Query psy17390
Match_columns 522
No_of_seqs 369 out of 2524
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 21:15:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17390.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17390hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4219|consensus 100.0 1E-43 2.3E-48 350.7 19.7 298 131-435 33-336 (423)
2 PHA03234 DNA packaging protein 100.0 1.3E-40 2.9E-45 339.8 28.0 284 131-436 30-322 (338)
3 PHA02834 chemokine receptor-li 100.0 1.6E-38 3.5E-43 323.6 24.2 277 132-434 27-309 (323)
4 PHA03235 DNA packaging protein 100.0 2.5E-37 5.5E-42 322.7 29.4 286 131-432 30-325 (409)
5 PHA02638 CC chemokine receptor 100.0 2.5E-36 5.3E-41 316.5 27.8 282 133-431 98-398 (417)
6 KOG4220|consensus 100.0 1.9E-37 4.2E-42 305.1 6.6 193 134-333 31-224 (503)
7 PHA03087 G protein-coupled che 100.0 1E-33 2.3E-38 289.9 26.4 273 132-424 39-317 (335)
8 PF00001 7tm_1: 7 transmembran 100.0 2.5E-33 5.3E-38 272.5 20.2 255 150-413 1-257 (257)
9 KOG2087|consensus 100.0 4.2E-30 9.1E-35 252.0 3.8 285 123-431 14-307 (363)
10 PF10320 7TM_GPCR_Srsx: Serpen 99.8 1.7E-18 3.8E-23 170.4 13.0 251 145-424 2-253 (257)
11 PF10324 7TM_GPCR_Srw: Serpent 99.8 3.2E-17 7E-22 166.7 19.4 283 142-434 5-317 (318)
12 PF10328 7TM_GPCR_Srx: Serpent 99.6 2.2E-14 4.9E-19 142.8 20.1 261 142-419 2-264 (274)
13 PF10323 7TM_GPCR_Srv: Serpent 99.5 1.1E-12 2.4E-17 131.0 16.5 269 144-434 5-283 (283)
14 PF05296 TAS2R: Mammalian tast 99.4 5E-11 1.1E-15 120.1 23.8 285 134-434 7-301 (303)
15 PF05462 Dicty_CAR: Slime mold 99.3 1E-09 2.3E-14 109.7 22.9 129 136-271 9-137 (303)
16 PF10321 7TM_GPCR_Srt: Serpent 99.0 1.9E-08 4.1E-13 101.2 19.2 266 134-434 33-307 (313)
17 PF11710 Git3: G protein-coupl 98.9 6.4E-08 1.4E-12 91.4 16.3 178 145-335 12-200 (201)
18 PF10292 7TM_GPCR_Srab: Serpen 98.8 4.1E-06 8.8E-11 85.5 26.9 232 135-379 18-256 (324)
19 PF10317 7TM_GPCR_Srd: Serpent 98.8 1.7E-06 3.7E-11 86.9 22.3 259 138-413 3-279 (292)
20 PF03402 V1R: Vomeronasal orga 98.7 4.3E-08 9.3E-13 95.7 8.9 237 163-412 6-251 (265)
21 PF10316 7TM_GPCR_Srbc: Serpen 98.4 5E-05 1.1E-09 75.0 20.4 114 134-247 6-122 (273)
22 PF02101 Ocular_alb: Ocular al 98.3 4.6E-05 9.9E-10 76.6 18.7 184 169-378 68-266 (405)
23 PF10327 7TM_GPCR_Sri: Serpent 98.3 0.00013 2.8E-09 73.7 21.1 265 135-412 10-291 (303)
24 PF10326 7TM_GPCR_Str: Serpent 98.2 7.4E-07 1.6E-11 90.2 4.2 261 141-413 6-295 (307)
25 PF02118 Srg: Srg family chemo 98.2 8.6E-05 1.9E-09 73.7 18.1 208 141-367 5-223 (275)
26 PF02117 7TM_GPCR_Sra: Serpent 98.1 0.00039 8.4E-09 71.0 20.1 259 134-408 21-288 (328)
27 PF04789 DUF621: Protein of un 98.0 0.0014 3.1E-08 63.1 21.1 261 150-436 31-296 (305)
28 KOG4193|consensus 98.0 0.00039 8.5E-09 75.9 19.7 257 136-433 322-580 (610)
29 PF00002 7tm_2: 7 transmembran 98.0 2.3E-06 5E-11 83.4 1.9 130 138-271 5-134 (242)
30 PF10318 7TM_GPCR_Srh: Serpent 98.0 0.00058 1.3E-08 68.9 19.3 279 136-433 6-301 (302)
31 PF03125 Sre: C. elegans Sre G 97.9 0.0075 1.6E-07 62.6 25.7 117 133-249 26-166 (365)
32 PF10319 7TM_GPCR_Srj: Serpent 97.2 0.1 2.2E-06 52.2 22.2 102 141-242 12-124 (310)
33 KOG4564|consensus 96.9 0.12 2.6E-06 54.6 20.2 206 138-367 149-366 (473)
34 PF02076 STE3: Pheromone A rec 96.5 0.12 2.7E-06 51.4 16.5 120 146-271 3-126 (283)
35 PF10322 7TM_GPCR_Sru: Serpent 96.5 0.19 4.2E-06 50.6 17.6 148 203-365 100-257 (307)
36 PF01534 Frizzled: Frizzled/Sm 96.3 1.4 3E-05 44.9 22.4 146 139-290 14-172 (328)
37 PF06681 DUF1182: Protein of u 94.2 0.55 1.2E-05 43.7 10.4 94 141-240 48-151 (226)
38 PF03383 Serpentine_r_xa: Caen 92.0 0.14 3E-06 45.8 3.1 80 210-289 48-128 (153)
39 PF11970 Git3_C: G protein-cou 89.1 1.3 2.7E-05 34.9 5.8 64 346-413 3-67 (76)
40 PF02175 7TM_GPCR_Srb: Serpent 89.1 22 0.00048 34.2 18.5 43 201-243 80-122 (236)
41 PF06454 DUF1084: Protein of u 85.9 40 0.00086 33.6 20.9 53 129-184 24-77 (281)
42 PF13853 7tm_4: Olfactory rece 72.3 0.55 1.2E-05 41.8 -2.2 82 250-333 4-88 (144)
43 PF05296 TAS2R: Mammalian tast 71.9 64 0.0014 32.4 12.4 63 305-367 187-249 (303)
44 PF10325 7TM_GPCR_Srz: Serpent 50.4 2.4E+02 0.0053 27.4 12.0 111 210-334 86-198 (267)
45 PF00003 7tm_3: 7 transmembran 49.6 1E+02 0.0022 29.4 8.9 25 202-226 52-76 (238)
46 PHA03087 G protein-coupled che 43.1 1.7E+02 0.0037 29.4 9.9 38 402-439 291-328 (335)
47 PF11683 DUF3278: Protein of u 37.3 2.7E+02 0.0059 24.0 9.0 42 229-270 11-54 (129)
48 KOG4289|consensus 30.5 3.9E+02 0.0084 32.9 10.5 76 153-237 2182-2257(2531)
49 PHA03235 DNA packaging protein 29.6 4E+02 0.0086 28.0 10.2 35 401-435 290-324 (409)
50 KOG1056|consensus 28.9 6.4E+02 0.014 29.4 11.9 42 136-177 561-609 (878)
51 PF09882 DUF2109: Predicted me 23.3 1.5E+02 0.0033 23.2 4.1 49 144-192 4-52 (78)
52 KOG4220|consensus 22.1 2.1E+02 0.0046 30.1 6.1 27 348-375 142-168 (503)
53 PF01102 Glycophorin_A: Glycop 21.8 1.1E+02 0.0023 26.5 3.3 21 146-166 75-95 (122)
54 PHA02834 chemokine receptor-li 20.7 52 0.0011 33.3 1.4 20 417-436 288-307 (323)
55 PF10192 GpcrRhopsn4: Rhodopsi 20.3 8E+02 0.017 23.8 21.7 25 349-375 204-228 (257)
No 1
>KOG4219|consensus
Probab=100.00 E-value=1e-43 Score=350.66 Aligned_cols=298 Identities=21% Similarity=0.264 Sum_probs=247.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHhHHHHHHHHHHHhcchhhhhhhhcccccccccccchhhh
Q psy17390 131 RKLLKLTLTQFSELPFGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHICKLSE 210 (522)
Q Consensus 131 ~~~~~~~ii~~ii~llgi~gN~lVi~vi~~~r~lr~~~~~li~nLAvaDll~~l~~lp~~i~~~~~~~~~~~~~~C~~~~ 210 (522)
....++.++++++.+++++||++|+|++..+|++|+.+|+|++|||+||++++++..++.........|.+|...|++..
T Consensus 33 ~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G~f~C~f~n 112 (423)
T KOG4219|consen 33 WQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFGSFYCRFVN 112 (423)
T ss_pred HHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccceeeecc
Confidence 45678899999999999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhccccccccCCchhhhhhHHHHHHHHHHHHHHHhhhccccccccCCCceEEecCC
Q psy17390 211 ATRDISIGVSVFTLTALSAERYCAIVNPIRSHISSKPLTIVTAFAIWVLAIILALPSALFSHVQPATTASNDTIYFCSPF 290 (522)
Q Consensus 211 ~l~~~~~~~Si~~L~~ISidRy~aI~~Pl~y~~~t~r~~~~~i~~iWl~s~l~alp~~~~~~~~~~~~~~~~~~~~C~~~ 290 (522)
|+..+...+|+++|++||+|||.||.||++.+ .++|.+.++|+++|++|+++++|..+..........++.....|...
T Consensus 113 f~~itav~vSVfTlvAiA~DRy~AIi~Pl~~r-~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~d~~~~~~~~~~ 191 (423)
T KOG4219|consen 113 FFPITAVFVSVFTLVAIAIDRYMAIIHPLQPR-PSRRSSKIIILLIWALALLLALPQLLYSSVEELYLYDGESRVVCVTA 191 (423)
T ss_pred ccchhhhhHhHHHHHHHHHHHHHHHhhhcccC-CCCcceeehhHHHHHHHHHHhccceeeeeeEEeeccCCcceEEEEEe
Confidence 99999999999999999999999999999987 89999999999999999999999999888777665445555667643
Q ss_pred Cccc---chhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccCcchhHHHHHHHHHHHHHHHHHH
Q psy17390 291 PIEY---GQQYK---QTVVLCKFLAYYLGPLCVIACFYILMARHLELSTRNMPGELLGQSSQSRARKKVAKMVSVLASST 364 (522)
Q Consensus 291 ~~~~---~~~~~---~~y~~~~~i~~~~iPliiii~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~k~~k~l~iiv~~f 364 (522)
+.+. ..... +.|...+.++.+++|++++...|.+|.+++|+++. ...++.++.++.++++|+.||+++|+++|
T Consensus 192 ~pe~~~~~~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~-~gd~~d~~~~~~kak~K~vkmliiVV~~F 270 (423)
T KOG4219|consen 192 WPEHVCPTENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRI-PGDQQDRKHEQLKAKKKVVKMLIIVVVIF 270 (423)
T ss_pred cccccCCcchhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccC-ccchhchhhHHHHHHHHHHHHHHHHHHHH
Confidence 2221 11111 23777777888999999999999999999998763 22333345567789999999999999999
Q ss_pred HHhhhHHHHHHHHHhhcccCCcchhhHHHHHHHHHHHhhhhccCChhhhHHhHHHHhHHHHHHhhhhcCcc
Q psy17390 365 LASTLSPYTSLVVCLGNISTGICSVVVHLAVNYNMMSPWCHSIVPPVEDSTLALALGFHQIQSFTKLSSVY 435 (522)
Q Consensus 365 ~lc~w~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~lNPiIY~~iy~~~~~~~~~~frk~~~~~ 435 (522)
.+| |+||+++.++....+.-.........+....|++..|+|.||+||.+++ .+++.+|++.||+.
T Consensus 271 aic-WlPyh~y~il~~~~~~i~~~k~i~~vyl~~~WLaMSst~yNPiIY~~lN----~Rfr~gf~~~fr~c 336 (423)
T KOG4219|consen 271 AIC-WLPYHIYFILNATNPEINRKKFIQQVYLAIYWLAMSSTCYNPIIYCFLN----KRFRGGFRRAFRWC 336 (423)
T ss_pred HHh-ccChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccHhhhhhH----HHHHHHHhhhhhee
Confidence 999 9999999988754433333444555667788999999999999775544 55556666666544
No 2
>PHA03234 DNA packaging protein UL33; Provisional
Probab=100.00 E-value=1.3e-40 Score=339.80 Aligned_cols=284 Identities=13% Similarity=0.169 Sum_probs=214.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhh--hccCCCCchhHHhHHHHHHHHHHHhcchhhhhhhhcccccccccccchh
Q psy17390 131 RKLLKLTLTQFSELPFGVLGNGTLVLIFA--RHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHICKL 208 (522)
Q Consensus 131 ~~~~~~~ii~~ii~llgi~gN~lVi~vi~--~~r~lr~~~~~li~nLAvaDll~~l~~lp~~i~~~~~~~~~~~~~~C~~ 208 (522)
....+++++|.+++++|++||++|++++. +++++|+++|+|++|||+||+++++ .+|+.+... .++|++|+.+|++
T Consensus 30 ~~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l-~lp~~~~~~-~~~w~fG~~lCk~ 107 (338)
T PHA03234 30 KAQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHML-CVFFLTLNR-EALFNFNQAFCQC 107 (338)
T ss_pred HHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH-HHHHHHHHH-hCCccCchhHHHH
Confidence 35667899999999999999999999654 5566789999999999999999987 566655433 4579999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHhhccccccccCCchhhhhhHHHHHHHHHHHHHHHhhhccccccccCCCceEEec
Q psy17390 209 SEATRDISIGVSVFTLTALSAERYCAIVNPIRSHISSKPLTIVTAFAIWVLAIILALPSALFSHVQPATTASNDTIYFCS 288 (522)
Q Consensus 209 ~~~l~~~~~~~Si~~L~~ISidRy~aI~~Pl~y~~~t~r~~~~~i~~iWl~s~l~alp~~~~~~~~~~~~~~~~~~~~C~ 288 (522)
.+++..++.++|+++|++||+|||+||++|.+++. +++++...++++|+.|++.++|.++....... ......|.
T Consensus 108 ~~~~~~~~~~~Si~~L~~ISiDRY~aIv~p~~~~~-~~~~~~~~i~~~Wi~s~l~~~P~l~~~~~~~~----~~~~~~C~ 182 (338)
T PHA03234 108 VLFIYHASCSYSICMLAIIATIRYKTLHRRKKNDK-KNNHIGRNIGILFLASAMCAIPAALFVKTEGK----KGNYGKCN 182 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHeeeechhhhhh-hhhhHHHHHHHHHHHHHHHHhhHhHeeeeeec----CCCCCcCc
Confidence 99999999999999999999999999999988653 33444456666799999999999865443221 11124687
Q ss_pred CCCcccchhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccCcchhHHHHHHHHHHHHHHHHHHHH
Q psy17390 289 PFPIEYGQQYKQ--TVVLCKFLAYYLGPLCVIACFYILMARHLELSTRNMPGELLGQSSQSRARKKVAKMVSVLASSTLA 366 (522)
Q Consensus 289 ~~~~~~~~~~~~--~y~~~~~i~~~~iPliiii~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~k~~k~l~iiv~~f~l 366 (522)
..+... ..+.. .+.....++++++|+++|++||.+|.+++++++ .++++|++|++++++++|++
T Consensus 183 ~~~~~~-~~~~~~~~~~~~~~~~~f~iPl~im~~cY~~I~~~L~~~~-------------~~~~~k~~k~i~~vv~vF~i 248 (338)
T PHA03234 183 IHISSK-KAYDLFIAIKIVFCFIWGIFPTMIFSFFYVIFCKALHALT-------------EKKHKKTLFFIRILILSFLC 248 (338)
T ss_pred ccCCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------------hhhhhhhhhHHHHHHHHHHH
Confidence 544321 11111 111223344579999999999999999997631 24567899999999999999
Q ss_pred hhhHHHHHHHHHhhcc---cCCcc--hhhHHHHHHHHHHHhhhhccCChhhhHHhHHHHhHHHHHHhhhhcCccc
Q psy17390 367 STLSPYTSLVVCLGNI---STGIC--SVVVHLAVNYNMMSPWCHSIVPPVEDSTLALALGFHQIQSFTKLSSVYT 436 (522)
Q Consensus 367 c~w~P~~i~~l~~~~~---~~~~~--~~~~~~~~~~~~~l~~~ns~lNPiIY~~iy~~~~~~~~~~frk~~~~~~ 436 (522)
| |+||++..+..... ....+ ......+..+...++++|||+||+||.++...||..+++.++|..+|..
T Consensus 249 C-WlPy~iv~l~~~~~~~~~~~~c~~~~~~~~~~~v~~~La~~nsclNPiIY~f~~~~FR~~~~~~~~~~~~~~~ 322 (338)
T PHA03234 249 I-QIPNIAILICEIAFLYIANNSCFGLAQREILQIIIRLMPEIHCFSNPLVYAFTGGDFRLRFTACFQDFFKCNL 322 (338)
T ss_pred H-HhHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHhhhhh
Confidence 9 99999987654221 11112 1234455678889999999999999988888888888777777666553
No 3
>PHA02834 chemokine receptor-like protein; Provisional
Probab=100.00 E-value=1.6e-38 Score=323.64 Aligned_cols=277 Identities=17% Similarity=0.297 Sum_probs=206.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHhHHHHHHHHHHHhcchhhhhhhhcccccccccccchhhhh
Q psy17390 132 KLLKLTLTQFSELPFGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHICKLSEA 211 (522)
Q Consensus 132 ~~~~~~ii~~ii~llgi~gN~lVi~vi~~~r~lr~~~~~li~nLAvaDll~~l~~lp~~i~~~~~~~~~~~~~~C~~~~~ 211 (522)
...++.+++.+++++|++||+++++++.++++ +++.|+|++|||+||++. ++.+|+.+.... ++|.+|+..|++.++
T Consensus 27 ~~~~~~~~~~li~v~~~~gN~lVi~vi~~~~~-~~~~n~~i~nLAiaDll~-~~~lP~~i~~~~-~~w~~g~~~C~~~~~ 103 (323)
T PHA02834 27 VNYFVIVFYILLFIFGLIGNVLVIAVLIVKRF-MFVVDVYLFNIAMSDLML-VFSFPFIIHNDL-NEWIFGEFMCKLVLG 103 (323)
T ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHHHHhccc-cchhhhhhHHHHHHHHHH-HHHHHHHHHHHc-CCcCCcchHHHhHHH
Confidence 34567889999999999999999999887655 467899999999999987 447888765443 579999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhccccccccCCchhhhhhHHHHHHHHHHHHHHHhhhccccccccCCCceEEecCCC
Q psy17390 212 TRDISIGVSVFTLTALSAERYCAIVNPIRSHISSKPLTIVTAFAIWVLAIILALPSALFSHVQPATTASNDTIYFCSPFP 291 (522)
Q Consensus 212 l~~~~~~~Si~~L~~ISidRy~aI~~Pl~y~~~t~r~~~~~i~~iWl~s~l~alp~~~~~~~~~~~~~~~~~~~~C~~~~ 291 (522)
+...+..+|++++++||+|||++|++|++++..+.+++..+++++|++|++.++|++++..... ......|....
T Consensus 104 ~~~~~~~~Si~tL~~IsidRY~aI~~P~~~~~~~~~~~~~~i~~iWi~s~l~~~P~~~~~~~~~-----~~~~~~C~~~~ 178 (323)
T PHA02834 104 VYFVGFFSNMFFVTLISIDRYILVVNATKIKNKSISLSVLLSVAAWVCSVILSMPAMVLYYVDN-----TDNLKQCIFND 178 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeCchhccCCccchHHHHHHHHHHHHHHHHhhHHHHHHhcc-----CCCceEEeccC
Confidence 9999999999999999999999999999876556677778889999999999999887653321 11224686322
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccCcchhHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy17390 292 IEYGQQYKQTVVLCKFLAYYLGPLCVIACFYILMARHLELSTRNMPGELLGQSSQSRARKKVAKMVSVLASSTLASTLSP 371 (522)
Q Consensus 292 ~~~~~~~~~~y~~~~~i~~~~iPliiii~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~k~~k~l~iiv~~f~lc~w~P 371 (522)
...+..+...+.....++.+++|+++|+++|.+|++++|++++ ++++|.+|++++++++|++| |+|
T Consensus 179 ~~~~~~~~~~~~~~~~i~~f~iPl~ii~~~Y~~I~~~l~~~~~-------------~~~~k~~k~~~~vv~~F~ic-WlP 244 (323)
T PHA02834 179 YHENFSWSAFFNFEINIFGIVIPLIILIYCYSKILYTLKNCKN-------------KNKTRSIKIILTVVTFTVVF-WVP 244 (323)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------------cccceEEeehhHHHHHHHHH-Hhh
Confidence 2212222233444455778999999999999999999987532 12457889999999999998 999
Q ss_pred HHHHHHHhhcccCC----cch--hhHHHHHHHHHHHhhhhccCChhhhHHhHHHHhHHHHHHhhhhcCc
Q psy17390 372 YTSLVVCLGNISTG----ICS--VVVHLAVNYNMMSPWCHSIVPPVEDSTLALALGFHQIQSFTKLSSV 434 (522)
Q Consensus 372 ~~i~~l~~~~~~~~----~~~--~~~~~~~~~~~~l~~~ns~lNPiIY~~iy~~~~~~~~~~frk~~~~ 434 (522)
++++.++......+ .+. ........+..+++++|||+||+||.+.+ ..+|++++|.+++
T Consensus 245 y~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~iNPiIY~~~~----~~fR~~~~~~~~~ 309 (323)
T PHA02834 245 FNIVLFINSLQSVGLIDIGCYHFKKIVYSIDIAELISFVHCCVNPIIYAFVG----KNFKKVFKNMFCR 309 (323)
T ss_pred HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHhhccccHHHHHHhc----HHHHHHHHHHHHh
Confidence 99988765332211 111 11222345778899999999999665554 4455555665543
No 4
>PHA03235 DNA packaging protein UL33; Provisional
Probab=100.00 E-value=2.5e-37 Score=322.67 Aligned_cols=286 Identities=17% Similarity=0.199 Sum_probs=210.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccCC--CCchhHHhHHHHHHHHHHHhcchhhhhhhhcccccccccccchh
Q psy17390 131 RKLLKLTLTQFSELPFGVLGNGTLVLIFARHKNM--RSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHICKL 208 (522)
Q Consensus 131 ~~~~~~~ii~~ii~llgi~gN~lVi~vi~~~r~l--r~~~~~li~nLAvaDll~~l~~lp~~i~~~~~~~~~~~~~~C~~ 208 (522)
....+..+++.+++++|++||++|++++.+++++ ++.+++|++|||++|++.. +.+|+.+... ...|..|...|++
T Consensus 30 ~~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~l-~~lP~~i~~~-~~~~~~g~~~Ck~ 107 (409)
T PHA03235 30 AARTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLTV-FVLPFIMLSN-QGLLSGSVAGCKF 107 (409)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHHH-HHHHHHHHhc-CccccCCCCeehh
Confidence 3456788999999999999999999986543333 3567899999999999874 4788776432 2233445789999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHhhccccccccCCchhhhhhHHHHHHHHHHHHHHHhhhcccccc--ccCCCceEE
Q psy17390 209 SEATRDISIGVSVFTLTALSAERYCAIVNPIRSHISSKPLTIVTAFAIWVLAIILALPSALFSHVQPAT--TASNDTIYF 286 (522)
Q Consensus 209 ~~~l~~~~~~~Si~~L~~ISidRy~aI~~Pl~y~~~t~r~~~~~i~~iWl~s~l~alp~~~~~~~~~~~--~~~~~~~~~ 286 (522)
.+++..++..+|++++++||+|||++|++|.+++..+++++..+++++|++|+++++|++++....... .........
