RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17390
(522 letters)
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 221 bits (565), Expect = 9e-68
Identities = 58/216 (26%), Positives = 100/216 (46%), Gaps = 10/216 (4%)
Query: 146 FGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHI 205
V+GN ++ I HK MR+V N ++++LA + + T W YG
Sbjct: 45 TSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNEWYYGLFY 104
Query: 206 CKLSEATRDISIGVSVFTLTALSAERYCAIVNPIRSHISSKPLTIVTAFAIWVLAIILAL 265
CK ++ S++++TA++ +RY AI++P++ + S T V IWVLA++LA
Sbjct: 105 CKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPLQPRL-SATATKVVICVIWVLALLLAF 163
Query: 266 PSALFSHVQPATTASNDTIYFCSP-FPIEYGQQYKQTVVLCKFLAYYLGPLCVIACFYIL 324
P +S + + C +P + Y++ +C + Y PL VI Y +
Sbjct: 164 PQGYYSTTET-----MPSRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTV 218
Query: 325 MARHLELSTRNMPGELLG-QSSQSRARKKVAKMVSV 359
+ L +PG+ Q A++KV KM+ V
Sbjct: 219 VGIT--LWASEIPGDSSDRYHEQVSAKRKVVKMMIV 252
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 191 bits (488), Expect = 9e-56
Identities = 66/215 (30%), Positives = 101/215 (46%), Gaps = 12/215 (5%)
Query: 146 FGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHI 205
G+LGN ++ + RH M++ N YI +LAL D LV++ +PF T L WP+G +
Sbjct: 138 GGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLVLLT-LPFQGTDILLGFWPFGNAL 196
Query: 206 CKLSEATRDISIGVSVFTLTALSAERYCAIVNPIRSHISSKP-LTIVTAFAIWVLAIILA 264
CK A ++ S FTLTA+S +RY AI +PIR+ AIW LA ++
Sbjct: 197 CKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWALASVVG 256
Query: 265 LPSALFSHVQPATTASNDTIYFCSPFPIEYGQQYKQTVVLCKFLAYYLGPLCVIACFYIL 324
+P A+ Q D C + +C FL ++ P+ VI+ Y L
Sbjct: 257 VPVAIMGSAQV-----EDEEIECLVEIPTPQDYWGPVFAICIFLFSFIVPVLVISVCYSL 311
Query: 325 MARHLELSTRNMPGELLGQSSQSRARKKVAKMVSV 359
M R L R + G + R +++ ++V V
Sbjct: 312 MIRRL-RGVRLLS----GSREKDRNLRRITRLVLV 341
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 150 bits (380), Expect = 3e-40
Identities = 45/185 (24%), Positives = 86/185 (46%), Gaps = 7/185 (3%)
Query: 146 FGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHI 205
G+ GN ++ + R+ M++ N YI +LAL D L +PF S Y + +WP+G +
Sbjct: 30 VGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATST-LPFQSVNYLMGTWPFGNIL 88
Query: 206 CKLSEATRDISIGVSVFTLTALSAERYCAIVNPIRSHISSKP-LTIVTAFAIWVLAIILA 264
CK+ + ++ S+FTL +S +RY A+ +P+++ P + W+L+ +
Sbjct: 89 CKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIG 148
Query: 265 LPSALFSHVQPATTASNDTIYFCSPFPIEYGQQYKQTVVLCKFLAYYLGPLCVIACFYIL 324
LP + + C+ ++ + +C F+ ++ P+ +I Y L
Sbjct: 149 LPVMFMATTKY-----RQGSIDCTLTFSHPTWYWENLLKICVFIFAFIMPVLIITVCYGL 203
Query: 325 MARHL 329
M L
Sbjct: 204 MILRL 208
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 145 bits (367), Expect = 3e-39
Identities = 45/234 (19%), Positives = 97/234 (41%), Gaps = 16/234 (6%)
Query: 146 FGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHI 205
G N + + +HK +R+ N +L+LA+ DL ++ G T + +GP
Sbjct: 51 LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTG 110
