BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17390
(522 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 96/187 (51%), Gaps = 11/187 (5%)
Query: 147 GVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHIC 206
G+LGN ++ + RH M++ N YI +LAL D LV++ +PF T L WP+G +C
Sbjct: 139 GLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLVLLT-LPFQGTDILLGFWPFGNALC 197
Query: 207 KLSEATRDISIGVSVFTLTALSAERYCAIVNPIRS---HISSKPLTIVTAFAIWVLAIIL 263
K A ++ S FTLTA+S +RY AI +PIR+ SSK + AIW LA ++
Sbjct: 198 KTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAV--NVAIWALASVV 255
Query: 264 ALPSALFSHVQPATTASNDTIYFCSPFPIEYGQQYKQTVVLCKFLAYYLGPLCVIACFYI 323
+P A+ Q + P P +Y + +C FL ++ P+ VI+ Y
Sbjct: 256 GVPVAIMGSAQVEDEEIECLVEI--PTPQDY---WGPVFAICIFLFSFIVPVLVISVCYS 310
Query: 324 LMARHLE 330
LM R L
Sbjct: 311 LMIRRLR 317
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 101/196 (51%), Gaps = 5/196 (2%)
Query: 147 GVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHIC 206
G++GN ++ + R+ M++ N YI +LAL D LV +PF ST+Y + SWP+G +C
Sbjct: 36 GLVGNSLVMFVIIRYTKMKTATNIYIFNLALADALVTTT-MPFQSTVYLMNSWPFGDVLC 94
Query: 207 KLSEATRDISIGVSVFTLTALSAERYCAIVNPIRSHISSKPLTI-VTAFAIWVLAIILAL 265
K+ + ++ S+FTLT +S +RY A+ +P+++ PL + IW+L+ + +
Sbjct: 95 KIVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPLKAKIINICIWLLSSSVGI 154
Query: 266 PSALFSHVQPATTASNDTIYFCSPFPIEYGQQYKQTVVLCKFLAYYLGPLCVIACFYILM 325
+ + + D I FP + + + +C F+ ++ P+ +I Y LM
Sbjct: 155 SAIVLGGTK--VREDVDVIECSLQFPDDDYSWWDLFMKICVFIFAFVIPVLIIIVCYTLM 212
Query: 326 ARHLELSTRNMPGELL 341
L+ S R + G +
Sbjct: 213 ILRLK-SVRLLSGNIF 227
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 97/192 (50%), Gaps = 10/192 (5%)
Query: 147 GVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHIC 206
G+LGN ++ R+ +++ N YI +LAL D L +PF S Y +E+WP+G +C
Sbjct: 28 GLLGNVLVMFGIVRYTKLKTATNIYIFNLALADALAT-STLPFQSAKYLMETWPFGELLC 86
Query: 207 KLSEATRDISIGVSVFTLTALSAERYCAIVNPIRSHISSKPLTI-VTAFAIWVLAIILAL 265
K + ++ S+FTLT +S +RY A+ +P+++ P + IWVLA + +
Sbjct: 87 KAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPAKAKLINICIWVLASGVGV 146
Query: 266 PSALFSHVQPATTASNDTIYFCSPFPIEYGQQYKQTVV-LCKFLAYYLGPLCVIACFYIL 324
P + + QP A + F SP Y TV +C FL ++ P+ +I Y L
Sbjct: 147 PIMVMAVTQPRDGAVVCMLQFPSP------SWYWDTVTKICVFLFAFVVPILIITVCYGL 200
Query: 325 MARHLELSTRNM 336
M L S RN+
Sbjct: 201 MLLRLR-SVRNI 211
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 95/191 (49%), Gaps = 8/191 (4%)
Query: 147 GVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHIC 206
G+ GN ++ + R+ M++ N YI +LAL D L +PF S Y + +WP+G +C
Sbjct: 31 GLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALAT-STLPFQSVNYLMGTWPFGNILC 89
Query: 207 KLSEATRDISIGVSVFTLTALSAERYCAIVNPIRSHISSKPLTI-VTAFAIWVLAIILAL 265
K+ + ++ S+FTL +S +RY A+ +P+++ P + W+L+ + L
Sbjct: 90 KIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGL 149
Query: 266 PSALFSHVQPATTASNDTIYFCSPFPIEYGQQYKQTVVLCKFLAYYLGPLCVIACFYILM 325
P + + + + T+ F P ++ + +C F+ ++ P+ +I Y LM
Sbjct: 150 PVMFMATTKYRQGSIDCTLTFSHP-----TWYWENLLKICVFIFAFIMPVLIITVCYGLM 204