T Consensus 108 ~~~l~~~~~~~Si~tL~~ISiDRY~aI~~p~~~~~~~~~~a~~ii~~iWi~sll~s~P~~~~~~~~~~~~~~~~~~~~~~ 187 (409)
T PHA03235 108 ASLLYYASCTVGFATVALIAADRYRVIHQRTRARSSAYRSTYKILGLTWFASLICSGPAPVYTTVVAHDDVDPEAPGYET 187 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHeechhhccCcccchhhhhHHHHHHHHHHHHHHHHHHHhhhhccccCcCCCCcce
Confidence 999999999999999999999999999999876667788999999999999999999977654321111 011122356
Q ss_pred ecCCCcccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccCcchhHHHHHHHHHHHHHHHHHHH
Q psy17390 287 CSPFPIEYG-QQYKQTVVLCKFLAYYLGPLCVIACFYILMARHLELSTRNMPGELLGQSSQSRARKKVAKMVSVLASSTL 365 (522)
Q Consensus 287 C~~~~~~~~-~~~~~~y~~~~~i~~~~iPliiii~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~k~~k~l~iiv~~f~ 365 (522)
|...+.... ......|.++.+++.|++|+++|++||.+|++++|++.+ ++++|.++++++++++|+
T Consensus 188 C~~~~~~~~~~~~~~~y~i~l~i~~f~iPl~im~~~Y~~I~~~l~~~~~-------------~~~~k~~~~v~iivv~F~ 254 (409)
T PHA03235 188 CVIYFRADQVKTVLSTFKVLLTLVWGIAPVVMMTWFYTFFYRTLKRASY-------------KKRSRTLTFVCILLLSFL 254 (409)
T ss_pred eeEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------------hcchhhhhhHHHHHHHHH
Confidence 865332211 112234566667778999999999999999999987532 234577888888888999
Q ss_pred HhhhHHHHHHHHHhhcccC---Ccc--hhhHHHHHHHHHHHhhhhccCChhhhHHhHHHHhHHHHHHhhhhc
Q psy17390 366 ASTLSPYTSLVVCLGNIST---GIC--SVVVHLAVNYNMMSPWCHSIVPPVEDSTLALALGFHQIQSFTKLS 432 (522)
Q Consensus 366 lc~w~P~~i~~l~~~~~~~---~~~--~~~~~~~~~~~~~l~~~ns~lNPiIY~~iy~~~~~~~~~~frk~~ 432 (522)
+| |+||.++.++...... ..+ .........+..+++++|||+||+||.+++..|++.+++.+++.+
T Consensus 255 iC-WlPy~v~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~La~~ns~lNPiIY~~~~~~FRk~~~~~l~~~l 325 (409)
T PHA03235 255 CL-QTPFVAIMIFDSYATLIWPSDCEHINLRDAVSTLSRLVPNLHCLLNPILYAFLGNDFLKRFRQCFRGEL 325 (409)
T ss_pred HH-HhHHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHHHHHhHhHHHHHHhhHHHHHHHHHHHhhhh
Confidence 98 9999998776532110 111 112234456788899999999999888888777777766665543
No 5
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=100.00 E-value=2.5e-36 Score=316.51 Aligned_cols=282 Identities=19% Similarity=0.352 Sum_probs=216.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHhHHHHHHHHHHHhcchhhhhhhhcccccccccccchhhhhh
Q psy17390 133 LLKLTLTQFSELPFGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHICKLSEAT 212 (522)
Q Consensus 133 ~~~~~ii~~ii~llgi~gN~lVi~vi~~~r~lr~~~~~li~nLAvaDll~~l~~lp~~i~~~~~~~~~~~~~~C~~~~~l 212 (522)
...+.+++.+++++|++||+++++++.+ |++|+++|++++|||++|++.++ .+|+.+... .++|.+|+..|++..++
T Consensus 98 ~~~l~~~y~lvfvlgliGN~LVl~il~~-k~lrt~t~i~llnLAisDLl~~l-~lPf~i~~~-~~~W~fg~~~Ck~~~~l 174 (417)
T PHA02638 98 SEYIKIFYIIIFILGLFGNAAIIMILFC-KKIKTITDIYIFNLAISDLIFVI-DFPFIIYNE-FDQWIFGDFMCKVISAS 174 (417)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCHhHHHHHHHHHHHHHHHH-HHHHHHHHH-hccccccccchhhHHHH
Confidence 4567888999999999999999987754 78899999999999999998865 788877654 46899999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhccccccc-cCCchhhhhhHHHHHHHHHHHHHHHhhhccccccc-----cCCCceEE
Q psy17390 213 RDISIGVSVFTLTALSAERYCAIVNPIRSHI-SSKPLTIVTAFAIWVLAIILALPSALFSHVQPATT-----ASNDTIYF 286 (522)
Q Consensus 213 ~~~~~~~Si~~L~~ISidRy~aI~~Pl~y~~-~t~r~~~~~i~~iWl~s~l~alp~~~~~~~~~~~~-----~~~~~~~~ 286 (522)
...+.++|++++++|++|||+||+||+++++ .+++++..+++++|+++++.++|+++..+...... ........
T Consensus 175 ~~~~~~~Si~~L~~isiDRYlaIv~p~~~~~~~~~~~~~i~~~~iW~~s~l~slP~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (417)
T PHA02638 175 YYIGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLIITSPAYFIFEASNIIFSAQDSNETISNYQ 254 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccceecHhhhHhhHhHHHHHHHHHHHHHHHHhhccccccccccCCCCccCCe
Confidence 9999999999999999999999999999776 56677788899999999999999998765432110 01111346
Q ss_pred ecCCCcccc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccCcchhHHHHHHHHHHHHHHHHH
Q psy17390 287 CSPFPIEYG---QQYKQTVVLCKFLAYYLGPLCVIACFYILMARHLELSTRNMPGELLGQSSQSRARKKVAKMVSVLASS 363 (522)
Q Consensus 287 C~~~~~~~~---~~~~~~y~~~~~i~~~~iPliiii~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~k~~k~l~iiv~~ 363 (522)
|........ ..+...+.+...++++++|+++|++||.+|++++++.++ ++++|.+|++++++++
T Consensus 255 C~~~~~~~~~~~~~~~~~~~~~~~i~~f~lPl~vmi~cY~~I~~~L~~~~~-------------~~k~k~~rli~~ivi~ 321 (417)
T PHA02638 255 CTLIEDNEKNNISFLGRILQFEINILGMFIPIIIFAFCYIKIILKLKQLKK-------------SKKTKSIIIVSIIIIC 321 (417)
T ss_pred eeeeccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------------cccchhhhhHHHHHHH
Confidence 864322211 122233445556778999999999999999999987431 2356778999999999
Q ss_pred HHHhhhHHHHHHHHHhhcccC---------Ccch-hhHHHHHHHHHHHhhhhccCChhhhHHhHHHHhHHHHHHhhhh
Q psy17390 364 TLASTLSPYTSLVVCLGNIST---------GICS-VVVHLAVNYNMMSPWCHSIVPPVEDSTLALALGFHQIQSFTKL 431 (522)
Q Consensus 364 f~lc~w~P~~i~~l~~~~~~~---------~~~~-~~~~~~~~~~~~l~~~ns~lNPiIY~~iy~~~~~~~~~~frk~ 431 (522)
|++| |+|+.++.++...... ..|. .....+..+...++++|||+||+||.++...||+..++.|+|.
T Consensus 322 f~lc-W~Py~i~~ll~~~~~~~~~~~~~~~~~c~~~~l~~~~~vt~~la~~~sclNPiIY~f~~~~FR~~l~~~~~~~ 398 (417)
T PHA02638 322 SLIC-WIPLNIVILFATMYSFKGFNSIISEHICGFIKLGYAMMLAEAISLTHCCINPLIYTLIGENFRMHLLMIFRNI 398 (417)
T ss_pred HHHH-HhhHHHHHHHHHHHHhhccccccccccccHHHHHHHHHHHHHHHHHHHhhhHHHHHHhCHHHHHHHHHHHHHh
Confidence 9999 9999998876532211 1121 2344566778899999999999988777777777665555443
No 6
>KOG4220|consensus
Probab=100.00 E-value=1.9e-37 Score=305.06 Aligned_cols=193 Identities=21% Similarity=0.327 Sum_probs=169.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHhHHHHHHHHHHHhcchhhhhhhhcccccccccccchhhhhhh
Q psy17390 134 LKLTLTQFSELPFGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHICKLSEATR 213 (522)
Q Consensus 134 ~~~~ii~~ii~llgi~gN~lVi~vi~~~r~lr~~~~~li~nLAvaDll~~l~~lp~~i~~~~~~~~~~~~~~C~~~~~l~ 213 (522)
+++.++..++.++.++||++|++.+.-+|+|++..|+|+.+||+|||+.|.+.+|+...+.+.+.|++|...|.++..+.
T Consensus 31 v~i~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg~W~LG~~~CdlWLalD 110 (503)
T KOG4220|consen 31 VFIVVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMGYWPLGPLVCDLWLALD 110 (503)
T ss_pred EeeehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHHcccccchHHHHHHHHHH
Confidence 35667778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhccccccc-cCCchhhhhhHHHHHHHHHHHHHHHhhhccccccccCCCceEEecCCCc
Q psy17390 214 DISIGVSVFTLTALSAERYCAIVNPIRSHI-SSKPLTIVTAFAIWVLAIILALPSALFSHVQPATTASNDTIYFCSPFPI 292 (522)
Q Consensus 214 ~~~~~~Si~~L~~ISidRy~aI~~Pl~y~~-~t~r~~~~~i~~iWl~s~l~alp~~~~~~~~~~~~~~~~~~~~C~~~~~ 292 (522)
++.+.+|++.|..|++|||+.|++|+.|+. +|.+|+.++|++.|++|+++-.|.++++.+..... ......|.....
T Consensus 111 YvaSNASVmNLLiISFDRYFsVTrPLtYrakRTtkrA~~MI~~AW~iSfiLWaPaIl~WqyivGkr--Tv~~~eC~iQFl 188 (503)
T KOG4220|consen 111 YVASNASVMNLLIISFDRYFSVTRPLTYRAKRTTKRAGLMIGAAWVLSFVLWAPAILFWQYIVGKR--TVPDGECYIQFL 188 (503)
T ss_pred HHhhhhhhhhhheeeeecceeecccccccccccchHHHHHHHHHHHHHHHHHHHHHHhhHhheeee--ecCCCceEEEee
Confidence 999999999999999999999999999996 99999999999999999999999999988876432 222256875333
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy17390 293 EYGQQYKQTVVLCKFLAYYLGPLCVIACFYILMARHLELST 333 (522)
Q Consensus 293 ~~~~~~~~~y~~~~~i~~~~iPliiii~~Y~~I~~~lr~~~ 333 (522)
+ ..++.+-..+..|.+|..+|.++|.+|++..+++.
T Consensus 189 s-----np~iTfGTAiAAFYlPVtiM~~LY~rIyret~kR~ 224 (503)
T KOG4220|consen 189 S-----NPAITFGTAIAAFYLPVTIMTILYWRIYRETRKRQ 224 (503)
T ss_pred c-----CceeehhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 2 11233344477899999999999999999998743
No 7
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=100.00 E-value=1e-33 Score=289.92 Aligned_cols=273 Identities=21% Similarity=0.342 Sum_probs=213.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHhHHHHHHHHHHHhcchhhhhhhhcccccccccccchhhhh
Q psy17390 132 KLLKLTLTQFSELPFGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHICKLSEA 211 (522)
Q Consensus 132 ~~~~~~ii~~ii~llgi~gN~lVi~vi~~~r~lr~~~~~li~nLAvaDll~~l~~lp~~i~~~~~~~~~~~~~~C~~~~~ 211 (522)
...+..+++.+++++|++||+++++++.++ ++|++.|+++.|||++|++.++ ..|..+.....+.|.+++..|++..+
T Consensus 39 ~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~-~~~~~~~~~~~~~~~~~~~~C~~~~~ 116 (335)
T PHA03087 39 NSTILIVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVM-TLPFQIYYYILFQWSFGEFACKIVSG 116 (335)
T ss_pred hhhHHHHHHHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHH-hHHHHHHHHhCCCCCCCcHHHHHHHH
Confidence 344677888999999999999999999887 8899999999999999998877 56766656666789999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhccccccc-cCCchhhhhhHHHHHHHHHHHHHHHhhhccccccccCCCceEEecCC
Q psy17390 212 TRDISIGVSVFTLTALSAERYCAIVNPIRSHI-SSKPLTIVTAFAIWVLAIILALPSALFSHVQPATTASNDTIYFCSPF 290 (522)
Q Consensus 212 l~~~~~~~Si~~L~~ISidRy~aI~~Pl~y~~-~t~r~~~~~i~~iWl~s~l~alp~~~~~~~~~~~~~~~~~~~~C~~~ 290 (522)
+...+..+|++++++||+|||++|++|++|+. .+.+++..+++++|+++++.++|++........ .....|...
T Consensus 117 ~~~~~~~~S~~~l~~iaidRy~aI~~p~~~~~~~~~~~~~~~~~~iWl~~~~~~~p~~~~~~~~~~-----~~~~~C~~~ 191 (335)
T PHA03087 117 LYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIISIIETTPILFVYTTKKD-----HETLICCMF 191 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhHHHHHHHHHHHHHHhccHhheeeeecc-----CCCceEEec
Confidence 99999999999999999999999999999876 888899999999999999999998876554332 122467654
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccCcchhHHHHHHHHHHHHHHHHHHHHhhhH
Q psy17390 291 PIEYGQQYKQTVVLCKFLAYYLGPLCVIACFYILMARHLELSTRNMPGELLGQSSQSRARKKVAKMVSVLASSTLASTLS 370 (522)
Q Consensus 291 ~~~~~~~~~~~y~~~~~i~~~~iPliiii~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~k~~k~l~iiv~~f~lc~w~ 370 (522)
+......+...+.+...++.+++|+++++++|.+|++.+|++++ .++++|++|++++++++|++| |.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~i~~~l~~~~~------------~~~~~k~~k~l~~iv~~f~i~-w~ 258 (335)
T PHA03087 192 YNNKTMNWKLFINFEINIIGMLIPLTILLYCYSKILITLKGINK------------SKKNKKAIKLVLIIVILFVIF-WL 258 (335)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------------chhcchHHHhHHHHHHHHHHH-HH
Confidence 44322233333444455677999999999999999999987532 245678899999999999999 99
Q ss_pred HHHHHHHHhhc-----ccCCcchhhHHHHHHHHHHHhhhhccCChhhhHHhHHHHhHHH
Q psy17390 371 PYTSLVVCLGN-----ISTGICSVVVHLAVNYNMMSPWCHSIVPPVEDSTLALALGFHQ 424 (522)
Q Consensus 371 P~~i~~l~~~~-----~~~~~~~~~~~~~~~~~~~l~~~ns~lNPiIY~~iy~~~~~~~ 424 (522)
|+.+..++... ............+..+..++..+||++||+||.+....||+..
T Consensus 259 P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~~NPiIY~~~~~~fr~~~ 317 (335)
T PHA03087 259 PFNVSVFVYSLHILHFKSGCKAVKYIQYALHVTEIISLSHCCINPLIYAFVSEFFNKHK 317 (335)
T ss_pred HHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhHHHHcCHHHHHHH
Confidence 99987665421 1111112233445567788889999999997766666666555
No 8
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=100.00 E-value=2.5e-33 Score=272.53 Aligned_cols=255 Identities=22% Similarity=0.388 Sum_probs=213.1
Q ss_pred HhHHHHHHhhhccCCCCchhHHhHHHHHHHHHHHhcchhhhhhhhcccccccccccchhhhhhhhhhhHHHHHHHHHHHH
Q psy17390 150 GNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHICKLSEATRDISIGVSVFTLTALSA 229 (522)
Q Consensus 150 gN~lVi~vi~~~r~lr~~~~~li~nLAvaDll~~l~~lp~~i~~~~~~~~~~~~~~C~~~~~l~~~~~~~Si~~L~~ISi 229 (522)
||+++++++.++|++|++.+++++|||++|++.++...|..+.....+.|..++..|++..++..++..+|.+++++||+
T Consensus 1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~is~ 80 (257)
T PF00001_consen 1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFDDWIFSSFLCRIFGFLFYFSSFSSIFSLVAISI 80 (257)
T ss_dssp HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSSCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhehhhhhhhccCCChhHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999999999999999888888776666789999999999999999999999999999999
Q ss_pred HHHHHhhccccccc-cCCchhhhhhHHHHHHHHHHHHHHHhhhccccccccCCCceEEecCCCcccchhhHHHHHHHHHH
Q psy17390 230 ERYCAIVNPIRSHI-SSKPLTIVTAFAIWVLAIILALPSALFSHVQPATTASNDTIYFCSPFPIEYGQQYKQTVVLCKFL 308 (522)
Q Consensus 230 dRy~aI~~Pl~y~~-~t~r~~~~~i~~iWl~s~l~alp~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~y~~~~~i 308 (522)
|||++|++|++|++ .+++++..+++++|++++++++|+.+......... .....|........ ...+.....+
T Consensus 81 dRy~~i~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~---~~~~~C~~~~~~~~---~~~~~~~~~~ 154 (257)
T PF00001_consen 81 DRYLAICHPLRYRRIRTRRRARIIIILIWIISFLISLPPLFFSWVYFVSD---GSQSFCFIDFSSSS---SQIYFIYFFI 154 (257)
T ss_dssp HHHHHHHSHHTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEST---CCCEEEEESCSSSH---HHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc---cccccccccccccc---cccccccccc
Confidence 99999999999887 77789999999999999999999988755443221 11467886544322 4556667778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCc-cCcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcccCCcc
Q psy17390 309 AYYLGPLCVIACFYILMARHLELSTRNMPGEL-LGQSSQSRARKKVAKMVSVLASSTLASTLSPYTSLVVCLGNISTGIC 387 (522)
Q Consensus 309 ~~~~iPliiii~~Y~~I~~~lr~~~~~~~~~~-~~~~~~~~~~~k~~k~l~iiv~~f~lc~w~P~~i~~l~~~~~~~~~~ 387 (522)
+.+++|+++++++|.+|++.+|++.++.+... ...+++.++++|.++++++++++|++| |+|+.+..+.........
T Consensus 155 ~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~-~~P~~i~~~~~~~~~~~~- 232 (257)
T PF00001_consen 155 VFFILPLIIILICYIRILRKLRRQRKRIKSQSSSSSRRRSRRERRAARTLLIIVLVFLLC-WLPYFILSLLSVFSPSSS- 232 (257)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHCTCCHTSHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHSSTST-
T ss_pred cccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccc-CCceeHHHHHHHHcCccc-
Confidence 88999999999999999999999887654432 233456688899999999999999999 999999988775544431
Q ss_pred hhhHHHHHHHHHHHhhhhccCChhhh
Q psy17390 388 SVVVHLAVNYNMMSPWCHSIVPPVED 413 (522)
Q Consensus 388 ~~~~~~~~~~~~~l~~~ns~lNPiIY 413 (522)
. .......+..++.++||++||+||
T Consensus 233 ~-~~~~~~~~~~~l~~~~s~~nP~iY 257 (257)
T PF00001_consen 233 L-ISSILFYISYFLAFLNSCLNPIIY 257 (257)
T ss_dssp C-SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h-hhHHHHHHHHHHHHHHHhhCcEEC
Confidence 1 456667888999999999999987
No 9
>KOG2087|consensus
Probab=99.96 E-value=4.2e-30 Score=251.99 Aligned_cols=285 Identities=18% Similarity=0.131 Sum_probs=217.2
Q ss_pred cccCchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHhHHHHHHHHHHHhcchhhhhhhhcc-c----
Q psy17390 123 AKVGSQKLRKLLKLTLTQFSELPFGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTL-E---- 197 (522)
Q Consensus 123 ~~~~~~~~~~~~~~~ii~~ii~llgi~gN~lVi~vi~~~r~lr~~~~~li~nLAvaDll~~l~~lp~~i~~~~~-~---- 197 (522)
...+.+++....++.+..+++.+++++||++|++.....+...++..++|+|||+||+++|+....+..++... +
T Consensus 14 a~~pcEdllg~~~lRi~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~ 93 (363)
T KOG2087|consen 14 AFNPCEDLLGYWILRISVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYK 93 (363)
T ss_pred CCCcHHHhhccceeeehhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHH
Confidence 34455666777778888899999999999999999988888888999999999999999999766666654433 1
Q ss_pred ---ccccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhhccccccc-cCCchhhhhhHHHHHHHHHHHHHHHhhhcc
Q psy17390 198 ---SWPYGPHICKLSEATRDISIGVSVFTLTALSAERYCAIVNPIRSHI-SSKPLTIVTAFAIWVLAIILALPSALFSHV 273 (522)
Q Consensus 198 ---~~~~~~~~C~~~~~l~~~~~~~Si~~L~~ISidRy~aI~~Pl~y~~-~t~r~~~~~i~~iWl~s~l~alp~~~~~~~ 273 (522)
.|. +...|++.||+..+++..|+++|+.+++||+++|++|++.++ ...|.+..+++..|+.++++++.|+++...