Query: 206 CKLSEATRDISIGVSVFTLTALSAERYCAIVNPIRSHISSKPLTIVTAFAIWVLAIILAL 265
C L + +++++L L+ ERY + P+ + + I+ WV+A+ A
Sbjct: 111 CNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAA 170
Query: 266 PSALFSHV---QPATTASNDTIYFCSP-FPIEYGQQYKQTVVLCKFLAYYLGPLCVIACF 321
P + + + C + + + ++ V+ F+ +++ PL VI
Sbjct: 171 PPLVGWSRYIPEGMQCS-------CGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFC 223
Query: 322 YILMARHLELSTRNMPGELLGQSSQSRARKKVAKMVSVLASSTLASTLSPYTSL 375
Y + ++ + ++ +A K+V +MV ++ + L PY +
Sbjct: 224 YGQLVFTVKEAAAQQQ----ESATTQKAEKEVTRMVIIMVIAFLIC-WLPYAGV 272
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 136 bits (345), Expect = 4e-35
Identities = 52/253 (20%), Positives = 100/253 (39%), Gaps = 20/253 (7%)
Query: 146 FGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHI 205
G++GNG ++L+ K +RS+ + Y L L++ DLL + +PF + + +W +G +
Sbjct: 61 TGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLF-VITLPFWAV-DAVANWYFGNFL 118
Query: 206 CKLSEATRDISIGVSVFTLTALSAERYCAIVNPIRSHISSKPL-TIVTAFAIWVLAIILA 264
CK +++ SV+ L +S +RY AIV+ S K L V +W+ A++L
Sbjct: 119 CKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLT 178
Query: 265 LPSALFSHVQPATTASNDTIYFCSP-FPIEYGQQYKQTVVLCKFLAYYLGPLCVIACFYI 323
+P +F++V D Y C +P + + + P VI Y
Sbjct: 179 IPDFIFANVSE-----ADDRYICDRFYP---NDLWVVVFQFQHIMVGLILPGIVILSCYC 230
Query: 324 LMARHLELSTRNMPGELLGQSSQSRARKKVAKMVSVLASSTLASTLSPYTSLVVCLGNIS 383
++ L S N+ + + ++ + + + N +
Sbjct: 231 IIISKLSHSGSNI--------FEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAA 282
Query: 384 TGICSVVVHLAVN 396
+ N
Sbjct: 283 KSELDKAIGRNTN 295
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 115 bits (290), Expect = 4e-28
Identities = 56/246 (22%), Positives = 106/246 (43%), Gaps = 28/246 (11%)
Query: 146 FGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLV-IICGVPFTSTLYTLESWPYGPH 204
G GNG ++ +F + K++++ N +I++LA D ++ G P + L+ W +G
Sbjct: 47 IGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCFLKKWIFGFA 106
Query: 205 ICKLSEATRDISIGVSVFTLTALSAERYCAIVNPIRSHISSKPLTIVTA----FAIWVLA 260
CK+ I +S+ T+ +S +RY I P+ +SK ++ A +W+ +
Sbjct: 107 ACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMA---ASKKMSHRRAFIMIIFVWLWS 163
Query: 261 IILALPSAL-FSHVQPATTASNDTIYFCSPFPIEYGQQYKQTV--VLCKFLAYYLGPLCV 317
++ A+ + N CS +Y + T +LC F+ + GP+ +
Sbjct: 164 VLWAIGPIFGWGAYTLEGVLCN-----CS---FDYISRDSTTRSNILCMFILGFFGPILI 215
Query: 318 IACFYILMARHLELSTRNMPG--------ELLGQSSQSRARKKVAKMVSVLASSTLASTL 369
I Y + + + M EL + + A ++AK+ V+ S L S
Sbjct: 216 IFFCYFNIVMSVSNHEKEMAAMAKRLNAKELRKAQAGANAEMRLAKISIVIVSQFLLS-W 274
Query: 370 SPYTSL 375
SPY +
Sbjct: 275 SPYAVV 280
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 96.7 bits (240), Expect = 1e-21
Identities = 51/285 (17%), Positives = 106/285 (37%), Gaps = 28/285 (9%)
Query: 146 FGVLGNGTLVLI-FARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPH 204
++GN LV++ ++++++V N ++ SLA DL++ + + + + WP GP
Sbjct: 36 VTIIGN-ILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPV 94
