RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17394
(163 letters)
>2yje_M MKL/myocardin-like protein 1; motor protein; HET: LAB ATP; 3.10A
{Mus musculus} PDB: 2yjf_M*
Length = 137
Score = 76.6 bits (188), Expect = 9e-19
Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 12/125 (9%)
Query: 2 LASKIARKDSLAIKLALRPDRQELIDRNILQVQS------EKERQETKQVIGARLIRRLS 55
S RK+ L +KL R R+EL+ + I+ E+ R + L R++
Sbjct: 2 PGSLSERKNVLQLKLQQRRTREELVSQGIMPPLKSPAAFHEQRRSLERARTEDYLKRKIR 61
Query: 56 MRPTVEELEDRNILKKQT------AAEEKKLKEEKKKMLLRKLSFRPTVDELKEKKIIRF 109
RP EL +IL++ + A + K + L K++ RP EL EK I+
Sbjct: 62 SRPERAELVRMHILEETSAEPSLQAKQLKLKRARLADDLNEKIAQRPGPMELVEKNILPV 121
Query: 110 NDYIE 114
++
Sbjct: 122 ESSLK 126
Score = 46.9 bits (111), Expect = 2e-07
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 5 KIARKDSLAIKLALRPDRQELIDRNILQVQS------EKERQETKQVIGARLIRRLSMRP 58
+ +D L K+ RP+R EL+ +IL+ S K+ + + + L +++ RP
Sbjct: 49 RARTEDYLKRKIRSRPERAELVRMHILEETSAEPSLQAKQLKLKRARLADDLNEKIAQRP 108
Query: 59 TVEELEDRNILKKQTAAEE 77
EL ++NIL +++ +E
Sbjct: 109 GPMELVEKNILPVESSLKE 127
Score = 32.7 bits (74), Expect = 0.021
Identities = 18/76 (23%), Positives = 26/76 (34%), Gaps = 6/76 (7%)
Query: 50 LIRRLSMRPTVEELEDRNILKKQTAA------EEKKLKEEKKKMLLRKLSFRPTVDELKE 103
L +L R T EEL + I+ + + + L RK+ RP EL
Sbjct: 12 LQLKLQQRRTREELVSQGIMPPLKSPAAFHEQRRSLERARTEDYLKRKIRSRPERAELVR 71
Query: 104 KKIIRFNDYIEVTQAH 119
I+ QA
Sbjct: 72 MHILEETSAEPSLQAK 87
>3tpm_B MAL; nuclear import, protein transport-transcription complex; 2.10A
{Mus musculus} PDB: 3tpq_M* 2v51_E*
Length = 120
Score = 63.9 bits (155), Expect = 4e-14
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 12/113 (10%)
Query: 8 RKDSLAIKLALRPDRQELIDRNILQVQS------EKERQETKQVIGARLIRRLSMRPTVE 61
RK+ L +KL R R+EL+ + I+ E+ R + L R++ RP
Sbjct: 4 RKNVLQLKLQQRRTREELVSQGIMPPLKSPAAFHEQRRSLERARTEDYLKRKIRSRPERA 63
Query: 62 ELEDRNILKKQT------AAEEKKLKEEKKKMLLRKLSFRPTVDELKEKKIIR 108
EL +IL++ + A + K + L K++ RP EL EK I+
Sbjct: 64 ELVRMHILEETSAEPSLQAKQLKLKRARLADDLNEKIAQRPGPMELVEKNILP 116
Score = 43.5 bits (102), Expect = 2e-06
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 5 KIARKDSLAIKLALRPDRQELIDRNILQVQS------EKERQETKQVIGARLIRRLSMRP 58
+ +D L K+ RP+R EL+ +IL+ S K+ + + + L +++ RP
Sbjct: 45 RARTEDYLKRKIRSRPERAELVRMHILEETSAEPSLQAKQLKLKRARLADDLNEKIAQRP 104
Query: 59 TVEELEDRNILKKQTA 74
EL ++NIL +++
Sbjct: 105 GPMELVEKNILPVESS 120
Score = 30.0 bits (67), Expect = 0.17
Identities = 18/76 (23%), Positives = 26/76 (34%), Gaps = 6/76 (7%)
Query: 50 LIRRLSMRPTVEELEDRNILKKQTAA------EEKKLKEEKKKMLLRKLSFRPTVDELKE 103
L +L R T EEL + I+ + + + L RK+ RP EL
Sbjct: 8 LQLKLQQRRTREELVSQGIMPPLKSPAAFHEQRRSLERARTEDYLKRKIRSRPERAELVR 67
Query: 104 KKIIRFNDYIEVTQAH 119
I+ QA
Sbjct: 68 MHILEETSAEPSLQAK 83
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.023
Identities = 18/123 (14%), Positives = 39/123 (31%), Gaps = 38/123 (30%)
Query: 1 QLASKIARKDSLAIK----LALRPDR------QELIDRNILQVQSEKERQ--------ET 42
+D L +A+ P R QE + + +V E
Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVEN 1850
Query: 43 KQ-VIGARLIRRLSMRPTVEELEDRNILKKQTAAEEKKLKEEKKKMLLRKLSFRPTVDEL 101
+Q V L ++ + N+L +K +K ++ +L +++E+
Sbjct: 1851 QQYVAAGDL-------RALDTVT--NVLNF--------IKLQKIDII--ELQKSLSLEEV 1891
Query: 102 KEK 104
+
Sbjct: 1892 EGH 1894
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 28.6 bits (64), Expect = 0.92
Identities = 27/149 (18%), Positives = 70/149 (46%), Gaps = 11/149 (7%)
Query: 22 RQELIDRNILQ--VQSEKERQETKQVIGARLI-RRLSMRPTVEELEDRNILKKQTAAEEK 78
Q ++N+LQ +Q+E E + + RL ++ + + E+E R ++ +
Sbjct: 888 TQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEAR---IEEEEERSQ 944
Query: 79 KLKEEKKKMLLRKLSFRPTVDELKEKKIIRFNDYIE----VTQAHDYDRRADKPWTRLTP 134
+L+ EKKKM + L ++E + + + + + + D + +LT