Query: 326 ARHLELSTRNM 336
L+ S RN+
Sbjct: 205 ILRLK-SVRNI 214
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 78/145 (53%), Gaps = 8/145 (5%)
Query: 147 GVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHIC 206
G++GNG ++L+ K +RS+ + Y L L++ DLL +I +PF + + + +W +G +C
Sbjct: 62 GIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVIT-LPFWA-VDAVANWYFGNFLC 119
Query: 207 KLSEATRDISIGVSVFTLTALSAERYCAIVNPIRSHISSKPLT-IVTAFAIWVLAIILAL 265
K +++ SV+ L +S +RY AIV+ S K L V +W+ A++L +
Sbjct: 120 KAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTI 179
Query: 266 PSALFSHVQPATTASNDTIYFCSPF 290
P +F++V A D Y C F
Sbjct: 180 PDFIFANVSEA-----DDRYICDRF 199
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 78/145 (53%), Gaps = 8/145 (5%)
Query: 147 GVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHIC 206
G++GNG ++L+ K +RS+ + Y L L++ DLL +I +PF + + + +W +G +C
Sbjct: 62 GIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVIT-LPFWA-VDAVANWYFGNFLC 119
Query: 207 KLSEATRDISIGVSVFTLTALSAERYCAIVNPIRSHISSKPLT-IVTAFAIWVLAIILAL 265
K +++ SV+ L +S +RY AIV+ S K L V +W+ A++L +
Sbjct: 120 KAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTI 179
Query: 266 PSALFSHVQPATTASNDTIYFCSPF 290
P +F++V A D Y C F
Sbjct: 180 PDFIFANVSEA-----DDRYICDRF 199
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 78/145 (53%), Gaps = 8/145 (5%)
Query: 147 GVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHIC 206
G++GNG ++L+ K +RS+ + Y L L++ DLL +I +PF + + + +W +G +C
Sbjct: 62 GIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVIT-LPFWA-VDAVANWYFGNFLC 119
Query: 207 KLSEATRDISIGVSVFTLTALSAERYCAIVNPIRSHISSKPLT-IVTAFAIWVLAIILAL 265
K +++ SV+ L +S +RY AIV+ S K L V +W+ A++L +
Sbjct: 120 KAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTI 179
Query: 266 PSALFSHVQPATTASNDTIYFCSPF 290
P +F++V A D Y C F
Sbjct: 180 PDFIFANVSEA-----DDRYICDRF 199
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 93/197 (47%), Gaps = 9/197 (4%)
Query: 157 IFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHICKLSEATRDIS 216
I HK MR+V N ++++LA + + T W YG CK +
Sbjct: 56 IILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFFPIAA 115
Query: 217 IGVSVFTLTALSAERYCAIVNPIRSHISSKPLTIVTAFAIWVLAIILALPSALFSHVQPA 276
+ S++++TA++ +RY AI++P++ +S+ +V IWVLA++LA P +S
Sbjct: 116 VFASIYSMTAVAFDRYMAIIHPLQPRLSATATKVVIC-VIWVLALLLAFPQGYYS----- 169
Query: 277 TTASNDTIYFCS-PFPIEYGQQYKQTVVLCKFLAYYLGPLCVIACFYILMARHLELSTRN 335
TT + + C +P + Y++ +C + Y PL VI Y ++ + L
Sbjct: 170 TTETMPSRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVG--ITLWASE 227
Query: 336 MPGELLGQSSQSRARKK 352
+PG+ + + + K+
Sbjct: 228 IPGDSSDRYHEQVSAKR 244
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 67/125 (53%), Gaps = 3/125 (2%)
Query: 148 VLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHICK 207
++GN +++ F +K +++V N ++LSLA DL++ + + +T + W G C
Sbjct: 27 IIGNILVIVAFKVNKQLKTVNNYFLLSLACADLIIGVISMNLFTTYIIMNRWALGNLACD 86
Query: 208 LSEATRDISIGVSVFTLTALSAERYCAIVNPI--RSHISSKPLTIVTAFAIWVLAIILAL 265
L + ++ SV L +S +RY +I P+ R+ ++K ++ A WV++ +L