T Consensus 94 ~ai~W~-tg~gC~~aGflavFASElSv~~LT~itlEr~l~i~~p~~~~~~~~lr~~~~ill~~wl~~~l~A~~Pl~g~s~ 172 (363)
T KOG2087|consen 94 HAIDWQ-TGLGCPVAGFLAVFASELSVFLLTLITLERWLSITYPFRLDRKAKLRPLVLILLLGWLFAFLMALLPLFGISS 172 (363)
T ss_pred HHHhhh-hcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhheeccccCCCcccccHHHHHHHHHHHHHHHHHhccccCCCC
Confidence 244 445999999999999999999999999999999999999776 445559999999999999999998887443
Q ss_pred ccccccCCCceEEecCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccCcchhHHHHHHH
Q psy17390 274 QPATTASNDTIYFCSPFPIEYGQQYKQTVVLCKFLAYYLGPLCVIACFYILMARHLELSTRNMPGELLGQSSQSRARKKV 353 (522)
Q Consensus 274 ~~~~~~~~~~~~~C~~~~~~~~~~~~~~y~~~~~i~~~~iPliiii~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~k~ 353 (522)
+. ....|.+...+. .....|.+..++....+.+++|.++|++|+..+++..... ...+.+.
T Consensus 173 Y~-------~~~vClPL~~~~--~~s~g~y~~~~l~~N~lafiiia~~Y~~iy~~l~~~~~~~----------~~~~~~~ 233 (363)
T KOG2087|consen 173 YG-------ASSVCLPLHIEE--PLSTGYYLVALLGLNLLAFIIIAFSYGKIYCSLRKGDLSA----------TLISTSV 233 (363)
T ss_pred Cc-------ccceeeecccCC--ccchhHHHHHHHHHHHHHHHHHHHHhhhhheeeecCCCcc----------ccchhhh
Confidence 33 347898755442 2223266666778899999999999999999998864321 1112588
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhhcccCCcchhhHHHHHHHHHHHhhhhccCChhhhHHhHHHHhHHHHHHhhhh
Q psy17390 354 AKMVSVLASSTLASTLSPYTSLVVCLGNISTGICSVVVHLAVNYNMMSPWCHSIVPPVEDSTLALALGFHQIQSFTKL 431 (522)
Q Consensus 354 ~k~l~iiv~~f~lc~w~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~lNPiIY~~iy~~~~~~~~~~frk~ 431 (522)
+|.++.++.+.++| |.|.+++.+......+- ........+..+...+|||+||++|++....|+...+....|.
T Consensus 234 akr~a~LvfTd~ic-w~Pi~f~~~~al~~~~l---i~~~~sk~llv~flPlns~~NP~LYa~fT~~fk~d~~~l~~k~ 307 (363)
T KOG2087|consen 234 AKRMAFLVFTDCIC-WCPIAFFKFSALIGVEL---ISVSYSKWLLVFFLPLNSCLNPFLYAFFTPVFKEDLFLLLSKV 307 (363)
T ss_pred hhCeeEEEEccccc-cCchheeeeHHhcCCcc---cChhhceeEEEEEEEcccccCchhHHHcCHHHHHHHHHHHhhc
Confidence 89999999999999 99999888765332111 1111222334455678999999988777777766664444443
No 10
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.77 E-value=1.7e-18 Score=170.41 Aligned_cols=251 Identities=17% Similarity=0.147 Sum_probs=166.4
Q ss_pred HHHHHHhHHHHHHhhhccCCCCchhHHhHHHHHHHHHHHhcchhhhhhhhcccccccccccchhhhhhhhhhhHHHHHHH
Q psy17390 145 PFGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHICKLSEATRDISIGVSVFTL 224 (522)
Q Consensus 145 llgi~gN~lVi~vi~~~r~lr~~~~~li~nLAvaDll~~l~~lp~~i~~~~~~~~~~~~~~C~~~~~l~~~~~~~Si~~L 224 (522)
++|++||+.++.++.++|++|+|.+++++.+|++|++.++..+|..+... ++.......|-...+...++..++...+
T Consensus 2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~~--~~~~i~~~~Cf~~~~~~~f~~~~qs~~~ 79 (257)
T PF10320_consen 2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLFLF--RDHQITRSECFWQIFFYIFFQCAQSVIM 79 (257)
T ss_pred EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHHHH--hheeccHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999987777665332 3334566689999999999999999999
Q ss_pred HHHHHHHHHHhhccccccc-cCCchhhhhhHHHHHHHHHHHHHHHhhhccccccccCCCceEEecCCCcccchhhHHHHH
Q psy17390 225 TALSAERYCAIVNPIRSHI-SSKPLTIVTAFAIWVLAIILALPSALFSHVQPATTASNDTIYFCSPFPIEYGQQYKQTVV 303 (522)
Q Consensus 225 ~~ISidRy~aI~~Pl~y~~-~t~r~~~~~i~~iWl~s~l~alp~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~y~ 303 (522)
.+|++||++||+.|++|+. .+.+..........+++....+..++.. +++....|.+...-.+.. ...+.
T Consensus 80 l~i~iDr~iaV~~P~~Y~~~~~~~y~~~~~~~~~~~s~~~~~~~~~~~--------~~~~~~~C~pp~a~~~~~-~~~~~ 150 (257)
T PF10320_consen 80 LAIAIDRLIAVCFPLRYRTISTRKYLIILLIFPVIYSIFFTVIGFLYR--------DDETIVICNPPLAFHGTA-SQIWS 150 (257)
T ss_pred HHHHhhheeeEeehhhhhhcccccchhhHhHHHHHHHHHHHhheeEec--------CCcccccCCCccccCccH-HHHHH
Confidence 9999999999999999998 4444444444444444444332211111 222346898644332222 22222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccCcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccc
Q psy17390 304 LCKFLAYYLGPLCVIACFYILMARHLELSTRNMPGELLGQSSQSRARKKVAKMVSVLASSTLASTLSPYTSLVVCLGNIS 383 (522)
Q Consensus 304 ~~~~i~~~~iPliiii~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~k~~k~l~iiv~~f~lc~w~P~~i~~l~~~~~~ 383 (522)
.. .++.-+++++.|...+..+|++.++ ..++++|..|.+.++++.|+.. |.-..+...+.....
T Consensus 151 ~~-----~~~inv~tvivY~i~~~~~~~k~~~----------~~~~~~kv~ksL~v~v~i~i~~-w~~s~~~~~v~~~~~ 214 (257)
T PF10320_consen 151 YS-----NIIINVITVIVYIITIIIFKRKSRS----------NSSRSKKVFKSLKVTVIIFIFS-WFLSQIINTVSLALG 214 (257)
T ss_pred HH-----HHHHHHHHHHHHHHHHHHHHHHccc----------cchhHHHHHHHhhhheeeeeHH-HHHHHHHHHHHHHhC
Confidence 22 1122234556777777777775432 3455778888888888877777 554444433332222
Q ss_pred CCcchhhHHHHHHHHHHHhhhhccCChhhhHHhHHHHhHHH
Q psy17390 384 TGICSVVVHLAVNYNMMSPWCHSIVPPVEDSTLALALGFHQ 424 (522)
Q Consensus 384 ~~~~~~~~~~~~~~~~~l~~~ns~lNPiIY~~iy~~~~~~~ 424 (522)
.+ ............++..+|.+.|-++|-+...-||..+
T Consensus 215 ~~--~~~~~~i~~~~~i~v~~~~s~~ffV~~~~S~EYR~af 253 (257)
T PF10320_consen 215 LD--GETIAIIQMYAGIFVNISYSQNFFVYYWRSSEYRKAF 253 (257)
T ss_pred Cc--HHHHHHHHHHHHHHHHHHHHHHheEEEEcCHHHHHHH
Confidence 11 2222333455667777899999998866665555555
No 11
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=99.76 E-value=3.2e-17 Score=166.72 Aligned_cols=283 Identities=16% Similarity=0.175 Sum_probs=197.9
Q ss_pred HHHHHHHHHhHHHHHHhhhccCCCC-chhHHhHHHHHHHHHHHhcchhhhhhhhccc---c--ccc----ccccchhhhh
Q psy17390 142 SELPFGVLGNGTLVLIFARHKNMRS-VPNTYILSLALGDLLVIICGVPFTSTLYTLE---S--WPY----GPHICKLSEA 211 (522)
Q Consensus 142 ii~llgi~gN~lVi~vi~~~r~lr~-~~~~li~nLAvaDll~~l~~lp~~i~~~~~~---~--~~~----~~~~C~~~~~ 211 (522)
++.++|+++|++.++++.| |.+|+ +.|.+++.+|++|++..+..++..+...... . .+. ......+...
T Consensus 5 ~~~~~g~~~N~~h~~VLtr-k~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~~~~~~ 83 (318)
T PF10324_consen 5 ILSIFGLFINIFHLIVLTR-KSMRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFKLIMES 83 (318)
T ss_pred EEeHHHHHHHHHHhhhcCC-hhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHH
Confidence 4578999999999998864 67775 8899999999999999998777766433322 1 011 1112334556
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhcccccc--c-cCCchhhhhhHHHHHHHHHHHHHHHhhhccccccccCCCceEEec
Q psy17390 212 TRDISIGVSVFTLTALSAERYCAIVNPIRSH--I-SSKPLTIVTAFAIWVLAIILALPSALFSHVQPATTASNDTIYFCS 288 (522)
Q Consensus 212 l~~~~~~~Si~~L~~ISidRy~aI~~Pl~y~--~-~t~r~~~~~i~~iWl~s~l~alp~~~~~~~~~~~~~~~~~~~~C~ 288 (522)
+...+-.+|.|..++||+.|+++|.+|+..+ . .+++.+..++.++++++++..++.++.....+.+.... ....|.
T Consensus 84 l~~~~~~~S~WL~V~mA~iR~l~i~~p~~~~~~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~~~i~~~~~~~~-p~~~C~ 162 (318)
T PF10324_consen 84 LSDIFRRISIWLGVLMALIRYLSIKFPMSSRFQKLSKPKFAIIVILIVFIISFLFSIPYFFRYKIVEVSDPWV-PPPNCS 162 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeeeeehHHHHHHHHHHHHHhhceEEEEecccccc-CCCcee
Confidence 7778888999999999999999999999865 3 56777888899999999999999887766654321111 113475
Q ss_pred CCCcc-----c-----------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccCcchhHHHHHH
Q psy17390 289 PFPIE-----Y-----------GQQYKQTVVLCKFLAYYLGPLCVIACFYILMARHLELSTRNMPGELLGQSSQSRARKK 352 (522)
Q Consensus 289 ~~~~~-----~-----------~~~~~~~y~~~~~i~~~~iPliiii~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~k 352 (522)
..+.. . +......+.+...++.-++|.++..+..+.+.+.+|+.++++++..+. + .+++.+
T Consensus 163 ~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~gi~~kiiP~il~~ilti~Li~~Lrk~~~~r~~~~~~--~-~~~~~~ 239 (318)
T PF10324_consen 163 GFPENYTFPRYMLNISELFTENDCLFFRIYFFIDGIFFKIIPCILLPILTILLIIELRKAKKRRKKLSSS--K-SKKSDR 239 (318)
T ss_pred eccccccccccchhhhhhhhhhHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHhccHhhhccccc--c-cccccc
Confidence 22211 0 111122344444455578999999999999999999987765444311 1 456788
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhcccCCc-chhhHHHHHHHHHHHhhhhccCChhhhHHhHHHHhHHHHHHhhhh
Q psy17390 353 VAKMVSVLASSTLASTLSPYTSLVVCLGNISTGI-CSVVVHLAVNYNMMSPWCHSIVPPVEDSTLALALGFHQIQSFTKL 431 (522)
Q Consensus 353 ~~k~l~iiv~~f~lc~w~P~~i~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~ns~lNPiIY~~iy~~~~~~~~~~frk~ 431 (522)
.+++++++++.|+++ =.|..+..++......+. ..........+...+..+|+..|++||..+..- .|+.+++.
T Consensus 240 tt~li~~~ti~f~i~-e~p~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~h~~ic~~mSsq----YR~t~~~~ 314 (318)
T PF10324_consen 240 TTKLILFMTISFLIS-ELPQGIIFLLESFFEEDSGLIFIIIQLSIIFNILITINSSIHFFICCFMSSQ----YRKTVKKL 314 (318)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhHHHhhhhhhHH----HHHHHHHH
Confidence 999999999999999 799999888865432221 233344455677888889999999966555544 44445666
Q ss_pred cCc
Q psy17390 432 SSV 434 (522)
Q Consensus 432 ~~~ 434 (522)
+++
T Consensus 315 f~~ 317 (318)
T PF10324_consen 315 FGC 317 (318)
T ss_pred hcc
Confidence 654
No 12
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.63 E-value=2.2e-14 Score=142.75 Aligned_cols=261 Identities=12% Similarity=0.031 Sum_probs=170.7
Q ss_pred HHHHHHHHHhHHHHHHhhhccCCCCchhHHhHHHHHHHHHHHhcchhhhhhhhcccccccccccch-hhhhhhhhhhHHH
Q psy17390 142 SELPFGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHICK-LSEATRDISIGVS 220 (522)
Q Consensus 142 ii~llgi~gN~lVi~vi~~~r~lr~~~~~li~nLAvaDll~~l~~lp~~i~~~~~~~~~~~~~~C~-~~~~l~~~~~~~S 220 (522)
++.++|++.|.++++.+.+.+++|++.+++-.+.|++|.+.++..+-........+.....+.... +.+.....+...+
T Consensus 2 ~~s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~l~~~~P~~~~~~~~~~~~~~s~~~g~~~~~~y~~~ 81 (274)
T PF10328_consen 2 LISIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIFLFWVVPMTLLDISFLPSSLNSIIFGFIGMFCYFIG 81 (274)
T ss_pred eeeHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCchHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999999999854433332233333233333333 3478888889999
Q ss_pred HHHHHHHHHHHHHHhhccccccc-cCCchhhhhhHHHHHHHHHHHHHHHhhhccccccccCCCceEEecCCCcccchhhH
Q psy17390 221 VFTLTALSAERYCAIVNPIRSHI-SSKPLTIVTAFAIWVLAIILALPSALFSHVQPATTASNDTIYFCSPFPIEYGQQYK 299 (522)
Q Consensus 221 i~~L~~ISidRy~aI~~Pl~y~~-~t~r~~~~~i~~iWl~s~l~alp~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~ 299 (522)
.++-++||++|+.||..|.+|++ .+.+.+..+++++|++++....+..+..+..-.- .....-.....+ +.-
T Consensus 82 ~~~~~liaiNRf~ai~fP~~y~~~fs~~~T~~~i~~~~~~~~~~~~~~~~~~~C~~~y----~~~~~~~~~~~~---~~C 154 (274)
T PF10328_consen 82 PLSHLLIAINRFCAIFFPFKYKKIFSFKNTIILIAFIWLLSIIISTILYFPDGCYFYY----DPETWSWSYPTD---PPC 154 (274)
T ss_pred HHHHHHHHHHHHheeeeHHHHHhHcCccceehhhhHHHHHHHHHHHHhhhcCCCccee----ccceeeeecCCC---Ccc
Confidence 99999999999999999999887 8999999999999999997776665532221110 000111111000 001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccCcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Q psy17390 300 QTVVLCKFLAYYLGPLCVIACFYILMARHLELSTRNMPGELLGQSSQSRARKKVAKMVSVLASSTLASTLSPYTSLVVCL 379 (522)
Q Consensus 300 ~~y~~~~~i~~~~iPliiii~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~k~~k~l~iiv~~f~lc~w~P~~i~~l~~ 379 (522)
..+..........+-.+++.++++.++.++++.+++........++++++|.+..+...+.-..+++. +.-+.+..-..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~lni~t~ikl~~~~~~~~~~~~~s~~r~rke~~f~~Qs~~Q~~~~~i~-~~~~~~~~~~~ 233 (274)
T PF10328_consen 155 GNYSWYFDFYKNFILVIISNILNIITFIKLRKFRKKISVSSSESKKRRRKEIRFFIQSFIQDLLYLID-LIFYFFIPPLS 233 (274)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhc
Confidence 11112122333445556677888888888888777664444455677788888888888888888877 55554443221
Q ss_pred hcccCCcchhhHHHHHHHHHHHhhhhccCChhhhHHhHHH
Q psy17390 380 GNISTGICSVVVHLAVNYNMMSPWCHSIVPPVEDSTLALA 419 (522)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~l~~~ns~lNPiIY~~iy~~ 419 (522)
+ + .+..+....+...+.-++|++|+-.++.-
T Consensus 234 ---~-~-----~~~~F~~~t~~w~~~h~~DG~i~l~fN~~ 264 (274)
T PF10328_consen 234 ---S-N-----RWWQFFCTTFSWVLVHALDGLIMLIFNSE 264 (274)
T ss_pred ---c-c-----cHHHHHHHHHHHHHHHHhcceeEeEEcHH
Confidence 1 1 12222333333344566899976444433
No 13
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.47 E-value=1.1e-12 Score=130.99 Aligned_cols=269 Identities=10% Similarity=0.089 Sum_probs=170.3
Q ss_pred HHHHHHHhHHHHHHhhhccC----CCCchhHHhHHHHHHHHHHHhcchhhhhhhhcc--cc--cccccccchhhhhhhhh
Q psy17390 144 LPFGVLGNGTLVLIFARHKN----MRSVPNTYILSLALGDLLVIICGVPFTSTLYTL--ES--WPYGPHICKLSEATRDI 215 (522)
Q Consensus 144 ~llgi~gN~lVi~vi~~~r~----lr~~~~~li~nLAvaDll~~l~~lp~~i~~~~~--~~--~~~~~~~C~~~~~l~~~ 215 (522)
+++.+.-.+.+++++.+.|+ ++++.+-++.+-++||++..+............ .+ ...++..-++.....+.
T Consensus 5 ~~~tlply~~il~~l~~~r~~~~~~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~y~ 84 (283)
T PF10323_consen 5 SIVTLPLYIFILYCLLKLRKRSKTFKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSYQTYYAAIYYNIAYY 84 (283)
T ss_pred EeehHHHHHHHHHHHHHcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHH
Confidence 34556667777777776554 458889999999999999987544433321110 11 11233334555666677
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccc-cccc-cCCchhhhhhHHHHHHHHHHHHHHHhhhccccccccCCCceEEecCCCcc
Q psy17390 216 SIGVSVFTLTALSAERYCAIVNPI-RSHI-SSKPLTIVTAFAIWVLAIILALPSALFSHVQPATTASNDTIYFCSPFPIE 293 (522)
Q Consensus 216 ~~~~Si~~L~~ISidRy~aI~~Pl-~y~~-~t~r~~~~~i~~iWl~s~l~alp~~~~~~~~~~~~~~~~~~~~C~~~~~~ 293 (522)
...+.....+.+|++||.||++|. ++.+ .++.+...++++-|+.+++.++|.+......... .+ + ....
T Consensus 85 ~~~~~~~gi~lls~nR~~ai~~P~~~~~~~~~~~~~~~i~~i~wi~p~li~~~~~~~~~~~f~~-~~--~------~~~~ 155 (283)
T PF10323_consen 85 FLYIQCIGIVLLSLNRYLAICFPTSRHTKFWQPAKIWIIILIQWIPPLLISLPFFFDTDFYFDN-EE--N------MSLF 155 (283)
T ss_pred HHHHHHHhHHHHHHhhhheEEeecHHHhhhccccchhheeeeeehhhhhheeeeeccCceeeec-cc--c------eeee
Confidence 777888899999999999999999 5554 8888888999999999999999965543332211 01 1 1111
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccCcchhHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy17390 294 YGQQYKQTVVLCKFLAYYLGPLCVIACFYILMARHLELSTRNMPGELLGQSSQSRARKKVAKMVSVLASSTLASTLSPYT 373 (522)
Q Consensus 294 ~~~~~~~~y~~~~~i~~~~iPliiii~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~k~~k~l~iiv~~f~lc~w~P~~ 373 (522)
.+..... ...........+-+++.+++|+.++..+||+.+ .+..+.+++.++|.+.+.+.+++++++++. +=+.
