Query psy17394
Match_columns 163
No_of_seqs 179 out of 314
Neff 5.2
Searched_HMMs 46136
Date Fri Aug 16 21:20:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17394.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17394hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4339|consensus 100.0 1.1E-66 2.4E-71 469.0 13.4 163 1-163 367-529 (533)
2 KOG4339|consensus 99.7 3.8E-17 8.2E-22 148.6 5.3 115 4-118 408-523 (533)
3 PF02755 RPEL: RPEL repeat; I 98.9 8.6E-10 1.9E-14 63.8 2.6 25 48-72 1-25 (26)
4 smart00707 RPEL Repeat in Dros 98.8 2.1E-09 4.5E-14 62.2 2.3 25 48-72 1-25 (26)
5 PF02755 RPEL: RPEL repeat; I 98.6 3E-08 6.4E-13 57.3 2.5 25 10-34 1-25 (26)
6 smart00707 RPEL Repeat in Dros 98.6 4.8E-08 1E-12 56.5 2.6 25 10-34 1-25 (26)
7 PF07240 Turandot: Stress-indu 41.4 32 0.00068 25.1 2.9 26 127-152 23-48 (85)
8 PF11769 DUF3313: Protein of u 32.0 46 0.00099 26.6 2.8 37 109-146 45-83 (201)
9 PRK15321 putative type III sec 29.0 45 0.00097 25.4 2.1 20 130-149 32-51 (120)
10 PF11304 DUF3106: Protein of u 25.0 55 0.0012 24.3 1.9 21 128-148 55-75 (107)
11 PF10845 DUF2576: Protein of u 24.3 50 0.0011 21.6 1.4 13 138-150 14-26 (48)
12 PF10930 DUF2737: Protein of u 23.2 57 0.0012 21.9 1.5 18 19-36 24-41 (54)
13 cd07355 HN_L-delphilin-R2_like 20.6 96 0.0021 22.4 2.4 19 132-150 16-34 (80)
14 PF04912 Dynamitin: Dynamitin 20.2 87 0.0019 27.9 2.6 50 103-153 54-111 (388)
No 1
>KOG4339|consensus
Probab=100.00 E-value=1.1e-66 Score=469.01 Aligned_cols=163 Identities=75% Similarity=1.084 Sum_probs=161.9
Q ss_pred ChhhhhhhhhHHHHHhcCCCChHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHhcCCCChhHHHHCCCCCCCcHHHHHHH
Q psy17394 1 QLASKIARKDSLAIKLALRPDRQELIDRNILQVQSEKERQETKQVIGARLIRRLSMRPTVEELEDRNILKKQTAAEEKKL 80 (163)
Q Consensus 1 ~la~kv~rkd~L~~kL~~RP~~~eL~~rnIL~~~s~~~~~l~r~~~~d~L~rkL~~RP~~eELv~rnIL~~~~~~~~~~~ 80 (163)
+||+||||||+|+.||.+||++.||+++||||.+++++|++.|++|+.+|.|+||+|||+|||++||||+..+.+.++.+
T Consensus 367 ~la~Kv~RKDtLAlKL~nRPsKqELe~rNIlpr~tDeErkEiRqqIG~kLiRRLSqRPT~EELEqRNILK~kn~~~eqe~ 446 (533)
T KOG4339|consen 367 GLASKVARKDTLALKLDNRPSKQELEDRNILPRTTDEERKEIRQQIGTKLIRRLSQRPTPEELEQRNILKRKNEAEEQEA 446 (533)
T ss_pred hHHHHHhhhhhhhhhhcCCCchhhhhhcccccccCHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhhhhcccChhhHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhcCCCChHHHhhhhhccccccceecccccCCCCCCCCCCcCCHHhHHHHHHHHHHhhhhcccccccccc
Q psy17394 81 KEEKKKMLLRKLSFRPTVDELKEKKIIRFNDYIEVTQAHDYDRRADKPWTRLTPKDKAAIRKELNEFKSSEMEVHQESRH 160 (163)