Sbjct: 87 LWLSIDYVASNASVMNLLVISFDRYFSITRPLTYRAKRTTKRAGVMIGLA-WVISFVLWA 145
Query: 266 PSALF 270
P+ LF
Sbjct: 146 PAILF 150
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 95/200 (47%), Gaps = 13/200 (6%)
Query: 160 RHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTL--ESWPYGPHICKLSEATRDISI 217
+HK +R+ N +L+LA+ DL ++ G FT+TLYT + +GP C L +
Sbjct: 65 QHKKLRTPLNYILLNLAVADLFMVFGG--FTTTLYTSLHGYFVFGPTGCNLEGFFATLGG 122
Query: 218 GVSVFTLTALSAERYCAIVNPIRSHISSKPLTIVTAFAIWVLAIILALPSAL-FSHVQPA 276
+++++L L+ ERY + P+ + + I+ WV+A+ A P + +S P
Sbjct: 123 EIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPE 182
Query: 277 TTASNDTIYFCSPFPIEYGQQYKQTVVLCKFLAYYLGPLCVIACFYILMARHLELSTRNM 336
+ I + +P + + ++ V+ F+ +++ PL VI Y L + +
Sbjct: 183 GMQCSCGIDYYTP----HEETNNESFVIYMFVVHFIIPLIVIFFCY----GQLVFTVKEA 234
Query: 337 PGELLGQSSQSRARKKVAKM 356
+ ++ +A K+V +M
Sbjct: 235 AAQQQESATTQKAEKEVTRM 254
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 95/200 (47%), Gaps = 13/200 (6%)
Query: 160 RHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTL--ESWPYGPHICKLSEATRDISI 217
+HK +R+ N +L+LA+ DL ++ G FT+TLYT + +GP C L +
Sbjct: 64 QHKKLRTPLNYILLNLAVADLFMVFGG--FTTTLYTSLHGYFVFGPTGCNLEGFFATLGG 121
Query: 218 GVSVFTLTALSAERYCAIVNPIRSHISSKPLTIVTAFAIWVLAIILALPSAL-FSHVQPA 276
+++++L L+ ERY + P+ + + I+ WV+A+ A P + +S P
Sbjct: 122 EIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPE 181
Query: 277 TTASNDTIYFCSPFPIEYGQQYKQTVVLCKFLAYYLGPLCVIACFYILMARHLELSTRNM 336
+ I + +P + + ++ V+ F+ +++ PL VI Y L + +
Sbjct: 182 GMQCSCGIDYYTP----HEETNNESFVIYMFVVHFIIPLIVIFFCY----GQLVFTVKEA 233
Query: 337 PGELLGQSSQSRARKKVAKM 356
+ ++ +A K+V +M
Sbjct: 234 AAQQQESATTQKAEKEVTRM 253
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 95/200 (47%), Gaps = 13/200 (6%)
Query: 160 RHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTL--ESWPYGPHICKLSEATRDISI 217
+HK +R+ N +L+LA+ DL ++ G FT+TLYT + +GP C L +
Sbjct: 65 QHKKLRTPLNYILLNLAVADLFMVFGG--FTTTLYTSLHGYFVFGPTGCNLEGFFATLGG 122
Query: 218 GVSVFTLTALSAERYCAIVNPIRSHISSKPLTIVTAFAIWVLAIILALPSAL-FSHVQPA 276
+++++L L+ ERY + P+ + + I+ WV+A+ A P + +S P
Sbjct: 123 EIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPE 182
Query: 277 TTASNDTIYFCSPFPIEYGQQYKQTVVLCKFLAYYLGPLCVIACFYILMARHLELSTRNM 336
+ I + +P + + ++ V+ F+ +++ PL VI Y L + +
Sbjct: 183 GMQCSCGIDYYTP----HEETNNESFVIYMFVVHFIIPLIVIFFCY----GQLVFTVKEA 234
Query: 337 PGELLGQSSQSRARKKVAKM 356
+ ++ +A K+V +M
Sbjct: 235 AAQQQESATTQKAEKEVTRM 254
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 95/200 (47%), Gaps = 13/200 (6%)
Query: 160 RHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTL--ESWPYGPHICKLSEATRDISI 217
+HK +R+ N +L+LA+ DL ++ G FT+TLYT + +GP C L +
Sbjct: 64 QHKKLRTPLNYILLNLAVADLFMVFGG--FTTTLYTSLHGYFVFGPTGCNLEGFFATLGG 121
Query: 218 GVSVFTLTALSAERYCAIVNPIRSHISSKPLTIVTAFAIWVLAIILALPSAL-FSHVQPA 276
+++++L L+ ERY + P+ + + I+ WV+A+ A P + +S P
Sbjct: 122 EIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPE 181
Query: 277 TTASNDTIYFCSPFPIEYGQQYKQTVVLCKFLAYYLGPLCVIACFYILMARHLELSTRNM 336
+ I + +P + + ++ V+ F+ +++ PL VI Y L + +