T Consensus 156 ~d~~~~~-~~~~~~~~~~~~~cv~~iv~Y~~i~~~iRk~~k---~~s~~~s~~~~rE~~L~~~~~i~~~a~~~~--~~~~ 229 (283)
T PF10323_consen 156 VDPEFIQ-RNFLIAFIFVSVTCVICIVCYGIIFIFIRKRNK---KKSKSSSRSRRREIRLAIQVFILFCAFFVI--LVYY 229 (283)
T ss_pred cCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhHhhhhhhhHhHHHHHHHHHHHHHHHHH--HHHH
Confidence 1112222 222233444566677889999999999998764 223334566678888888887777766654 3333
Q ss_pred HHHHHhhcccCCcchhhHHHHHHHHHHHhhhhccCChhhhHHhHHHHhHHHHHHhhhhcCc
Q psy17390 374 SLVVCLGNISTGICSVVVHLAVNYNMMSPWCHSIVPPVEDSTLALALGFHQIQSFTKLSSV 434 (522)
Q Consensus 374 i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~lNPiIY~~iy~~~~~~~~~~frk~~~~ 434 (522)
+........ ...............+..+.|.+||+ .=.++++..|+.+++.++|
T Consensus 230 ~~~~~~~~~---~~~~~~~~~r~~y~~~~~~~s~inP~----~LLi~n~~lr~~~~~~~~~ 283 (283)
T PF10323_consen 230 IFSNYFAQN---FNTDPIFYLRAFYPILNGLLSFINPW----MLLIFNKDLRKQVRRMLKC 283 (283)
T ss_pred HHHHHHHhc---ccchHHHHHHHHHHHHHHHHHhhhhH----HhhhccHHHHHHHHHHcCC
Confidence 333322221 11111222223455566668889999 6677777787777877764
No 14
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=99.41 E-value=5e-11 Score=120.07 Aligned_cols=285 Identities=13% Similarity=0.039 Sum_probs=180.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhh---ccCCCCchhHHhHHHHHHHHHHHhcchhhhhhhhcccccccccccchhhh
Q psy17390 134 LKLTLTQFSELPFGVLGNGTLVLIFAR---HKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHICKLSE 210 (522)
Q Consensus 134 ~~~~ii~~ii~llgi~gN~lVi~vi~~---~r~lr~~~~~li~nLAvaDll~~l~~lp~~i~~~~~~~~~~~~~~C~~~~ 210 (522)
.+..++..+.+++|++||+.++++... +++.-+|.+..+.+||+++++.....................+..++...
T Consensus 7 ~i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (303)
T PF05296_consen 7 IIFLIILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSFLSFFFPNIYFSENVYKIID 86 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHHHHH
Confidence 455777788999999999999988764 33434799999999999999988765544444444444445566889999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhcccccc-----ccCCchhhhhhHHHHHHHHHHHHHHHhhhccccccccCCCceE
Q psy17390 211 ATRDISIGVSVFTLTALSAERYCAIVNPIRSH-----ISSKPLTIVTAFAIWVLAIILALPSALFSHVQPATTASNDTIY 285 (522)
Q Consensus 211 ~l~~~~~~~Si~~L~~ISidRy~aI~~Pl~y~-----~~t~r~~~~~i~~iWl~s~l~alp~~~~~~~~~~~~~~~~~~~ 285 (522)
++..+....|.|..+++++--++.|+..-+.- +.=.+....++.+.++++++..++........... ....
T Consensus 87 ~~~~f~~~~s~W~tt~LsvfYcvKI~~fs~~~Fl~LK~rI~~~v~~lLl~s~l~s~~~~~~~~~~~~~~~~~----~~~~ 162 (303)
T PF05296_consen 87 FLWMFSNSSSLWFTTWLSVFYCVKIANFSHPFFLWLKRRISKVVPWLLLGSLLISFLNLLSIPLFIDNHINN----NNTN 162 (303)
T ss_pred HHHHHHhHHHHHHHHHHHHHHheeeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecc----cccc
Confidence 99999999999999999999999998653311 12223344566777788873333322222221100 0001
Q ss_pred EecCCCc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccC-cchhHHHHHHHHHHHHHHHHH
Q psy17390 286 FCSPFPI-EYGQQYKQTVVLCKFLAYYLGPLCVIACFYILMARHLELSTRNMPGELLG-QSSQSRARKKVAKMVSVLASS 363 (522)
Q Consensus 286 ~C~~~~~-~~~~~~~~~y~~~~~i~~~~iPliiii~~Y~~I~~~lr~~~~~~~~~~~~-~~~~~~~~~k~~k~l~iiv~~ 363 (522)
.+..... .........+......+..++|+++++++-..+...++||.|+.+.+..+ ++.+.++..|++|+++..++.
T Consensus 163 ~~~N~t~~~~~~~~~~~~~~~~~~~~~~lPf~i~l~s~~lli~SL~rH~r~M~~n~~g~~~ps~~aH~~a~k~~~sfl~l 242 (303)
T PF05296_consen 163 NSRNSTSNFQESKSSYFYFFILFNLGSFLPFLIFLVSSILLIFSLWRHMRRMQKNATGFRDPSTEAHIRAIKTMISFLIL 242 (303)
T ss_pred CCCcceEEeecchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 1111111 01122233344444458899999999999999999999999988776544 567778999999999988887
Q ss_pred HHHhhhHHHHHHHHHhhcccCCcchhhHHHHHHHHHHHhhhhccCChhhhHHhHHHHhHHHHHHhhhhcCc
Q psy17390 364 TLASTLSPYTSLVVCLGNISTGICSVVVHLAVNYNMMSPWCHSIVPPVEDSTLALALGFHQIQSFTKLSSV 434 (522)
Q Consensus 364 f~lc~w~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~lNPiIY~~iy~~~~~~~~~~frk~~~~ 434 (522)
|.++ +.-..+... ....+.+ .....+......+.+..-|+ +=..=..+.|+.++|.+++
T Consensus 243 y~~~-~~~~~~~~~-~~~~~~~------~~~~~~~~~i~~~yps~hs~----iLIlgn~KLr~~~~~il~~ 301 (303)
T PF05296_consen 243 YIIY-FLSLILSFL-SFFFPEN------SIWFWVCEIIIALYPSGHSI----ILILGNPKLRQALLKILWC 301 (303)
T ss_pred HHHH-HHHHHHHHH-HHHhccc------cHHHHHHHHHHHHHHHHHHH----HHhcCchHHHHHHHHHHhh
Confidence 7766 433322111 1111111 11122333444445555665 4344445566666666654
No 15
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=99.27 E-value=1e-09 Score=109.69 Aligned_cols=129 Identities=16% Similarity=0.219 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHhHHHHHHHHHHHhcchhhhhhhhcccccccccccchhhhhhhhh
Q psy17390 136 LTLTQFSELPFGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHICKLSEATRDI 215 (522)
Q Consensus 136 ~~ii~~ii~llgi~gN~lVi~vi~~~r~lr~~~~~li~nLAvaDll~~l~~lp~~i~~~~~~~~~~~~~~C~~~~~l~~~ 215 (522)
+.++..+..+++++|-+++++.+++.|++|++.+-++.-++++|++..+..+..... .....+...|.+++++..+
T Consensus 9 ~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~~~~----~~~~~~s~lC~~Qafliq~ 84 (303)
T PF05462_consen 9 LYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIMTLS----PSAGENSFLCQFQAFLIQF 84 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHhc----ccCCCCCcchhhHhHHHHH
Confidence 445556778889999999999999999999999999999999999987644332211 2223456789999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccccccccCCchhhhhhHHHHHHHHHHHHHHHhhh
Q psy17390 216 SIGVSVFTLTALSAERYCAIVNPIRSHISSKPLTIVTAFAIWVLAIILALPSALFS 271 (522)
Q Consensus 216 ~~~~Si~~L~~ISidRy~aI~~Pl~y~~~t~r~~~~~i~~iWl~s~l~alp~~~~~ 271 (522)
+..++.+-.++||++=|..+++... -.+|.-..-.+++|.++++.++.++...
T Consensus 85 f~~as~lWt~~iA~nly~~~~~~~~---~~~k~e~~Y~l~~wGiPli~a~i~l~~~ 137 (303)
T PF05462_consen 85 FMLASFLWTLCIAFNLYLTFVKRYD---ELEKLEKYYHLVCWGIPLIPAVIPLIGN 137 (303)
T ss_pred hhHHHHHHHHHHHHHhhheeEEcCc---cHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999987532 2244445678899999999988776543
No 16
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.03 E-value=1.9e-08 Score=101.22 Aligned_cols=266 Identities=13% Similarity=0.088 Sum_probs=160.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHhHHHHHHHHHHHhcchhhhhhhhcccccccccccchh-----
Q psy17390 134 LKLTLTQFSELPFGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHICKL----- 208 (522)
Q Consensus 134 ~~~~ii~~ii~llgi~gN~lVi~vi~~~r~lr~~~~~li~nLAvaDll~~l~~lp~~i~~~~~~~~~~~~~~C~~----- 208 (522)
.++++.+.+.+++-.+..+.++.++.+++..|.+.+-++.-||+.|++.....-...-...+ .|...|..
T Consensus 33 p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~~si~tG~l~i-----~G~vfC~~P~~~~ 107 (313)
T PF10321_consen 33 PILGIYFLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFINSIITGILAI-----FGAVFCSYPRFIY 107 (313)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHhhhhhhhHHHh-----cCccccCCchHhh
Confidence 35777778888888889999999999888778999999999999999998643222222222 23445544
Q ss_pred -hhhhhhhhhHHHHHHHHHHHHHHHHHhhccccccc-cCCchhhhhhHHHHHHHHHHH--HHHHhhhccccccccCCCce
Q psy17390 209 -SEATRDISIGVSVFTLTALSAERYCAIVNPIRSHI-SSKPLTIVTAFAIWVLAIILA--LPSALFSHVQPATTASNDTI 284 (522)
Q Consensus 209 -~~~l~~~~~~~Si~~L~~ISidRy~aI~~Pl~y~~-~t~r~~~~~i~~iWl~s~l~a--lp~~~~~~~~~~~~~~~~~~ 284 (522)
.|.+...+-.++...-..++++|..-+..|..... ..++++..++.+..++++... .+|........
T Consensus 108 i~G~~~~~~W~~~c~~~i~LainR~~~l~~~~~~~~~F~g~~~~~~l~~~~iY~~y~~~fT~pv~Fns~~~--------- 178 (313)
T PF10321_consen 108 IMGCIALGSWCGSCIICILLAINRCCELNFPFKLKFLFEGKRTYIVLFLPIIYGFYFSFFTPPVLFNSEYM--------- 178 (313)
T ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHhcchhhHHhhcCceEEeeehhHHHHHHHHHHHcCcccCCCCcc---------
Confidence 44555666678888899999999999999877554 576776655555444443333 34443222111
Q ss_pred EEecCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccCcchhHHHHHHHHHHHHHHHHHH
Q psy17390 285 YFCSPFPIEYGQQYKQTVVLCKFLAYYLGPLCVIACFYILMARHLELSTRNMPGELLGQSSQSRARKKVAKMVSVLASST 364 (522)
Q Consensus 285 ~~C~~~~~~~~~~~~~~y~~~~~i~~~~iPliiii~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~k~~k~l~iiv~~f 364 (522)
..-.+ +...+......|.-....+-.++-.+.+..+|+.+...++++.+.. .+++..+++++...-..++.+..
T Consensus 179 sw~fD-P~i~~g~~~~~Y~N~~~~~nN~~~~~~t~~lY~~l~~~l~~k~~~~-----~s~~~~k~~~qI~iQs~iIC~f~ 252 (313)
T PF10321_consen 179 SWFFD-PMIFEGKSPELYSNIPHTFNNIIVVICTTFLYIYLCYYLIKKSKYS-----TSSQLSKAQRQIFIQSVIICFFH 252 (313)
T ss_pred eEecC-ccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----cchhhhhhhHHHHHHHHHHHHHH
Confidence 11111 1110000111122222233355556778889999999998876543 22344455556655555555544
Q ss_pred HHhhhHHHHHHHHHhhcccCCcchhhHHHHHHHHHHHhhhhccCChhhhHHhHHHHhHHHHHHhhhhcCc
Q psy17390 365 LASTLSPYTSLVVCLGNISTGICSVVVHLAVNYNMMSPWCHSIVPPVEDSTLALALGFHQIQSFTKLSSV 434 (522)
Q Consensus 365 ~lc~w~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~lNPiIY~~iy~~~~~~~~~~frk~~~~ 434 (522)
.+. +.-|..+.. .. ...+......+.--+++..+|+|| ..+.+..|++++|.++.
T Consensus 253 ~i~-a~iyv~m~f----~~------~p~~~i~~~~~~Wql~~g~~~iIY----l~lNrtIR~~~~k~~~~ 307 (313)
T PF10321_consen 253 AIA-AVIYVYMQF----FP------PPPWLIIIGQISWQLSHGCPPIIY----LTLNRTIRNSVLKMLGP 307 (313)
T ss_pred HHH-HHHHHeeee----ec------ccHHHHHHHHHHHhccCCccceEE----EEECHHHHHHHHHHHcc
Confidence 444 333332222 11 123445566777778999999966 55555666666776654
No 17
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=98.90 E-value=6.4e-08 Score=91.43 Aligned_cols=178 Identities=13% Similarity=0.053 Sum_probs=108.4
Q ss_pred HHHHHHhHHHHHHhhh-ccCCCCchhHHhHHHHHHHHHHHhcchhhhhhhhcccccccccccchhhhhhhhhhhHHHHHH
Q psy17390 145 PFGVLGNGTLVLIFAR-HKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHICKLSEATRDISIGVSVFT 223 (522)
Q Consensus 145 llgi~gN~lVi~vi~~-~r~lr~~~~~li~nLAvaDll~~l~~lp~~i~~~~~~~~~~~~~~C~~~~~l~~~~~~~Si~~ 223 (522)
.+++++=+.+++.+.. .++++.-.+-++.||.++|++.++..+...+.....+.-..+...|..+|++..++..++-+.
T Consensus 12 ~lSlls~~~~l~~~~~~~~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l~~~~i~~~s~~C~aqGf~~q~g~~~sd~~ 91 (201)
T PF11710_consen 12 ALSLLSSLAVLYLFFFITYRRRSFRHQLILNLLLADFIQALAFLISPIRWLARGGIIAPSPFCQAQGFFLQVGDEASDLW 91 (201)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeCCCCchhhhHHHHHHHHHHHHHH
Confidence 3333333334443333 244456666799999999999998655544455544445556789999999999999999999
Q ss_pred HHHHHHHHHHHhhcccc------ccc--c--CCchhhhhhHHHHHHHHHHHHHHHhhhccccccccCCCceEEecCCCcc
Q psy17390 224 LTALSAERYCAIVNPIR------SHI--S--SKPLTIVTAFAIWVLAIILALPSALFSHVQPATTASNDTIYFCSPFPIE 293 (522)
Q Consensus 224 L~~ISidRy~aI~~Pl~------y~~--~--t~r~~~~~i~~iWl~s~l~alp~~~~~~~~~~~~~~~~~~~~C~~~~~~ 293 (522)
..+||++-|+.|.+|-. ... . .+..+..+..++|++...++. ...+. ..+......|......
T Consensus 92 ilaIAihT~l~v~~~~~~~~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~la~---i~~~~----~~Y~~~g~WCWi~~~~ 164 (201)
T PF11710_consen 92 ILAIAIHTFLIVFRPNWKRKRSKNVEGGLYPYRYWVWVIWILVPLLLASLAF---IGLGG----PGYGPAGAWCWIPSRY 164 (201)
T ss_pred HHHHHHHHHHHHhcCccccccccccccceEEeeeeeehHHHHHHHHHHHHHH---hcccc----CcccccCcEEEECCCc
Confidence 99999999999999921 111 0 111122222244444433332 22111 1122234789754332
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy17390 294 YGQQYKQTVVLCKFLAYYLGPLCVIACFYILMARHLELSTRN 335 (522)
Q Consensus 294 ~~~~~~~~y~~~~~i~~~~iPliiii~~Y~~I~~~lr~~~~~ 335 (522)
. .+.....-+--++-.+.+++.|+.|+..+||+.|+
T Consensus 165 ~------~~Rl~l~y~~~~~~~~~~i~iY~~if~~lrr~~~~ 200 (201)
T PF11710_consen 165 E------WYRLWLHYIWRFIIIFAIIIIYIAIFFYLRRRIRR 200 (201)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 1 12222233344555677889999999999997654
No 18
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=98.80 E-value=4.1e-06 Score=85.48 Aligned_cols=232 Identities=11% Similarity=0.061 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHhHHHHHHHHHHHhcchhhh---hhhhccc----ccccccccch
Q psy17390 135 KLTLTQFSELPFGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFT---STLYTLE----SWPYGPHICK 207 (522)
Q Consensus 135 ~~~ii~~ii~llgi~gN~lVi~vi~~~r~lr~~~~~li~nLAvaDll~~l~~lp~~---i~~~~~~----~~~~~~~~C~ 207 (522)
...++..+++++|++.++..++....++..|....+++....++.++.++.-+... +..+... +...+...|.
T Consensus 18 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~H~N~ril~~~~~~~~l~~~~~r~~~h~~~l~~~~~~~~~Cd~~~~~~~C~ 97 (324)
T PF10292_consen 18 LSLIFNLLLSIIAFPVIIYALWKIRNSKLFHFNTRILFIVHCFSFLIHCTGRIILHTYDLYNYFFPDDPCDMIPSTYRCF 97 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccchhHHH
Confidence 34455677788888888888888888888888889999999999998876333222 2222221 1223555688
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHhhccccccccCCchhhhhhHHHHHHHHHHHHHHHhhhccccccccCCCceEEe
Q psy17390 208 LSEATRDISIGVSVFTLTALSAERYCAIVNPIRSHISSKPLTIVTAFAIWVLAIILALPSALFSHVQPATTASNDTIYFC 287 (522)
Q Consensus 208 ~~~~l~~~~~~~Si~~L~~ISidRy~aI~~Pl~y~~~t~r~~~~~i~~iWl~s~l~alp~~~~~~~~~~~~~~~~~~~~C 287 (522)
.......++..++..+..+|++||++|-.+.-+|.+.++.-...++.+.|++++......+..... .+.....|
T Consensus 98 ~lR~~~~~~~~~~~~t~v~l~IER~iAT~~~~~YE~~~~~~Gi~l~~~qi~is~~~~~~~~~~~~~------~~~~~~yC 171 (324)
T PF10292_consen 98 ILRIPYNFGLFLVSFTTVSLVIERTIATFFSKSYEKSGKWLGILLAFFQILISLLILYFVYSDEDF------PNERMYYC 171 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHhhhhc------cCccceee
Confidence 888899999999999999999999999999988886555444455555566555533322221111 12234678
Q ss_pred cCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccCcchhHHHHHHHHHHHHHHHHHHHHh
Q psy17390 288 SPFPIEYGQQYKQTVVLCKFLAYYLGPLCVIACFYILMARHLELSTRNMPGELLGQSSQSRARKKVAKMVSVLASSTLAS 367 (522)
Q Consensus 288 ~~~~~~~~~~~~~~y~~~~~i~~~~iPliiii~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~k~~k~l~iiv~~f~lc 367 (522)
.....+. ...........++..++. .+.+..++++=+|.+++.....-..+-+.+...|..+++..++.+..+.
T Consensus 172 ~~~~~~~--~~~~~~~~~~~~~~~i~~----~i~f~~L~~~Nkk~r~~~~~~~LS~RYQl~ENl~slr~L~p~~~~~~i~ 245 (324)
T PF10292_consen 172 QASSSSS--PYRVNIPFIVILVLQILA----LILFRYLLRKNKKLRKQQKHSTLSERYQLEENLRSLRLLKPFIILSSIF 245 (324)
T ss_pred EEecCCC--chhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhccCCCcchHHhHHhHHHHHHHHHHHHHHHHHH
Confidence 7543331 111111111112212222 2222333333333222122222223344466677777776666665555
Q ss_pred hhHHHHHHHHHh
Q psy17390 368 TLSPYTSLVVCL 379 (522)
Q Consensus 368 ~w~P~~i~~l~~ 379 (522)
-.-+.+..+..
T Consensus 246 -~~~~~~~~~~~ 256 (324)
T PF10292_consen 246 -IFFYIFASIFL 256 (324)
T ss_pred -HHHHHHHHHHH
Confidence 44444444443
No 19
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=98.76 E-value=1.7e-06 Score=86.94 Aligned_cols=259 Identities=12% Similarity=0.050 Sum_probs=147.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhcc-CCCCchhHHhHHHHHHHHHHHhcchhhhhhhhcccc----------cccccccc
Q psy17390 138 LTQFSELPFGVLGNGTLVLIFARHK-NMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLES----------WPYGPHIC 206 (522)
Q Consensus 138 ii~~ii~llgi~gN~lVi~vi~~~r-~lr~~~~~li~nLAvaDll~~l~~lp~~i~~~~~~~----------~~~~~~~C 206 (522)
+++.+.+.+|++.|++.++.+.++. +.-+...+++.|-|+.|++.++............+. -.+|...|
T Consensus 3 i~~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~~~~q~R~i~~~~~~~~~~~GpC~~~~~~~C 82 (292)
T PF10317_consen 3 IYHPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISAFLTQPRIIPNGTSIAVISYGPCRYFGPWFC 82 (292)
T ss_pred EeHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcEEEEeeecceecCcHHH
Confidence 3457889999999999999887643 334778899999999999998754433322111111 12466788
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhccccccccCCchhhhhhHHHHHHHHHHHHHHHhhhcccccc-------cc
Q psy17390 207 KLSEATRDISIGVSVFTLTALSAERYCAIVNPIRSHISSKPLTIVTAFAIWVLAIILALPSALFSHVQPAT-------TA 279 (522)
Q Consensus 207 ~~~~~l~~~~~~~Si~~L~~ISidRy~aI~~Pl~y~~~t~r~~~~~i~~iWl~s~l~alp~~~~~~~~~~~-------~~ 279 (522)
.....+...+...|.+++.+--.-||..+.++-. ++++....+++.+..++...+...+........ .+
T Consensus 83 ~~~y~~~~~~~~~s~~~i~~sf~yRy~iL~~~~~----~~~~~i~~~~l~~~p~~~~~i~~~~~~~~~~~~~~~~~~~~p 158 (292)
T PF10317_consen 83 FFCYHIMLHFSIHSGWSIILSFYYRYYILRNPSP----SRKRIIFICILIYIPSFSMLIFFFFSPTDSEPVEAELNQFHP 158 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----chhHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHhCc
Confidence 8888888888889999999999999999987643 566777777788888777766544422211100 01
Q ss_pred CCCceEEecCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccCcchhHHHHHHHHHHHHH
Q psy17390 280 SNDTIYFCSPFPIEYGQQYKQTVVLCKFLAYYLGPLCVIACFYILMARHLELSTRNMPGELLGQSSQSRARKKVAKMVSV 359 (522)
Q Consensus 280 ~~~~~~~C~~~~~~~~~~~~~~y~~~~~i~~~~iPliiii~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~k~~k~l~i 359 (522)
+...... .......-......+......+..+...+++.++--+|.+.++++..+. +++.++..++.+|.+.+
T Consensus 159 ~y~~~~~-~i~G~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~R~ki~~~L~~~~~~~------S~~tk~~h~~lv~~Lt~ 231 (292)
T PF10317_consen 159 EYNLENY-SISGFSDISSPPSLINILIMTIPIFPIPIVIFFLRRKILKFLNKKSSSM------SERTKSMHRQLVKGLTI 231 (292)
T ss_pred ccccccc-eeeeecchhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhc------CHHHHHHHHHHHHHHHH
Confidence 1100000 0000001111122222222222233333445555666777776643221 23445566677777776
Q ss_pred HHHHHHHhhhHHHHHHHHHhhcccCCcchhhHHHHHHHHHHHhhhhccCChhhh
Q psy17390 360 LASSTLASTLSPYTSLVVCLGNISTGICSVVVHLAVNYNMMSPWCHSIVPPVED 413 (522)
Q Consensus 360 iv~~f~lc~w~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~lNPiIY 413 (522)
-...=+++ ..|-....+.......+ .. ..-........+-+.+||+++
T Consensus 232 Q~~lP~~~-~~p~~~~~~~~~~~~~~--~~---~~e~~~~~~~~~~~~~~P~it 279 (292)
T PF10317_consen 232 QALLPLFF-YIPGVIIYFLSQFTGYE--HP---FLEYLIFMLASLPPLIDPLIT 279 (292)
T ss_pred HHHhHHHH-HHHHHHHHHHHHHhccc--cH---HHHHHHHHHHHHHHHhchHhh
Confidence 66665655 45444433332221111 11 111233444556777999966
No 20
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=98.71 E-value=4.3e-08 Score=95.74 Aligned_cols=237 Identities=16% Similarity=0.216 Sum_probs=149.3
Q ss_pred CCCCchhHHhHHHHHHHHHHHhc-chhhhhhhhcccccccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhhccccc
Q psy17390 163 NMRSVPNTYILSLALGDLLVIIC-GVPFTSTLYTLESWPYGPHICKLSEATRDISIGVSVFTLTALSAERYCAIVNPIRS 241 (522)
Q Consensus 163 ~lr~~~~~li~nLAvaDll~~l~-~lp~~i~~~~~~~~~~~~~~C~~~~~l~~~~~~~Si~~L~~ISidRy~aI~~Pl~y 241 (522)
+..+|.+..+.+||+|++++.+. .+|-. .... +.-.+++.+|++..|+.-++-..|+.+.+.+|+-.-+.|. |-..
