Query psy17399
Match_columns 152
No_of_seqs 157 out of 462
Neff 5.3
Searched_HMMs 46136
Date Fri Aug 16 21:29:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17399.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17399hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03869 M14_CPX_like Peptidase 100.0 1.6E-58 3.4E-63 405.4 7.6 130 1-131 234-368 (405)
2 KOG2649|consensus 100.0 3.2E-58 6.9E-63 407.1 8.3 130 1-131 284-417 (500)
3 cd03864 M14_CPN Peptidase M14 100.0 5.2E-58 1.1E-62 400.6 8.4 130 1-131 226-355 (392)
4 cd03865 M14_CPE_H Peptidase M1 100.0 2E-56 4.3E-61 391.9 7.1 129 1-130 229-364 (402)
5 cd06245 M14_CPD_III The third 100.0 1.4E-50 3E-55 350.6 6.5 129 1-131 192-325 (363)
6 cd03863 M14_CPD_II The second 100.0 1.2E-49 2.6E-54 346.2 6.6 129 1-130 202-336 (375)
7 cd03866 M14_CPM Peptidase M14 100.0 3.2E-44 6.9E-49 312.0 7.0 131 1-131 203-336 (376)
8 cd03867 M14_CPZ Peptidase M14- 100.0 8.8E-39 1.9E-43 279.2 7.3 129 1-130 224-356 (395)
9 cd03868 M14_CPD_I The first ca 100.0 8E-38 1.7E-42 270.5 7.6 129 1-130 204-334 (372)
10 cd03858 M14_CP_N-E_like Carbox 100.0 3.2E-29 6.8E-34 216.4 7.0 130 1-131 204-337 (374)
11 KOG2649|consensus 99.8 3E-20 6.4E-25 165.7 4.6 60 93-152 326-385 (500)
12 cd03869 M14_CPX_like Peptidase 99.8 1.1E-19 2.4E-24 160.1 4.6 60 93-152 277-336 (405)
13 cd03864 M14_CPN Peptidase M14 99.8 3.1E-19 6.6E-24 156.6 3.7 60 93-152 264-323 (392)
14 cd03865 M14_CPE_H Peptidase M1 99.8 3.9E-19 8.4E-24 156.6 4.1 60 93-152 274-333 (402)
15 cd03863 M14_CPD_II The second 99.7 2.2E-17 4.8E-22 144.2 3.7 59 93-151 245-303 (375)
16 cd06245 M14_CPD_III The third 99.6 6E-17 1.3E-21 140.9 3.1 60 93-152 235-294 (363)
17 cd03866 M14_CPM Peptidase M14 99.5 2.1E-14 4.5E-19 125.5 4.0 60 93-152 243-302 (376)
18 cd03868 M14_CPD_I The first ca 99.3 1.8E-12 4E-17 112.5 4.5 60 93-152 244-303 (372)
19 cd03867 M14_CPZ Peptidase M14- 99.2 6.7E-12 1.5E-16 110.2 3.4 60 93-152 266-325 (395)
20 cd06226 M14_CPT_like Peptidase 99.2 1.5E-11 3.3E-16 104.4 4.7 70 2-84 221-291 (293)
21 cd03859 M14_CPT Peptidase M14- 99.0 9.1E-11 2E-15 99.0 2.0 68 2-82 223-295 (295)
22 PF00246 Peptidase_M14: Zinc c 98.9 2.4E-10 5.2E-15 94.4 -1.1 76 2-81 200-279 (279)
23 cd00596 Peptidase_M14_like The 98.5 8.8E-08 1.9E-12 75.0 4.2 71 2-82 126-196 (196)
24 cd03858 M14_CP_N-E_like Carbox 98.5 9.3E-08 2E-12 83.0 3.9 60 93-152 246-305 (374)