Sbjct: 945 QLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLT- 1003
Query: 135 KDKAAIRKELNEFKSSEMEVHQESRHLTR 163
K++ + + +++ ++ E +++++LT+
Sbjct: 1004 KERKLLEERVSDLTTNLAEEEEKAKNLTK 1032
>3r64_A NAD dependent benzaldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.57A {Corynebacterium glutamicum}
Length = 508
Score = 27.9 bits (63), Expect = 1.6
Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 114 EVTQAHDYDRRADKPWTRLTPKDKAAIRKELNEFKSSEMEVHQE 157
+V A++ ++A W +++AI E +E H+E
Sbjct: 51 DVDAAYEAAKKAQAEWAATPAAERSAIIYRAAEL----LEEHRE 90
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP,
aminoacyl-tRNA synthetase, ATP-binding,
charcot-marie-tooth disease, disease mutation; HET: B4P;
2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A*
2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Length = 693
Score = 26.6 bits (58), Expect = 4.4
Identities = 9/49 (18%), Positives = 22/49 (44%)
Query: 59 TVEELEDRNILKKQTAAEEKKLKEEKKKMLLRKLSFRPTVDELKEKKII 107
V +L++ + +LK K+ + ++L+ +P D + K+
Sbjct: 23 LVRKLKEDKAPQVDVDKAVAELKARKRVLEAKELALQPKDDIVDRAKME 71
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.1 bits (56), Expect = 4.8
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 12/33 (36%)
Query: 38 ERQETKQVIGARLIRR---------LSMRPTVE 61
E+Q K+ + A L + L+++ T+E
Sbjct: 18 EKQALKK-LQASL--KLYADDSAPALAIKATME 47
>2y53_A Aldehyde dehydrogenase (BOX pathway); oxidoreductase, NADP,
nucleotide-binding; HET: NAP; 1.40A {Burkholderia
xenovorans LB400} PDB: 2y52_A 2y51_A 2vro_A* 2y5d_A*
Length = 534
Score = 26.5 bits (59), Expect = 5.2
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 123 RRADKPWTRLTPKDKAAI 140
LT +AA
Sbjct: 54 EDGGAALRALTYAQRAAR 71
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; HET:
NAD; 1.82A {Pseudomonas aeruginosa}
Length = 490
Score = 26.4 bits (59), Expect = 5.2
Identities = 6/44 (13%), Positives = 14/44 (31%), Gaps = 4/44 (9%)
Query: 114 EVTQAHDYDRRADKPWTRLTPKDKAAIRKELNEFKSSEMEVHQE 157
+V A R A W R + + + + ++ +
Sbjct: 43 QVDAAVCAAREAFPAWARRPLEQRIELLERFAA----TLKSRAD 82
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 26.3 bits (57), Expect = 5.8
Identities = 15/59 (25%), Positives = 25/59 (42%)
Query: 69 LKKQTAAEEKKLKEEKKKMLLRKLSFRPTVDELKEKKIIRFNDYIEVTQAHDYDRRADK 127
K+Q A + LK K + K + V E K+K + R + + + DR +K
Sbjct: 480 KKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENK 538
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 26.2 bits (58), Expect = 6.3
Identities = 13/94 (13%), Positives = 34/94 (36%), Gaps = 7/94 (7%)
Query: 18 LRPDRQELIDRNILQVQSEKERQETKQVIGARLIRRLSMRPTVEELEDRNILKKQTAAEE 77
L+ ++L +++ + + + + L P ++ + E
Sbjct: 185 LKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGRFEVINNET 244
Query: 78 KKLKEEKKKMLLRKLSFRPTVDELKEKKIIRFND 111
++LK E+KK+ ++K+K+ F
Sbjct: 245 EQLKAEEKKI-------LNQFLKIKKKRKELFEK 271
>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics,
protein structure initiative, nysgrc, P biology; 2.50A
{Bacillus subtilis}
Length = 485
Score = 25.6 bits (57), Expect = 9.4
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 114 EVTQAHDYDRRADKPWTRLTPKDKAAI 140
++ A D ++A K W + T +D+ A+
Sbjct: 45 QLEDAFDIAQKAQKEWAKSTTEDRKAV 71
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.130 0.342
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,396,620
Number of extensions: 142158
Number of successful extensions: 661
Number of sequences better than 10.0: 1
Number of HSP's gapped: 632
Number of HSP's successfully gapped: 78
Length of query: 163
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 77
Effective length of database: 4,300,587
Effective search space: 331145199
Effective search space used: 331145199
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 53 (24.9 bits)