RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17394
(163 letters)
>gnl|CDD|202377 pfam02755, RPEL, RPEL repeat. The RPEL repeat is named after
four conserved amino acids it contains. The function of
the RPEL repeat is unknown however it might be a DNA
binding repeat based on the observation that the
Drosophila myocardin-related transcription factor
contains a pfam02037 domain that is also implicated in
DNA binding.
Length = 26
Score = 34.6 bits (81), Expect = 0.001
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 49 RLIRRLSMRPTVEELEDRNILKKQT 73
L R+LS RPT EEL +RNILK+
Sbjct: 2 SLERKLSQRPTREELVERNILKEDE 26
Score = 33.8 bits (79), Expect = 0.002
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 10 DSLAIKLALRPDRQELIDRNILQVQS 35
DSL KL+ RP R+EL++RNIL+
Sbjct: 1 DSLERKLSQRPTREELVERNILKEDE 26
Score = 30.3 bits (70), Expect = 0.036
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 88 LLRKLSFRPTVDELKEKKIIRFND 111
L RKLS RPT +EL E+ I++ ++
Sbjct: 3 LERKLSQRPTREELVERNILKEDE 26
>gnl|CDD|128947 smart00707, RPEL, Repeat in Drosophila CG10860, human KIAA0680
and C. elegans F26H9.2.
Length = 26
Score = 32.4 bits (75), Expect = 0.006
Identities = 16/23 (69%), Positives = 18/23 (78%)
Query: 48 ARLIRRLSMRPTVEELEDRNILK 70
L R+LS RPT EELE+RNILK
Sbjct: 1 DVLNRKLSQRPTREELEERNILK 23
Score = 30.1 bits (69), Expect = 0.045
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 10 DSLAIKLALRPDRQELIDRNILQVQS 35
D L KL+ RP R+EL +RNIL+ S
Sbjct: 1 DVLNRKLSQRPTREELEERNILKELS 26
Score = 29.8 bits (68), Expect = 0.053
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 88 LLRKLSFRPTVDELKEKKIIRFND 111
L RKLS RPT +EL+E+ I++
Sbjct: 3 LNRKLSQRPTREELEERNILKELS 26
>gnl|CDD|220176 pfam09317, DUF1974, Domain of unknown function (DUF1974). Members
of this family of functionally uncharacterized domains
are predominantly found in various prokaryotic
acyl-coenzyme a dehydrogenases.
Length = 284
Score = 31.3 bits (72), Expect = 0.18
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 69 LKKQTAAE--EKKLKEEKKKMLLRKLSFRPTVDELKEKKII 107
+ AAE EKKLK+ KK L KL ++ E +I
Sbjct: 220 FQAVLAAEPLEKKLKKALKKGKLPKLRLEELLEAALEAGVI 260
>gnl|CDD|217206 pfam02731, SKIP_SNW, SKIP/SNW domain. This domain is found in
chromatin proteins.
Length = 158
Score = 29.2 bits (66), Expect = 0.56
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 61 EELEDRNILKKQTAAEEKKLKEEKKKML 88
EE+ R L++Q A +EK+ KEEK + L
Sbjct: 123 EEVRQRAELQRQLAEKEKQEKEEKLREL 150
>gnl|CDD|223749 COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell
envelope biogenesis, outer membrane].
Length = 436
Score = 29.2 bits (66), Expect = 1.1
Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 21/106 (19%)
Query: 48 ARLIRRLSMRPTVEELEDR------NILKKQTAAEEKKLKEEKKKMLLRKLSFRPTVDEL 101
ARLIR T E+ D + +K+ K L K+L+ L+++ VD+L
Sbjct: 288 ARLIR------TAREINDSMPRHVVDRVKEALNKAGKPLSG--SKILVLGLAYKGDVDDL 339
Query: 102 KEKKIIRFNDYIE--VTQAHDYDRRADKPWTRLTPKDKAAIRKELN 145
+E + + +E + YD P+ + P + L
Sbjct: 340 RESPALDIIELLEEWGGEVLVYD-----PYVKELPTREDGEGVTLA 380
>gnl|CDD|221418 pfam12094, DUF3570, Protein of unknown function (DUF3570). This
family of proteins is functionally uncharacterized. This
protein is found in bacteria. Proteins in this family
are typically between 396 to 444 amino acids in length.
Length = 407
Score = 28.9 bits (65), Expect = 1.4
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 105 KIIRFNDYIEVTQAHDYDRRADKPWTRL 132
K++ D Q + Y+ R P TR
Sbjct: 237 KVVSVVDSNGPAQLYLYENR---PDTRT 261
>gnl|CDD|225743 COG3202, COG3202, ATP/ADP translocase [Energy production and
conversion].