25 cd06248 M14_CPA_CPB_like Pepti 98.3 5.1E-07 1.1E-11 76.9 4.3 82 2-89 218-304 (304)
26 cd03860 M14_CP_A-B_like The Pe 98.3 7E-07 1.5E-11 75.3 4.5 81 2-88 208-293 (294)
27 cd03871 M14_CPB Peptidase M14 98.2 9.9E-07 2.1E-11 75.3 3.6 82 2-89 214-299 (300)
28 smart00631 Zn_pept Zn_pept. 98.0 6.3E-06 1.4E-10 68.8 4.1 54 1-64 208-262 (277)
29 cd03870 M14_CPA Peptidase M14 97.9 1.9E-05 4.2E-10 67.4 5.2 82 2-89 213-298 (301)
30 cd06246 M14_CPB2 Peptidase M14 97.8 2.7E-05 5.8E-10 66.5 3.9 82 2-89 214-299 (300)
31 cd06226 M14_CPT_like Peptidase 96.7 0.00085 1.8E-08 57.3 1.7 47 92-138 244-291 (293)
32 cd06247 M14_CPO Peptidase M14 96.6 0.0026 5.6E-08 54.5 4.1 65 24-89 230-298 (298)
33 cd06229 M14_Endopeptidase_I Pe 95.7 0.0052 1.1E-07 50.9 1.4 44 37-80 209-253 (255)
34 PF13620 CarboxypepD_reg: Carb 91.7 0.042 9E-07 36.8 -0.4 37 93-129 2-41 (82)
35 cd03859 M14_CPT Peptidase M14- 90.8 0.062 1.3E-06 45.5 -0.3 44 93-136 247-295 (295)
36 PF13715 DUF4480: Domain of un 90.8 0.11 2.4E-06 35.4 1.0 35 93-128 2-37 (88)
37 PF00246 Peptidase_M14: Zinc c 80.7 0.33 7.1E-06 40.0 -1.2 43 93-135 234-279 (279)
38 cd00596 Peptidase_M14_like The 71.0 2 4.2E-05 33.4 0.9 44 93-136 153-196 (196)
39 PF08870 DUF1832: Domain of un 62.7 1.5 3.2E-05 32.7 -1.2 81 4-105 29-109 (113)
40 PF00775 Dioxygenase_C: Dioxyg 62.7 5.1 0.00011 32.1 1.8 21 92-112 31-51 (183)
41 cd06237 M14_Nna1_like_3 A bact 62.3 2.9 6.3E-05 34.8 0.4 26 36-61 199-224 (244)
42 cd06229 M14_Endopeptidase_I Pe 61.9 3.4 7.3E-05 34.2 0.7 81 50-134 159-253 (255)
43 cd06227 Peptidase_M14-like_2 A 61.7 5.5 0.00012 33.7 2.0 37 25-61 220-257 (272)
44 COG3485 PcaH Protocatechuate 3 60.0 5.7 0.00012 33.1 1.7 24 89-112 71-94 (226)
45 PF08400 phage_tail_N: Prophag 58.8 6.8 0.00015 30.3 1.8 24 93-116 5-28 (134)
46 TIGR02423 protocat_alph protoc 57.8 6.5 0.00014 31.9 1.6 20 93-112 42-61 (193)
47 cd03872 M14_CPA6 Carboxypeptid 57.2 10 0.00022 32.6 2.9 55 35-89 238-296 (300)
48 cd03459 3,4-PCD Protocatechuat 57.1 7.1 0.00015 30.6 1.7 21 92-112 17-37 (158)
49 cd00421 intradiol_dioxygenase 57.1 7.5 0.00016 29.6 1.8 22 92-113 13-34 (146)
50 TIGR02465 chlorocat_1_2 chloro 54.7 8 0.00017 32.6 1.7 21 92-112 100-120 (246)
51 cd03464 3,4-PCD_beta Protocate 53.8 8.3 0.00018 32.0 1.7 20 93-112 68-87 (220)
52 TIGR02422 protocat_beta protoc 53.5 8.5 0.00018 31.9 1.7 21 92-112 62-82 (220)