T Consensus 6 ~r~kp~dlIl~hLa~aN~lvLl~rGip~~-~~~~-~~~~~~d~gCK~v~Y~~RV~RglSictTCLLSvfQAItIS-P~~s 82 (265)
T PF03402_consen 6 HRLKPIDLILIHLALANILVLLSRGIPQT-MAFF-GWKFFDDIGCKIVFYIYRVARGLSICTTCLLSVFQAITIS-PSNS 82 (265)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHhhHHHH-HHHh-hcccCCCceeeeeeeehHHhchhhHHhhhHHHHHhhEEEe-cCCc
Confidence 34589999999999999999876 45533 2222 2224689999999999999999999999999995555443 4322
Q ss_pred c-----ccCCchhhhhhHHHHHHHHHHHHHHHhhhccccc--cccCCCceEEecCCCcccchhhHHHHHHHHHHHHHHHH
Q psy17390 242 H-----ISSKPLTIVTAFAIWVLAIILALPSALFSHVQPA--TTASNDTIYFCSPFPIEYGQQYKQTVVLCKFLAYYLGP 314 (522)
Q Consensus 242 ~-----~~t~r~~~~~i~~iWl~s~l~alp~~~~~~~~~~--~~~~~~~~~~C~~~~~~~~~~~~~~y~~~~~i~~~~iP 314 (522)
+ ...++.....+.+.|++-.++.....+.....+. ..+.......|.....+. .....+. ....+--++.
T Consensus 83 ~w~~lK~k~pk~i~~~~~~~Wilnlli~~~~~~~~~~~~n~t~~~~~~~~~yCs~~~~~~--~~~~~~~-~~~~~~D~~f 159 (265)
T PF03402_consen 83 RWAELKVKAPKYIGPSCLFCWILNLLININVLVYIIATPNSTNNNFTYSLGYCSSVPISY--IVSSLFA-TLLSFRDVLF 159 (265)
T ss_pred hhhhhhhhcCCccccHHHHHHHHHHhhhcceeEEEEecCccccCceeecCCeEEEEecch--hhhhhhh-hHHHhhHHHH
Confidence 2 2556667777888999988876543322111110 111111224675432221 1111222 2223445677
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCc-cCcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcccCCcchhhHHH
Q psy17390 315 LCVIACFYILMARHLELSTRNMPGEL-LGQSSQSRARKKVAKMVSVLASSTLASTLSPYTSLVVCLGNISTGICSVVVHL 393 (522)
Q Consensus 315 liiii~~Y~~I~~~lr~~~~~~~~~~-~~~~~~~~~~~k~~k~l~iiv~~f~lc~w~P~~i~~l~~~~~~~~~~~~~~~~ 393 (522)
+.+|+..-+-|...+.||+++.+.-. .+...+...|.|+++++++++..|+..+++- .++.......... . +
T Consensus 160 vgLM~~aSgyMV~~L~RH~q~VqhIhs~~~s~r~SpE~RAtktILlLVs~FV~fY~l~-si~~~~~~~~~~~--~----~ 232 (265)
T PF03402_consen 160 VGLMIWASGYMVFLLYRHHQQVQHIHSSSLSPRSSPETRATKTILLLVSTFVSFYGLS-SILFIYLTSFKNS--P----W 232 (265)
T ss_pred HHHHHhhhhhheeeeeecccccccCcCCCCCCCCChhHHHhCeEeeHHHHHHHHHhHH-HHHHHHHHHhcCC--c----c
Confidence 78889999999999999888766543 3344556789999999999999999885544 3333322221111 1 1
Q ss_pred HHHHHHHHhhhhccCChhh
Q psy17390 394 AVNYNMMSPWCHSIVPPVE 412 (522)
Q Consensus 394 ~~~~~~~l~~~ns~lNPiI 412 (522)
..+...+++.+-+.+-|++
T Consensus 233 ~~~~~~~ls~cfptisPfv 251 (265)
T PF03402_consen 233 LLNISVFLSSCFPTISPFV 251 (265)
T ss_pred eeEHHHHHhHHhHhhChHH
Confidence 1234556777778888884
No 21
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=98.38 E-value=5e-05 Score=75.04 Aligned_cols=114 Identities=10% Similarity=-0.082 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHhHHHHHHHHHHHhcchhhhhhhhccc--cccc-ccccchhhh
Q psy17390 134 LKLTLTQFSELPFGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLE--SWPY-GPHICKLSE 210 (522)
Q Consensus 134 ~~~~ii~~ii~llgi~gN~lVi~vi~~~r~lr~~~~~li~nLAvaDll~~l~~lp~~i~~~~~~--~~~~-~~~~C~~~~ 210 (522)
.+..++..+...+..+.|...+..+..+|+.+++.-.++--..+.|.+.+....+..+...... .... .+..=-..+
T Consensus 6 ~iv~~i~i~~s~~~~~iN~~lL~~if~~Kk~kk~~l~LfY~Rf~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~ 85 (273)
T PF10316_consen 6 IIVSIIGIIFSIITCLINFYLLYSIFYSKKKKKPDLSLFYFRFAIDVFYGFSVFIYLIYYILFSLFPEFLDYKNLIFYIG 85 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCEEeeHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhccccEEeehh
Confidence 3455666777888999999999998877775566667777789999999987655544333221 1111 111222234
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhccccccccCCc
Q psy17390 211 ATRDISIGVSVFTLTALSAERYCAIVNPIRSHISSKP 247 (522)
Q Consensus 211 ~l~~~~~~~Si~~L~~ISidRy~aI~~Pl~y~~~t~r 247 (522)
................||+||.+|+..|..|++..++
T Consensus 86 ~p~~~~~~iR~~l~~~Ia~dR~~A~~fPI~y~~~r~k 122 (273)
T PF10316_consen 86 WPSSNLGSIRSILALIIALDRVFAVYFPIFYHNYRKK 122 (273)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCcc
Confidence 4444556677888999999999999999998864444
No 22
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=98.33 E-value=4.6e-05 Score=76.57 Aligned_cols=184 Identities=13% Similarity=0.116 Sum_probs=100.4
Q ss_pred hHHhHHHHHHHHHHHhcchhhhhhhhccccc-----------ccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhhc
Q psy17390 169 NTYILSLALGDLLVIICGVPFTSTLYTLESW-----------PYGPHICKLSEATRDISIGVSVFTLTALSAERYCAIVN 237 (522)
Q Consensus 169 ~~li~nLAvaDll~~l~~lp~~i~~~~~~~~-----------~~~~~~C~~~~~l~~~~~~~Si~~L~~ISidRy~aI~~ 237 (522)
.-.+..||+||++.++-.+.-..++....+. ..+...|........++..++.+-+.+-|+|=|+.+.+
T Consensus 68 ~rIl~~la~aDlLaclGVivRS~vWl~~p~~~~s~s~~~~~d~wp~afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~~~ 147 (405)
T PF02101_consen 68 RRILFWLAVADLLACLGVIVRSSVWLGFPNFIDSISDVNGTDIWPAAFCVGSSMWIQLFYSATFWWTFCYAVDVYLVIRR 147 (405)
T ss_pred chhHHHHHHHHHHhhhhHHHHhhhhhcCCcccccccCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeec
Confidence 5688899999999987444433333322211 12345798888777788899999999999999998854
Q ss_pred cccccccCCchhhhhhHHHHHHHHHHHHHHHhhhccccccccCCCceEEecCCCcccchhhHHHHHHHHHHHHHHHHHHH
Q psy17390 238 PIRSHISSKPLTIVTAFAIWVLAIILALPSALFSHVQPATTASNDTIYFCSPFPIEYGQQYKQTVVLCKFLAYYLGPLCV 317 (522)
Q Consensus 238 Pl~y~~~t~r~~~~~i~~iWl~s~l~alp~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~y~~~~~i~~~~iPlii 317 (522)
-- .+....+-=..+|.++.++..--+.....- +...|...... . +-. -+.-.+|+++
T Consensus 148 ~a-----g~~~~~lYH~~aWgl~~lL~~~Gl~~Ly~P--------s~~~Ce~~l~~---a------lph-YvttY~Plll 204 (405)
T PF02101_consen 148 SA-----GRSTIWLYHMMAWGLPALLCAEGLAMLYYP--------SISRCESGLEH---A------LPH-YVTTYIPLLL 204 (405)
T ss_pred cC-----CCcchhHHHHHHHHHHHHHHHhccceeecC--------CHHhhhhhhhh---c------chh-HHHHHHHHHH
Confidence 21 112233455678998888775443322211 11235421110 0 011 1123344444
Q ss_pred HHH----HHHHHHHHHHhhccCCCCCccCcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy17390 318 IAC----FYILMARHLELSTRNMPGELLGQSSQSRARKKVAKMVSVLASSTLASTLSPYTSLVVC 378 (522)
Q Consensus 318 ii~----~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~k~~k~l~iiv~~f~lc~w~P~~i~~l~ 378 (522)
.++ .|.+..+++-..-+.+.+.-. .+.++....+-+..+.|.++|.+| |+|-.|--++
T Consensus 205 VlvaNPiLy~~a~~~V~~~lk~r~g~yT--~~ER~l~~~IK~kFf~I~lVF~iC-WlpNIINg~L 266 (405)
T PF02101_consen 205 VLVANPILYIKAVRAVASLLKGRQGIYT--ENERRLGAQIKIKFFKIMLVFYIC-WLPNIINGSL 266 (405)
T ss_pred HHHhccHHHHHHHHHHHHHHhhcccccc--HHHHHHHHHHHHHHHHHHHHHHHH-hhhhhHhHHH
Confidence 443 455444444433332211111 122222233334567788889999 9998775543
No 23
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=98.27 E-value=0.00013 Score=73.66 Aligned_cols=265 Identities=11% Similarity=-0.029 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHhH----HHHHHHHHHHhcchhhhhhhhcccccccc------cc
Q psy17390 135 KLTLTQFSELPFGVLGNGTLVLIFARHKNMRSVPNTYIL----SLALGDLLVIICGVPFTSTLYTLESWPYG------PH 204 (522)
Q Consensus 135 ~~~ii~~ii~llgi~gN~lVi~vi~~~r~lr~~~~~li~----nLAvaDll~~l~~lp~~i~~~~~~~~~~~------~~ 204 (522)
.+...+-++++++++.|.+.++.+..+....+...++++ ...++|+-.+++.-|..+.-...| +-.| +.
T Consensus 10 ~li~~~~~ig~iS~~~n~~~iyLi~fks~k~~~fry~ll~~Qi~~~l~di~~t~L~qpipLfP~~ag-y~~G~l~~~f~i 88 (303)
T PF10327_consen 10 WLINYYHIIGVISFILNSLGIYLIIFKSPKLDNFRYYLLYFQISCTLTDIHLTFLMQPIPLFPIPAG-YCVGFLARYFGI 88 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeEEEecCCccchhhHHHHHHHHHHHhhhhhhhhccchhhcceeEE-EEEeehhhcCCC
Confidence 455667888999999999999987654433333444443 456789999887777766544432 2222 12
Q ss_pred cchhhhhhhhhhhHHHHHHHHHHHHHHHHHhhccccccccCCchhhhhhHHHHHHHHHHHHHHHhhhccccccccC-CCc
Q psy17390 205 ICKLSEATRDISIGVSVFTLTALSAERYCAIVNPIRSHISSKPLTIVTAFAIWVLAIILALPSALFSHVQPATTAS-NDT 283 (522)
Q Consensus 205 ~C~~~~~l~~~~~~~Si~~L~~ISidRy~aI~~Pl~y~~~t~r~~~~~i~~iWl~s~l~alp~~~~~~~~~~~~~~-~~~ 283 (522)
.+.....+..+.....+-.++.--+-|+-+|.+..+.+..++..-.....+..+..++.++.........+..... ..+
T Consensus 89 ~~h~~~~i~~~l~~~q~~~L~~CF~~KHQaIa~i~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~eeq~~yI~~n 168 (303)
T PF10327_consen 89 SSHYLMTIWIFLFIFQIESLVICFLRKHQAIARILSKHVLPKWFYIFFYFFCILFPFFIFICFYFSGMSREEQMEYIREN 168 (303)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcCcHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Confidence 2333333444455555666666678899999998876666665555555555555555554433322211111000 001
Q ss_pred eEEecCCC------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccCcchhHHHHHHHHHHH
Q psy17390 284 IYFCSPFP------IEYGQQYKQTVVLCKFLAYYLGPLCVIACFYILMARHLELSTRNMPGELLGQSSQSRARKKVAKMV 357 (522)
Q Consensus 284 ~~~C~~~~------~~~~~~~~~~y~~~~~i~~~~iPliiii~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~k~~k~l 357 (522)
...|.... .-.+............+++..+-.+++.+++..+++.+++.+++.. ++..++.|++.+-+
T Consensus 169 yP~~~~~F~~l~nf~iY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~L~~~k~~iS------~~ty~kHk~av~SL 242 (303)
T PF10327_consen 169 YPEYLSWFSSLPNFAIYDFNPWFIFFFILAFFGGFLCFVIFIFLTIDMFRMLKKLKKKIS------KQTYQKHKEAVRSL 242 (303)
T ss_pred CCchhHHHhcCCCEEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------HHHHHHHHHHHHHH
Confidence 11222111 1112223344445555666677788888899999999988765432 35567788888888
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhhcccCCcchhhHHHHHHHHHHHhhhhccCChhh
Q psy17390 358 SVLASSTLASTLSPYTSLVVCLGNISTGICSVVVHLAVNYNMMSPWCHSIVPPVE 412 (522)
Q Consensus 358 ~iiv~~f~lc~w~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~lNPiI 412 (522)
.+-.++-.+| ..|-.++.+..... .+.... ..........++|.+|-++
T Consensus 243 i~Q~~~~~i~-~~P~~~~~~~~~~~-~~~~q~----i~~~~~~~f~~HS~~n~iv 291 (303)
T PF10327_consen 243 IAQFATSSIC-ILPPFIFVVVVIFE-FEDAQV----ISEICLAIFSSHSSVNMIV 291 (303)
T ss_pred HHHHHHHHHH-HHHHHHhhhhheec-CCCcHH----HHHHHHHHHHHhhHhhhee
Confidence 8888888888 46665555443221 121122 2233444455577777663
No 24
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=98.25 E-value=7.4e-07 Score=90.19 Aligned_cols=261 Identities=10% Similarity=0.043 Sum_probs=151.4
Q ss_pred HHHHHHHHHHhHHHHHHhhhc-cCCCCchhHHhHHHHHHHHHHHhcchhhhhhhhc----------ccccccccccchhh
Q psy17390 141 FSELPFGVLGNGTLVLIFARH-KNMRSVPNTYILSLALGDLLVIICGVPFTSTLYT----------LESWPYGPHICKLS 209 (522)
Q Consensus 141 ~ii~llgi~gN~lVi~vi~~~-r~lr~~~~~li~nLAvaDll~~l~~lp~~i~~~~----------~~~~~~~~~~C~~~ 209 (522)
.+.++++++.|++.+..+.++ ++.-..-.+++...|+.|++.+++-....-..+. .+.+..+....+..
T Consensus 6 ~~~~~~s~~~N~~Li~Li~~~s~k~~G~Yk~Lm~~fs~~~i~fs~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (307)
T PF10326_consen 6 YIGFVLSLFLNSLLIYLILTKSPKSLGSYKYLMIYFSIFEIIFSILDFLVQPIIHSYGSSFVVFSDSGPFFLSKSIGQIL 85 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEehhHHHHHHHHHHHHHHHhceeecCCeeEEEeecccccccchheeeh
Confidence 566788999999999988754 3434567889999999999998754322211111 12233445556666
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHhhccccccccCCchhhhhhHHHHHHHHHHHHHHHhhhcccccc-----------c
Q psy17390 210 EATRDISIGVSVFTLTALSAERYCAIVNPIRSHISSKPLTIVTAFAIWVLAIILALPSALFSHVQPAT-----------T 278 (522)
Q Consensus 210 ~~l~~~~~~~Si~~L~~ISidRy~aI~~Pl~y~~~t~r~~~~~i~~iWl~s~l~alp~~~~~~~~~~~-----------~ 278 (522)
..+...+...++..++.==+.||.+|++|-+-+....++....++..-+.++..+....+.....+.. .
T Consensus 86 ~~~y~~~f~~~~~llaihFiYRY~av~~~~~l~~f~~~~~~~w~~~~~~~~~~W~~~~~~~~~~~~~~~~~lr~~~~~~y 165 (307)
T PF10326_consen 86 LAIYCGCFGMSFSLLAIHFIYRYWAVCRPKKLRYFSGWRFIIWFLIPIIFGIIWFLLVYFFFSPDEESDEYLREELLENY 165 (307)
T ss_pred hhhhhhhHHHHHHHHHhHhhhheeeeccchhhccccccceeeeehhhhhhcccceEEEeehhccchhhhhhhcccccccc
Confidence 67777777888888888889999999999875555555444443333333333222211111111100 0
Q ss_pred cCCCceEE---ecCC--Ccccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccCcchhHHHHH
Q psy17390 279 ASNDTIYF---CSPF--PIEYG--QQYKQTVVLCKFLAYYLGPLCVIACFYILMARHLELSTRNMPGELLGQSSQSRARK 351 (522)
Q Consensus 279 ~~~~~~~~---C~~~--~~~~~--~~~~~~y~~~~~i~~~~iPliiii~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~ 351 (522)
+.+.+... .... ..+.+ ..+..............+.+.++++|-.++++++++..+.. +++.++-++
T Consensus 166 ~~~i~~~~y~~~~~y~~~~nG~~~~~~~~~~~~~~~~~im~~s~~iii~cg~~~~~~i~~~~~~~------S~~~~~lq~ 239 (307)
T PF10326_consen 166 GLDIDEIPYVGFVYYPKDENGSKELNWPSFIGMLIMCIIMSISFFIIIYCGIKIYKKIKKLSSIM------SSKTRKLQK 239 (307)
T ss_pred CCCccceeEEEEEEeeeccCCceeechhhheeeeecchhHHhHHHHHHHHHhhhHHHHhcccccc------ChhhHHHHH
Confidence 00000000 0001 11111 22333444445556677889999999999999996543321 345667777
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHhhcccCCcchhhHHHHHHHHHHHhhhhccCChhhh
Q psy17390 352 KVAKMVSVLASSTLASTLSPYTSLVVCLGNISTGICSVVVHLAVNYNMMSPWCHSIVPPVED 413 (522)
Q Consensus 352 k~~k~l~iiv~~f~lc~w~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~lNPiIY 413 (522)
+..+.+.+-+++=+++-..|..+..+.- ..+ ........+......+.+++||++-
T Consensus 240 QLf~aLv~Qt~iP~i~~~~P~~~~~~~p-~~~-----i~~~~~~~~~~~~~~~yP~iDpl~~ 295 (307)
T PF10326_consen 240 QLFKALVIQTIIPFIFMYIPVFIVFILP-FFG-----IDLGFFSNIISILISLYPAIDPLPV 295 (307)
T ss_pred HHHHHHHHHhhhhheeeecchhheeeee-ccC-----CCCCccccHhhhhEEEEeehhhhee
Confidence 8888887776665555578877665432 111 1112223445556667888999854
No 25
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=98.21 E-value=8.6e-05 Score=73.74 Aligned_cols=208 Identities=11% Similarity=0.059 Sum_probs=119.9
Q ss_pred HHHHHHHHHHhHHHHHHhhhccC--C-CCchhHHhHHHHHHHHHHHhcchhh-hhhhhcccc-------cccccccchhh
Q psy17390 141 FSELPFGVLGNGTLVLIFARHKN--M-RSVPNTYILSLALGDLLVIICGVPF-TSTLYTLES-------WPYGPHICKLS 209 (522)
Q Consensus 141 ~ii~llgi~gN~lVi~vi~~~r~--l-r~~~~~li~nLAvaDll~~l~~lp~-~i~~~~~~~-------~~~~~~~C~~~ 209 (522)
.+-++.+++.+..+++++.++++ . +++.+.+..--++.|++.-+...+. .+....... .........+.