Sbjct: 182 GMQCSCGIDYYTP----HEETNNESFVIYMFVVHFIIPLIVIFFCY----GQLVFTVKEA 233
Query: 337 PGELLGQSSQSRARKKVAKM 356
+ ++ +A K+V +M
Sbjct: 234 AAQQQESATTQKAEKEVTRM 253
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 95/200 (47%), Gaps = 13/200 (6%)
Query: 160 RHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTL--ESWPYGPHICKLSEATRDISI 217
+HK +R+ N +L+LA+ DL ++ G FT+TLYT + +GP C L +
Sbjct: 65 QHKKLRTPLNYILLNLAVADLFMVFGG--FTTTLYTSLHGYFVFGPTGCNLEGFFATLGG 122
Query: 218 GVSVFTLTALSAERYCAIVNPIRSHISSKPLTIVTAFAIWVLAIILALPSAL-FSHVQPA 276
+++++L L+ ERY + P+ + + I+ WV+A+ A P + +S P
Sbjct: 123 EIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPE 182
Query: 277 TTASNDTIYFCSPFPIEYGQQYKQTVVLCKFLAYYLGPLCVIACFYILMARHLELSTRNM 336
+ I + +P + + ++ V+ F+ +++ PL VI Y L + +
Sbjct: 183 GMQCSCGIDYYTP----HEETNNESFVIYMFVVHFIIPLIVIFFCY----GQLVFTVKEA 234
Query: 337 PGELLGQSSQSRARKKVAKM 356
+ ++ +A K+V +M
Sbjct: 235 AAQQQESATTQKAEKEVTRM 254
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 96/200 (48%), Gaps = 13/200 (6%)
Query: 160 RHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYT-LESW-PYGPHICKLSEATRDISI 217
+HK +R+ N +L+LA+ DL ++ G FT+TLYT L + +GP C L +
Sbjct: 65 QHKKLRTPLNYILLNLAVADLFMVFGG--FTTTLYTSLHGYFVFGPTGCNLQGFFATLGG 122
Query: 218 GVSVFTLTALSAERYCAIVNPIRSHISSKPLTIVTAFAIWVLAIILALPSAL-FSHVQPA 276
+++++L L+ ERY + P+ + + I+ WV+A+ A P + +S P
Sbjct: 123 EIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPE 182
Query: 277 TTASNDTIYFCSPFPIEYGQQYKQTVVLCKFLAYYLGPLCVIACFYILMARHLELSTRNM 336
+ I + +P + + ++ V+ F+ +++ PL VI Y L + +
Sbjct: 183 GMQCSCGIDYYTP----HEETNNESFVIYMFVVHFIIPLIVIFFCY----GQLVFTVKEA 234
Query: 337 PGELLGQSSQSRARKKVAKM 356
+ ++ +A K+V +M
Sbjct: 235 AAQQQESATTQKAEKEVTRM 254
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 71/129 (55%), Gaps = 11/129 (8%)
Query: 148 VLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLES----WPYGP 203
++GN +++ ++++++V N ++ SLA DL++ GV F+ LYTL + WP GP
Sbjct: 38 IIGNILVMVSIKVNRHLQTVNNYFLFSLACADLII---GV-FSMNLYTLYTVIGYWPLGP 93
Query: 204 HICKLSEATRDISIGVSVFTLTALSAERYCAIVNPIRSHI--SSKPLTIVTAFAIWVLAI 261
+C L A + SV L +S +RY + P+ + ++K ++ A A WVL+
Sbjct: 94 VVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIA-AAWVLSF 152
Query: 262 ILALPSALF 270
IL P+ LF
Sbjct: 153 ILWAPAILF 161
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 61/114 (53%), Gaps = 1/114 (0%)
Query: 148 VLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHICK 207
V GN ++ A+ + +++V N +I SLA DL++ + VPF + ++ W +G C+
Sbjct: 56 VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCE 115
Query: 208 LSEATRDISIGVSVFTLTALSAERYCAIVNPIR-SHISSKPLTIVTAFAIWVLA 260
+ + + S++TL ++ +RY AI +P + + +K V +W+++
Sbjct: 116 FWTSIDVLCVTASIWTLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVS 169
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 52/93 (55%)
Query: 148 VLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHICK 207
V GN ++ + ++++ N +I SLA DL+V + VPF +TL +W +G +C+
Sbjct: 26 VAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCE 85