53 cd03463 3,4-PCD_alpha Protocat 53.2 8.6 0.00019 30.9 1.7 20 93-112 39-58 (185)
54 PF07210 DUF1416: Protein of u 50.6 12 0.00025 27.0 1.8 35 93-128 10-47 (85)
55 cd06905 Peptidase_M14-like_8 A 49.9 9.1 0.0002 33.8 1.4 24 38-61 314-337 (360)
56 cd03862 Peptidase_M14-like_7 A 48.2 10 0.00022 32.2 1.4 30 33-62 204-240 (273)
57 cd03458 Catechol_intradiol_dio 48.2 12 0.00025 31.8 1.7 20 93-112 107-126 (256)
58 cd03462 1,2-CCD chlorocatechol 47.5 12 0.00026 31.6 1.7 21 92-112 101-121 (247)
59 TIGR02439 catechol_proteo cate 46.3 13 0.00028 32.1 1.7 20 93-112 131-150 (285)
60 cd03460 1,2-CTD Catechol 1,2 d 44.7 14 0.00031 31.7 1.8 20 93-112 127-146 (282)
61 TIGR02438 catachol_actin catec 44.6 14 0.0003 31.8 1.7 21 92-112 134-154 (281)
62 cd03461 1,2-HQD Hydroxyquinol 42.5 16 0.00034 31.4 1.7 20 93-112 123-142 (277)
63 PRK10602 murein peptide amidas 42.4 10 0.00023 31.5 0.6 40 35-77 187-226 (237)
64 PF14302 DUF4377: Domain of un 40.4 48 0.001 22.9 3.6 39 33-71 29-67 (80)
65 COG5266 CbiK ABC-type Co2+ tra 38.3 30 0.00066 29.6 2.7 20 93-113 174-193 (264)
66 cd03860 M14_CP_A-B_like The Pe 36.5 33 0.00072 28.8 2.7 50 93-142 239-293 (294)
67 cd06228 Peptidase_M14-like_3 A 35.0 20 0.00043 31.5 1.2 29 34-62 269-304 (332)
68 PF13220 DUF4028: Protein of u 34.5 11 0.00024 25.2 -0.3 19 65-83 41-59 (65)
69 smart00634 BID_1 Bacterial Ig- 31.4 38 0.00083 23.3 2.0 25 93-117 22-46 (92)
70 cd03871 M14_CPB Peptidase M14 29.2 36 0.00078 29.2 1.8 51 93-143 245-299 (300)
71 cd06389 PBP1_iGluR_AMPA_GluR2 26.1 86 0.0019 26.9 3.6 31 75-106 311-343 (370)
72 cd06248 M14_CPA_CPB_like Pepti 26.0 62 0.0014 27.6 2.7 50 93-142 249-303 (304)
73 PF05410 Peptidase_C31: Porcin 24.1 37 0.00081 24.8 0.8 33 32-69 68-100 (105)
74 PF05688 DUF824: Salmonella re 22.1 70 0.0015 20.4 1.7 21 96-116 20-40 (47)
75 COG4405 Uncharacterized protei 21.5 1.3E+02 0.0029 23.5 3.5 53 92-145 60-112 (140)
76 PRK15036 hydroxyisourate hydro 21.5 67 0.0015 24.6 1.9 26 91-116 27-53 (137)
77 cd06246 M14_CPB2 Peptidase M14 21.1 69 0.0015 27.3 2.1 51 93-143 245-299 (300)
78 PF14168 YjzC: YjzC-like prote 20.7 66 0.0014 21.4 1.5 25 106-131 31-55 (57)
79 cd06904 M14_MpaA_like Peptidas 20.7 46 0.001 25.9 0.8 39 37-79 137-175 (178)
No 1