T Consensus 5 ~~Ygi~s~~l~~~~~~~i~~~~~~~~~~~sFy~l~~~d~~~ni~~~ln~~~~~Rl~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (275)
T PF02118_consen 5 LIYGIPSLILYIFILYVIWKSKKKSYFKSSFYRLYIMDLIMNILTYLNTWITLRLPSYTPPFCPFFLPFFENPPFFLNIF 84 (275)
T ss_pred hhHHHHHHHHHHHHHHHHHHhccccccCCccHHHHHHHhHHHHHHHHHHHHHHHhccccCccchhHHHHHcCCcHHHHHH
Confidence 34466777888889998888777 4 5666666666666666654433222 222220000 11233456667
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHhhccccccccCCchhhhhhHHHHHHHHHHHHHHHhhhccccccccCCCceEEecC
Q psy17390 210 EATRDISIGVSVFTLTALSAERYCAIVNPIRSHISSKPLTIVTAFAIWVLAIILALPSALFSHVQPATTASNDTIYFCSP 289 (522)
Q Consensus 210 ~~l~~~~~~~Si~~L~~ISidRy~aI~~Pl~y~~~t~r~~~~~i~~iWl~s~l~alp~~~~~~~~~~~~~~~~~~~~C~~ 289 (522)
.++...+..+...+...|+++|+-+|..|.++.+.-+|....+++++.++.+....+.+......... ++.....-..
T Consensus 85 ~~l~~~~~~~Q~~~~~~is~nR~t~v~~p~~~~~~W~~~~~~~i~~i~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 162 (275)
T PF02118_consen 85 YFLQYYFAYVQYLSTILISLNRFTSVLFPIRYEKFWKRYYWIIIIIIFLLPFSFTWNIFISPTYVVYD--NGGFSYSYND 162 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhhheeeeeehhHHHHHHHHccccEEEEE--CCceEEEEEe
Confidence 77888888999999999999999999999998874445555566666666665544444322222211 1111111111
Q ss_pred CCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccCcchhHHHHHHHHHHHHHHHHHHHHh
Q psy17390 290 FPIEYGQQYKQTVVLCKFLAYYLGPLCVIACFYILMARHLELSTRNMPGELLGQSSQSRARKKVAKMVSVLASSTLAS 367 (522)
Q Consensus 290 ~~~~~~~~~~~~y~~~~~i~~~~iPliiii~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~k~~k~l~iiv~~f~lc 367 (522)
.. ..... .......+++-.++.++++....+++++.++ +.++.+++..+..++..+++.+.
T Consensus 163 -~~----~~~~~--~~~~~~~~i~~~ii~i~~~~~~~~~l~~~~~----------~~~~~er~L~~is~~~~~~~~~~ 223 (275)
T PF02118_consen 163 -TV----SWASL--SIFSLIYFIIIIIITIITNIITYRRLRKLSK----------RIKSVERNLTIISFIISFVQLLI 223 (275)
T ss_pred -cc----chhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----------hhhHHHHHHHHHHHHHHHHHHHH
Confidence 11 01111 1222333455555666777777777776532 33455677777766666666655
No 26
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=98.08 E-value=0.00039 Score=70.98 Aligned_cols=259 Identities=12% Similarity=0.073 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhccCCCCch-hHHhHHHHHHHHHHHhcchhhhhh----hh--ccc--ccccccc
Q psy17390 134 LKLTLTQFSELPFGVLGNGTLVLIFARHKNMRSVP-NTYILSLALGDLLVIICGVPFTST----LY--TLE--SWPYGPH 204 (522)
Q Consensus 134 ~~~~ii~~ii~llgi~gN~lVi~vi~~~r~lr~~~-~~li~nLAvaDll~~l~~lp~~i~----~~--~~~--~~~~~~~ 204 (522)
.+-.++..++.++++++....+-.+.++.-..+.+ .+++.+|..+++=...... ..+. .. ..+ +..+...
T Consensus 21 ~~~~~~~~~~~~~t~~~s~~Ai~~l~~ksif~~sTr~LL~~~l~~a~~Hq~~y~~-~~~~~lyrsf~~~~dpC~i~f~~~ 99 (328)
T PF02117_consen 21 RINQIFILIIIIITFIFSVFAIKKLWKKSIFSNSTRILLISNLLFANIHQISYAI-IQIWSLYRSFFYSDDPCSILFTSS 99 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCCeeeEeecC
Confidence 34445566677788888888888887776666544 6667777777655444221 1111 11 111 2345667
Q ss_pred cchhhhhhhhhhhHHHHHHHHHHHHHHHHHhhccccccccCCchhhhhhHHHHHHHHHHHHHHHhhhccccccccCCCce
Q psy17390 205 ICKLSEATRDISIGVSVFTLTALSAERYCAIVNPIRSHISSKPLTIVTAFAIWVLAIILALPSALFSHVQPATTASNDTI 284 (522)
Q Consensus 205 ~C~~~~~l~~~~~~~Si~~L~~ISidRy~aI~~Pl~y~~~t~r~~~~~i~~iWl~s~l~alp~~~~~~~~~~~~~~~~~~ 284 (522)
-|.....+..++....++.-+++++||.+|-..|-.+++.+......+.+++-+.++... .+. ..+.+.++..
T Consensus 100 eC~~~~~~~~~~~~~~~~~q~aL~idRl~at~~~~~~~~~~~~~g~~l~i~~li~s~~~~--~~i-----~~~~p~~gyv 172 (328)
T PF02117_consen 100 ECFPYYYFYYFTNSGMIFIQFALTIDRLLATFFPKYYSKKSYIIGIILSILVLILSFITG--FII-----YWDDPLDGYV 172 (328)
T ss_pred ceeeeehHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHHHe--eEE-----EeCCCCcccc
Confidence 899989999999999999999999999999998865543222222222222222222211 111 1122233445
Q ss_pred EEecCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccCcchhHHHHHHHHHHHHHHHHHH
Q psy17390 285 YFCSPFPIEYGQQYKQTVVLCKFLAYYLGPLCVIACFYILMARHLELSTRNMPGELLGQSSQSRARKKVAKMVSVLASST 364 (522)
Q Consensus 285 ~~C~~~~~~~~~~~~~~y~~~~~i~~~~iPliiii~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~k~~k~l~iiv~~f 364 (522)
..|...+........ .+.. +.+.+.++ -+++...+++.-+|..++ ..-..+.+=+.+.....++.+..+.++-
T Consensus 173 ~~C~~~p~~s~~~~~-~~~~----~~~~l~i~-~~i~s~~l~~~nkk~e~~-~~f~v~~Ry~~~Eni~ST~aI~~i~~~Q 245 (328)
T PF02117_consen 173 PSCFYPPKNSVNRFN-IFLI----VCFVLTIF-NLIVSIFLMYYNKKKEKK-TRFDVNSRYQKRENINSTKAICIISISQ 245 (328)
T ss_pred ccccCCChhHHHHHH-HHHH----HHHHHHHH-HHHHHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789865544322211 1111 11111111 112233333333433321 1111122233355667788888888888
Q ss_pred HHhhhHHHHHHHHHhhcccCCcchhhHHHHHHHHHHHhhhhccC
Q psy17390 365 LASTLSPYTSLVVCLGNISTGICSVVVHLAVNYNMMSPWCHSIV 408 (522)
Q Consensus 365 ~lc~w~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~l 408 (522)
++| ..-|.+...+.............+....+....++.+-++
T Consensus 246 ~i~-~~iys~~v~~l~~~~~~i~~~~~~~~~~~~Yt~py~~l~l 288 (328)
T PF02117_consen 246 FIC-MFIYSFGVFILRNFRSSISPETFHNIVLWFYTFPYAALSL 288 (328)
T ss_pred HHH-HHHHHHHHHHHHHhhccCCHHHHHHHHHHHhcccHHHHHH
Confidence 887 5666555544434444444444444444444455544433
No 27
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=98.03 E-value=0.0014 Score=63.14 Aligned_cols=261 Identities=11% Similarity=0.078 Sum_probs=151.8
Q ss_pred HhHHHHHHhhhccCCCCchhHHhHHHHHHHHHHHhc----chhhhhhhhcccccccccccchhhhhhhhhhhHHHHHHHH
Q psy17390 150 GNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIIC----GVPFTSTLYTLESWPYGPHICKLSEATRDISIGVSVFTLT 225 (522)
Q Consensus 150 gN~lVi~vi~~~r~lr~~~~~li~nLAvaDll~~l~----~lp~~i~~~~~~~~~~~~~~C~~~~~l~~~~~~~Si~~L~ 225 (522)
|-.+|+.++..++=++-+..+|+..|.++-++.... .+|-.+......+..-+ ..-.+..+...++-++-.++=.
T Consensus 31 ~~Flv~~i~lW~~Fk~m~ffwFl~qlt~s~fi~S~lNl~inVPatlfsl~t~~~~~s-~~f~~~Sy~idf~h~siLfsNl 109 (305)
T PF04789_consen 31 GAFLVLSIILWSHFKPMKFFWFLTQLTISVFIISSLNLLINVPATLFSLITKEFVQS-ELFIFMSYLIDFCHYSILFSNL 109 (305)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhheEeCcHHHHHhhhHHHhcc-chhhHHHHHHHHHHHHHHHHHH
Confidence 333444444444444567899999999999888754 44555544444433333 3556677788888888999999
Q ss_pred HHHHHHHHHhhcccc-ccccCCchhhhhhHHHHHHHHHHHHHHHhhhccccccccCCCceEEecCCCcccchhhHHHHHH
Q psy17390 226 ALSAERYCAIVNPIR-SHISSKPLTIVTAFAIWVLAIILALPSALFSHVQPATTASNDTIYFCSPFPIEYGQQYKQTVVL 304 (522)
Q Consensus 226 ~ISidRy~aI~~Pl~-y~~~t~r~~~~~i~~iWl~s~l~alp~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~y~~ 304 (522)
.||+.|....-+-.. ++...+.-..+.+..+|++++..-.......-.+.+......-.-.|.......+........+
T Consensus 110 viaIqR~fVFFfr~~t~~~F~s~~iyiWL~~vWils~~v~~~l~~~nC~Y~y~~~~~~y~L~C~~~~~~v~~~~P~~Iqi 189 (305)
T PF04789_consen 110 VIAIQRFFVFFFRNLTDKVFESPVIYIWLLLVWILSIGVVYSLMSNNCRYRYNKWSKHYQLNCETCNSVVDISPPRGIQI 189 (305)
T ss_pred HHHHhhheeeeehhhhhhhccchHHHHHHHHHHHHHHHHHHHHHhCCCeeecccccccEEEEcCCCCeeEeeCCCCchhH
Confidence 999999877663322 3336777888999999999998877665544444443323333456765322211122223344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccCcchhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcccC
Q psy17390 305 CKFLAYYLGPLCVIACFYILMARHLELSTRNMPGELLGQSSQSRARKKVAKMVSVLASSTLASTLSPYTSLVVCLGNIST 384 (522)
Q Consensus 305 ~~~i~~~~iPliiii~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~k~~k~l~iiv~~f~lc~w~P~~i~~l~~~~~~~ 384 (522)
.-.++-+.+|+++ .+.|+.|..++-..++ ....+.|.+.+|-.+.+-++|- .+..++.+.....
T Consensus 190 iE~ilQ~~IPi~I-l~iYiAIIiKI~~MKk---------ssLnK~Ei~ILKQAifIFvlFQ----~ss~VFl~~qt~~-- 253 (305)
T PF04789_consen 190 IEIILQFGIPIFI-LVIYIAIIIKIIKMKK---------SSLNKNEITILKQAIFIFVLFQ----ASSCVFLLCQTFK-- 253 (305)
T ss_pred HHHHHHHhHHHHH-HHHHHHHHHHHHHHhh---------ccCCchhHHHHHHHHHHHHHHH----HHHHHHHhheeee--
Confidence 5567788899754 5567766655544332 2344567788887765554444 4445555443221
Q ss_pred CcchhhHHHHHHHHHHHhhhhccCChhhhHHhHHHHhHHHHHHhhhhcCccc
Q psy17390 385 GICSVVVHLAVNYNMMSPWCHSIVPPVEDSTLALALGFHQIQSFTKLSSVYT 436 (522)
Q Consensus 385 ~~~~~~~~~~~~~~~~l~~~ns~lNPiIY~~iy~~~~~~~~~~frk~~~~~~ 436 (522)
.....-.....+...+-.+..+.-|.. +-... +|.||....+.
T Consensus 254 -~~~~tAFlIKR~iNT~ei~agaatP~f-------fffTs-~eirk~~s~kv 296 (305)
T PF04789_consen 254 -FNVATAFLIKRIINTMEIFAGAATPCF-------FFFTS-KEIRKLVSSKV 296 (305)
T ss_pred -ecchHHHHHHHHHHHHHHHhhccCCeE-------EEEeh-HHHHHHHHhhc
Confidence 111122222233333444456677762 22222 77788776554
No 28
>KOG4193|consensus
Probab=98.02 E-value=0.00039 Score=75.90 Aligned_cols=257 Identities=12% Similarity=0.031 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHhHHHHHHHHHHHhcchhhhhhhhcccccccccc--cchhhhhhh
Q psy17390 136 LTLTQFSELPFGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPH--ICKLSEATR 213 (522)
Q Consensus 136 ~~ii~~ii~llgi~gN~lVi~vi~~~r~lr~~~~~li~nLAvaDll~~l~~lp~~i~~~~~~~~~~~~~--~C~~~~~l~ 213 (522)
..++-.+-+.+++++=.+.+++.+.-|++++..+....||+++=++.-++ .+.+.|..+.. .|...+++.
T Consensus 322 l~~i~~VG~~iSlvcL~lti~ty~~~~~l~~~~~~i~~~l~~~L~l~~l~--------fL~~~~~~~~~~~~C~~~a~ll 393 (610)
T KOG4193|consen 322 LDILSTVGCIISLVCLLLTIATYLLFRKLQNDRTKIHINLCLCLFLAELL--------FLLGIDRTSTSVVLCIAAAILL 393 (610)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH--------HhcccccccCcccccHHHHHHH
Confidence 33333444444555555555555555556554477788888872222221 11133332222 799999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhccccccccCCchhhhhhHHHHHHHHHHHHHHHhhhccccccccCCCceEEecCCCcc
Q psy17390 214 DISIGVSVFTLTALSAERYCAIVNPIRSHISSKPLTIVTAFAIWVLAIILALPSALFSHVQPATTASNDTIYFCSPFPIE 293 (522)
Q Consensus 214 ~~~~~~Si~~L~~ISidRy~aI~~Pl~y~~~t~r~~~~~i~~iWl~s~l~alp~~~~~~~~~~~~~~~~~~~~C~~~~~~ 293 (522)
.++..+..+-+..++++=|+.++.=++. ..+++........|...+++...........+. .+.....|......
T Consensus 394 hff~LaaF~Wm~leg~hl~~~~v~vf~~--~~~~~~l~~~~~gwg~Pavvv~Isa~~~~~~~~---~~~~~~~CWl~~~~ 468 (610)
T KOG4193|consen 394 HFFFLAAFFWMLLEGFHLYLLLVEVFRS--RPRRRKLLYSLYGWGVPAVVVGVSALVDPDLEG---QYGTPRVCWLDTQN 468 (610)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccchHHHHHHHHHhhhhHHHHhheeEEeccCcc---ccccCCceEEecCC
Confidence 9999999999999999999966543322 344454555468999988877665544333321 11122348754332
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccCcchhHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy17390 294 YGQQYKQTVVLCKFLAYYLGPLCVIACFYILMARHLELSTRNMPGELLGQSSQSRARKKVAKMVSVLASSTLASTLSPYT 373 (522)
Q Consensus 294 ~~~~~~~~y~~~~~i~~~~iPliiii~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~k~~k~l~iiv~~f~lc~w~P~~ 373 (522)
.. +..|+.|+.+|+.+++.++...-++-.+...... ...++....+..+..+.+..+.-+. |.--
T Consensus 469 ~~------------~~~F~GPv~~ii~~Ni~~Fv~t~~~l~~~~~~~~-~~~~~~~~~~~~~~~l~L~~lLGlT-W~fg- 533 (610)
T KOG4193|consen 469 GF------------IWSFLGPVTLIILVNIVMFVVTLKKLLRRLSKLQ-PIASKLENISLIRSALALLFLLGLT-WIFG- 533 (610)
T ss_pred ce------------EEEEehHHHHHHHHHHHHHHHHHHHHhhcccccC-cchhhHHHHHHHHHHHHHHHHHHHH-HHHH-
Confidence 11 1116677777777775554433322211111110 1111222225566666666666666 5321
Q ss_pred HHHHHhhcccCCcchhhHHHHHHHHHHHhhhhccCChhhhHHhHHHHhHHHHHHhhhhcC
Q psy17390 374 SLVVCLGNISTGICSVVVHLAVNYNMMSPWCHSIVPPVEDSTLALALGFHQIQSFTKLSS 433 (522)
Q Consensus 374 i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~lNPiIY~~iy~~~~~~~~~~frk~~~ 433 (522)
++.+.. + ... .+..+...+|+.-==+|+ +++...++..|++.+|.+|
T Consensus 534 i~s~~~-----~-~~~------v~~YlFti~NalQG~fIF-i~~cll~~kvr~~~~k~~~ 580 (610)
T KOG4193|consen 534 IFSWLP-----G-TSV------VFAYLFTIFNALQGVFIF-IFHCLLRKKVRKEYRKWLC 580 (610)
T ss_pred HHHHhc-----c-cch------HHHHHHHHHHHhhhhHhh-HhhhhhhHHHHHHHHHHhc
Confidence 221111 1 111 223333344554443444 3445555666555565555
No 29
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=98.00 E-value=2.3e-06 Score=83.39 Aligned_cols=130 Identities=13% Similarity=0.091 Sum_probs=3.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHhHHHHHHHHHHHhcchhhhhhhhcccccccccccchhhhhhhhhhh
Q psy17390 138 LTQFSELPFGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHICKLSEATRDISI 217 (522)
Q Consensus 138 ii~~ii~llgi~gN~lVi~vi~~~r~lr~~~~~li~nLAvaDll~~l~~lp~~i~~~~~~~~~~~~~~C~~~~~l~~~~~ 217 (522)
++..+-+.+++++-++++.++...|++|+..+....||++++++..+..+... .....+.....+..|...+.+...+.
T Consensus 5 ~i~~vg~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~~~-~~~~~~~~~~~~~~C~~~a~~~hy~~ 83 (242)
T PF00002_consen 5 IISYVGCSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLIGI-SQTFSPISTTNHCLCRAIAILLHYFF 83 (242)
T ss_dssp HHHHHHHH------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHheeh-hhccccccccccccchhhhhHhHHHH
Confidence 33445555666666666666666678888778899999999999887433321 11111111112235999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccccCCchhhhhhHHHHHHHHHHHHHHHhhh
Q psy17390 218 GVSVFTLTALSAERYCAIVNPIRSHISSKPLTIVTAFAIWVLAIILALPSALFS 271 (522)
Q Consensus 218 ~~Si~~L~~ISidRy~aI~~Pl~y~~~t~r~~~~~i~~iWl~s~l~alp~~~~~ 271 (522)
.++..-+.+++++=|..++.+.. ..+++.....+..|.+++++........
T Consensus 84 la~f~Wm~~~~~~l~~~~~~~~~---~~~~~~~~~~~~gwg~P~~iv~i~~~~~ 134 (242)
T PF00002_consen 84 LASFFWMLVEAFYLYRLLVKVFN---SSRRRFWWYYLIGWGIPALIVVISVAVN 134 (242)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhheeEEEeec---ccchhhheeeeeeecCcceeeeeeeeec
Confidence 99999999999999999988733 2244556677788999988887666554
No 30
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=97.99 E-value=0.00058 Score=68.88 Aligned_cols=279 Identities=12% Similarity=0.024 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhc-cCCCCchhHHhHH----HHHHHHHHHhcchhhhhhhhcc----cccccccccc
Q psy17390 136 LTLTQFSELPFGVLGNGTLVLIFARH-KNMRSVPNTYILS----LALGDLLVIICGVPFTSTLYTL----ESWPYGPHIC 206 (522)
Q Consensus 136 ~~ii~~ii~llgi~gN~lVi~vi~~~-r~lr~~~~~li~n----LAvaDll~~l~~lp~~i~~~~~----~~~~~~~~~C 206 (522)
+....=++.++++.-|++.++.+.++ ++..+.....+.+ ..+.|+..+.+..|....-... |-...-..-.