Query: 205 ICKLSEATRDISIGV-----SVFTLTALSAERYCAIVNPIR-SHISSKPLTIVTAFAIWV 258
+C L +++ SV L +S +RY + P+ + + + A WV
Sbjct: 95 VCDLW-----LALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWV 149
Query: 259 LAIILALPSALFSHVQPATTASNDTIYFCSPFPIEYGQQYKQTVVLCKFLAYYLGPLCVI 318
L+ IL P+ LF D + F A+YL P+ ++
Sbjct: 150 LSFILWAPAILFWQFIVGVRTVEDGECYIQ-FFSNAA--V---TFGTAIAAFYL-PVIIM 202
Query: 319 ACFYILMARHLELSTRNMPGELLGQSSQSRARKKVAKMVSVLASSTLASTLSPYTS---- 374
Y ++R + + + + + K ++ L + S +
Sbjct: 203 TVLYWHISRASKSRINIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSEL 262
Query: 375 ----LVVCLGNISTGICSVVVHLAVNYNMMSPWCHSIVPPVEDST 415
G I+ + + V+ + ++ + PV DS
Sbjct: 263 DKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSL 307
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 96.7 bits (240), Expect = 1e-21
Identities = 49/285 (17%), Positives = 100/285 (35%), Gaps = 28/285 (9%)
Query: 146 FGVLGNGTLVLI-FARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPH 204
V N LVL + + +V N YI+SL++ DL+V +P + W G
Sbjct: 21 VTVGLN-LLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSKWSLGRP 79
Query: 205 ICKLSEATRDISIGV-----SVFTLTALSAERYCAIVNPIR-SHISSKPLTIVTAFAIWV 258
+C +S+ S+F++ L +RY ++ P+R +K T W
Sbjct: 80 LCLFW-----LSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWF 134
Query: 259 LAIILALPSALFSHVQPATTASNDTIYFCSPFPIEYGQQYKQTVVLCKFLAYYLGPLCVI 318
L+ + +P ++H T+ + + V+ + +YL P ++
Sbjct: 135 LSFLWVIPILGWNHFMQQTSVRREDKCET---DFYDVTWF---KVMTAIINFYL-PTLLM 187
Query: 319 ACFYILMARHLELSTRNMPGELLGQSSQSRARKKVAKMVSVLASSTLASTLSP------- 371
FY + + + + + + + K ++ L + S
Sbjct: 188 LWFYAKIYKAVRQHCNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSEL 247
Query: 372 -YTSLVVCLGNISTGICSVVVHLAVNYNMMSPWCHSIVPPVEDST 415
G I+ + + V+ + ++ + PV DS
Sbjct: 248 DKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSL 292
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 95.7 bits (237), Expect = 4e-21
Identities = 41/243 (16%), Positives = 87/243 (35%), Gaps = 11/243 (4%)
Query: 146 FGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHI 205
F +L N ++L + K +I +LAL DLL + L ++ P
Sbjct: 76 FIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANL-LLSGATTYKLTPAQ 134
Query: 206 CKLSEATRDISIGVSVFTLTALSAERYCAIVNPIRSHISSKPLTIVTAFAIWVLAIILAL 265
L E + +++ SVF+L A++ ERY ++ + S+ + A WV+++IL
Sbjct: 135 WFLREGSMFVALSASVFSLLAIAIERYITMLKMKLHNGSNNFRLFLLISACWVISLILGG 194
Query: 266 PSALFSHVQPATTASNDTIYFCSPFPIEYGQQYKQTVVLCKFLAYYLGPLCVIACFYILM 325
+ + ++ + P +K ++ C + L VI I
Sbjct: 195 LPIMGWN----CISALSSCSTVLPL------YHKHYILFCTTVFTLLLLSIVILYCRIYS 244
Query: 326 ARHLELSTRNMPGELLGQSSQSRARKKVAKMVSVLASSTLASTLSPYTSLVVCLGNISTG 385
+ + + + + + + S + + L +G + G
Sbjct: 245 LVRTRNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNG 304
Query: 386 ICS 388
+ +
Sbjct: 305 VIT 307
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 94.0 bits (233), Expect = 1e-20
Identities = 46/274 (16%), Positives = 97/274 (35%), Gaps = 9/274 (3%)
Query: 146 FGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHI 205
+LGN + + N+++V N +++SLA D+ V + +PF + + H