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Proteins belonging to this subgroup include CP-like protein X1 (CPX1), CP-like protein X2 (CPX2), and aortic CP-like protein (ACLP) and its isoform adipocyte enhancer binding protein-1 (AEBP1). AEBP1 is a truncated form of ACLP, which may arise from alternative splicing of the gene. These proteins are inactive towards standard CP substrates because they lack one or more critical active site and substrate-binding residues that are necessary for activity. They may function as binding proteins rather than as active CPs or display catalytic activity toward other substrates. Pro
Probab=100.00 E-value=1.6e-58 Score=405.38 Aligned_cols=130 Identities=37% Similarity=0.677 Sum_probs=122.3
Q ss_pred ChHHHHHHHHhcCcCCCCCC--CC-CC--CCCCCccccceeeecCCCcccceeeecceeEEEEeeccCCCCCCCCchHHH
Q psy17399 1 MFKHLAQTYANGNPVMKTGT--NC-DD--HFPNGITNGAYWYDVKGGMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFW 75 (152)
Q Consensus 1 ~F~~LA~~Ya~~h~~M~~~~--~C-~~--~F~~GItNGA~WY~~~GgmqD~nY~~~nc~eiTlElsc~K~P~~~~L~~~W 75 (152)
+||+||++||.+||+|+++. +| ++ .|++||||||+||+|+||||||||+|+|||||||||||||||++++|+++|
T Consensus 234 ~Fr~LA~~Ya~~h~~M~~~~~~~c~~~~~~~~~GitNGa~Wy~~~GgmqD~nY~~~ncfEiTlElsc~K~P~~~~L~~~W 313 (405)
T cd03869 234 VFRWLATSYASTHLLMTDASRRVCHTEDFQKEDGIINGASWHTVAGSMNDFSYLHTNCFELSVYLGCDKFPHESELPEEW 313 (405)
T ss_pred HHHHHHHHHHHhCHHhhcCCCCCCCCcccccCCCceeCCeeccCCCcccchhhhccCeEEEEEeccCCCCCChHHHHHHH
Confidence 69999999999999999853 69 33 469999999999999999999999999999999999999999999999999
Q ss_pred HhcHHHHHHHHHHhccCccceEEccCCCceeeEEEEEEcccCCCCCCCCChHHHHh
Q psy17399 76 KDNKEALLAFMEQTHLGVKGGMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFWKD 131 (152)
Q Consensus 76 ~~N~~all~~~~~vh~GIkG~V~D~~g~pI~~A~ItVe~~~~kfP~ts~lg~yWr~ 131 (152)
++||+|||+||+|||+||||+|+|.+|.||++|.|+|++..+. .+|.+.|||||-
T Consensus 314 ~~N~~all~~~~~vh~GikG~V~d~~g~~i~~a~i~v~g~~~~-v~t~~~GdywRl 368 (405)
T cd03869 314 ENNKESLLVFMEQVHRGIKGVVRDKTGKGIPNAIISVEGINHD-IRTASDGDYWRL 368 (405)
T ss_pred HHHHHHHHHHHHHHhcCceEEEECCCCCcCCCcEEEEecCccc-eeeCCCCceEEe
Confidence 9999999999999999999999999999999999999999855 488899999994
No 2
>KOG2649|consensus
Probab=100.00 E-value=3.2e-58 Score=407.12 Aligned_cols=130 Identities=39% Similarity=0.729 Sum_probs=122.1
Q ss_pred ChHHHHHHHHhcCcCCCCCCCC---C-CCCCCCccccceeeecCCCcccceeeecceeEEEEeeccCCCCCCCCchHHHH
Q psy17399 1 MFKHLAQTYANGNPVMKTGTNC---D-DHFPNGITNGAYWYDVKGGMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFWK 76 (152)