Query: 208 LSEATRDISIGVSVFTLTALSAERYCAIVNPIR 240
L + + + S+ TL ++ +RY AI +P R
Sbjct: 86 LWTSLDVLCVTASIETLCVIAIDRYLAITSPFR 118
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 52/93 (55%)
Query: 148 VLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHICK 207
V GN ++ + ++++ N +I SLA DL+V + VPF +TL +W +G +C+
Sbjct: 26 VAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCE 85
Query: 208 LSEATRDISIGVSVFTLTALSAERYCAIVNPIR 240
L + + + S+ TL ++ +RY AI +P R
Sbjct: 86 LWTSLDVLCVTASIETLCVIAIDRYLAITSPFR 118
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Query: 148 VLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHICK 207
V GN ++ A+ + +++V N +I SLA DL++ + VPF + ++ W +G C+
Sbjct: 24 VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAACILMKMWTFGNFWCE 83
Query: 208 LSEATRDISIGVSVFTLTALSAERYCAIVNPIR-SHISSKPLTIVTAFAIWVLA 260
+ + + S+ TL ++ +RY AI +P + + +K V +W+++
Sbjct: 84 FWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVS 137
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Query: 148 VLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHICK 207
V GN ++ A+ + +++V N +I SLA DL++ + VPF + ++ W +G C+
Sbjct: 25 VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCE 84
Query: 208 LSEATRDISIGVSVFTLTALSAERYCAIVNPIR-SHISSKPLTIVTAFAIWVLA 260
+ + + S+ TL ++ +RY AI +P + + +K V +W+++
Sbjct: 85 FWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVS 138
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Query: 148 VLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHICK 207
V GN ++ A+ + +++V N +I SLA DL++ + VPF + ++ W +G C+
Sbjct: 48 VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCE 107
Query: 208 LSEATRDISIGVSVFTLTALSAERYCAIVNPIR-SHISSKPLTIVTAFAIWVLA 260
+ + + S+ TL ++ +RY AI +P + + +K V +W+++
Sbjct: 108 FWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVS 161
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Query: 148 VLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHICK 207
V GN ++ A+ + +++V N +I SLA DL++ + VPF + ++ W +G C+
Sbjct: 49 VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCE 108
Query: 208 LSEATRDISIGVSVFTLTALSAERYCAIVNPIR-SHISSKPLTIVTAFAIWVLA 260
+ + + S+ TL ++ +RY AI +P + + +K V +W+++
Sbjct: 109 FWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVS 162
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Query: 148 VLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHICK 207
V GN ++ A+ + +++V N +I SLA DL++ + VPF + ++ W +G C+
Sbjct: 56 VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCE 115
Query: 208 LSEATRDISIGVSVFTLTALSAERYCAIVNPIR-SHISSKPLTIVTAFAIWVLA 260
+ + + S+ TL ++ +RY AI +P + + +K V +W+++
Sbjct: 116 FWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVS 169
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Query: 148 VLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHICK 207
V GN ++ A+ + +++V N +I SLA DL++ + VPF + ++ W +G C+
Sbjct: 55 VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCE 114
Query: 208 LSEATRDISIGVSVFTLTALSAERYCAIVNPIR-SHISSKPLTIVTAFAIWVLA 260
+ + + S+ TL ++ +RY AI +P + + +K V +W+++