Q Consensus 81 k~~~k~~L~~kLs~RPt~~eL~~k~IL~F~~~Vev~~~~~ydrr~d~~~~rLtp~~~~~Ir~eLn~~k~~em~vh~~sr~ 160 (163)
++++|+.|.|||++||||.||.+++||+|++||||+++.|||||+||||+||||+|||+||+|||+||++||+||++|||
T Consensus 447 k~E~k~rL~RKLs~RPTV~EL~~rkiirFndYvEVt~a~dYDRraDKPWtrLtpaDKAaIRKELNefKssEMeVHeeSrh 526 (533)
T KOG4339|consen 447 KEEKKRRLLRKLSFRPTVAELKERKIIRFNDYVEVTQAQDYDRRADKPWTRLTPADKAAIRKELNEFKSSEMEVHEESRH 526 (533)
T ss_pred HHHHHHHHHHhhccCccHHHHhhhheeeccceeeeccccccccccCCcccccChhhHHHHHHHHhhhccchhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q psy17394 161 LTR 163 (163)
Q Consensus 161 ~t~ 163 (163)
|||
T Consensus 527 fTR 529 (533)
T KOG4339|consen 527 FTR 529 (533)
T ss_pred ccc
Confidence 998
No 2
>KOG4339|consensus
Probab=99.67 E-value=3.8e-17 Score=148.63 Aligned_cols=115 Identities=30% Similarity=0.417 Sum_probs=105.9
Q ss_pred hhhhhhhHHHHHhcCCCChHHHhhhCCCCCCcHHHHHHHHHHHHHHHHHHhcCCCChhHHHHCCCCCCCcHHHHHHHHHH
Q psy17394 4 SKIARKDSLAIKLALRPDRQELIDRNILQVQSEKERQETKQVIGARLIRRLSMRPTVEELEDRNILKKQTAAEEKKLKEE 83 (163)
Q Consensus 4 ~kv~rkd~L~~kL~~RP~~~eL~~rnIL~~~s~~~~~l~r~~~~d~L~rkL~~RP~~eELv~rnIL~~~~~~~~~~~k~~ 83 (163)
.|-.-+..|.+||++||+.+||++||||+.++.++.++++..++..|.|||++|||++||.+|.||.|+...+..++.++
T Consensus 408 iRqqIG~kLiRRLSqRPT~EELEqRNILK~kn~~~eqe~k~E~k~rL~RKLs~RPTV~EL~~rkiirFndYvEVt~a~dY 487 (533)
T KOG4339|consen 408 IRQQIGTKLIRRLSQRPTPEELEQRNILKRKNEAEEQEAKEEKKRRLLRKLSFRPTVAELKERKIIRFNDYVEVTQAQDY 487 (533)
T ss_pred HHHHHHHHHHHHhhcCCCHHHHHHhhhhcccChhhHHHHHHHHHHHHHHhhccCccHHHHhhhheeeccceeeecccccc
Confidence 45567899999999999999999999999999999999999999999999999999999999999999777666676777
Q ss_pred HHHHhhhhhcCCCChHHHhhhhhcccccc-ceeccc
Q psy17394 84 KKKMLLRKLSFRPTVDELKEKKIIRFNDY-IEVTQA 118 (163)
Q Consensus 84 ~k~~L~~kLs~RPt~~eL~~k~IL~F~~~-Vev~~~ 118 (163)
..+.-..|....|.....|.|-...|.+. ++||+.
T Consensus 488 DRraDKPWtrLtpaDKAaIRKELNefKssEMeVHee 523 (533)
T KOG4339|consen 488 DRRADKPWTRLTPADKAAIRKELNEFKSSEMEVHEE 523 (533)
T ss_pred ccccCCcccccChhhHHHHHHHHhhhccchhhhhhc
Confidence 78888999999999999999999999887 999974
No 3
>PF02755 RPEL: RPEL repeat; InterPro: IPR004018 The RPEL repeat is named after four conserved amino acids it contains. The function of the RPEL repeat is unknown however it might be a DNA binding repeat based on the observation that Q9VZY2 from SWISSPROT contains a SAP domain that is also implicated in DNA binding.; PDB: 2YJE_M 2V52_M 2YJF_M 2V51_E.