Q Consensus 1 ~F~~LA~~Ya~~h~~M~~~~~C---~-~~F~~GItNGA~WY~~~GgmqD~nY~~~nc~eiTlElsc~K~P~~~~L~~~W~ 76 (152)
+||+||++||++|++|+++.+| . +.+.+||||||+||+|+||||||||||||||||||||||+|||++++||++|+
T Consensus 284 ~F~~La~~YA~~h~~M~~~~~~~~~~~~~~~~GItNGA~Wy~v~GgMqDfnYLhTNCfEiTiElgC~KfP~e~eLp~~WE 363 (500)
T KOG2649|consen 284 TFRFLARIYAKSHRNMSLGKRCECDGNNGSVGGITNGASWYPVYGGMQDWNYLHTNCFEITLELSCEKFPKESELPTLWE 363 (500)
T ss_pred HHHHHHHHHHhhChhhhcCCCCcccccCCCcCceecCcceeecCCcccchhhhhcCeEEEEEEeccccCCchhhhHHHHH
Confidence 5999999999999999998887 1 12248999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHhccCccceEEccCCCceeeEEEEEEcccCCCCCCCCChHHHHh
Q psy17399 77 DNKEALLAFMEQTHLGVKGGMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFWKD 131 (152)
Q Consensus 77 ~N~~all~~~~~vh~GIkG~V~D~~g~pI~~A~ItVe~~~~kfP~ts~lg~yWr~ 131 (152)
+||+|||+||||||+||||+|+|.+|+||++|.|+|++..+.. +|...|||||-
T Consensus 364 ~Nr~sLl~f~eqvH~GIkG~V~D~~G~~I~NA~IsV~ginHdv-~T~~~GDYWRL 417 (500)
T KOG2649|consen 364 YNRKSLLNFVEQVHRGIKGLVFDDTGNPIANATISVDGINHDV-TTAKEGDYWRL 417 (500)
T ss_pred hhHHHHHHHHHHHHhccceeEEcCCCCccCceEEEEecCcCce-eecCCCceEEe
Confidence 9999999999999999999999999999999999999998664 88999999984
No 3
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=100.00 E-value=5.2e-58 Score=400.60 Aligned_cols=130 Identities=39% Similarity=0.721 Sum_probs=124.9
Q ss_pred ChHHHHHHHHhcCcCCCCCCCCCCCCCCCccccceeeecCCCcccceeeecceeEEEEeeccCCCCCCCCchHHHHhcHH
Q psy17399 1 MFKHLAQTYANGNPVMKTGTNCDDHFPNGITNGAYWYDVKGGMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFWKDNKE 80 (152)
Q Consensus 1 ~F~~LA~~Ya~~h~~M~~~~~C~~~F~~GItNGA~WY~~~GgmqD~nY~~~nc~eiTlElsc~K~P~~~~L~~~W~~N~~ 80 (152)
+||+||++||.+||+|+++.+|++.|++||||||+||||+||||||||+|+|||||||||||||||++++|+++|++||+
T Consensus 226 ~f~~la~~ya~~h~~m~~~~~c~~~f~~gitnGa~wy~~~GgmqD~~Y~~~nc~e~t~el~c~k~p~~~~l~~~w~~n~~ 305 (392)
T cd03864 226 LFQKLAKTYSYAHGWMHKGWNCGDYFDEGITNGASWYSLSKGMQDFNYLHTNCFEITLELSCDKFPPEEELEREWLGNRE 305 (392)
T ss_pred HHHHHHHHHHHhCCcccCCCCCcccCCCCcccCceeEecCCCchhhhhhccCeeEEEEeccccCCCCHHHHHHHHHHHHH
Confidence 69999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCccceEEccCCCceeeEEEEEEcccCCCCCCCCChHHHHh
Q psy17399 81 ALLAFMEQTHLGVKGGMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFWKD 131 (152)
Q Consensus 81 all~~~~~vh~GIkG~V~D~~g~pI~~A~ItVe~~~~kfP~ts~lg~yWr~ 131 (152)
|||+||+|||+||+|+|+|.+|.|++.|.|+|++.... ..++..|+|||.