Sbjct: 34 LAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPF--AITISTGFCAACHG 91
Query: 206 CKLSEATRDISIGVSVFTLTALSAERYCAIVNPIR-SHISSKPLTIVTAFAIWVLAIILA 264
C + S+F+L A++ +RY AI P+R + + + WVL+ +
Sbjct: 92 CLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIG 151
Query: 265 LPSALFSHVQPATTASNDTIYFCSPFPIEYGQQ---YKQTVVLCKFLAYYLGPLCVIACF 321
L L + + C + + +V F A L PL ++
Sbjct: 152 LTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGV 211
Query: 322 YI---LMARHLELSTRNMPGELLGQSSQSRARKKVAKMVSVLASSTLASTLSPYTSLVVC 378
Y+ L AR + + + + + + + S + + L
Sbjct: 212 YLRIFLAARRQLNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKA 271
Query: 379 LGNISTGICSVVVHLAVNYNMMSPWCHSIVPPVE 412
+G + G+ + + + I+ +
Sbjct: 272 IGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAK 305
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 91.3 bits (226), Expect = 1e-19
Identities = 50/280 (17%), Positives = 105/280 (37%), Gaps = 22/280 (7%)
Query: 146 FGVLGNGTLVLI-FARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPH 204
V GN LV+ A+ + +++V N +I SLA DL++ + VPF + ++ W +G
Sbjct: 53 AIVFGN-VLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNF 111
Query: 205 ICKLSEATRDISIGV-----SVFTLTALSAERYCAIVNPIR-SHISSKPLTIVTAFAIWV 258
C+ SI V S+ TL ++ +RY AI +P + + +K V +W+
Sbjct: 112 WCEFW-----TSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWI 166
Query: 259 LAIILALPSALFSHVQPATTASNDTIYFCSPF-PIEYGQQYKQTVVLCKFLAYYLGPLCV 317
++ + + + H AT Y Q Y + +++Y+ PL +
Sbjct: 167 VSGLTSFL-PIQMHWYRATHQEAINCYAEETCCDFFTNQAY---AIASSIVSFYV-PLVI 221
Query: 318 IACFYI---LMARHLELSTRNMPGELLGQSSQSRARKKVAKMVSVLASSTLASTLSPYTS 374
+ Y A+ + + + + + + + S + +
Sbjct: 222 MVFVYSRVFQEAKRQLNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSE 281
Query: 375 LVVCLGNISTGICSVVVHLAVNYNMMSPWCHSIVPPVEDS 414
L +G + G+ + + + I+ +
Sbjct: 282 LDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLK 321
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 90.1 bits (223), Expect = 2e-19
Identities = 40/224 (17%), Positives = 79/224 (35%), Gaps = 8/224 (3%)
Query: 146 FGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHI 205
+LGN + + N+++V N +++SLA D+ V + +PF + + H
Sbjct: 44 LAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPF--AITISTGFCAACHG 101
Query: 206 CKLSEATRDISIGVSVFTLTALSAERYCAIVNPIR-SHISSKPLTIVTAFAIWVLAIILA 264
C + S+F+L A++ +RY AI P+R + + + WVL+ +
Sbjct: 102 CLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIG 161
Query: 265 LPSALFSHVQPATTASNDTIYFCSPFP----IEYGQQYKQTVVLCKFLAYYLGPLCVIAC 320
L L + + C E V F + PL ++
Sbjct: 162 LTPMLGWNNCGQPKEGKNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLV-PLLLMLG 220
Query: 321 FYILMARHLELSTRNMPGELLGQSSQSRARKKVAKMVSVLASST 364
Y+ + ++ + + +K V + T
Sbjct: 221 VYLRIFLAARRQLADLEDNWETLNDNLKVIEKADNAAQVKDALT 264
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 88.8 bits (220), Expect = 6e-19
Identities = 43/183 (23%), Positives = 80/183 (43%), Gaps = 13/183 (7%)
Query: 146 FGVLGNGTLVLI-FARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLES-WPYGP 203