Length = 509
Score = 27.7 bits (62), Expect = 2.9
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 65 DRNILKKQTAAEEKKLKEEKKKMLLRKLSF 94
+RN+L K K++KKK KL
Sbjct: 245 NRNVLTDPLFYLRAKKKKKKKK---LKLGL 271
>gnl|CDD|219475 pfam07583, PSCyt2, Protein of unknown function (DUF1549). A
family of paralogues in the planctomyces.
Length = 200
Score = 27.5 bits (62), Expect = 3.1
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 26 IDRNILQVQSEKERQETKQVIGARLIRRLSMR-----PTVEELED 65
IDR +L E + + A L+RR+S+ PT EE+
Sbjct: 3 IDRFVLAKLEELGLTPSPEADDATLLRRVSLDLTGLPPTPEEVRA 47
>gnl|CDD|236528 PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed.
Length = 777
Score = 27.5 bits (62), Expect = 3.4
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 69 LKKQTAAE--EKKLKEEKKKMLLRKLSFRPTVDELKEKKII 107
L AAE EKK+ + KK L L DE +I
Sbjct: 691 LLDVIAAEPIEKKICKALKKGKLPFLRLDELADEALAAGVI 731
>gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional.
Length = 663
Score = 27.5 bits (61), Expect = 4.5
Identities = 23/95 (24%), Positives = 45/95 (47%)
Query: 63 LEDRNILKKQTAAEEKKLKEEKKKMLLRKLSFRPTVDELKEKKIIRFNDYIEVTQAHDYD 122
L D I K AEE K ++EKKK L+ + T+ EK++ D I +
Sbjct: 541 LSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEKQLSDLKDKISDADKDELK 600
Query: 123 RRADKPWTRLTPKDKAAIRKELNEFKSSEMEVHQE 157
++ K + L+ +D +I+ + + + + ++ Q+
Sbjct: 601 QKITKLRSTLSSEDVDSIKDKTKQLQEASWKISQQ 635
>gnl|CDD|215414 PLN02772, PLN02772, guanylate kinase.
Length = 398
Score = 26.7 bits (59), Expect = 6.4
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 12/61 (19%)
Query: 45 VIGARLIRRLSMR--------PTVEELEDRNILKKQTAAEE---KKLKEEKKKMLLRKLS 93
V GAR +R S+ P++EELE R + + T EE K+L+ + ++ K S
Sbjct: 235 VQGARSVRASSLEAIFIFICPPSMEELEKR-LRARGTETEEQIQKRLRNAEAELEQGKSS 293
Query: 94 F 94
Sbjct: 294 G 294
>gnl|CDD|236501 PRK09407, gabD2, succinic semialdehyde dehydrogenase; Reviewed.
Length = 524
Score = 26.8 bits (60), Expect = 7.1
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 115 VTQAHDYDRRADKPWTRLTPKDKAAI 140
V A R A + W +++AA+
Sbjct: 56 VEAAFARARAAQRAWAATPVRERAAV 81
>gnl|CDD|216381 pfam01237, Oxysterol_BP, Oxysterol-binding protein.
Length = 335
Score = 26.4 bits (59), Expect = 7.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 17 ALRPDRQELIDRNILQVQSEKERQETKQ 44
LRPD++ L + + + + EK R E KQ
Sbjct: 267 RLRPDQRALEEGDYDEAEEEKLRLEEKQ 294
>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family. This family of proteins includes
MND1 from S. cerevisiae. The mnd1 protein forms a
complex with hop2 to promote homologous chromosome
pairing and meiotic double-strand break repair.
Length = 188
Score = 26.0 bits (58), Expect = 8.1
Identities = 24/117 (20%), Positives = 50/117 (42%), Gaps = 22/117 (18%)
Query: 34 QSEKERQETKQVIGARLIRRLSMRPTVEELEDRNILKKQTAAEEKKLKEEKKKMLLRKLS 93
+ ++ E + I R EE E+R L ++ EK+LK+ K ++ + +
Sbjct: 80 ELKQRIAELQAQIEKLKKGR-------EETEERTELLEELKQLEKELKKLKAELEKYEKN 132
Query: 94 FRPTVDELKEKKII------RFNDYIEVTQAHDYDRRADKPWTRLTPKDKAAIRKEL 144
+++LKE+ + R+ D I +++ ++ D+A +RKE
Sbjct: 133 DPERIEKLKEETKVAKEAANRWTDNIFSLKSY---------LSKKFGLDEAQLRKEF 180
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.130 0.342
Gapped
Lambda K H
0.267 0.0849 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,337,288
Number of extensions: 803714
Number of successful extensions: 1731
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1633
Number of HSP's successfully gapped: 204
Length of query: 163
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 74
Effective length of database: 6,990,096
Effective search space: 517267104
Effective search space used: 517267104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 55 (24.7 bits)