T Consensus 306 all~~~~~~~~gI~G~V~D~~g~pi~~A~V~v~g~~~~-~~T~~~G~y~r~ 355 (392)
T cd03864 306 ALISYIEQVHQGIKGMVTDENNNGIANAVISVSGISHD-VTSGTLGDYFRL 355 (392)
T ss_pred HHHHHHHHhcCeEEEEEECCCCCccCCeEEEEECCccc-eEECCCCcEEec
Confidence 99999999999999999999999999999999998754 477889999986
No 4
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3.4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
Probab=100.00 E-value=2e-56 Score=391.86 Aligned_cols=129 Identities=42% Similarity=0.791 Sum_probs=121.4
Q ss_pred ChHHHHHHHHhcCcCCCCC--CCC-----CCCCCCCccccceeeecCCCcccceeeecceeEEEEeeccCCCCCCCCchH
Q psy17399 1 MFKHLAQTYANGNPVMKTG--TNC-----DDHFPNGITNGAYWYDVKGGMQDFNYVYSNCFEVTFELSCCKFPRASQMPK 73 (152)
Q Consensus 1 ~F~~LA~~Ya~~h~~M~~~--~~C-----~~~F~~GItNGA~WY~~~GgmqD~nY~~~nc~eiTlElsc~K~P~~~~L~~ 73 (152)
+||+||++||.+||+|+++ .+| ++.|++||||||+||+|.||||||||+++|||||||||||||||++++|++
T Consensus 229 ~f~~lA~~Ya~~h~~m~~~~~~~c~~~~~~~~f~~GitNGa~Wy~~~GgmqD~ny~~~nc~eiT~El~c~K~P~~~~L~~ 308 (402)
T cd03865 229 IFKSLARAYSSLNPAMSDPNRPPCRKNDDDSSFVDGTTNGGAWYSVPGGMQDFNYLSSNCFEITVELSCDKFPPEETLKQ 308 (402)
T ss_pred HHHHHHHHHHhhCHHhhcCCCCCCCCCCccccCCCCeecCceecccCCcccchhhhccCceEEEEEecCCCCCCHHHHHH
Confidence 6999999999999999973 469 246999999999999999999999999999999999999999999999999
Q ss_pred HHHhcHHHHHHHHHHhccCccceEEccCCCceeeEEEEEEcccCCCCCCCCChHHHH
Q psy17399 74 FWKDNKEALLAFMEQTHLGVKGGMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFWK 130 (152)
Q Consensus 74 ~W~~N~~all~~~~~vh~GIkG~V~D~~g~pI~~A~ItVe~~~~kfP~ts~lg~yWr 130 (152)
+|++||+|||+||+|||+||+|+|+|.+|.||+.|.|+|++.... ..++..|+|||
T Consensus 309 ~W~~n~~all~~~~q~~~gI~G~V~D~~g~pI~~AtV~V~g~~~~-~~T~~~G~Y~~ 364 (402)
T cd03865 309 YWEDNKNSLVNYIEQVHRGVKGFVKDLQGNPIANATISVEGIDHD-ITSAKDGDYWR 364 (402)
T ss_pred HHHHHHHHHHHHHHHhccceEEEEECCCCCcCCCeEEEEEcCccc-cEECCCeeEEE
Confidence 999999999999999999999999999999999999999988644 47888999998
No 5
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=100.00 E-value=1.4e-50 Score=350.58 Aligned_cols=129 Identities=34% Similarity=0.634 Sum_probs=120.7
Q ss_pred ChHHHHHHHHhcCcCCCCCCC-C----CCCCCCCccccceeeecCCCcccceeeecceeEEEEeeccCCCCCCCCchHHH
Q psy17399 1 MFKHLAQTYANGNPVMKTGTN-C----DDHFPNGITNGAYWYDVKGGMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFW 75 (152)