Sbjct: 115 FWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVS 168
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Query: 148 VLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHICK 207
V GN ++ A+ + +++V N +I SLA DL++ + VPF + ++W +G C+
Sbjct: 197 VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCE 256
Query: 208 LSEATRDISIGVSVFTLTALSAERYCAIVNPIR-SHISSKPLTIVTAFAIWVLA 260
+ + + S+ TL ++ +RY AI +P + + +K V +W+++
Sbjct: 257 FWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVS 310
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Query: 148 VLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHICK 207
V GN ++ A+ + +++V N +I SLA DL++ + VPF + ++W +G C+
Sbjct: 20 VFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCE 79
Query: 208 LSEATRDISIGVSVFTLTALSAERYCAIVNPIRSH-ISSKPLTIVTAFAIWVLA 260
+ + + S+ TL ++ +RY AI +P + + +K V +W+++
Sbjct: 80 FWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVS 133
>pdb|3VW7|A Chain A, Crystal Structure Of Human Protease-Activated Receptor 1
(Par1) Bound With Antagonist Vorapaxar At 2.2 Angstrom
Length = 484
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 63/127 (49%), Gaps = 9/127 (7%)
Query: 143 ELPFGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLY-TLESWPY 201
LP ++ +++F ++ Y+L LA D+L + +PF + Y + W +
Sbjct: 34 SLPLNIMA----IVVFILKMKVKKPAVVYMLHLATADVL-FVSVLPFKISYYFSGSDWQF 88
Query: 202 GPHICKLSEATRDISIGVSVFTLTALSAERYCAIVNPIRSHISSKPL--TIVTAFAIWVL 259
G +C+ A ++ S+ +T +S +R+ A+V P++S +S + L T AIW L
Sbjct: 89 GSELCRFVTAAFYCNMYASILLMTVISIDRFLAVVYPMQS-LSWRTLGRASFTCLAIWAL 147
Query: 260 AIILALP 266
AI +P
Sbjct: 148 AIAGVVP 154
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 61/136 (44%), Gaps = 2/136 (1%)
Query: 149 LGNGTLVLIFAR-HKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHICK 207
+G LVL R + + +V N YI+SL++ DL+V +P + W G +C
Sbjct: 23 VGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRPLCL 82
Query: 208 LSEATRDISIGVSVFTLTALSAERYCAIVNPIRS-HISSKPLTIVTAFAIWVLAIILALP 266
+ ++ S+F++ L +RY ++ P+R +K T W L+ + +P
Sbjct: 83 FWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLSFLWVIP 142
Query: 267 SALFSHVQPATTASND 282
++H T+ +
Sbjct: 143 ILGWNHFMQQTSVRRE 158
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 5/124 (4%)
Query: 148 VLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTL-YTLESWPYGPHIC 206
V GNG + + + + +++ N ++SLA+ DLLV +P+ L T W + C
Sbjct: 53 VFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICC 112
Query: 207 KLSEATRDISIGVSVFTLTALSAERYCAIVNPIR----SHISSKPLTIVTAFAIWVLAII 262
+ + S++ L A+S +RY A+V P+ + SS + A+WVLA
Sbjct: 113 DVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFA 172
Query: 263 LALP 266
++ P
Sbjct: 173 VSCP 176
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 94/200 (47%), Gaps = 17/200 (8%)
Query: 157 IFARHKNMRSVPNTYILSLALGDL-LVIICGVPFTSTLYTLESWPYGPHICKLSEATRDI 215
+F + K++++ N +I++LA D ++ G P + L+ W +G CK+ I
Sbjct: 57 LFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGI 116
Query: 216 SIGVSVFTLTALSAERYCAIVNPIRSHISSKPLTIVTAFAIWVLAIILALPSALFSHVQP 275