V GN LV+ A+ + +++V N +I SLA DL++ + VPF + L W +G
Sbjct: 195 AIVFGN-VLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPF-GAAHILTKTWTFGN 252
Query: 204 HICKLSEATRDISIG-VSVFTLTALSAERYCAIVNPIR-SHISSKPLTIVTAFAIWVLAI 261
C+ + D+ S+ TL ++ +RY AI +P + + +K V +W+++
Sbjct: 253 FWCEFWTSI-DVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSG 311
Query: 262 ILALPSALFSHVQPATTASNDTIYFCSPF-PIEYGQQYKQTVVLCKFLAYYLGPLCVIAC 320
+ + + H AT Y Q Y + +++Y+ PL ++
Sbjct: 312 LTSFLP-IQMHWYRATHQEAINCYAEETCCDFFTNQAY---AIASSIVSFYV-PLVIMVF 366
Query: 321 FYI 323
Y
Sbjct: 367 VYS 369
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 85.2 bits (211), Expect = 2e-18
Identities = 42/219 (19%), Positives = 89/219 (40%), Gaps = 13/219 (5%)
Query: 148 VLGNGTLVLI-FARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHIC 206
V GN LV+ + ++++ N +I SLA DL+V + VPF +TL +W +G +C
Sbjct: 26 VAGN-VLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLC 84
Query: 207 KLSEATRDISIG-VSVFTLTALSAERYCAIVNPIR-SHISSKPLTIVTAFAIWVLAIILA 264
+L + D+ S+ TL ++ +RY AI +P R + ++ V +W ++ +++
Sbjct: 85 ELWTSL-DVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVS 143
Query: 265 LPSALFSHVQPATTASNDTIYFCSPF-PIEYGQQYKQTVVLCKFLAYYLGPLCVIACFY- 322
+ H Y + Y + +++Y+ PL ++
Sbjct: 144 FLP-IMMHWWRDEDPQALKCYQDPGCCDFVTNRAY---AIASSIISFYI-PLLIMIFVAL 198
Query: 323 -ILMARHLELSTRNMPGELLGQSSQSRARKKVAKMVSVL 360
+ ++ + + K K + ++
Sbjct: 199 RVYREAKEQIRKIDRASKRKTSRVMLMREHKALKTLGII 237
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 86.0 bits (212), Expect = 5e-18
Identities = 46/242 (19%), Positives = 89/242 (36%), Gaps = 36/242 (14%)
Query: 146 FGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTL--ESWPYGP 203
V GNG + + + + +++ N ++SLA+ DLLV +P+ + W +
Sbjct: 51 AIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPW-VVYLEVTGGVWNFSR 109
Query: 204 HICKLSEATRDISIGV-----SVFTLTALSAERYCAIVNPIRSHISSKPLTIVTAF---- 254
C + +++ V S++ L A+S +RY A+V P+ + +
Sbjct: 110 ICCDVF-----VTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMIT 164
Query: 255 AIWVLAIILALPSALFSHV--QPATTASNDTIYFCSPFPIEYGQQYKQTVVLCKFLAYYL 312
A+WVLA ++ P + P + ++ + V+ +++YL
Sbjct: 165 AVWVLAFAVSCPLLFGFNTTGDPTVCSISNPDF----------------VIYSSVVSFYL 208
Query: 313 GPLCVIACFYILMARHLELSTRNMPGELLGQSSQSRARKKVAKMVSVLASSTLASTLSPY 372
P V Y + L+ R E+L R + T SP
Sbjct: 209 -PFGVTVLVYARIYVVLKQRRRKNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPS 267
Query: 373 TS 374
+
Sbjct: 268 LN 269
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.9 bits (144), Expect = 1e-09
Identities = 70/434 (16%), Positives = 128/434 (29%), Gaps = 97/434 (22%)
Query: 118 FWLSKAKVGS--------QKLRKLLKLTLTQFSELPFGVLGNGTLVLIFARHKNMRSVPN 169
FWL+ S QKL + T S+ I R ++++
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN---------IKLRIHSIQAELR 235
Query: 170 TYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHICKLSEATRDISIGVSVFTLTALSA 229
+ S + L+++ V ++ CK+ TR + LSA
Sbjct: 236 RLLKSKPYENCLLVLLNV---QNAKAWNAFNLS---CKILLTTRFKQV------TDFLSA 283