Probab=98.91 E-value=8.6e-10 Score=63.76 Aligned_cols=25 Identities=60% Similarity=0.800 Sum_probs=17.2
Q ss_pred HHHHHHhcCCCChhHHHHCCCCCCC
Q psy17394 48 ARLIRRLSMRPTVEELEDRNILKKQ 72 (163)
Q Consensus 48 d~L~rkL~~RP~~eELv~rnIL~~~ 72 (163)
|.|++||++||+++|||++|||+++
T Consensus 1 D~L~~kl~~RP~~~eLv~r~IL~~~ 25 (26)
T PF02755_consen 1 DSLERKLSQRPTREELVERNILKED 25 (26)
T ss_dssp HHHHHHHHT---HHHHHHTTSS-SS
T ss_pred ChHHHHHhcCCCHHHHHHcCCCCCC
Confidence 6788888888888888888888765
No 4
>smart00707 RPEL Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2.
Probab=98.83 E-value=2.1e-09 Score=62.16 Aligned_cols=25 Identities=64% Similarity=0.814 Sum_probs=19.1
Q ss_pred HHHHHHhcCCCChhHHHHCCCCCCC
Q psy17394 48 ARLIRRLSMRPTVEELEDRNILKKQ 72 (163)
Q Consensus 48 d~L~rkL~~RP~~eELv~rnIL~~~ 72 (163)
|.|++||++||+++|||++|||++.
T Consensus 1 d~L~~kl~~RP~~eeLv~r~IL~~~ 25 (26)
T smart00707 1 DVLNRKLSQRPTREELEERNILKEL 25 (26)
T ss_pred ChHHHHHHcCCCHHHHHHccCCCCC
Confidence 4677888888888888888888764
No 5
>PF02755 RPEL: RPEL repeat; InterPro: IPR004018 The RPEL repeat is named after four conserved amino acids it contains. The function of the RPEL repeat is unknown however it might be a DNA binding repeat based on the observation that Q9VZY2 from SWISSPROT contains a SAP domain that is also implicated in DNA binding.; PDB: 2YJE_M 2V52_M 2YJF_M 2V51_E.
Probab=98.60 E-value=3e-08 Score=57.34 Aligned_cols=25 Identities=56% Similarity=0.857 Sum_probs=19.7
Q ss_pred hHHHHHhcCCCChHHHhhhCCCCCC
Q psy17394 10 DSLAIKLALRPDRQELIDRNILQVQ 34 (163)
Q Consensus 10 d~L~~kL~~RP~~~eL~~rnIL~~~ 34 (163)
|+|++||++||+++||+++|||+..
T Consensus 1 D~L~~kl~~RP~~~eLv~r~IL~~~ 25 (26)
T PF02755_consen 1 DSLERKLSQRPTREELVERNILKED 25 (26)
T ss_dssp HHHHHHHHT---HHHHHHTTSS-SS
T ss_pred ChHHHHHhcCCCHHHHHHcCCCCCC
Confidence 7899999999999999999999864
No 6
>smart00707 RPEL Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2.
Probab=98.56 E-value=4.8e-08 Score=56.50 Aligned_cols=25 Identities=52% Similarity=0.700 Sum_probs=23.3
Q ss_pred hHHHHHhcCCCChHHHhhhCCCCCC
Q psy17394 10 DSLAIKLALRPDRQELIDRNILQVQ 34 (163)
Q Consensus 10 d~L~~kL~~RP~~~eL~~rnIL~~~ 34 (163)
|+|.+||++||+++||+++|||+..
T Consensus 1 d~L~~kl~~RP~~eeLv~r~IL~~~ 25 (26)
T smart00707 1 DVLNRKLSQRPTREELEERNILKEL 25 (26)
T ss_pred ChHHHHHHcCCCHHHHHHccCCCCC
Confidence 6899999999999999999999864
No 7
>PF07240 Turandot: Stress-inducible humoral factor Turandot; InterPro: IPR010825 This family consists of several Drosophila species specific Turandot proteins. The Turandot A (TotA) gene encodes a humoral factor, which is secreted from the fat body and accumulates in the body fluids. TotA is strongly induced upon bacterial challenge, as well as by other types of stress such as high temperature, mechanical pressure, dehydration, UV irradiation, and oxidative agents. It is also upregulated during metamorphosis and at high age. Flies that overexpress TotA show prolonged survival and retain normal activity at otherwise lethal temperatures. Although TotA is only induced by severe stress, it responds to a much wider range of stimuli than heat shock genes such as hsp70 or immune genes such as Cecropin A1 [].
