RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17390
(522 letters)
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 132 bits (335), Expect = 1e-35
Identities = 70/257 (27%), Positives = 119/257 (46%), Gaps = 9/257 (3%)
Query: 156 LIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHICKLSEATRDI 215
L+ R K +R+ N ++L+LA+ DLL ++ P+ WP+G +CKL +
Sbjct: 1 LVILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWALYYLVGGDWPFGDALCKLVGFLFVV 60
Query: 216 SIGVSVFTLTALSAERYCAIVNPIRSH-ISSKPLTIVTAFAIWVLAIILALPSALFSHVQ 274
+ S+ LTA+S +RY AIV+P+R I + V +WVLA++L+LP LFS +
Sbjct: 61 NGYASILLLTAISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLPPLLFSWL- 119
Query: 275 PATTASNDTIYFCSPFPIEYGQQYKQTVVLCKFLAYYLGPLCVIACFYILMARHLELSTR 334
T + C E + + L L ++ PL VI Y L+ R L R
Sbjct: 120 --RTVEEGNVTTCLIDFPEESTKR--SYTLLSTLLGFVLPLLVILVCYTLILRTLRKRAR 175
Query: 335 NMPGELLGQSSQSRARKKVAKMVSVLASSTLASTLSPYTSLVVCLGNISTGICSVVVHLA 394
+ + + S S +K AKM+ V+ PY +V+ L ++ ++ A
Sbjct: 176 SGASQARAKRS-SSKERKAAKMLLVV-VVVFVLCWLPYH-IVLLLDSLCPLSIWRLLPTA 232
Query: 395 VNYNMMSPWCHSIVPPV 411
+ + + +S + P+
Sbjct: 233 LLITLWLAYVNSCLNPI 249
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 66.0 bits (161), Expect = 1e-11
Identities = 44/159 (27%), Positives = 77/159 (48%), Gaps = 11/159 (6%)
Query: 133 LLKLTLTQFSELPFGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTST 192
L+ + T F FG++GN +V+ +++ + Y+L+LA+ DLL ++ +PF
Sbjct: 43 LIVVYSTIFF---FGLVGN-IIVIYVLTKTKIKTPMDIYLLNLAVSDLLFVMT-LPFQIY 97
Query: 193 LYTLESWPYGPHICKLSEATRDISIGVSVFTLTALSAERYCAIVNPIRS-HISSKPLTIV 251
Y L W +G CK+ I S+ +T +S +RY AIV+P++S I++ +
Sbjct: 98 YYILFQWSFGEFACKIVSGLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYI 157
Query: 252 TAFAIWVLAIILALPSALFSHVQPATTASNDTIYFCSPF 290
+ IW+++II P TT + C F
Sbjct: 158 VSLVIWIISIIETTPILFVY-----TTKKDHETLICCMF 191
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional.
Length = 323
Score = 57.6 bits (139), Expect = 4e-09
Identities = 36/128 (28%), Positives = 68/128 (53%), Gaps = 3/128 (2%)
Query: 146 FGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHI 205
FG++GN LV+ K V + Y+ ++A+ DL+++ PF L W +G +
Sbjct: 41 FGLIGN-VLVIAVLIVKRFMFVVDVYLFNIAMSDLMLVF-SFPFI-IHNDLNEWIFGEFM 97
Query: 206 CKLSEATRDISIGVSVFTLTALSAERYCAIVNPIRSHISSKPLTIVTAFAIWVLAIILAL 265
CKL + ++F +T +S +RY +VN + S L+++ + A WV ++IL++
Sbjct: 98 CKLVLGVYFVGFFSNMFFVTLISIDRYILVVNATKIKNKSISLSVLLSVAAWVCSVILSM 157
Query: 266 PSALFSHV 273
P+ + +V
Sbjct: 158 PAMVLYYV 165
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 56.6 bits (136), Expect = 1e-08
Identities = 43/154 (27%), Positives = 81/154 (52%), Gaps = 19/154 (12%)
Query: 146 FGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYT-LESWPYGPH 204
G+ GN +++I K ++++ + YI +LA+ DL+ +I F +Y + W +G
Sbjct: 111 LGLFGNAAIIMILF-CKKIKTITDIYIFNLAISDLIFVI---DFPFIIYNEFDQWIFGDF 166
Query: 205 ICKLSEATRDISIGVSVFTLTALSAERYCAIVNPI-----RSHISSKPLTIVTAFAIWVL 259
+CK+ A+ I ++F +T +S +RY AI+ PI R+ L I++ W+L
Sbjct: 167 MCKVISASYYIGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCIIS----WIL 222
Query: 260 AIILALPSALF---SHVQPATTASNDTI--YFCS 288
++I+ P+ S++ + SN+TI Y C+
Sbjct: 223 SLIITSPAYFIFEASNIIFSAQDSNETISNYQCT 256
>gnl|CDD|220695 pfam10328, 7TM_GPCR_Srx, Serpentine type 7TM GPCR chemoreceptor
Srx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srx is part of the Srg
superfamily of chemoreceptors. Chemoperception is one of
the central senses of soil nematodes like C. elegans
which are otherwise 'blind' and 'deaf'.