+S+ T+ +S +RY I P+ + SK ++ AF ++ I + L S L++ + P
Sbjct: 117 FGFMSIMTMAMISIDRYNVIGRPMAA---SKKMSHRRAF---IMIIFVWLWSVLWA-IGP 169
Query: 276 ATTASNDTI--YFCS-PFPIEYGQQYKQTVVLCKFLAYYLGPLCVI-ACFYILMARHLEL 331
T+ C+ F ++ +LC F+ + GP+ +I C++ ++ +
Sbjct: 170 IFGWGAYTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYF-----NIVM 224
Query: 332 STRNMPGELLGQSSQSRARK 351
S N E+ + + A++
Sbjct: 225 SVSNHEKEMAAMAKRLNAKE 244
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 147 GVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHIC 206
+LGN + + N+++V N +++SLA D+LV + +PF T+ T + H C
Sbjct: 20 AILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADILVGVLAIPFAITIST--GFCAACHGC 77
Query: 207 KLSEATRDISIGVSVFTLTALSAERYCAIVNPIR 240
+ S+F+L A++ +RY AI P+R
Sbjct: 78 LFIACFVLVLAQSSIFSLLAIAIDRYIAIAIPLR 111
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 94/200 (47%), Gaps = 17/200 (8%)
Query: 157 IFARHKNMRSVPNTYILSLALGDL-LVIICGVPFTSTLYTLESWPYGPHICKLSEATRDI 215
+F + K++++ N +I++LA D ++ G P + L+ W +G CK+ I
Sbjct: 58 LFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFAACKVYGFIGGI 117
Query: 216 SIGVSVFTLTALSAERYCAIVNPIRSHISSKPLTIVTAFAIWVLAIILALPSALFSHVQP 275
+S+ T+ +S +RY I P+ + SK ++ AF ++ I + L S L++ + P
Sbjct: 118 FGFMSIMTMAMISIDRYNVIGRPMAA---SKKMSHRRAF---IMIIFVWLWSVLWA-IGP 170
Query: 276 ATTASNDTI--YFCS-PFPIEYGQQYKQTVVLCKFLAYYLGPLCVI-ACFYILMARHLEL 331
T+ C+ F ++ +LC F+ + GP+ +I C++ ++ +
Sbjct: 171 IFGWGAYTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYF-----NIVM 225
Query: 332 STRNMPGELLGQSSQSRARK 351
S N E+ + + A++
Sbjct: 226 SVSNHEKEMAAMAKRLNAKE 245
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
Length = 296
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 2/133 (1%)
Query: 148 VLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHICK 207
+LGN ++L+ + RSV + Y+L+LAL DLL + + ++ + W +G +CK
Sbjct: 26 LLGNSLVMLVILYSRVGRSVTDVYLLNLALADLLFALTLPIWAAS--KVNGWIFGTFLCK 83
Query: 208 LSEATRDISIGVSVFTLTALSAERYCAIVNPIRSHISSKPLTIVTAFAIWVLAIILALPS 267
+ ++++ + L +S +RY AIV+ R+ + L W L++ L+LP
Sbjct: 84 VVSLLKEVNFYSGILLLACISVDRYLAIVHATRTLTQKRHLVKFVCLGCWGLSMNLSLPF 143
Query: 268 ALFSHVQPATTAS 280
LF +S
Sbjct: 144 FLFRQAYHPNNSS 156
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 147 GVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHIC 206
+LGN + + N+++V N +++SLA D+ V + +PF T+ T + H C
Sbjct: 20 AILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIST--GFCAACHGC 77
Query: 207 KLSEATRDISIGVSVFTLTALSAERYCAIVNPIR 240
+ S+F+L A++ +RY AI P+R
Sbjct: 78 LFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLR 111
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 146 FGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHI 205
+LGN + + N+++V N +++SLA D+ V + +PF T+ T + H
Sbjct: 44 LAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIST--GFCAACHG 101
Query: 206 CKLSEATRDISIGVSVFTLTALSAERYCAIVNPIR 240
C + S+F+L A++ +RY AI P+R
Sbjct: 102 CLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLR 136
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 146 FGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHI 205