Probab=41.41 E-value=32 Score=25.08 Aligned_cols=26 Identities=27% Similarity=0.507 Sum_probs=22.8
Q ss_pred CCCCcCCHHhHHHHHHHHHHhhhhcc
Q psy17394 127 KPWTRLTPKDKAAIRKELNEFKSSEM 152 (163)
Q Consensus 127 ~~~~rLtp~~~~~Ir~eLn~~k~~em 152 (163)
+|+..|||++.++|=..+|+|+...+
T Consensus 23 ~~~~~L~~~~r~~~d~~i~~y~~~~~ 48 (85)
T PF07240_consen 23 SPRLPLTPQDRQRIDRFIRRYKEENN 48 (85)
T ss_pred CccCCCCHHHHHHHHHHHHHHHHHhh
Confidence 57888999999999999999998543
No 8
>PF11769 DUF3313: Protein of unknown function (DUF3313); InterPro: IPR021747 This a bacterial family of proteins which are annotated as putative lipoproteins.
Probab=32.01 E-value=46 Score=26.58 Aligned_cols=37 Identities=16% Similarity=0.422 Sum_probs=27.8
Q ss_pred cccc--ceecccccCCCCCCCCCCcCCHHhHHHHHHHHHH
Q psy17394 109 FNDY--IEVTQAHDYDRRADKPWTRLTPKDKAAIRKELNE 146 (163)
Q Consensus 109 F~~~--Vev~~~~~ydrr~d~~~~rLtp~~~~~Ir~eLn~ 146 (163)
|+.| |.+.+..-|.+ ++.+|..|++.+.+.+...++.
T Consensus 45 ~~~Y~~v~i~Pv~~~~~-~~~~~~~l~~~~~~~l~~~~~~ 83 (201)
T PF11769_consen 45 LAQYTKVIIEPVEVYPG-PDATWQGLSDADLQQLANYFDR 83 (201)
T ss_pred hhhCcEEEEeeEEEEec-CCcccccCCHHHHHHHHHHHHH
Confidence 4444 55555666766 8899999999999998887764
No 9
>PRK15321 putative type III secretion system effector protein OrgC; Provisional
Probab=29.02 E-value=45 Score=25.35 Aligned_cols=20 Identities=30% Similarity=0.409 Sum_probs=16.6
Q ss_pred CcCCHHhHHHHHHHHHHhhh
Q psy17394 130 TRLTPKDKAAIRKELNEFKS 149 (163)
Q Consensus 130 ~rLtp~~~~~Ir~eLn~~k~ 149 (163)
--=+|+.|..|-.|+|+||-
T Consensus 32 la~S~~~KD~I~q~m~~F~d 51 (120)
T PRK15321 32 SASSETLKDSIYQEMNAFKD 51 (120)
T ss_pred ccCcHHHHHHHHHHHHHhCC
Confidence 33468899999999999993
No 10
>PF11304 DUF3106: Protein of unknown function (DUF3106); InterPro: IPR021455 Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.
Probab=25.04 E-value=55 Score=24.26 Aligned_cols=21 Identities=29% Similarity=0.763 Sum_probs=10.5
Q ss_pred CCCcCCHHhHHHHHHHHHHhh
Q psy17394 128 PWTRLTPKDKAAIRKELNEFK 148 (163)
Q Consensus 128 ~~~rLtp~~~~~Ir~eLn~~k 148 (163)
.|..|||.....++...-.|+
T Consensus 55 ~W~~LspeqR~~~R~~~~~~~ 75 (107)
T PF11304_consen 55 RWAALSPEQRQQARENYQRFK 75 (107)
T ss_pred HHHhCCHHHHHHHHHHHHHHH
Confidence 355555555555555444444
No 11
>PF10845 DUF2576: Protein of unknown function (DUF2576); InterPro: IPR022556 The function of this viral family of proteins is unknown. The entry contains Orf5 from Autographa californica nuclear polyhedrosis virus (AcMNPV).