Length = 275
Score = 37.9 bits (89), Expect = 0.009
Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 20/128 (15%)
Query: 146 FGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICG------VPFT-STLYTLES 198
FG++ N + IF + ++++ + A+ + IIC VP T L L
Sbjct: 6 FGIILNWLIFYIFLKLPSLKNSFGILCANKAISN--AIICTIFLFYVVPMTLLDLSFLPE 63
Query: 199 WPYGPHICKLSEATRDISIG---VSVFTLTALSAERYCAIVNPIRSH-ISSKPLTIVTAF 254
HI L I +G +S T +S R+CA+ P + I S T +
Sbjct: 64 LLNS-HIGGL------ILLGLYEISPLTHLLISLNRFCAVFFPFKYKKIFSIKNTKIIIT 116
Query: 255 AIWVLAII 262
IW++AII
Sbjct: 117 FIWIIAII 124
>gnl|CDD|223017 PHA03235, PHA03235, DNA packaging protein UL33; Provisional.
Length = 409
Score = 32.9 bits (75), Expect = 0.41
Identities = 47/235 (20%), Positives = 88/235 (37%), Gaps = 41/235 (17%)
Query: 157 IFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPY---GPHICKLSEATR 213
+ A + S P Y+ +L L +LL + +PF L + CK +
Sbjct: 58 LLANRVHGFSTPTLYMTNLYLANLLTVFV-LPFI----MLSNQGLLSGSVAGCKFASLLY 112
Query: 214 DISIGVSVFTLTALSAERYCAIVNPIRSHISSKPLTIVTAFAIWVLAIILALPSALFSHV 273
S V T+ ++A+RY I R+ S+ T W ++I + P+ +++ V
Sbjct: 113 YASCTVGFATVALIAADRYRVIHQRTRARSSAYRSTYKILGLTWFASLICSGPAPVYTTV 172
Query: 274 -----QPATTASNDT--IYFCSPFPIEYGQQYKQ----TVVLCKFLAYYLGPLCVIACFY 322
+T IYF Q V+L L + + P+ ++ FY
Sbjct: 173 VAHDDVDPEAPGYETCVIYF------RADQVKTVLSTFKVLLT--LVWGIAPVVMMTWFY 224
Query: 323 ILMARHLELSTRNMPGELLGQSSQSRARKKVAKMVSVLASSTLASTLSPYTSLVV 377
R L+ ++S + R + V +L S L +P+ ++++
Sbjct: 225 TFFYRTLK------------RASY-KKRSRTLTFVCILLLSFLCLQ-TPFVAIMI 265
>gnl|CDD|220691 pfam10323, 7TM_GPCR_Srv, Serpentine type 7TM GPCR chemoreceptor
Srv. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srv is a member of the
Srg superfamily of chemoreceptors. Chemoperception is
one of the central senses of soil nematodes like C.
elegans which are otherwise 'blind' and 'deaf'.
Length = 283
Score = 32.2 bits (74), Expect = 0.64
Identities = 33/194 (17%), Positives = 61/194 (31%), Gaps = 32/194 (16%)
Query: 223 TLTALSAERYCAIVNPIRSH---ISSKPLTIVTAFAIWVLAIILALPSALFSHVQPATTA 279
++ LS RY AI PI S L + W+ ++++L
Sbjct: 92 GISFLSTNRYLAICFPISRLTKIWQSARLWKIILIY-WLPGLLISLV-----------VL 139
Query: 280 SNDTIYFCSPFPIEYGQQYKQTVVLCKFLAYYLGPLCVIACFYILMARHLELST-RNMPG 338
N IY+ + + ++ + C Y ++A R
Sbjct: 140 KNTDIYYDNEENMPVVADKDVIQRFTLIALIFV----FVTCIYCIIAYGALFFVIRKKFN 195
Query: 339 ELLGQSSQSRARK-KVAKMVSVLASSTLASTLSPYTSLVVCLGNISTGICSVVVHLAVNY 397
+ S+S R+ ++A V +L + L L Y +T + +L Y
Sbjct: 196 KNSQTKSKSLKREVRLAFQVFILVLAFLI-ILIFYILSNYFSQTQNTD---PIFYLRALY 251
Query: 398 NMMS-------PWC 404
+ S P+
Sbjct: 252 PIASGLLSYINPYL 265
>gnl|CDD|192535 pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR chemoreceptor
Srsx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srsx is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 257
Score = 30.3 bits (69), Expect = 2.2
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 144 LPFGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFT 190
G+ GN ++++ + K +RS + I L DLL + + F
Sbjct: 1 SVIGIFGNVIMIILTFKKKKLRSKCSYLICVQCLADLLCLSGEIIFV 47
>gnl|CDD|220925 pfam10987, DUF2806, Protein of unknown function (DUF2806). This
bacterial family of proteins has no known function.
