BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17399
         (152 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MN8|A Chain A, Structure Of Drosophila Melanogaster Carboxypeptidase D
           Isoform 1b Short
 pdb|3MN8|B Chain B, Structure Of Drosophila Melanogaster Carboxypeptidase D
           Isoform 1b Short
 pdb|3MN8|C Chain C, Structure Of Drosophila Melanogaster Carboxypeptidase D
           Isoform 1b Short
 pdb|3MN8|D Chain D, Structure Of Drosophila Melanogaster Carboxypeptidase D
           Isoform 1b Short
          Length = 435

 Score =  141 bits (356), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 63/133 (47%), Positives = 90/133 (67%), Gaps = 6/133 (4%)

Query: 1   MFKHLAQTYANGNPVMKTGTNCDDHFPNGITNGAYWYDVKGGMQDFNYVYSNCFEVTFEL 60
           +FK LA TY++ +P+M+ G NC+D F  GITNGA+WY++ GGMQDFNY +SNCFE+T EL
Sbjct: 247 VFKQLAHTYSDNHPIMRKGNNCNDSFSGGITNGAHWYELSGGMQDFNYAFSNCFELTIEL 306

Query: 61  SCCKFPRASQMPKFWKDNKEALLAFMEQTHLGVKGGMQD---FNYVYSNCFEVTFELSCC 117
           SCCK+P AS +P+ W+ NK +LL  + Q H+G+KG + D   F    +N +    E    
Sbjct: 307 SCCKYPAASTLPQEWQRNKASLLQLLRQAHIGIKGLVTDASGFPIADANVYVAGLE---E 363

Query: 118 KFPRASQMPKFWK 130
           K  R S+  ++W+
Sbjct: 364 KPMRTSKRGEYWR 376


>pdb|1UWY|A Chain A, Crystal Structure Of Human Carboxypeptidase M
          Length = 426

 Score =  130 bits (328), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 55/103 (53%), Positives = 79/103 (76%), Gaps = 2/103 (1%)

Query: 1   MFKHLAQTYANGNPVMKTGTNCDD--HFPNGITNGAYWYDVKGGMQDFNYVYSNCFEVTF 58
           +F++LA TYA+ NP MK G  C +  +FPNG+TNG  WY ++GGMQD+NY+++ CFE+T 
Sbjct: 204 VFQYLAHTYASRNPNMKKGDECKNKMNFPNGVTNGYSWYPLQGGMQDYNYIWAQCFEITL 263

Query: 59  ELSCCKFPRASQMPKFWKDNKEALLAFMEQTHLGVKGGMQDFN 101
           ELSCCK+PR  ++P FW +NK +L+ +++Q HLGVKG + D N
Sbjct: 264 ELSCCKYPREEKLPSFWNNNKASLIEYIKQVHLGVKGQVFDQN 306



 Score = 89.7 bits (221), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 50/59 (84%)

Query: 93  VKGGMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFWKDNKEALLAFMEQTHLGVKGRM 151
           ++GGMQD+NY+++ CFE+T ELSCCK+PR  ++P FW +NK +L+ +++Q HLGVKG++
Sbjct: 244 LQGGMQDYNYIWAQCFEITLELSCCKYPREEKLPSFWNNNKASLIEYIKQVHLGVKGQV 302


>pdb|2NSM|A Chain A, Crystal Structure Of The Human Carboxypeptidase N
           (kininase I) Catalytic Domain
          Length = 439

 Score =  120 bits (302), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 54/102 (52%), Positives = 73/102 (71%)

Query: 1   MFKHLAQTYANGNPVMKTGTNCDDHFPNGITNGAYWYDVKGGMQDFNYVYSNCFEVTFEL 60
           +F+ LA+ Y+  +  M  G NC D+FP+GITNGA WY +  GMQDFNY+++NCFE+T EL
Sbjct: 231 LFQKLAKVYSYAHGWMFQGWNCGDYFPDGITNGASWYSLSKGMQDFNYLHTNCFEITLEL 290

Query: 61  SCCKFPRASQMPKFWKDNKEALLAFMEQTHLGVKGGMQDFNY 102
           SC KFP   ++ + W  NKEAL+ F+EQ H G+KG + D NY
Sbjct: 291 SCDKFPPEEELQREWLGNKEALIQFLEQVHQGIKGMVLDQNY 332



 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 32/54 (59%), Positives = 42/54 (77%)

Query: 96  GMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFWKDNKEALLAFMEQTHLGVKG 149
           GMQDFNY+++NCFE+T ELSC KFP   ++ + W  NKEAL+ F+EQ H G+KG
Sbjct: 272 GMQDFNYLHTNCFEITLELSCDKFPPEEELQREWLGNKEALIQFLEQVHQGIKG 325


>pdb|1QMU|A Chain A, Duck Carboxypeptidase D Domain Ii
 pdb|1H8L|A Chain A, Duck Carboxypeptidase D Domain Ii In Complex With Gemsa
          Length = 380

 Score =  115 bits (289), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 51/104 (49%), Positives = 74/104 (71%), Gaps = 5/104 (4%)

Query: 1   MFKHLAQTYANGNPVMKTGTNCDD-----HFPNGITNGAYWYDVKGGMQDFNYVYSNCFE 55
           +F+ LA +Y+  N  M  G+ C D     +FP+GITNGA WY+V GGMQD+NY+ +NCFE
Sbjct: 206 VFQQLALSYSKENKKMYQGSPCKDLYPTEYFPHGITNGAQWYNVPGGMQDWNYLNTNCFE 265

Query: 56  VTFELSCCKFPRASQMPKFWKDNKEALLAFMEQTHLGVKGGMQD 99
           VT EL C K+P+A ++PK+W+ N+ +LL F++Q H G+ G + D
Sbjct: 266 VTIELGCVKYPKAEELPKYWEQNRRSLLQFIKQVHRGIWGFVLD 309


>pdb|3PRT|A Chain A, Mutant Of The Carboxypeptidase T
          Length = 323

 Score = 26.6 bits (57), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 7/68 (10%)

Query: 28  NGIT--NGAYWYDVKGGMQDFNYVYSNCFEVTFELSCCK-----FPRASQMPKFWKDNKE 80
           NG T   G+  Y   GGM D+ Y     F  TFE+         +P    + +    NKE
Sbjct: 244 NGYTPQQGSDLYIADGGMDDWAYGQHKIFAFTFEMYPTSYNPGFYPPDEVIGRETSRNKE 303

Query: 81  ALLAFMEQ 88
           A+L   E+
Sbjct: 304 AVLYVAEK 311


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.136    0.452 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,030,019
Number of Sequences: 62578
Number of extensions: 205169
Number of successful extensions: 395
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 379
Number of HSP's gapped (non-prelim): 16
length of query: 152
length of database: 14,973,337
effective HSP length: 90
effective length of query: 62
effective length of database: 9,341,317
effective search space: 579161654
effective search space used: 579161654
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)