Query: 230 ERYCAIVNPIRSHISSKPLT---IVTAFAIWVLAIILALPS----------ALFS---HV 273
I S LT + + ++ LP ++ +
Sbjct: 284 ATTT----HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 274 QPATTASNDTIYFCSPFPIEYGQQY---KQTVVLCKFLAYYLGPLCVIACFYILMARHLE 330
AT + + K T ++ L L P F L
Sbjct: 340 GLAT--------------WDNWKHVNCDKLTTIIESSLNV-LEPAEYRKMFDRLSV--FP 382
Query: 331 LSTRNMPGELL----GQSSQSRARKKVAKMV--SVLASSTLASTLSPYTSLVVCLGNIST 384
S ++P LL +S V K+ S++ ST+S + + +
Sbjct: 383 PSA-HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441
Query: 385 GICSVVVH--LAVNYNMMSPWC-HSIVPPVEDSTLALALGFH-----QIQSFTKLSSVYT 436
+H + +YN+ + ++PP D +G H + T V+
Sbjct: 442 ---EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL 498
Query: 437 DVCELVVIHISQTQVVNLSYPSVVFGMSLRSLIIELDTYFSYRQIGDTSRAQCQMVLENM 496
D + ++ + S G S+ + + +L Y Y I D ++V +
Sbjct: 499 D------FRFLEQKIRHDSTAWNASG-SILNTLQQLKFYKPY--ICDNDPKYERLVNAIL 549
Query: 497 K-LVKYGRKRHFEK 509
L K K
Sbjct: 550 DFLPKIEENLICSK 563
Score = 31.4 bits (70), Expect = 1.0
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 26 FYCTYGTHHGRPGEQIN--SLVRTKF----WCELERKCLTIGTHHGRPGEQINSLVRTKF 79
FY G HH + E +L R F + LE+K T G +N+L + KF
Sbjct: 473 FYSHIG-HHLKNIEHPERMTLFRMVFLDFRF--LEQKIRHDSTAWNASGSILNTLQQLKF 529
Query: 80 W 80
+
Sbjct: 530 Y 530
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.4 bits (120), Expect = 1e-06
Identities = 69/431 (16%), Positives = 127/431 (29%), Gaps = 130/431 (30%)
Query: 120 LSKAKVGSQKLRKLLKLTLTQFSELPFGVLGNG---TLVLIFARHK-----NMRSVPNTY 171
+ +KVG ++L L LT+F E + L L + + + Y
Sbjct: 72 VEPSKVGQ--FDQVLNLCLTEF-ENCY--LEGNDIHALAAKLLQENDTTLVKTKELIKNY 126
Query: 172 ILSLALGDLLVIICGVPFTSTLYTLESWPYGPHICKLSEATRDISIGV-SVF-------- 222
I + + PF L A + + + ++F
Sbjct: 127 ITARIMA-------KRPFDK-----------KSNSALFRAVGEGNAQLVAIFGGQGNTDD 168
Query: 223 TLTALSA--ERYCAIVNPIRSHISSKPLTIVTAFAIWVLAIILALPSALFSHV------- 273
L + Y +V L +A + L +F+
Sbjct: 169 YFEELRDLYQTYHVLV---------GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 274 -QPATTASNDTIYFCS-P--FPIEYGQQYKQTVVLCKFLAYYLGPLCVIACFYILMARHL 329
P+ T D Y S P P+ + + + Y + + L
Sbjct: 220 ENPSNTPDKD--YLLSIPISCPL---------IGVIQLAHYV------VTA------KLL 256
Query: 330 ELSTRNMPGELLGQSSQSRARKK---VAKMVSVLASSTLASTLSPYTSLVVCLGNISTGI 386
+ PGEL + + A ++ + + S + L I G+
Sbjct: 257 GFT----PGELRSYLKGATGHSQGLVTAVAIA--ETDSWESFFVSVRKAITVLFFI--GV 308
Query: 387 CSVVVHLAVNYNMMSPWCHSIVPP--VEDS--------TLALAL-GFHQIQSFTKLSSVY 435
+ A P ++ +PP +EDS + L++ Q Q ++
Sbjct: 309 RC---YEAY------P--NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN 357
Query: 436 TDVCELVVIHISQTQVVNLSYPSVVFG--MSLRSLIIELDTYFSYRQI-GDTSRAQCQMV 492
+ + + IS +VN + VV G SL L + L R+ + Q ++
Sbjct: 358 SHLPAGKQVEIS---LVNGAKNLVVSGPPQSLYGLNLTL------RKAKAPSGLDQSRIP 408
Query: 493 LENMKLVKYGR 503
KL R
Sbjct: 409 FSERKLKFSNR 419
Score = 40.8 bits (95), Expect = 0.001
Identities = 63/321 (19%), Positives = 92/321 (28%), Gaps = 123/321 (38%)
Query: 25 LFYCTYGTHHGRPGEQINSLVRTKFWCELERKCLTIGTHHGRPG----------EQINSL 74
LF+ + P T + L G P EQ+
