RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17389
(259 letters)
>d1soua_ c.124.1.6 (A:) Hypothetical protein aq_1731 {Aquifex
aeolicus [TaxId: 63363]}
Length = 194
Score = 78.8 bits (193), Expect = 2e-18
Identities = 33/177 (18%), Positives = 59/177 (33%), Gaps = 34/177 (19%)
Query: 79 FLKHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSG 138
P +++SK++++Y E+ + + + + S
Sbjct: 33 LKSLPEFKKSKKVALYCPIKGEVDLTPLFPEVLKEKELILPKVE----GNEISLYRVHSP 88
Query: 139 EATLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFT 198
+ + +D + VPG AF
Sbjct: 89 ACLGVGA-------------------------FGIMEPVEGERVNPEDVDFIAVPGVAFD 123
Query: 199 ETGKRMGRGKGYYDTYLSELKRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVIHP 255
G R+G GKGYYD L +K +G+A+S Q+ E LP D+P+D ++
Sbjct: 124 LEGYRLGFGKGYYDRLLKRVK-----GLKVGVAYSFQVFERLPRDAWDIPVDVLVTE 175
>d1wkca_ c.124.1.6 (A:) Hypothetical protein TTHA1611 {Thermus
thermophilus [TaxId: 274]}
Length = 175
Score = 74.5 bits (182), Expect = 4e-17
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 187 LDLVVVPGRAFTETGKRMGRGKGYYDTYLSELKRISPHCKTIGLAFSCQMVEDLPMSDHD 246
LDLVVVPG AF G R+G G+G+YD +L E++ T+G+ + LP D
Sbjct: 103 LDLVVVPGLAFDREGYRLGHGQGFYDRFLKEVR-----AATVGVVPQALLFPALPRDPWD 157
Query: 247 VPLDYVIHP 255
VP+D++
Sbjct: 158 VPVDHLATE 166
>d1sbqa_ c.124.1.6 (A:) 5,10-methenyltetrahydrofolate synthetase
homolog MPN348 {Mycoplasma pneumoniae [TaxId: 2104]}
Length = 164
Score = 72.5 bits (177), Expect = 2e-16
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 188 DLVVVPGRAFTETGKRMGRGKGYYDTYLSELKRISPHCKTIGLAFSCQMVEDLPMSDHDV 247
D ++P F + R+G GKGYYD YL +L IG+A+S Q D DV
Sbjct: 100 DCFLIPLVGFNKDNYRLGFGKGYYDRYLMQLT---RQQPKIGIAYSFQKG-DFLADPWDV 155
Query: 248 PLDYVIHP 255
LD +I+
Sbjct: 156 QLDLIIND 163
>d2je6i2 b.84.4.2 (I:7-65) Exosome complex RNA-binding protein 1,
ECR1 {Sulfolobus solfataricus [TaxId: 2287]}
Length = 59
Score = 26.6 bits (59), Expect = 0.56
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 190 VVVPGRAFTETGKRMGRGKGYY 211
+VVPG E ++
Sbjct: 10 IVVPGELLAEGEFQIPWSPYIL 31
>d1rlma_ c.108.1.10 (A:) Sugar phosphatase SupH (YbiV) {Escherichia
coli [TaxId: 562]}
Length = 269
Score = 28.4 bits (62), Expect = 0.71
Identities = 29/224 (12%), Positives = 58/224 (25%), Gaps = 12/224 (5%)
Query: 21 DLDNLIKNKENILQHSQTEPTEDAMKTGGLDLVVVPGRAFTETGKRCTVSFSWPYIGCFL 80
D+D N + +K G+ VV G + +
Sbjct: 8 DMDGTFLNDAKTYNQPRFMAQYQELKKRGIKFVVASGNQYYQLISFFPELKDEISFVAEN 67
Query: 81 KHPVYEQSKRISIYVDRDDEISTRKIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSGEA 140
VYE K++ E++ + I K+ + + +
Sbjct: 68 GALVYEHGKQLFHG-----ELTRHESRIVIGELLKDKQLNFVACGLQSAYVSENAPEAFV 122
Query: 141 TLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTEPTEDAM--KTGGLDLVVVPGRAFT 198
L ++ R + Y+++D+++ L Q D + G+ V G F
Sbjct: 123 ALMAKHYHRLKPVKDYQEIDDVLFKFSLNLPDEQIPLVIDKLHVALDGIMKPVTSGFGFI 182
Query: 199 ETGKRMGRGKGYYDTYLSELKRISPHCKTIGLAFSCQMVEDLPM 242
+ G + + D M
Sbjct: 183 DLII-----PGLHKANGISRLLKRWDLSPQNVVAIGDSGNDAEM 221
>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos
taurus) [TaxId: 9913]}
Length = 293
Score = 28.1 bits (62), Expect = 0.99
Identities = 13/120 (10%), Positives = 37/120 (30%), Gaps = 14/120 (11%)
Query: 126 EMTMRIFRQTWSGEATLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTE--------P 177
++ + ++ R L++ E L+ + T
Sbjct: 176 QILKNLNHVSYGRLTFKYERDSNYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRISGA 235
Query: 178 TEDAMKTGGLDLVVVPGRAFTETGKRMGRGKGYYD----TYLSELKRISPHCKTIGLAFS 233