+LGN + + N+++V N +++SLA D+ V + +PF T+ T + H
Sbjct: 34 LAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIST--GFCAACHG 91
Query: 206 CKLSEATRDISIGVSVFTLTALSAERYCAIVNPIR 240
C + S+F+L A++ +RY AI P+R
Sbjct: 92 CLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLR 126
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 147 GVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHIC 206
+LGN + + N+++V N +++S A D+LV + +PF + T + H C
Sbjct: 20 AILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFAIAIST--GFCAACHGC 77
Query: 207 KLSEATRDISIGVSVFTLTALSAERYCAIVNPIR 240
+ S+F+L A++ +RY AI P+R
Sbjct: 78 LFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLR 111
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
Complex With Neurotensin (8-13)
Length = 510
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 6/126 (4%)
Query: 147 GVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICG-----VPFTSTLYTLESWPY 201
G +GN + AR K+++S+ +T L L ++ V + ++ W +
Sbjct: 46 GTVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAF 105
Query: 202 GPHICKLSEATRDISIGVSVFTLTALSAERYCAIVNPIRSH-ISSKPLTIVTAFAIWVLA 260
G C+ RD + + +LS RY AI +P ++ + S+ T AIW+ +
Sbjct: 106 GDAGCRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIWLAS 165
Query: 261 IILALP 266
+LA+P
Sbjct: 166 ALLAIP 171
>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
3.35a
pdb|3V2Y|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
2.80a
Length = 520
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 5/121 (4%)
Query: 146 FGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYG--P 203
F +L N ++L + K +I +LAL DLL GV +T+ L + Y P
Sbjct: 76 FIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLL---AGVAYTANLLLSGATTYKLTP 132
Query: 204 HICKLSEATRDISIGVSVFTLTALSAERYCAIVNPIRSHISSKPLTIVTAFAIWVLAIIL 263
L E + +++ SVF+L A++ ERY ++ + S+ + A WV+++IL
Sbjct: 133 AQWFLREGSMFVALSASVFSLLAIAIERYITMLKMKLHNGSNNFRLFLLISACWVISLIL 192
Query: 264 A 264
Sbjct: 193 G 193
>pdb|3U28|A Chain A, Crystal Structure Of A Cbf5-Nop10-Gar1 Complex From
Saccharomyces Cerevisiae
pdb|3UAI|A Chain A, Structure Of The Shq1-Cbf5-Nop10-Gar1 Complex From
Saccharomyces Cerevisiae
Length = 400
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 440 ELVVIHISQTQVVNLSYPSVVFGMSLRSLIIELDTYFSYRQIGDTSRAQCQMVLENMKLV 499
E + + I+Q V+L+ S++ I+E D Y +G ++ + QM + KL
Sbjct: 311 EAIAVAIAQMSTVDLASCDHGVVASVKRCIMERDLYPRRWGLGPVAQKKKQMKADG-KLD 369
Query: 500 KYGRKRHFEKGETKKQY 516
KYGR + KK+Y
Sbjct: 370 KYGRVNENTPEQWKKEY 386
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,956,573
Number of Sequences: 62578
Number of extensions: 498767
Number of successful extensions: 1046
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 991
Number of HSP's gapped (non-prelim): 42
length of query: 522
length of database: 14,973,337
effective HSP length: 103
effective length of query: 419
effective length of database: 8,527,803
effective search space: 3573149457
effective search space used: 3573149457
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)