Length = 223
Score = 29.2 bits (66), Expect = 4.2
Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 13/116 (11%)
Query: 83 LERKCLISRSNGPDTLPIIPL-----PPVRCLFRNTRTSNFWLSKAKVGSQKLRKLLKLT 137
++ C ++ G D+ + L + LFR + T N L + + L L +L
Sbjct: 96 FQKACSLAVKVGGDSSLKLLLGYYKQGGLFSLFRKSSTENLNLGQFGLPYSSLLTLQELG 155
Query: 138 LTQFSELPFGVLGNGTLVLIFARHKNMRSVPNT-------YILSLALGDLLVIICG 186
L SEL G L + + K++ P + Y + GD L + G
Sbjct: 156 LLHSSELESGELPKDQYLPLSYSGKSLSLTPKSSGITLGYYRFT-PTGDELAQLIG 210
>gnl|CDD|215509 PLN02943, PLN02943, aminoacyl-tRNA ligase.
Length = 958
Score = 29.9 bits (67), Expect = 4.4
Identities = 27/91 (29%), Positives = 35/91 (38%), Gaps = 20/91 (21%)
Query: 45 VRTKFWCELERKCLTIGTH--------HGRPGEQINSLVRTKFWCELE---RKCLISRSN 93
R K W +LE L + R GE I LV +++ +E K L + N
Sbjct: 368 AREKLWSDLEETGLAVKKEPHTLRVPRSQRGGEVIEPLVSKQWFVTMEPLAEKALKAVEN 427
Query: 94 GPDTLPIIPLPPVRCLFRNTRTSNFWLSKAK 124
G L IIP R + N WLS K
Sbjct: 428 G--ELTIIPE-------RFEKIYNHWLSNIK 449
>gnl|CDD|177256 MTH00213, ND6, NADH dehydrogenase subunit 6; Provisional.
Length = 239
Score = 28.7 bits (64), Expect = 6.7
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 307 FLAYYLGPLCVIACFYILM---ARHLELSTRNMPGELLGQSSQSRARKKVAKMVSVLASS 363
FL Y+G +C+I F I+M T+ E + + R + +L +
Sbjct: 53 FLIVYVGAICIIFLFVIMMIPGGAKGFKPTKGNKKEKERKKGEETGRIGAPPAIGILIGA 112
Query: 364 TLASTLS 370
LA+ L+
Sbjct: 113 ILAAELA 119
>gnl|CDD|226165 COG3639, COG3639, ABC-type phosphate/phosphonate transport system,
permease component [Inorganic ion transport and
metabolism].
Length = 283
Score = 28.8 bits (65), Expect = 7.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 249 TIVTAFAIWVLAIILALPSALFS 271
T+ AFA +LA ILA+P A +
Sbjct: 94 TLAIAFAGTLLAAILAIPLAFLA 116
>gnl|CDD|237283 PRK13106, ubiA, prenyltransferase; Reviewed.
Length = 300
Score = 28.2 bits (63), Expect = 10.0
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 207 KLSEATRDISIGVSVFTLTALSAERYCAIVNPIRSHIS-SKP-LTIVTAFAIWVLAIILA 264
K+SEA I+ G+ +F +A R+ +++PI + I+ S P + TAFA + LA I
Sbjct: 94 KISEAKALITAGLILFFASAYLVNRWALLLSPIVALIAMSYPYMKRYTAFANYHLASIQG 153
Query: 265 LPSALFS 271
L A+FS
Sbjct: 154 L--AVFS 158
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.136 0.419
Gapped
Lambda K H
0.267 0.0798 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,534,840
Number of extensions: 2415105
Number of successful extensions: 2595
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2585
Number of HSP's successfully gapped: 24
Length of query: 522
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 421
Effective length of database: 6,457,848
Effective search space: 2718754008
Effective search space used: 2718754008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 61 (27.1 bits)