+E + GL + R+ + + + D Y++ ++++ G+ F+
Sbjct: 236 SEKDIVHSGLAYTME--RSARQIMRTAMKYNLGLDLRTAAYVNAIEKVFRVYNEAGVTFT 293
>d3c8wa1 d.347.1.1 (A:5-254) Acetoacetate decarboxylase {Legionella
pneumophila [TaxId: 446]}
Length = 250
Score = 26.8 bits (59), Expect = 2.6
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 7/55 (12%)
Query: 105 KIIQHICSSGKECFIPRYDKTEMTMRIFRQTWSGEATLRSRVVLRELVLHRYEDL 159
K I ++ + + + T++T + W+G +L L L +L
Sbjct: 175 KNIPNVDGTPLVNQLTKTYLTDIT---VKGAWTGPGSLE----LHPHALAPISNL 222
>d1sk4a_ d.118.1.1 (A:) Peptidoglycan recognition protein I-alpha
{Human (Homo sapiens) [TaxId: 9606]}
Length = 163
Score = 26.3 bits (57), Expect = 2.7
Identities = 10/81 (12%), Positives = 19/81 (23%), Gaps = 27/81 (33%)
Query: 117 CFIPRYDKTEMTMRIFRQTWSGEATLRSRVVLRELVLHRYEDLDNLIKNKENILQHSQTE 176
FI + + A L + L + + + ++ HS
Sbjct: 98 AFIGYFVEKPPN----------AAALEAAQDLIQCAVVEGY-----LTPNYLLMGHSDVV 142
Query: 177 PTEDAMKTGGLDLVVVPGRAF 197
PG+A
Sbjct: 143 NILS------------PGQAL 151
>d1j8ra_ b.2.3.3 (A:) PapG adhesin receptor-binding domain
{Escherichia coli [TaxId: 562]}
Length = 196
Score = 26.0 bits (57), Expect = 4.3
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 15/57 (26%)
Query: 208 KGY-YDTYLSELKRISPHCKTIG-----------LAFSCQMVEDLPMSDHDVPLDYV 252
KGY +D + + C+ G + F + DLP+ D+ V + Y
Sbjct: 103 KGYKWDERAFDAGNL---CQKPGEITRLTEKFDDIIFKVALPADLPLGDYSVKIPYT 156
>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo
sapiens), beta-chain [TaxId: 9606]}
Length = 114
Score = 24.7 bits (53), Expect = 6.4
Identities = 8/90 (8%), Positives = 20/90 (22%), Gaps = 12/90 (13%)
Query: 52 LVVVPGRAFTETGKRCTVSFSWPYIGCFLKHPVYEQSKRISIYVDRDDEISTRKIIQHIC 111
L G+ T + C + + + + + P
Sbjct: 9 LFRKEGQNVTLS---CEQNLNHDAMYWYRQDPGQGLRLIYYSQ---------IVNDFQKG 56
Query: 112 SSGKECFIPRYDKTEMTMRIFRQTWSGEAT 141
+ + R K + + + A
Sbjct: 57 DIAEGYSVSREKKESFPLTVTSAQKNPTAF 86
>d2gtln1 b.61.7.1 (N:102-229) Extracellular hemoglobin linker l2
subunit {Common earthworm (Lumbricus terrestris) [TaxId:
6398]}
Length = 128
Score = 24.8 bits (54), Expect = 6.6
Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 4/52 (7%)
Query: 207 GKGYYDTYLSELKRISPHCKTIGLAFSCQMVEDLPMSDHDVPLDYVIHPLST 258
KGYY+ L + LA C D++ + + +
Sbjct: 67 AKGYYNFASRRLILLPTDDHDDHLAVVC----SFNRGDNERAECHRVTEATL 114
>d1coza_ c.26.1.2 (A:) CTP:glycerol-3-phosphate cytidylyltransferase
{Bacillus subtilis [TaxId: 1423]}
Length = 126
Score = 24.9 bits (53), Expect = 7.0
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 93 IYVDRDDEISTRKIIQHI 110
+Y+ R + IST KI + I
Sbjct: 109 VYLPRTEGISTTKIKEEI 126
>d1gtda_ d.284.1.1 (A:) PurS subunit of FGAM synthetase {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 82
Score = 23.8 bits (52), Expect = 9.5
Identities = 4/25 (16%), Positives = 12/25 (48%)
Query: 87 QSKRISIYVDRDDEISTRKIIQHIC 111
+ I+ +D D + + ++ +C
Sbjct: 38 TTDVITFTMDEDSLEAVEREVEDMC 62
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.407
Gapped
Lambda K H
0.267 0.0600 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 998,138
Number of extensions: 46891
Number of successful extensions: 145
Number of sequences better than 10.0: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 18
Length of query: 259
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 176
Effective length of database: 1,268,006
Effective search space: 223169056
Effective search space used: 223169056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.1 bits)