Probab=24.34 E-value=50 Score=21.56 Aligned_cols=13 Identities=38% Similarity=0.726 Sum_probs=11.2
Q ss_pred HHHHHHHHHhhhh
Q psy17394 138 AAIRKELNEFKSS 150 (163)
Q Consensus 138 ~~Ir~eLn~~k~~ 150 (163)
.+||.|||+++..
T Consensus 14 eqlrrelnsLR~~ 26 (48)
T PF10845_consen 14 EQLRRELNSLRRS 26 (48)
T ss_pred HHHHHHHHHHHHH
Confidence 6799999999874
No 12
>PF10930 DUF2737: Protein of unknown function (DUF2737); InterPro: IPR020295 The proteins in this entry are uncharacterised.
Probab=23.24 E-value=57 Score=21.86 Aligned_cols=18 Identities=33% Similarity=0.584 Sum_probs=14.1
Q ss_pred CCChHHHhhhCCCCCCcH
Q psy17394 19 RPDRQELIDRNILQVQSE 36 (163)
Q Consensus 19 RP~~~eL~~rnIL~~~s~ 36 (163)
=|+++||..+|-+|.-+.
T Consensus 24 mPsREELlkRnSFpsvn~ 41 (54)
T PF10930_consen 24 MPSREELLKRNSFPSVNN 41 (54)
T ss_pred CCCHHHHHhhcCCCCCch
Confidence 379999999998886543
No 13
>cd07355 HN_L-delphilin-R2_like Second harmonin_N_like domain (repeat 2) of L-delphilin, and related domains. This subgroup contains the second of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin), and related domains. Delphilin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain in L-delphilin follows the second PDZ protein-binding domain, PDZ2; it is also found in the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta). It is a putative protein-binding module based on its sequence similarity to the harmonin N-domain. The first harmonin_N_like domain of L-delphilin belongs to a different subgroup and is missing from S-delphilin.
Probab=20.58 E-value=96 Score=22.41 Aligned_cols=19 Identities=32% Similarity=0.641 Sum_probs=17.6
Q ss_pred CCHHhHHHHHHHHHHhhhh
Q psy17394 132 LTPKDKAAIRKELNEFKSS 150 (163)
Q Consensus 132 Ltp~~~~~Ir~eLn~~k~~ 150 (163)
|||.....|++-||+|.-+
T Consensus 16 Lt~~ER~~i~qaL~~y~~~ 34 (80)
T cd07355 16 LTPPERYGIKKALEDYFQH 34 (80)
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999864
No 14
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=20.22 E-value=87 Score=27.87 Aligned_cols=50 Identities=28% Similarity=0.542 Sum_probs=33.6
Q ss_pred hhhhccccccceecccccCCCC-------CCCCCCcCCHHhH-HHHHHHHHHhhhhccc
Q psy17394 103 EKKIIRFNDYIEVTQAHDYDRR-------ADKPWTRLTPKDK-AAIRKELNEFKSSEME 153 (163)
Q Consensus 103 ~k~IL~F~~~Vev~~~~~ydrr-------~d~~~~rLtp~~~-~~Ir~eLn~~k~~em~ 153 (163)
..+-+.||+.|.---...|..+ ||..=..=||..+ ++++.|+.+++. ||+
T Consensus 54 da~~vDFSd~i~~krr~~~~~~~~~~e~~g~~~~e~Es~~~kl~RL~~Ev~EL~e-El~ 111 (388)
T PF04912_consen 54 DARGVDFSDRISKKRRSGYRSRSGEYEILGDDSSEKESPEQKLQRLRREVEELKE-ELE 111 (388)
T ss_pred CCCCCCchhhcccccccccccCCCceeecCCCCCCcCCHHHHHHHHHHHHHHHHH-HHH
Confidence 4566788888776555555443 2211245688888 789999999997 554
Done!