Q Consensus 1 ~F~~LA~~Ya~~h~~M~~~~~-C----~~~F~~GItNGA~WY~~~GgmqD~nY~~~nc~eiTlElsc~K~P~~~~L~~~W 75 (152)
+|++||++||.+||+|+.+.+ | ++.|++||||||.||+|.||||||||+++|||||||||||||||++++|+++|
T Consensus 192 ~~~~la~~~a~ah~~m~~~~~~c~~~~~~~~~~Gitnga~wy~~~g~mqd~~y~~~~~~e~t~e~~~~k~P~~~~l~~~w 271 (363)
T cd06245 192 TLKHLAKVYANNHPTMHLGQPGCPNNSDENIPGGVMRGAEWNSHLGSMKDFSVDFGHCPEITVYTSCCLFPSASQLPDLW 271 (363)
T ss_pred HHHHHHHHHHHhChhhhcCCCCCCCCcccccCCCccccceeecccCCcchhhhhhcCCceeEEEeccccCCCHHHHHHHH
Confidence 489999999999999998654 8 35799999999999999999999999999999999999999999999999999
Q ss_pred HhcHHHHHHHHHHhccCccceEEccCCCceeeEEEEEEcccCCCCCCCCChHHHHh
Q psy17399 76 KDNKEALLAFMEQTHLGVKGGMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFWKD 131 (152)
Q Consensus 76 ~~N~~all~~~~~vh~GIkG~V~D~~g~pI~~A~ItVe~~~~kfP~ts~lg~yWr~ 131 (152)
++||+|||+||+|||+||+|.|+|.+|.||+.|.|.|++.. . ..|+..|+||+.
T Consensus 272 ~~n~~all~~~~~~~~gI~G~V~d~~g~pi~~A~V~v~g~~-~-~~T~~~G~y~~~ 325 (363)
T cd06245 272 AENKKSLLSMIVEAHKGVHGVVTDKAGKPISGATIVLNGGH-R-VYTKEGGYFHVL 325 (363)
T ss_pred HHHHHHHHHHHHHcCcEEEEEEEcCCCCCccceEEEEeCCC-c-eEeCCCcEEEEe
Confidence 99999999999999999999999999999999999999963 3 377889999984
No 6
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=100.00 E-value=1.2e-49 Score=346.17 Aligned_cols=129 Identities=40% Similarity=0.804 Sum_probs=121.6
Q ss_pred ChHHHHHHHHhcCcCCCCCCCCC-----CCCCCCccccceeeecCCCcccceeeecceeEEEEeeccCCCCCCCCchHHH
Q psy17399 1 MFKHLAQTYANGNPVMKTGTNCD-----DHFPNGITNGAYWYDVKGGMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFW 75 (152)
Q Consensus 1 ~F~~LA~~Ya~~h~~M~~~~~C~-----~~F~~GItNGA~WY~~~GgmqD~nY~~~nc~eiTlElsc~K~P~~~~L~~~W 75 (152)
+|++||++||.+|++|+.+.+|. +.|++||||||.||+++||||||||+++||||+||||||||||++++|+++|
T Consensus 202 ~~~~la~~~a~a~~~m~~~~~c~~~~~~~~~~~Gi~nga~wY~~~GgmqDw~y~~~~~~e~T~El~~~k~p~~~~l~~~w 281 (375)
T cd03863 202 VFQQLALSYSKENKKMYQGSPCKDLYPTEYFPHGITNGAQWYNVPGGMQDWNYLNTNCFEVTIELGCVKYPKEEELPKYW 281 (375)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCccccccccCCCCccCCceEEecCCChhhhhhhhcCeEEEEEecCcccCCCHHHHHHHH
Confidence 49999999999999999988994 2489999999999999999999999999999999999999999999999999
Q ss_pred HhcHHHHHHHHHHhccCccceEEcc-CCCceeeEEEEEEcccCCCCCCCCChHHHH