Sbjct: 303 LFFIGVRCYEAYP--------NTSLPPSILEDSLENN--EGVPSPMLSISNLTQEQVQDY 352
Query: 75 VRTKFWCEL--ERKCLISRSNGPDTLPIIPLPPVRCLFRNTRTSNFWLSKAKVGSQKLRK 132
V K L ++ IS NG L ++ PP + L+ N L KAK S
Sbjct: 353 VN-KTNSHLPAGKQVEISLVNGAKNL-VVSGPP-QSLYG----LNLTLRKAKAPS----- 400
Query: 133 LLKLTLTQFSELPFGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTST 192
L Q S +PF R N + L + PF S
Sbjct: 401 ----GLDQ-SRIPFS-----------ERKL---KFSNRF---------LPV--ASPFHSH 430
Query: 193 LYTLESWPYGPHICK-LSEATRDI---SIGVSVF---------TLTALSAER--YCAIVN 237
L P I K L + I + V+ L+ +ER C I
Sbjct: 431 LLV----PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRL 486
Query: 238 PIR---------SHI------SSKPLTIVTAFAI---WVLAIILALPSALFSHVQPATTA 279
P++ +HI + L ++T V +I+A L
Sbjct: 487 PVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGV-RVIVA--GTL-------DIN 536
Query: 280 SNDTIYFCSPFPIEYGQQYKQ 300
+D +YG +KQ
Sbjct: 537 PDD----------DYG--FKQ 545
Score = 35.4 bits (81), Expect = 0.055
Identities = 60/333 (18%), Positives = 101/333 (30%), Gaps = 112/333 (33%)
Query: 243 ISSKPLTIV-----TAFAI----WVLAIILALPSALFSHVQPATT---ASNDT------- 283
S++PLT+ + + +A L F+ + P T A++D
Sbjct: 4 YSTRPLTLSHGSLEHVLLVPTASFFIASQL---QEQFNKILPEPTEGFAADDEPTTPAEL 60
Query: 284 ----IYFCSPFPIEYGQ--QYKQ--TVVLCKFLAYYLG-----------------PLC-- 316
+ + S +E + Q+ Q + L +F YL L
Sbjct: 61 VGKFLGYVSS-LVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKT 119
Query: 317 --VIACFYILMARHLELSTRNMPGELLGQSSQSRA-RKKVAKMVSVL----ASST----L 365
+I + AR + P + S+ RA + A++V++ + L
Sbjct: 120 KELIKNYI--TARIMA----KRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL 173
Query: 366 ASTLSPYTSLV--------VCLGNISTGICSVVVHLAVNYNMMSPWCH--SIVPPVE--D 413
Y LV L + N++ W S P +
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE-WLENPSNTPDKDYLL 232
Query: 414 ST---------LALA--------LGFHQIQSFTKLSSVYTDVCELVV-IHISQTQVVNLS 455
S + LA LGF + + L LV + I++T S
Sbjct: 233 SIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD----S 288
Query: 456 YPSVVFGMSLRSLIIELDTYFSYRQIGDTSRAQ 488
+ S F +S+R I L F IG R
Sbjct: 289 WES--FFVSVRKAITVL---F---FIG--VRCY 311
Score = 33.1 bits (75), Expect = 0.30
Identities = 44/268 (16%), Positives = 67/268 (25%), Gaps = 106/268 (39%)
Query: 89 ISRSNGPDTLPIIPLPPV-RCLFRNTRTSNFWLSKAKVGSQKLRKLLK------------ 135
I +N P L I + + N F G K K+ K
Sbjct: 1664 IVINN-PVNLTIHFGGEKGKRIRENYSAMIF--ETIVDGKLKTEKIFKEINEHSTSYTFR 1720
Query: 136 -----LTLTQF--------SELPFGVL---GNGTLVLIFARHKNMRSVPNTYILSL---- 175
L+ TQF + F L G FA H SL
Sbjct: 1721 SEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGH------------SLGEYA 1768
Query: 176 ALGDLLVIICGV-PFTSTLYTLESWPYGPHI--CKLSEATRDISIGVSVFTLTALSAERY 232
A L + V S + + + A +G S + + A
Sbjct: 1769 A----LASLADVMSIESLVEVV-------FYRGMTMQVAVPRDELGRSNYGMIA------ 1811
Query: 233 CAIVNPIRSHISSKPLTIVTAFAIWVL-AIILALPSALFSHVQPATTASNDTIYFCSPFP 291
+NP R + +F+ L ++ + V+ N Y
Sbjct: 1812 ---INPGR---------VAASFSQEALQYVVERVGKRTGWLVEIV----N---YNVE--- 1849
Query: 292 IEYGQQYKQTVV---------LCKFLAY 310
QQY V + L +
Sbjct: 1850 ---NQQY---VAAGDLRALDTVTNVLNF 1871
