RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17394
(163 letters)
>d1eu1a2 c.81.1.1 (A:4-625) Dimethylsulfoxide reductase (DMSO
reductase) {Rhodobacter sphaeroides [TaxId: 1063]}
Length = 622
Score = 27.0 bits (58), Expect = 1.2
Identities = 15/84 (17%), Positives = 23/84 (27%), Gaps = 8/84 (9%)
Query: 71 KQTAAEEKKLKEEKKKMLLRKLSFRPTVDELKEKKIIRFNDYIEVTQAHDYDRRADKPWT 130
+ E K K P+ ++ + I+ F D R D +
Sbjct: 529 RDEMGWISSFYEAAVKQAEFKNVAMPSFEDFWSEGIVEFPITEGANFVRYADFREDPLFN 588
Query: 131 RL-TPKDKAAIRKELNEFKSSEME 153
L TP E S +E
Sbjct: 589 PLGTPSGLI-------EIYSKNIE 605
>d1euha_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Streptococcus mutans [TaxId: 1309]}
Length = 474
Score = 27.2 bits (59), Expect = 1.2
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 114 EVTQAHDYDRRADKPWTRLTPKDKAAI 140
EV + ++A W L+ ++AA
Sbjct: 40 EVDYVYASAKKAQPAWRALSYIERAAY 66
>d1m15a1 a.83.1.1 (A:2-95) Arginine kinase, N-domain {Horseshoe crab
(Limulus polyphemus) [TaxId: 6850]}
Length = 94
Score = 25.8 bits (57), Expect = 1.3
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 65 DRNILKKQTAAEEKKLKEEKKKMLLRKLSFRPTVDELKEKK 105
D+ L K A +K + K LL+K + D +K KK
Sbjct: 2 DQATLDKLEAGFKKLQEASDCKSLLKKHLTKDVFDSIKNKK 42
>d1zhxa1 d.338.1.1 (A:2-434) Oxysterol-binding protein homolog 4,
KES1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 433
Score = 26.5 bits (58), Expect = 1.8
Identities = 4/28 (14%), Positives = 7/28 (25%)
Query: 17 ALRPDRQELIDRNILQVQSEKERQETKQ 44
A + + + K E Q
Sbjct: 315 AWYDVAGAIKLGDFNLIAKTKTELEETQ 342
>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase,
GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}
Length = 136
Score = 24.7 bits (53), Expect = 4.0
Identities = 9/45 (20%), Positives = 20/45 (44%)
Query: 75 AEEKKLKEEKKKMLLRKLSFRPTVDELKEKKIIRFNDYIEVTQAH 119
A + + +K+ L LSF+ D+L+E ++ + +
Sbjct: 4 AFDLITSHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYE 48
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 25.1 bits (55), Expect = 4.3
Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 57 RPTVEELEDRNILKKQTAAEEKKLKEEKKKMLLRKLSFRPTVDELKEK 104
+ + + KKQ ++EKK +++ F +D +E+
Sbjct: 95 TKMFDYFQLQKEQKKQLTSQEKKQIRLEREKFEEDYKFC-ELDGRREQ 141
>d1t0tv_ d.58.4.10 (V:) YwfI homologue {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 243
Score = 24.8 bits (54), Expect = 5.3
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 119 HDYDRRADKP-WTRLTPKDKAAIRKELNEF 147
HD+ R D W L +++ A E
Sbjct: 10 HDF-RTIDWSAWKTLPNEEREAAISEFLAL 38
>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 323
Score = 25.1 bits (54), Expect = 5.4
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 60 VEELEDRNILKKQTAAEEKKLKEEKKKMLLRKLSFRPTVDEL 101
+E+L+ R ++ Q E+ K+ + PT D L
Sbjct: 5 IEDLKWRGLI-YQQTDEQGIEDLLNKEQVTLYCGADPTADSL 45
>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B
subunit, PccB {Thermotoga maritima [TaxId: 2336]}
Length = 251
Score = 24.7 bits (53), Expect = 6.0
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 54 LSMRPTVEELEDRNILKKQTAAEEKKLKEEKK-KMLLRK 91
+S+R +EEL+ +Q EK K+ + K+ +
Sbjct: 1 MSLRDKIEELKKIEKEIEQGGGPEKVEKQHRAGKLTAWE 39
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 24.3 bits (53), Expect = 8.7
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 63 LEDRNILKKQTAAEEKKLKEEKKKMLLRKLSFRPTVDELKEK 104
+ + +KQ + EEK +E+ + LL++ F +D KE+
Sbjct: 109 FKAQTEARKQMSKEEKLKIKEENEKLLKEYGFC-IMDNHKER 149
>d1vdha_ d.58.4.10 (A:) Polyketide synthase CurD homologue
TTHA1714/TTC1352 {Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 24.0 bits (52), Expect = 9.2
Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 119 HDYDRRADKP-WTRLTPKDKAAIRKELNEF 147
HD+ R D W + + +EL
Sbjct: 17 HDF-RLLDFARWFSAPLEAREDAWEELKGL 45
>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 156
Score = 23.8 bits (50), Expect = 9.5
Identities = 11/42 (26%), Positives = 14/42 (33%), Gaps = 3/42 (7%)
Query: 59 TVEELEDRNILKKQTAAEEKKLKEEKKKMLLRKLSFRPTVDE 100
+E R + E LK K +LL P VD
Sbjct: 5 EIEPYYQRYVS---IVWEGTPLKAALKALLLSNSMALPVVDS 43
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.130 0.342
Gapped
Lambda K H
0.267 0.0653 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 577,479
Number of extensions: 27654
Number of successful extensions: 196
Number of sequences better than 10.0: 1
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 36
Length of query: 163
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 84
Effective length of database: 1,322,926
Effective search space: 111125784
Effective search space used: 111125784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 49 (22.8 bits)