T Consensus 6 ~~~~~h~~~~i~~Pi~~~~~y~Il~ktp~~m~~~k~~ll~~~~~~~~~d~~~~~l~~P~~~~P~~~~~~~G~l~~~gv~~ 85 (302)
T PF10318_consen 6 YSIVLHIITIISIPIYIFGFYCILFKTPKSMKSVKWYLLNHHFWNFLLDLYLSFLIIPYFFFPSPAGYPLGILSYFGVPT 85 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeEeChhhhHHHHHHHHHHHHHHHHHHHHhhhEEeeeeccchHHhhCCcchhhcccCh
Confidence 34455677888889999999887754 3333444444444 4557888888777765443322 2111112345
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhccccccccCCchhhhhhHHHHHHHHHHHHHHHhhhccccccccCCCceEE
Q psy17390 207 KLSEATRDISIGVSVFTLTALSAERYCAIVNPIRSHISSKPLTIVTAFAIWVLAIILALPSALFSHVQPATTASNDTIYF 286 (522)
Q Consensus 207 ~~~~~l~~~~~~~Si~~L~~ISidRy~aI~~Pl~y~~~t~r~~~~~i~~iWl~s~l~alp~~~~~~~~~~~~~~~~~~~~ 286 (522)
.++.++..........++..+=-.||.++...-+ +...++......++.++++.+..+|..+....++.....-.+..-
T Consensus 86 ~~q~~i~~~~~~~~~~S~~~lFe~R~~~i~~~~~-~~~~~~~r~~~~~~~y~~~~~~~~~~~~~~pdQ~~~k~~~~~~~p 164 (302)
T PF10318_consen 86 PIQFYIGVTLLAFVGVSILSLFENRYQIIIRNRS-RSLWKKIRIIFIIFNYIIAFLFFIPIYLSIPDQEEAKQEVLKKYP 164 (302)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccc-cccchhhHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHhhcc
Confidence 6667777777778888888888999999996644 223333334555566667776777766633321111000111122
Q ss_pred ecCC--Cc-c-----cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccCcchhHHHHHHHHHHHH
Q psy17390 287 CSPF--PI-E-----YGQQYKQTVVLCKFLAYYLGPLCVIACFYILMARHLELSTRNMPGELLGQSSQSRARKKVAKMVS 358 (522)
Q Consensus 287 C~~~--~~-~-----~~~~~~~~y~~~~~i~~~~iPliiii~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~k~~k~l~ 358 (522)
|.+. .. + ..+.. +......+..++....+++.-..+...++++.+ ...+++.++.++|..+.+.
T Consensus 165 c~~~~~~~~~~~fv~~~~~~---~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~-----~~~S~~T~k~Qkkfl~~l~ 236 (302)
T PF10318_consen 165 CPPPEFFDNPPVFVLSTDSW---YILIIIIIFLLIIFIQIIFFAFLIIYYLLKSQK-----KTMSKKTRKMQKKFLIALI 236 (302)
T ss_pred CCchhhcCCCCeEEEcCCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch-----hhhCHHHHHHHHHHHHHHH
Confidence 3210 01 0 01111 212222222333333344444445555555433 1123466678889999888
Q ss_pred HHHHHHHHhhhHHHHHHHHHhhcccCCcchhhHHHHHHHHHHHhhhhccCChhhhHHhHHHHhHHHHHHhhhhcC
Q psy17390 359 VLASSTLASTLSPYTSLVVCLGNISTGICSVVVHLAVNYNMMSPWCHSIVPPVEDSTLALALGFHQIQSFTKLSS 433 (522)
Q Consensus 359 iiv~~f~lc~w~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~lNPiIY~~iy~~~~~~~~~~frk~~~ 433 (522)
+-+++.++..-.|...+.+.......+ . ...++.......+..+.-+..-+.+..||... .+.+|
T Consensus 237 iQ~~ip~~~l~~P~~~~~~~~~~~~~~---q---~~~n~~~~~~~~HG~~sti~mi~~~~pYR~~~----~~~~~ 301 (302)
T PF10318_consen 237 IQVLIPFIFLFIPLIYFIISIIFGYYN---Q---ALNNISFIIISLHGIASTIVMILVHKPYRKFL----LSLFR 301 (302)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccccc---c---ccchHHHHHHHhccHHHHHHHhhccHHHHHHH----HHHhc
Confidence 888888877678988877654322111 1 12233444444455555554444444444444 55544
No 31
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=97.89 E-value=0.0075 Score=62.61 Aligned_cols=117 Identities=15% Similarity=0.065 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHhHHHHHHH---HHHHhcchhhhhhhhccc---------ccc
Q psy17390 133 LLKLTLTQFSELPFGVLGNGTLVLIFARHKNMRSVPNTYILSLALGD---LLVIICGVPFTSTLYTLE---------SWP 200 (522)
Q Consensus 133 ~~~~~ii~~ii~llgi~gN~lVi~vi~~~r~lr~~~~~li~nLAvaD---ll~~l~~lp~~i~~~~~~---------~~~ 200 (522)
...+.++-.++.+++..-....+.++.+.|..|.-.+++.+.+...- ++.-+...|........+ -|.
T Consensus 26 ~~~~~i~e~~l~~~~~~~~~~~~~i~~~~r~FH~N~~~l~~~~~~~w~e~~i~k~~i~~y~~~~~~~~~~~~~~~~~~~t 105 (365)
T PF03125_consen 26 YIILLIFELILYIICFYFTFKSCYIILKIRQFHRNLNILFIFILLQWFELIIGKILIIPYQIGIITLGDISIGTYIQWWT 105 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeeecCccchhhhhhhc
Confidence 33444555555555555555566677777777766666655544433 222233444433222111 011
Q ss_pred c------------ccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhhccccccccCCchh
Q psy17390 201 Y------------GPHICKLSEATRDISIGVSVFTLTALSAERYCAIVNPIRSHISSKPLT 249 (522)
Q Consensus 201 ~------------~~~~C~~~~~l~~~~~~~Si~~L~~ISidRy~aI~~Pl~y~~~t~r~~ 249 (522)
. +...-.+.+++..-.+...+..+.++++||.+|-..--.|.+.+++..
T Consensus 106 ~~~~~m~~v~~~~~~~~l~~~~~l~~~y~~~~~~~~~~~~iER~~AT~~i~dYEk~~R~~I 166 (365)
T PF03125_consen 106 DDPSEMIPVNSFNDSWPLFIGGFLRWHYMFSAIFCLLAIVIERCFATYFIKDYEKKSRRWI 166 (365)
T ss_pred cCcccceeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchH
Confidence 1 111223345555666667789999999999999999888886555543
No 32
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=97.25 E-value=0.1 Score=52.15 Aligned_cols=102 Identities=15% Similarity=0.042 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhHHHHHHhhhccCCC-CchhHHhHHHHHHHHHHHhc--chhhhhhhhc-------ccccccccc-cchhh
Q psy17390 141 FSELPFGVLGNGTLVLIFARHKNMR-SVPNTYILSLALGDLLVIIC--GVPFTSTLYT-------LESWPYGPH-ICKLS 209 (522)
Q Consensus 141 ~ii~llgi~gN~lVi~vi~~~r~lr-~~~~~li~nLAvaDll~~l~--~lp~~i~~~~-------~~~~~~~~~-~C~~~ 209 (522)
-+.++++.+-|-+-++.+...|+.+ ..-.++++.-|+-|++.++. ..|..+..+- .++|-.+.. .=...
T Consensus 12 k~~~~lsf~~Np~fiyli~~~~~~~~G~Yr~LL~~Fa~fn~~~S~~~~~vp~~vh~yry~F~~fi~dG~F~~~s~l~~~~ 91 (310)
T PF10319_consen 12 KIFGILSFIVNPIFIYLIFTEKKSQFGNYRYLLLFFAIFNLIYSVVDLLVPICVHGYRYAFVVFISDGPFFEKSELGQHL 91 (310)
T ss_pred HHHHHHHHHHhhhhheeEEcccccccccHHHHHHHHHHHHHHHHHHHHHhhheeeccceEEEEEEcCCcCcCcchHHHHH
Confidence 4567888999999999988777665 67789999999999999885 3454443221 123322111 11112
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHhhcccccc
Q psy17390 210 EATRDISIGVSVFTLTALSAERYCAIVNPIRSH 242 (522)
Q Consensus 210 ~~l~~~~~~~Si~~L~~ISidRy~aI~~Pl~y~ 242 (522)
...-..+..+|-..|..==+.||+++++|...+
T Consensus 92 ls~RCsfIs~sYaIL~~HFvYRYl~l~~~~~~~ 124 (310)
T PF10319_consen 92 LSIRCSFISGSYAILHIHFVYRYLVLFNSKFIN 124 (310)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhCcHHHH
Confidence 222233344455556666689999999996533
No 33
>KOG4564|consensus
Probab=96.92 E-value=0.12 Score=54.61 Aligned_cols=206 Identities=14% Similarity=0.022 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHhHHHHHHHHHHHhcchhhhhhhhcccc------------ccccccc
Q psy17390 138 LTQFSELPFGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLES------------WPYGPHI 205 (522)
Q Consensus 138 ii~~ii~llgi~gN~lVi~vi~~~r~lr~~~~~li~nLAvaDll~~l~~lp~~i~~~~~~~------------~~~~~~~ 205 (522)
+++.+=-.++++.=++.+.++..-|++|-..|++=.||.++=++-++..+.........+. -..+...
T Consensus 149 ~lytvGyslSl~sL~vAl~If~~FR~L~CtRn~IH~nLF~SfiLra~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 228 (473)
T KOG4564|consen 149 ILYTVGYSLSLVSLLVALIIFLYFRSLHCTRNYIHMNLFASFILRAASVLIKDLVLVVNGEQDASSDTSLHCLISSNPVG 228 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccchh
Confidence 3444444444444445555566678899889999999999998888865555443332211 1245678
Q ss_pred chhhhhhhhhhhHHHHHHHHHHHHHHHHHhhccccccccCCchhhhhhHHHHHHHHHHHHHHHhhhccccccccCCCceE
Q psy17390 206 CKLSEATRDISIGVSVFTLTALSAERYCAIVNPIRSHISSKPLTIVTAFAIWVLAIILALPSALFSHVQPATTASNDTIY 285 (522)
Q Consensus 206 C~~~~~l~~~~~~~Si~~L~~ISidRy~aI~~Pl~y~~~t~r~~~~~i~~iWl~s~l~alp~~~~~~~~~~~~~~~~~~~ 285 (522)
|+...++...+..+..+=+.+=.+.=|-.|+--.. ..+++-..-+++.|.+.+++..+..+.....+. .
T Consensus 229 Ck~~~~~~~Yf~~aNf~WmlvEGlYLhtLlv~~~~---ser~~~~~y~~iGWG~P~v~v~~Wai~r~~~~d--------~ 297 (473)
T KOG4564|consen 229 CKLLFVFFQYFVLANFFWMLVEGLYLHTLLVVAFF---SERRYFWLYLLIGWGVPAVFVVVWAIVRLYLED--------T 297 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeec---cCccHHHHHHHHhhCCcHHHhhhHHhHheeecc--------c
Confidence 99988888888888877777666665655554322 124556677889999999999988887744331 2
Q ss_pred EecCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccCcchhHHHHHHHHHHHHHHHHHHH
Q psy17390 286 FCSPFPIEYGQQYKQTVVLCKFLAYYLGPLCVIACFYILMARHLELSTRNMPGELLGQSSQSRARKKVAKMVSVLASSTL 365 (522)
Q Consensus 286 ~C~~~~~~~~~~~~~~y~~~~~i~~~~iPliiii~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~k~~k~l~iiv~~f~ 365 (522)
.|..........+.. -.-.++++++-.++.+.|++.+-++-|..+ .......+|++|-.++++=.|-
T Consensus 298 ~CW~~~~~~~~~WIi-------~gPi~~ai~vNf~flinIvrILv~KLr~~~------~~~~~~y~K~vKaTLvLIPLfG 364 (473)
T KOG4564|consen 298 GCWDSNDTGHIWWII-------RGPILLAILVNFIFLINIVRILVTKLRASN------ASETDQYRKLVKATLVLIPLFG 364 (473)
T ss_pred cccccCCCcceEEEE-------eccHHHHHHHHHHHHHHHHHHHHHHhcCcc------ccchHHHHHHHHHHHHHHHHcC
Confidence 576433221111100 111223334444455566666655443221 1222336778887776666555
Q ss_pred Hh
Q psy17390 366 AS 367 (522)
Q Consensus 366 lc 367 (522)
+-
T Consensus 365 I~ 366 (473)
T KOG4564|consen 365 IH 366 (473)
T ss_pred Ce
Confidence 43
No 34
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=96.55 E-value=0.12 Score=51.39 Aligned_cols=120 Identities=14% Similarity=0.141 Sum_probs=73.6
Q ss_pred HHHHHhHHHHHHhhhccCC-CCchhHHhHHHHHHHHHHHhcchhhhhhhhcccccccccccchhhhhhhhhhhHHHHHHH
Q psy17390 146 FGVLGNGTLVLIFARHKNM-RSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHICKLSEATRDISIGVSVFTL 224 (522)
Q Consensus 146 lgi~gN~lVi~vi~~~r~l-r~~~~~li~nLAvaDll~~l~~lp~~i~~~~~~~~~~~~~~C~~~~~l~~~~~~~Si~~L 224 (522)
++++|.++.+.-+.-+-+- ..++-.++..+.++++...+=.+... -+. ...|+ .+|.+...+.......-....
T Consensus 3 ~s~i~~~l~i~Pl~wH~ra~N~~~~~li~Wl~l~nl~~~INaiIW~-~n~-~~~~~---~wCDI~~kl~~~~~~g~~~a~ 77 (283)
T PF02076_consen 3 FSFIAFVLLIVPLPWHWRARNIGTCSLIFWLFLSNLIYFINAIIWR-DND-INWWP---VWCDISTKLIIGSSVGIPAAS 77 (283)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHhhhhcC-CCC-CccCc---eeeeehHHHHHHHHHHHHHHH
Confidence 3445555555544433333 35778899999999998887322221 112 23344 799999988888877766666
Q ss_pred HHHHHHHHHHhhcccccc---ccCCchhhhhhHHHHHHHHHHHHHHHhhh
Q psy17390 225 TALSAERYCAIVNPIRSH---ISSKPLTIVTAFAIWVLAIILALPSALFS 271 (522)
Q Consensus 225 ~~ISidRy~aI~~Pl~y~---~~t~r~~~~~i~~iWl~s~l~alp~~~~~ 271 (522)
.+|+..=| .|..+-+.. .-.+|+...=+.+++.+.++.....++..
T Consensus 78 lcI~r~L~-~I~s~r~~~~~~~~~rr~~~~d~~i~~g~Pil~m~l~yivQ 126 (283)
T PF02076_consen 78 LCIMRRLY-RIASARAVSLSRSEKRRRIIIDLLICFGIPILQMALHYIVQ 126 (283)
T ss_pred HHHHHHHH-HHhccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66665444 355443322 12355666667788888887776665543
No 35
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].
Probab=96.49 E-value=0.19 Score=50.59 Aligned_cols=148 Identities=11% Similarity=0.068 Sum_probs=92.4
Q ss_pred cccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhhccccccccCCchhhhhhHHHHHHHHHHHHHHHhhhccccccccCCC
Q psy17390 203 PHICKLSEATRDISIGVSVFTLTALSAERYCAIVNPIRSHISSKPLTIVTAFAIWVLAIILALPSALFSHVQPATTASND 282 (522)
Q Consensus 203 ~~~C~~~~~l~~~~~~~Si~~L~~ISidRy~aI~~Pl~y~~~t~r~~~~~i~~iWl~s~l~alp~~~~~~~~~~~~~~~~ 282 (522)
+..=++..++.+.+.+.+.+.-++.++=|.+-+..|.++++..++-....+-++.+++++.++|.+...
T Consensus 100 n~~Lk~l~~~~~~~~Y~s~lf~~Lfc~~Rl~il~~p~~~~~i~~~i~~~~~P~i~i~p~~~~f~~~pa~----------- 168 (307)
T PF10322_consen 100 NHFLKILVFFYYYFNYSSMLFPVLFCLLRLIILYSPRNHKKICRKIFRIWIPFIFIYPFCFTFPMFPAL----------- 168 (307)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeCccchhHHHHhHHHHHHHHHHHHHHHHHHHccCCc-----------
Confidence 334566777888889999999999999999999999877666666666777778888888887766533
Q ss_pred ceEEecCCCcc----------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccCcchhHHHHHH
Q psy17390 283 TIYFCSPFPIE----------YGQQYKQTVVLCKFLAYYLGPLCVIACFYILMARHLELSTRNMPGELLGQSSQSRARKK 352 (522)
Q Consensus 283 ~~~~C~~~~~~----------~~~~~~~~y~~~~~i~~~~iPliiii~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~k 352 (522)
+.|...... .....+...... .......-++.+++.++.+++++|+.+.+. ...++++..+|+|+-
T Consensus 169 --G~C~Ql~~Pf~fGAI~I~~~~~~~~~~~~~~-~l~~s~~~~~~iii~N~lm~~Klr~~k~~l-~~~~~s~~~~KAE~S 244 (307)
T PF10322_consen 169 --GYCRQLDPPFPFGAIIITSTGSWFNIRNSIF-HLFFSIFWMISIIILNILMFFKLRKLKSSL-SSQRRSKQSRKAERS 244 (307)
T ss_pred --EEEEeCCCCCCCCEEEEEEEcccccchhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchhhcccchhhhee
Confidence 234321110 011111111222 233344556678889999999999876211 112233445566666
Q ss_pred HHHHHHHHHHHHH
Q psy17390 353 VAKMVSVLASSTL 365 (522)
Q Consensus 353 ~~k~l~iiv~~f~ 365 (522)
.+.+++++++-++
T Consensus 245 LT~Tmi~mliP~i 257 (307)
T PF10322_consen 245 LTLTMISMLIPYI 257 (307)
T ss_pred HHHHHHHHHHHHH
Confidence 6666665555444
No 36
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=96.28 E-value=1.4 Score=44.92 Aligned_cols=146 Identities=10% Similarity=-0.043 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhccCCCCchhHHhHHHHHHHHHHHhcchhhhhh--hhcc--c---------cccccccc
Q psy17390 139 TQFSELPFGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTST--LYTL--E---------SWPYGPHI 205 (522)
Q Consensus 139 i~~ii~llgi~gN~lVi~vi~~~r~lr~~~~~li~nLAvaDll~~l~~lp~~i~--~~~~--~---------~~~~~~~~ 205 (522)
...+...+..+.+++.++++..+++..+-+..-+.-|+++=++.++..+.-.+. .... + ....+...
T Consensus 14 wi~~~s~ic~~~t~ftv~Tf~id~~rf~yPerpi~fl~~Cy~~~s~~~l~~~~~g~~~i~C~~~~~~~~~~~~~~~~~~~ 93 (328)
T PF01534_consen 14 WIGVWSVICFISTLFTVLTFLIDRSRFRYPERPIIFLSFCYFIVSLGYLIRFILGRESIACRSQDGTERILVQDGLENSS 93 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCCccchhhHHHHHHHHHHHHHHHHHhccCCCcCCCcCCCCceeEeecCCCCCc
Confidence 335555566667777777766555533333444555666666655532221111 0000 0 12235678
Q ss_pred chhhhhhhhhhhHHHHHHHHHHHHHHHHHhhccccccccCCchhhhhhHHHHHHHHHHHHHHHhhhccccccccCCCceE
Q psy17390 206 CKLSEATRDISIGVSVFTLTALSAERYCAIVNPIRSHISSKPLTIVTAFAIWVLAIILALPSALFSHVQPATTASNDTIY 285 (522)
Q Consensus 206 C~~~~~l~~~~~~~Si~~L~~ISidRy~aI~~Pl~y~~~t~r~~~~~i~~iWl~s~l~alp~~~~~~~~~~~~~~~~~~~ 285 (522)
|.+...+.+.+..++..=-+.+++.=|++....-... .-.++....=+++|.++++..+..+....... ++-..
T Consensus 94 C~~~F~l~Yyf~mAa~~WWviLt~~W~lsa~~kw~~e-~i~~~s~yfH~~aW~iP~~~ti~vL~~~~Vdg-----D~ltG 167 (328)
T PF01534_consen 94 CTVVFLLLYYFGMAASLWWVILTLTWFLSAGLKWGSE-AIEKKSSYFHLVAWGIPAVLTIAVLALRKVDG-----DELTG 167 (328)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccCcc-hhhhhcchhhhHHhhhhHHHHHHHHHhccccc-----ccccc
Confidence 9999999999988888888888999999887543322 33456677788999999999888776655443 22346
Q ss_pred EecCC
Q psy17390 286 FCSPF 290 (522)
Q Consensus 286 ~C~~~ 290 (522)
.|..-
T Consensus 168 iC~Vg 172 (328)
T PF01534_consen 168 ICFVG 172 (328)
T ss_pred eeEEe
Confidence 78753
No 37
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans. The function of this family is unknown.
Probab=94.17 E-value=0.55 Score=43.75 Aligned_cols=94 Identities=16% Similarity=0.127 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhHHHHHHhhhccCCC---CchhHHhHHHHHHHHHHHhcchhhhhhhhcc-------cccccccccchhhh
Q psy17390 141 FSELPFGVLGNGTLVLIFARHKNMR---SVPNTYILSLALGDLLVIICGVPFTSTLYTL-------ESWPYGPHICKLSE 210 (522)
Q Consensus 141 ~ii~llgi~gN~lVi~vi~~~r~lr---~~~~~li~nLAvaDll~~l~~lp~~i~~~~~-------~~~~~~~~~C~~~~ 210 (522)
+++-..+.+.+.+.+..+.++|++. +++=+ .+-+..-++.+|..+..... .+-...-..|.+..
T Consensus 48 ~~v~~~s~~~s~~L~ifi~~rk~l~~~~ksTIv------FaT~g~fvLtlP~~lf~~wl~~~l~~~~ep~ytI~vCSflk 121 (226)
T PF06681_consen 48 FIVNTVSWLFSYFLCIFIWRRKNLIRSYKSTIV------FATFGQFVLTLPLYLFQTWLVFFLWFGHEPQYTIFVCSFLK 121 (226)
T ss_pred HHHHhHHHHHHHHHHHHHhhhHHHHHhhcCeEE------EeeHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEeehHHH
Confidence 4555666667766666666665531 22211 12223333355654432221 12233556798877
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhcccc
Q psy17390 211 ATRDISIGVSVFTLTALSAERYCAIVNPIR 240 (522)
Q Consensus 211 ~l~~~~~~~Si~~L~~ISidRy~aI~~Pl~ 240 (522)
-+......+.-...+++|++||.-|+.-.|
T Consensus 122 ~f~S~t~s~~~vip~aVAIyRy~~VV~k~r 151 (226)
T PF06681_consen 122 NFTSSTTSCAQVIPVAVAIYRYLIVVLKKR 151 (226)
T ss_pred hHHHHHhhhhccchhhhhhhhhheeeeccc
Confidence 666666666667777899999999987544
No 38
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].
