BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17394
         (163 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4B1Z|M Chain M, Structure Of The Phactr1 Rpel Domain Bound To G-Actin
 pdb|4B1Z|N Chain N, Structure Of The Phactr1 Rpel Domain Bound To G-Actin
          Length = 115

 Score = 99.0 bits (245), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/115 (50%), Positives = 74/115 (64%), Gaps = 1/115 (0%)

Query: 2   LASKIARKDSLAIKLALRPDRQELIDRNILQVQSEKERQETKQVIGARLIRRLSMRPTVE 61
           LA K+ RKDSLAIKL+ RP ++EL ++NIL  Q+++ER E +Q IG +L RRLS RPT E
Sbjct: 1   LAMKVCRKDSLAIKLSNRPSKRELEEKNILPRQTDEERLELRQQIGTKLTRRLSQRPTAE 60

Query: 62  ELEDRNIXXXXXXXXXXXXXXXXXXXXXXXXSFRPTVDELKEKKI-IRFNDYIEV 115
           ELE RNI                        S RPTV+EL+E+KI IRF+DY+EV
Sbjct: 61  ELEQRNILKPRNEQEEQEEKREIKRRLTRKLSQRPTVEELRERKILIRFSDYVEV 115


>pdb|2YJF|M Chain M, Oligomeric Assembly Of Actin Bound To Mrtf-A
          Length = 137

 Score = 30.8 bits (68), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 25/36 (69%), Gaps = 1/36 (2%)

Query: 1   QLASKIAR-KDSLAIKLALRPDRQELIDRNILQVQS 35
           QL  K AR  D L  K+A RP+R EL+++NIL V+S
Sbjct: 88  QLKLKRARLADDLNEKIAQRPERMELVEKNILPVES 123


>pdb|2YJE|M Chain M, Oligomeric Assembly Of Actin Bound To Mrtf-A
          Length = 137

 Score = 27.7 bits (60), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 1   QLASKIAR-KDSLAIKLALRPDRQELIDRNILQVQS 35
           QL  K AR  D L  K+A RP   EL+++NIL V+S
Sbjct: 88  QLKLKRARLADDLNEKIAQRPGPMELVEKNILPVES 123


>pdb|3TPM|B Chain B, Crystal Structure Of Mal Rpel Domain In Complex With
           Importin-Alpha
          Length = 120

 Score = 27.7 bits (60), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 1   QLASKIAR-KDSLAIKLALRPDRQELIDRNILQVQS 35
           QL  K AR  D L  K+A RP   EL+++NIL V+S
Sbjct: 84  QLKLKRARLADDLNEKIAQRPGPMELVEKNILPVES 119


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.131    0.354 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,509,730
Number of Sequences: 62578
Number of extensions: 111005
Number of successful extensions: 313
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 293
Number of HSP's gapped (non-prelim): 14
length of query: 163
length of database: 14,973,337
effective HSP length: 91
effective length of query: 72
effective length of database: 9,278,739
effective search space: 668069208
effective search space used: 668069208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)