RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17390
         (522 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 76.9 bits (188), Expect = 5e-16
 Identities = 44/263 (16%), Positives = 102/263 (38%), Gaps = 7/263 (2%)

Query: 146 FGVLGNGTLVLIFARHKNMRSVPNTYILSLALGDLLVIICGVPFTSTLYTLESWPYGPHI 205
            G   N   + +  +HK +R+  N  +L+LA+ DL ++  G   T        + +GP  
Sbjct: 50  LGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTG 109

Query: 206 CKLSEATRDISIGVSVFTLTALSAERYCAIVNPIRSHISSKPLTIVTAFAIWVLAIILAL 265
           C L      +   +++++L  L+ ERY  +  P+ +    +   I+     WV+A+  A 
Sbjct: 110 CNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAA 169

Query: 266 PSALFSHVQPATTASNDTIYFCSPFPIEYGQQYKQTVVLCKFLAYYLGPLCVIACFYILM 325
           P  +                    +   + +   ++ V+  F+ +++ PL VI   Y  +
Sbjct: 170 PPLVGWSRYI---PEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL 226

Query: 326 ARHLELSTRNMPGELLGQSSQSRARKKVAKMVSVLASSTLASTLSPYTSLVVCLGNISTG 385
              ++ +           ++  +A K+V +MV ++  + L   L           +  + 
Sbjct: 227 VFTVKEAAAQQQ----ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSD 282

Query: 386 ICSVVVHLAVNYNMMSPWCHSIV 408
              + + +   +   S   + ++
Sbjct: 283 FGPIFMTIPAFFAKTSAVYNPVI 305


>d2giva1 d.108.1.1 (A:4-274) Probable histone acetyltransferase
           MYST1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 271

 Score = 27.9 bits (62), Expect = 3.0
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 13/67 (19%)

Query: 282 DTIYFCSPFPIEYGQQYKQTVVLCKF-LAYYLGPLCVIACFYILMARHLELST-RNMPGE 339
           D  YF SPFP +YG+Q    + LC++ L Y          +      HL     R  PG+
Sbjct: 14  DAWYF-SPFPEDYGKQ--PKLWLCEYCLKYM--------KYEKSYRFHLGQCQWRQPPGK 62

Query: 340 LLGQSSQ 346
            + + S 
Sbjct: 63  EIYRKSN 69


>d1knba_ b.21.1.1 (A:) Adenovirus fiber protein "knob" domain {Human
           adenovirus type 5 [TaxId: 28285]}
          Length = 186

 Score = 25.9 bits (57), Expect = 8.3
 Identities = 11/36 (30%), Positives = 13/36 (36%)

Query: 93  NGPDTLPIIPLPPVRCLFRNTRTSNFWLSKAKVGSQ 128
           N   TL   P P   C     + +   L   K GSQ
Sbjct: 1   NDKLTLWTTPAPSPNCRLNAEKDAKLTLVLTKCGSQ 36


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.136    0.419 

Gapped
Lambda     K      H
   0.267   0.0636    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,853,969
Number of extensions: 82691
Number of successful extensions: 177
Number of sequences better than 10.0: 1
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 8
Length of query: 522
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 433
Effective length of database: 1,185,626
Effective search space: 513376058
Effective search space used: 513376058
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.2 bits)