Query psy17394
Match_columns 163
No_of_seqs 179 out of 314
Neff 5.2
Searched_HMMs 13730
Date Fri Aug 16 21:21:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17394.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17394hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2jxca1 a.39.1.6 (A:121-215) E 34.1 14 0.00099 23.6 2.8 20 128-148 1-20 (95)
2 d1l0oc_ a.4.13.2 (C:) SigmaF { 19.0 41 0.003 19.5 2.7 24 42-65 16-39 (57)
3 d1q8ya_ d.144.1.7 (A:) Sky1p { 18.9 70 0.0051 23.5 4.8 53 78-130 302-358 (362)
4 d1ku2a1 a.4.13.1 (A:273-332) S 12.6 83 0.006 18.4 3.0 23 44-66 15-37 (60)
5 d2awia1 a.35.1.11 (A:2-66) Prg 11.7 21 0.0015 21.7 -0.2 24 138-161 8-41 (65)
6 d1c07a_ a.39.1.6 (A:) Eps15 {H 10.0 79 0.0057 19.4 2.3 19 128-147 1-19 (95)
7 d2hkja1 a.156.1.3 (A:229-306) 8.7 1.2E+02 0.0086 18.1 2.7 24 125-148 53-76 (78)
8 d2j0td1 b.40.3.1 (D:1-124) TIM 8.2 66 0.0048 21.0 1.4 16 127-142 103-118 (124)
9 d1rp3a1 a.4.13.1 (A:87-163) Si 7.9 1.5E+02 0.011 17.3 3.0 22 44-65 13-34 (77)
10 d1ug3a2 a.118.1.14 (A:1438-156 7.6 1.4E+02 0.01 19.4 3.0 23 43-65 4-26 (127)
No 1
>d2jxca1 a.39.1.6 (A:121-215) Eps15 {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.10 E-value=14 Score=23.58 Aligned_cols=20 Identities=30% Similarity=0.757 Sum_probs=17.6
Q ss_pred CCCcCCHHhHHHHHHHHHHhh
Q psy17394 128 PWTRLTPKDKAAIRKELNEFK 148 (163)
Q Consensus 128 ~~~rLtp~~~~~Ir~eLn~~k 148 (163)
||+ |||.+.+.++.-++.|-
T Consensus 1 pw~-ls~ee~~~y~~~F~~~D 20 (95)
T d2jxca1 1 PWA-VKPEDKAKYDAIFDSLS 20 (95)
T ss_dssp CCS-SCHHHHHHHHHHHHHTC
T ss_pred CCc-CCHHHHHHHHHHHHHhC
Confidence 798 99999999998887775
No 2
>d1l0oc_ a.4.13.2 (C:) SigmaF {Bacillus stearothermophilus [TaxId: 1422]}
Probab=18.96 E-value=41 Score=19.49 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHH
Q psy17394 42 TKQVIGARLIRRLSMRPTVEELED 65 (163)
Q Consensus 42 ~r~~~~d~L~rkL~~RP~~eELv~ 65 (163)
.-.+....|...|..-||.+||-+
T Consensus 16 ki~~~~~~l~q~lgRePT~~EiA~ 39 (57)
T d1l0oc_ 16 KIRKAKDELSKTRGRAPTVTEIAD 39 (57)
T ss_dssp HHHHHHHHHHHHHTSCCBHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHH
Confidence 345577888999999999999865
No 3
>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=18.95 E-value=70 Score=23.52 Aligned_cols=53 Identities=19% Similarity=0.213 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhhhhhcCCCChHHHhhhhhcc---ccccceecccccCCCCCC-CCCC
Q psy17394 78 KKLKEEKKKMLLRKLSFRPTVDELKEKKIIR---FNDYIEVTQAHDYDRRAD-KPWT 130 (163)
Q Consensus 78 ~~~k~~~k~~L~~kLs~RPt~~eL~~k~IL~---F~~~Vev~~~~~ydrr~d-~~~~ 130 (163)
...++++.++|.--=..|||..++.+-..++ ..+.+.+-+..-|.+..| ++|.
T Consensus 302 ~~~~dll~~mL~~dP~~Rpta~e~L~Hp~f~~~~~~~~~~~p~~~~~~~~~~~~~~~ 358 (362)
T d1q8ya_ 302 KEISDFLSPMLQLDPRKRADAGGLVNHPWLKDTLGMEEIRVPDRELYGSGSDIPGWF 358 (362)
T ss_dssp HHHHHHHGGGGCSSTTTCBCHHHHHTCGGGTTCTTCTTCCCTTSCTTCBSTTSTTSS
T ss_pred HHHHHHHHHHCCCChhHCcCHHHHhcCcccCCCCCcccCCCCCcccCCCCCCCCchh
Confidence 4556778888888888999999988766553 223344445777888888 5673
No 4
>d1ku2a1 a.4.13.1 (A:273-332) Sigma factor SigA {Thermus aquaticus [TaxId: 271]}
Probab=12.59 E-value=83 Score=18.37 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCCCChhHHHHC
Q psy17394 44 QVIGARLIRRLSMRPTVEELEDR 66 (163)
Q Consensus 44 ~~~~d~L~rkL~~RP~~eELv~r 66 (163)
.++...|.+.+..-||.+||-+.