Score = 32.3 bits (73), Expect = 0.45
Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 12/63 (19%)
Query: 336 MPGELLGQSSQSRARKKVAKMVSVLASSTLASTLSPYTSLVVCLGNISTGICSVVVHLAV 395
+P + LG+S+ ++ + + L +V +G + + +V
Sbjct: 1797 VPRDELGRSNYGMIAINPGRVAASFSQEALQY-------VVERVGKRTGWLVEIV----- 1844
Query: 396 NYN 398
NYN
Sbjct: 1845 NYN 1847
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein;
NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A
Length = 32
Score = 25.8 bits (57), Expect = 3.0
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 220 SVFTLTALSAERYCAIVNPIR 240
S+ L A+S +RY +I I
Sbjct: 3 SIVHLCAISLDRYWSITQAIE 23
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide,
pleckst homology domain, guanine-nucleotide releasing
factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus
musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Length = 347
Score = 28.8 bits (64), Expect = 4.6
Identities = 26/131 (19%), Positives = 39/131 (29%), Gaps = 6/131 (4%)
Query: 120 LSKAKVGSQKLRKLLKL--TLTQFSELPFGVLGNGTLVLIFARHKNMRSVPNTYILSLAL 177
L+ + LLKL + + F + N + K P I L
Sbjct: 206 LTYTFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKE----PRGIIPLENL 261
Query: 178 GDLLVIICGVPFTSTLYTLESWPYGPHICKLSEATRDISIGVSVFTLTALSAERYCAIVN 237
V P LY CK R + V+ ++A S E +
Sbjct: 262 SIREVEDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMK 321
Query: 238 PIRSHISSKPL 248
I++ IS P
Sbjct: 322 SIKASISRDPF 332
>2j2j_A Fiber protein; CAR, KNOB, head, fiber fibre, coxsackievirus,
adenovirus receptor, viral protein; 1.5A {Canine
adenovirus 2} SCOP: b.21.1.1 PDB: 2j1k_C 2w9l_C* 2wbv_A*
Length = 197
Score = 28.1 bits (62), Expect = 6.4
Identities = 7/39 (17%), Positives = 13/39 (33%)
Query: 90 SRSNGPDTLPIIPLPPVRCLFRNTRTSNFWLSKAKVGSQ 128
S P TL P P + +T ++ + +
Sbjct: 12 SPPAAPITLWTGPGPSINGFINDTPVIRCFICLTRDSNL 50
>2wmy_A WZB, putative acid phosphatase WZB; hydrolase; 2.21A {Escherichia
coli}
Length = 150
Score = 27.1 bits (61), Expect = 8.6
Identities = 6/8 (75%), Positives = 7/8 (87%)
Query: 375 LVVCLGNI 382
LV+C GNI
Sbjct: 12 LVICTGNI 19
>1knb_A Adenovirus type 5 fiber protein; cell receptor recognition; 1.70A
{Human adenovirus 5} SCOP: b.21.1.1
Length = 196
Score = 27.3 bits (60), Expect = 8.9
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 91 RSNGPDTLPIIPLPPVRCLFRNTRTSNFWLSKAKVGSQ 128
++N TL P P C + + L K GSQ
Sbjct: 9 KNNDKLTLWTTPAPSPNCRLNAEKDAKLTLVLTKCGSQ 46
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.136 0.419
Gapped
Lambda K H
0.267 0.0753 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,605,935
Number of extensions: 439647
Number of successful extensions: 888
Number of sequences better than 10.0: 1
Number of HSP's gapped: 843
Number of HSP's successfully gapped: 31
Length of query: 522
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 424
Effective length of database: 3,965,535
Effective search space: 1681386840
Effective search space used: 1681386840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 59 (26.5 bits)