRY---EDLDNLIKNKENILQ------HSQTE--------- 176
L L L L EDL K+K I HS E
Sbjct: 1725 L-----LSATQFTQPALTLMEKAAFEDL----KSKGLIPADATFAGHSLGEYAALASLAD 1775
Query: 177 --PTEDAMKTGGLDLVVVPGRAFTETGKRMGRGKGYYDTYLSELKRISPHCKTIGLAFSC 234
E ++ +V G R G+ Y + I+P + +FS
Sbjct: 1776 VMSIESLVE-----VVFYRGMTMQVAVPRDELGRSNYG-----MIAINP--GRVAASFSQ 1823
Query: 235 QMVEDL 240
+ ++ +
Sbjct: 1824 EALQYV 1829
Score = 30.8 bits (69), Expect = 0.56
Identities = 24/110 (21%), Positives = 39/110 (35%), Gaps = 36/110 (32%)
Query: 49 GLDLVVVPGRAFTETGKRCTVSF---SWPYIGCFLKHPVYEQSKRISIY-VDRDDEISTR 104
GLD +P F+E + + F + P+ H S V D I+
Sbjct: 401 GLDQSRIP---FSERKLKFSNRFLPVASPF------H---------SHLLVPASDLINKD 442
Query: 105 KIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSGEATLR--SRVVLRELV 152
+ ++ + K+ IP YD T+ G LR S + +V
Sbjct: 443 LVKNNVSFNAKDIQIPVYD-----------TFDGS-DLRVLSGSISERIV 480
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.033
Identities = 26/191 (13%), Positives = 61/191 (31%), Gaps = 48/191 (25%)
Query: 34 QHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRCTVSFSWPYIGCFLKHPVYEQSKRISI 93
H E E + D++ V AF + +F + K + + + I
Sbjct: 5 HHMDFETGE--HQYQYKDILSVFEDAFVD-------NFDCKDVQDMPK-SILSKEEIDHI 54
Query: 94 YVDRDDEISTRKIIQHICSSGKEC---FI-----PRYDKTEMTMRIFRQTWSGEATLRSR 145
+ +D T ++ + S +E F+ Y + +++
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK------------FLMSP-IKTE 101
Query: 146 VVLRELVLHRYED-LDNLIKNKENILQHSQT-EPTEDAMKTGGLDL-----VVVPGRAFT 198
++ Y + D L + + +++ + ++ L+L V++ G
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG---- 157
Query: 199 ETGKRM-GRGK 208
+ G GK
Sbjct: 158 -----VLGSGK 163
>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold,
phospholipid synthesis, phosphatidylcholine,
phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A
{Rattus norvegicus}
Length = 236
Score = 26.5 bits (58), Expect = 7.5
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 93 IYVDRDDEISTRKIIQHI 110
R + IST II I
Sbjct: 192 APTQRTEGISTSDIITRI 209
>3rao_A Putative luciferase-like monooxygenase; unknown, structural
genomics, PSI-biology, midwest center FO structural
genomics, MCSG, enzyme; 2.30A {Bacillus cereus}
Length = 371
Score = 26.6 bits (59), Expect = 9.3
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 121 RYDKTEMTMRIFRQTWSGE 139
RYD+TE + I + W E
Sbjct: 156 RYDRTEEFVTILKGLWKEE 174
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.407
Gapped
Lambda K H
0.267 0.0840 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,081,283
Number of extensions: 242220
Number of successful extensions: 547
Number of sequences better than 10.0: 1
Number of HSP's gapped: 527
Number of HSP's successfully gapped: 26
Length of query: 259
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 167
Effective length of database: 4,133,061
Effective search space: 690221187
Effective search space used: 690221187
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.1 bits)