T Consensus 15 ~r~~~~l~qe~gRePt~eEiA~~ 37 (60)
T d1ku2a1 15 SRTARQLQQELGREPSYEEIAEA 37 (60)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHH
Confidence 34566778888888888888664
No 5
>d2awia1 a.35.1.11 (A:2-66) PrgX {Enterococcus faecalis [TaxId: 1351]}
Probab=11.67 E-value=21 Score=21.68 Aligned_cols=24 Identities=42% Similarity=0.535 Sum_probs=16.5
Q ss_pred HHHHHHHHHh----------hhhccccccccccc
Q psy17394 138 AAIRKELNEF----------KSSEMEVHQESRHL 161 (163)
Q Consensus 138 ~~Ir~eLn~~----------k~~em~vh~~sr~~ 161 (163)
.+||+|||-. |+..+.|..|||+.
T Consensus 8 kqir~elnyhqidlysgimsksiyikveadsrpi 41 (65)
T d2awia1 8 KQIRQELNYHQIDLYSGIMSKSVYIKVEADSRPI 41 (65)
T ss_dssp HHHHHHTTCCHHHHHTTTSCHHHHHHHHTTCSCC
T ss_pred HHHHHHhhhhHhHHHhhhcccceEEEEecCCCcc
Confidence 4699999854 44466777777753
No 6
>d1c07a_ a.39.1.6 (A:) Eps15 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.03 E-value=79 Score=19.43 Aligned_cols=19 Identities=21% Similarity=0.496 Sum_probs=14.6
Q ss_pred CCCcCCHHhHHHHHHHHHHh
Q psy17394 128 PWTRLTPKDKAAIRKELNEF 147 (163)
Q Consensus 128 ~~~rLtp~~~~~Ir~eLn~~ 147 (163)
+|. |||.+++.++.-++.|
T Consensus 1 ~w~-lt~~e~~~~~~~F~~~ 19 (95)
T d1c07a_ 1 TWV-VSPAEKAKYDEIFLKT 19 (95)
T ss_dssp CCS-SCSHHHHHHHHHHHHH
T ss_pred CCc-CCHHHHHHHHHHHHHH
Confidence 575 9999999887766655
No 7
>d2hkja1 a.156.1.3 (A:229-306) Topoisomerase VI-B subunit middle domain {Archaeon Sulfolobus shibatae [TaxId: 2286]}
Probab=8.69 E-value=1.2e+02 Score=18.09 Aligned_cols=24 Identities=13% Similarity=0.320 Sum_probs=20.0
Q ss_pred CCCCCCcCCHHhHHHHHHHHHHhh
Q psy17394 125 ADKPWTRLTPKDKAAIRKELNEFK 148 (163)
Q Consensus 125 ~d~~~~rLtp~~~~~Ir~eLn~~k 148 (163)
++.++..||+.+...|-+.+.+|+
T Consensus 53 P~~~~~~L~~~e~~~L~~air~~~ 76 (78)
T d2hkja1 53 PNKKVKNLTEEEITRLVETFKKYE 76 (78)
T ss_dssp TTSBGGGCCHHHHHHHHHHHHHCC
T ss_pred cccccccCCHHHHHHHHHHHhhhh
Confidence 557899999999999888877765
No 8
>d2j0td1 b.40.3.1 (D:1-124) TIMP-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.17 E-value=66 Score=21.00 Aligned_cols=16 Identities=25% Similarity=0.667 Sum_probs=13.7
Q ss_pred CCCCcCCHHhHHHHHH
Q psy17394 127 KPWTRLTPKDKAAIRK 142 (163)
Q Consensus 127 ~~~~rLtp~~~~~Ir~ 142 (163)
.||..||+.++..|+.
T Consensus 103 ~~W~~lt~~qrr~l~~ 118 (124)
T d2j0td1 103 APWNSLSLAQRRGFTK 118 (124)
T ss_dssp EEGGGSCHHHHHHHHH
T ss_pred EEhHHCCHHHHHhhhh
Confidence 6999999999988863
No 9
>d1rp3a1 a.4.13.1 (A:87-163) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=7.91 E-value=1.5e+02 Score=17.34 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcCCCChhHHHH
Q psy17394 44 QVIGARLIRRLSMRPTVEELED 65 (163)
Q Consensus 44 ~~~~d~L~rkL~~RP~~eELv~ 65 (163)
++....|..+|..-|+.+|+-+
T Consensus 13 ~~a~~~L~~~lGR~Pt~~EiA~ 34 (77)
T d1rp3a1 13 KEVVEKLKEKLGREPTDEEVAK 34 (77)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHH
T ss_pred HHHHHHHHHHHCcCCCHHHHHH
Confidence 4566789999999999999976
No 10
>d1ug3a2 a.118.1.14 (A:1438-1564) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.61 E-value=1.4e+02 Score=19.35 Aligned_cols=23 Identities=13% Similarity=0.166 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhcCCCChhHHHH
Q psy17394 43 KQVIGARLIRRLSMRPTVEELED 65 (163)
Q Consensus 43 r~~~~d~L~rkL~~RP~~eELv~ 65 (163)
.+++.+.|.+.|+..|++++++.
T Consensus 4 ~~~l~~~L~~~l~e~~~~~~i~~ 26 (127)
T d1ug3a2 4 SEELNRQLEKLLKEGSSNQRVFD 26 (127)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHH
Confidence 35677889999999999999875
Done!