Probab=92.04 E-value=0.14 Score=45.81 Aligned_cols=80 Identities=16% Similarity=0.120 Sum_probs=59.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHhhccccccc-cCCchhhhhhHHHHHHHHHHHHHHHhhhccccccccCCCceEEec
Q psy17390 210 EATRDISIGVSVFTLTALSAERYCAIVNPIRSHI-SSKPLTIVTAFAIWVLAIILALPSALFSHVQPATTASNDTIYFCS 288 (522)
Q Consensus 210 ~~l~~~~~~~Si~~L~~ISidRy~aI~~Pl~y~~-~t~r~~~~~i~~iWl~s~l~alp~~~~~~~~~~~~~~~~~~~~C~ 288 (522)
..+..++....++.-.+|+++|-..|.+|++... .|.+|..+-+.++.++.+..-+.|++..-..........-...|.
T Consensus 48 TL~~tf~Yl~plfltvLMti~Ri~iV~~P~~~~~~Fs~~kl~~YC~~i~i~~~i~LlIPy~S~C~vnf~~~~~~f~s~Ca 127 (153)
T PF03383_consen 48 TLFGTFSYLHPLFLTVLMTINRIYIVLFPFGSEIWFSDKKLWIYCGIIAILSFISLLIPYFSDCYVNFDARTFSFVSACA 127 (153)
T ss_pred eeeehHHHHHHHHHHHHHHHhheEEEEecCCCccccccchhHHHHHHHHHHHHHHHHhhcCCCCcEEEEeeeeEEEEccC
Confidence 4456677778889999999999999999999865 999999999988888888877777765444433322333345676
Q ss_pred C
Q psy17390 289 P 289 (522)
Q Consensus 289 ~ 289 (522)
+
T Consensus 128 p 128 (153)
T PF03383_consen 128 P 128 (153)
T ss_pred C
Confidence 5
No 39
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=89.12 E-value=1.3 Score=34.87 Aligned_cols=64 Identities=5% Similarity=-0.078 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHhhcccCCcchhhHHHHHHHHHHHhhhhccCChhhh
Q psy17390 346 QSRARKKVAKMVSVLASSTLASTLS-PYTSLVVCLGNISTGICSVVVHLAVNYNMMSPWCHSIVPPVED 413 (522)
Q Consensus 346 ~~~~~~k~~k~l~iiv~~f~lc~w~-P~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~lNPiIY 413 (522)
++++-+|.++.+++=-++|+++ |+ |+..-...... +....+..+...+...+..+|..+|-++|
T Consensus 3 ~r~~i~r~lr~mfiYP~~Yi~l-wlfP~~~~~~~~~~---~~~~~p~~~l~~i~~~~~~~~G~VD~lvf 67 (76)
T PF11970_consen 3 RRKRIRRQLRSMFIYPLVYIVL-WLFPFAAHRMQYMY---EIGHGPSFWLFCIAGFMQPSQGFVDCLVF 67 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh---ccCCCCchHHHHHHHHHHHccCHHHhhhe
Confidence 4566678899999999999999 77 98776554421 11222333445566677777888887765
No 40
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=89.07 E-value=22 Score=34.17 Aligned_cols=43 Identities=14% Similarity=0.189 Sum_probs=36.8
Q ss_pred cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhhccccccc
Q psy17390 201 YGPHICKLSEATRDISIGVSVFTLTALSAERYCAIVNPIRSHI 243 (522)
Q Consensus 201 ~~~~~C~~~~~l~~~~~~~Si~~L~~ISidRy~aI~~Pl~y~~ 243 (522)
.+...++.......+.+..+++.-..+++||++|....-+|.+
T Consensus 80 I~~~~~K~~h~~~~flmT~~ml~PigftIERfiAl~~A~~YE~ 122 (236)
T PF02175_consen 80 IDPTLFKYGHLTGLFLMTIPMLFPIGFTIERFIALKMAEKYEN 122 (236)
T ss_pred EchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence 3455677778888899999999999999999999999877764
No 41
>PF06454 DUF1084: Protein of unknown function (DUF1084); InterPro: IPR009457 This entry consists of several hypothetical plant specific proteins of unknown function.
Probab=85.89 E-value=40 Score=33.63 Aligned_cols=53 Identities=15% Similarity=0.141 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccCC-CCchhHHhHHHHHHHHHHHh
Q psy17390 129 KLRKLLKLTLTQFSELPFGVLGNGTLVLIFARHKNM-RSVPNTYILSLALGDLLVII 184 (522)
Q Consensus 129 ~~~~~~~~~ii~~ii~llgi~gN~lVi~vi~~~r~l-r~~~~~li~nLAvaDll~~l 184 (522)
.......+++++.+++++|++= .+-...|.++. .++...|..-+.++.+.-++
T Consensus 24 ~~~~~~~La~iy~~v~~~aliQ---l~ri~~r~~~~~~t~qkvf~ll~~l~~~~R~i 77 (281)
T PF06454_consen 24 QDGLFYALAAIYLLVALVALIQ---LIRIQYRVPKYGWTTQKVFHLLIFLANLVRAI 77 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HhheeEeccccCccHHHHHHHHHHHHHHHHeE
Confidence 4455667777777777777643 11111122222 24545555555555555554
No 42
>PF13853 7tm_4: Olfactory receptor
Probab=72.33 E-value=0.55 Score=41.82 Aligned_cols=82 Identities=20% Similarity=0.320 Sum_probs=52.9
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhccccccccCCCceEEecC--CCcc-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17390 250 IVTAFAIWVLAIILALPSALFSHVQPATTASNDTIYFCSP--FPIE-YGQQYKQTVVLCKFLAYYLGPLCVIACFYILMA 326 (522)
Q Consensus 250 ~~~i~~iWl~s~l~alp~~~~~~~~~~~~~~~~~~~~C~~--~~~~-~~~~~~~~y~~~~~i~~~~iPliiii~~Y~~I~ 326 (522)
..+++..|+.+++.+++..........+ +-.+...|.. .... .+...+..+......+..+.|+.+++++|++|+
T Consensus 4 ~~l~~~~~~~~~~~~l~~~~~~~~l~~~--nii~~f~c~~~ll~LaC~dt~~~~~~~~~~~~~~~~~~~~~Il~SY~~Il 81 (144)
T PF13853_consen 4 LLLAAGSWLSGLLNSLPHTLLTLSLCFC--NIIHHFCCDPPLLKLACSDTSINEIVGFVVAIFILLGPLLLILFSYIRIL 81 (144)
T ss_pred ehhhHHHHHHHHHHHHHHHHHHeeCCCC--CCCcceeeCHHHhcccCCchhhhheeeecccceeEEEEeeccccceeEEE
Confidence 4567788999988888877665444333 3334445552 1111 233444555555556667899999999999999
Q ss_pred HHHHhhc
Q psy17390 327 RHLELST 333 (522)
Q Consensus 327 ~~lr~~~ 333 (522)
+.+.|..
T Consensus 82 ~avlki~ 88 (144)
T PF13853_consen 82 RAVLKIP 88 (144)
T ss_pred ehhhccc
Confidence 9887753
No 43
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=71.89 E-value=64 Score=32.45 Aligned_cols=63 Identities=14% Similarity=-0.010 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccCcchhHHHHHHHHHHHHHHHHHHHHh
Q psy17390 305 CKFLAYYLGPLCVIACFYILMARHLELSTRNMPGELLGQSSQSRARKKVAKMVSVLASSTLAS 367 (522)
Q Consensus 305 ~~~i~~~~iPliiii~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~~~k~~k~l~iiv~~f~lc 367 (522)
....+-+.+-++..+..-....|..||-+++..+.+..+.+...+-.|.....+++-+.|++.
T Consensus 187 ~~~~lPf~i~l~s~~lli~SL~rH~r~M~~n~~g~~~ps~~aH~~a~k~~~sfl~ly~~~~~~ 249 (303)
T PF05296_consen 187 LGSFLPFLIFLVSSILLIFSLWRHMRRMQKNATGFRDPSTEAHIRAIKTMISFLILYIIYFLS 249 (303)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555666667788888777777776667777766777777766666666554
No 44
>PF10325 7TM_GPCR_Srz: Serpentine type 7TM GPCR chemoreceptor Srz; InterPro: IPR018817 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class z (Srz), a solo family amongst the superfamilies of chemoreceptors [, ]. The genes encoding Srz appear to be under strong adaptive evolutionary pressure [].
Probab=50.39 E-value=2.4e+02 Score=27.36 Aligned_cols=111 Identities=12% Similarity=0.056 Sum_probs=59.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHhhcccc--ccccCCchhhhhhHHHHHHHHHHHHHHHhhhccccccccCCCceEEe
Q psy17390 210 EATRDISIGVSVFTLTALSAERYCAIVNPIR--SHISSKPLTIVTAFAIWVLAIILALPSALFSHVQPATTASNDTIYFC 287 (522)
Q Consensus 210 ~~l~~~~~~~Si~~L~~ISidRy~aI~~Pl~--y~~~t~r~~~~~i~~iWl~s~l~alp~~~~~~~~~~~~~~~~~~~~C 287 (522)
.+.......+--+.+..+|++|++---.|-. +-..+.+.....+....++.++-.+............ ..+
T Consensus 86 ~~~l~i~~~v~~lllsLLAIqRFllyFfP~~Ek~v~~~~k~~~~~I~~lY~~~~~k~i~~~~~~~~~~~~-------~~~ 158 (267)
T PF10325_consen 86 IFILYIITQVFHLLLSLLAIQRFLLYFFPSSEKYVNFSQKNIKKIIWFLYIFFILKDIVFFIWYFISFNN-------EST 158 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------ccc
Confidence 3444455566667899999999999999974 3336666665555555555554433333322111100 000
Q ss_pred cCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy17390 288 SPFPIEYGQQYKQTVVLCKFLAYYLGPLCVIACFYILMARHLELSTR 334 (522)
Q Consensus 288 ~~~~~~~~~~~~~~y~~~~~i~~~~iPliiii~~Y~~I~~~lr~~~~ 334 (522)
. . .......+... .+... +-+.+....|+-|+..+||.++
T Consensus 159 ~---~--~~~~~~~~~~~-~~~~~-~ll~~S~lLYIPI~isirK~~~ 198 (267)
T PF10325_consen 159 E---E--IETFSYIYVIF-YIILN-ILLFLSALLYIPIFISIRKLSH 198 (267)
T ss_pred h---h--hhHHHHHHHHH-HHHhh-HHHHHHHHHHHHHHHHHHHhhc
Confidence 0 0 01112222211 12222 3355667899999999998764
No 45
>PF00003 7tm_3: 7 transmembrane sweet-taste receptor of 3 GCPR; InterPro: IPR017978 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). GPCR family 3 receptors (also known as family C) are structurally similar to other GPCRs, but do not show any significant sequence similarity and thus represent a distinct group. Structurally they are composed of four elements; an N-terminal signal sequence; a large hydrophilic extracellular agonist-binding region containing several conserved cysteine residues which could be involved in disulphide bonds; a shorter region containing seven transmembrane domains; and a C-terminal cytoplasmic domain of variable length []. Family 3 members include the metabotropic glutamate receptors, the extracellular calcium-sensing receptors, the gamma-amino-butyric acid (GABA) type B receptors, and the vomeronasal type-2 receptors [, , , ]. As these receptors regulate many important physiological processes they are potentially promising targets for drug development. This entry represents the C-terminal region of family 3 GPCR receptor proteins, which contains the seven transmembrane region. The seven TM regions assemble in such a way as to produce a docking pocket into which such molecules as cyclamate and lactisole have been found to bind and consequently confer the taste of sweetness []. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=49.63 E-value=1e+02 Score=29.38 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=15.4
Q ss_pred ccccchhhhhhhhhhhHHHHHHHHH
Q psy17390 202 GPHICKLSEATRDISIGVSVFTLTA 226 (522)
Q Consensus 202 ~~~~C~~~~~l~~~~~~~Si~~L~~ 226 (522)
++..|.+..++...+.....-.+.+
T Consensus 52 s~~~C~~r~~~~~l~f~l~~~~ll~ 76 (238)
T PF00003_consen 52 SDILCTLRRWLFSLGFTLIFSALLA 76 (238)
T ss_pred CCcEEEEeeeeeeeehHhhhhHHHH
Confidence 4567998877766555554444443
No 46
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=43.09 E-value=1.7e+02 Score=29.39 Aligned_cols=38 Identities=5% Similarity=-0.203 Sum_probs=30.3
Q ss_pred hhhhccCChhhhHHhHHHHhHHHHHHhhhhcCcccccc
Q psy17390 402 PWCHSIVPPVEDSTLALALGFHQIQSFTKLSSVYTDVC 439 (522)
Q Consensus 402 ~~~ns~lNPiIY~~iy~~~~~~~~~~frk~~~~~~~~c 439 (522)
...=..+|+.+.+++|..+...+|+++|+.+|..+..+
T Consensus 291 ~~~l~~~ns~~NPiIY~~~~~~fr~~~~~~~~~~~~~~ 328 (335)
T PHA03087 291 TEIISLSHCCINPLIYAFVSEFFNKHKKKSLKLMFTSS 328 (335)
T ss_pred HHHHHHHHHhhhhhHHHHcCHHHHHHHHHHHHHHhhcC
Confidence 33445579999999999999999999999887655333
No 47
>PF11683 DUF3278: Protein of unknown function (DUF3278); InterPro: IPR021697 This bacterial family of proteins has no known function.
Probab=37.33 E-value=2.7e+02 Score=24.03 Aligned_cols=42 Identities=17% Similarity=0.296 Sum_probs=24.1
Q ss_pred HHHHHHhhcccc-ccc-cCCchhhhhhHHHHHHHHHHHHHHHhh
Q psy17390 229 AERYCAIVNPIR-SHI-SSKPLTIVTAFAIWVLAIILALPSALF 270 (522)
Q Consensus 229 idRy~aI~~Pl~-y~~-~t~r~~~~~i~~iWl~s~l~alp~~~~ 270 (522)
+-|++-|.-|+- |++ --.|-...+.+..|.+.++..+..++.
T Consensus 11 iK~fygI~GplDE~r~~ei~rign~a~i~l~~~~l~~~li~l~l 54 (129)
T PF11683_consen 11 IKRFYGIQGPLDEYRRQEINRIGNNAFIILFYYSLLLNLISLLL 54 (129)
T ss_pred HHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888987 554 222333344555666666665555543
No 48
>KOG4289|consensus
Probab=30.53 E-value=3.9e+02 Score=32.90 Aligned_cols=76 Identities=12% Similarity=0.078 Sum_probs=42.7
Q ss_pred HHHHHhhhccCCCCchhHHhHHHHHHHHHHHhcchhhhhhhhcccccccccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Q psy17390 153 TLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHICKLSEATRDISIGVSVFTLTALSAERY 232 (522)
Q Consensus 153 lVi~vi~~~r~lr~~~~~li~nLAvaDll~~l~~lp~~i~~~~~~~~~~~~~~C~~~~~l~~~~~~~Si~~L~~ISidRy 232 (522)
+.++.+...|.+|+...-.=.||++|=.+.-++ +.+ +-.. ....|.+...+..+...+...-+.+-++.=|
T Consensus 2182 lt~~llls~RsLksn~~~I~~~l~~Al~l~~L~---Fv~-----gi~~-nq~~CtvvailLhf~~~stFaWlfl~gLhlY 2252 (2531)
T KOG4289|consen 2182 LTFLLLLSLRSLKSNSHGIHFNLAAALGLAQLV---FVL-----GINQ-NQFYCTVVAILLHFTYLSTFAWLFLEGLHLY 2252 (2531)
T ss_pred HHHHHHHHHHHHhhcchhhhhHHHHHHhHHHHH---hhh-----hccc-CchhhHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333444445566655555555555543333221 100 1111 4568999888888777777666666777767
Q ss_pred HHhhc
Q psy17390 233 CAIVN 237 (522)
Q Consensus 233 ~aI~~ 237 (522)
.+.+-
T Consensus 2253 Rml~e 2257 (2531)
T KOG4289|consen 2253 RMLTE 2257 (2531)
T ss_pred HHHhc
Confidence 66664
No 49
>PHA03235 DNA packaging protein UL33; Provisional
Probab=29.64 E-value=4e+02 Score=28.05 Aligned_cols=35 Identities=11% Similarity=-0.046 Sum_probs=29.0
Q ss_pred HhhhhccCChhhhHHhHHHHhHHHHHHhhhhcCcc
Q psy17390 401 SPWCHSIVPPVEDSTLALALGFHQIQSFTKLSSVY 435 (522)
Q Consensus 401 l~~~ns~lNPiIY~~iy~~~~~~~~~~frk~~~~~ 435 (522)
+...=..+|..+.+++|..++..+|+.|++.++..
T Consensus 290 i~~~La~~ns~lNPiIY~~~~~~FRk~~~~~l~~~ 324 (409)
T PHA03235 290 LSRLVPNLHCLLNPILYAFLGNDFLKRFRQCFRGE 324 (409)
T ss_pred HHHHHHHHHHhHhHHHHHHhhHHHHHHHHHHHhhh
Confidence 33344668999999999999999999999988753
No 50
>KOG1056|consensus
Probab=28.87 E-value=6.4e+02 Score=29.43 Aligned_cols=42 Identities=14% Similarity=0.344 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhccCC-------CCchhHHhHHHHH
Q psy17390 136 LTLTQFSELPFGVLGNGTLVLIFARHKNM-------RSVPNTYILSLAL 177 (522)
Q Consensus 136 ~~ii~~ii~llgi~gN~lVi~vi~~~r~l-------r~~~~~li~nLAv 177 (522)
..++..++.++|++.=+.|+.++.+.... |...++++.++.+
T Consensus 561 ~~i~~l~lA~LGii~tl~vlv~fvr~~~TpvVkasgreLsyiLL~gi~l 609 (878)
T KOG1056|consen 561 WSIAPLLLAILGIIATLFVLVLFVRYNDTPVVKASGRELSYILLLGIFL 609 (878)
T ss_pred ccHHHHHHHHHHHHHHHHhheeEEEecCCceEEecCcEehHHHHHHHHH
Confidence 44666778888888888888888776543 2344566665543
No 51
>PF09882 DUF2109: Predicted membrane protein (DUF2109); InterPro: IPR019214 This entry is found in various hypothetical archaeal proteins and has no known function.
Probab=23.29 E-value=1.5e+02 Score=23.16 Aligned_cols=49 Identities=14% Similarity=0.306 Sum_probs=37.1
Q ss_pred HHHHHHHhHHHHHHhhhccCCCCchhHHhHHHHHHHHHHHhcchhhhhh
Q psy17390 144 LPFGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTST 192 (522)
Q Consensus 144 ~llgi~gN~lVi~vi~~~r~lr~~~~~li~nLAvaDll~~l~~lp~~i~ 192 (522)
.++|+++=.+++-++..+.+.++-.+.-.+|-|++-++....--|+...
T Consensus 4 ~i~g~Iai~~~iR~~~~~~r~~KL~yLnv~~F~iaalIaL~i~~P~g~i 52 (78)
T PF09882_consen 4 IIIGIIAILMAIRIFLTKSRARKLLYLNVINFAIAALIALYIKSPMGAI 52 (78)
T ss_pred HHHHHHHHHHHHHHHHhHhHHHhhhHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 4456666667777777777888888999999999999888766666543
No 52
>KOG4220|consensus
Probab=22.15 E-value=2.1e+02 Score=30.13 Aligned_cols=27 Identities=15% Similarity=0.201 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy17390 348 RARKKVAKMVSVLASSTLASTLSPYTSL 375 (522)
Q Consensus 348 ~~~~k~~k~l~iiv~~f~lc~w~P~~i~ 375 (522)
|..+|+..|++.-=++-|+. |.|...+
T Consensus 142 RTtkrA~~MI~~AW~iSfiL-WaPaIl~ 168 (503)
T KOG4220|consen 142 RTTKRAGLMIGAAWVLSFVL-WAPAILF 168 (503)
T ss_pred ccchHHHHHHHHHHHHHHHH-HHHHHHh
Confidence 34456666666655556666 9997665
No 53
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=21.81 E-value=1.1e+02 Score=26.46 Aligned_cols=21 Identities=29% Similarity=0.290 Sum_probs=8.4
Q ss_pred HHHHHhHHHHHHhhhccCCCC
Q psy17390 146 FGVLGNGTLVLIFARHKNMRS 166 (522)
Q Consensus 146 lgi~gN~lVi~vi~~~r~lr~ 166 (522)
.|++|=++.|+.+++|++++.
T Consensus 75 aGvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 75 AGVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHHHHHHHhccC
Confidence 344444444444445444444
No 54
>PHA02834 chemokine receptor-like protein; Provisional
Probab=20.74 E-value=52 Score=33.26 Aligned_cols=20 Identities=10% Similarity=-0.094 Sum_probs=11.9
Q ss_pred HHHHhHHHHHHhhhhcCccc
Q psy17390 417 ALALGFHQIQSFTKLSSVYT 436 (522)
Q Consensus 417 y~~~~~~~~~~frk~~~~~~ 436 (522)
+.+.+....++||+.++...
T Consensus 288 NPiIY~~~~~~fR~~~~~~~ 307 (323)
T PHA02834 288 NPIIYAFVGKNFKKVFKNMF 307 (323)
T ss_pred cHHHHHHhcHHHHHHHHHHH
Confidence 33334455578888776544
No 55
>PF10192 GpcrRhopsn4: Rhodopsin-like GPCR transmembrane domain; InterPro: IPR019336 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). This region of 270 amino acids is the seven transmembrane alpha-helical domains included within five GPCRRHODOPSN4 motifs of a G-protein-coupled-receptor (GPCR) protein, conserved from nematodes to humans [].
Probab=20.32 E-value=8e+02 Score=23.80 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy17390 349 ARKKVAKMVSVLASSTLASTLSPYTSL 375 (522)
Q Consensus 349 ~~~k~~k~l~iiv~~f~lc~w~P~~i~ 375 (522)
.+++......++-.+.+++ .|..++
T Consensus 204 ~k~~Fy~~f~~~~~lWFl~--~Pv~~~ 228 (257)
T PF10192_consen 204 EKRKFYLPFGIIFSLWFLS--LPVIVI 228 (257)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 4556666666777777766 676443
Done!