Q psy17399 76 KDNKEALLAFMEQTHLGVKGGMQDF-NYVYSNCFEVTFELSCCKFPRASQMPKFWK 130 (152)
Q Consensus 76 ~~N~~all~~~~~vh~GIkG~V~D~-~g~pI~~A~ItVe~~~~kfP~ts~lg~yWr 130 (152)
++||+|||+||+|||+||+|+|+|. +|.||+.|+|.|++.. +-..|+..|+|||
T Consensus 282 ~~n~~all~~~~~~~~gI~G~V~D~~~g~pl~~AtV~V~g~~-~~~~Td~~G~f~~ 336 (375)
T cd03863 282 EQNRRSLLQFMKQVHRGVRGFVLDATDGRGILNATISVADIN-HPVTTYKDGDYWR 336 (375)
T ss_pred HHHHHHHHHHHHHhcCeEEEEEEeCCCCCCCCCeEEEEecCc-CceEECCCccEEE
Confidence 9999999999999999999999995 7999999999999876 4458888999998
No 7
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=100.00 E-value=3.2e-44 Score=312.01 Aligned_cols=131 Identities=44% Similarity=0.811 Sum_probs=121.8
Q ss_pred ChHHHHHHHHhcCcCCCCCCCCC--CCCCCCccccceeeecCCCcccceeeecceeEEEEeeccCCCCCCCCchHHHHhc
Q psy17399 1 MFKHLAQTYANGNPVMKTGTNCD--DHFPNGITNGAYWYDVKGGMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFWKDN 78 (152)
Q Consensus 1 ~F~~LA~~Ya~~h~~M~~~~~C~--~~F~~GItNGA~WY~~~GgmqD~nY~~~nc~eiTlElsc~K~P~~~~L~~~W~~N 78 (152)
+|++||++||.+|+.|+.|.+|. ..|..||||||.||+++||||||+|++++|||+||||+|||||++++|+.+|++|
T Consensus 203 ~~~~la~~~a~~~~~~~~g~~~~~~~~~~~Gi~nga~~Y~~sG~~~Dw~y~~~~~~~~T~El~~~k~p~~~~l~~~w~~n 282 (376)
T cd03866 203 VFVHLAKTYSYNHANMYKGNHCSDKQSFPSGITNGYQWYPLQGGMQDYNYVWAQCFEITLELSCCKYPPEEQLPAFWEDN 282 (376)
T ss_pred HHHHHHHHHHHhCHHhhCCCCCCccccCCCCcccceEEEEcCCCchhhhhhhCceEEEEEEecCCCCCCHHHHHHHHHHh
Confidence 48999999999999999888893 6899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCccceEEccCCCceeeEEEEEEcccCCC-CCCCCChHHHHh
Q psy17399 79 KEALLAFMEQTHLGVKGGMQDFNYVYSNCFEVTFELSCCKF-PRASQMPKFWKD 131 (152)
Q Consensus 79 ~~all~~~~~vh~GIkG~V~D~~g~pI~~A~ItVe~~~~kf-P~ts~lg~yWr~ 131 (152)
|+|||+||+|+|.||+|.|+|.+|.||++|.|+|++..... -.++..|+||+.
T Consensus 283 ~~~ll~~i~q~~~gI~G~V~D~~g~pi~~A~V~v~g~~~~~~~~T~~~G~y~~~ 336 (376)
T cd03866 283 KAALIEYIKQVHLGVKGQVFDSNGNPIPNAIVEVKGRKHICPYRTNVNGEYFLL 336 (376)
T ss_pred HHHHHHHHHHhcCceEEEEECCCCCccCCeEEEEEcCCceeEEEECCCceEEEe
Confidence 99999999999999999999999999999999999865321 267889999984
No 8
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPZ is a secreted Zn-dependent enzyme whose biological function is largely unknown. Unlike other members of the N/E subfamily, CPZ has a bipartite structure, which consists of an N-terminal cysteine-rich domain (CRD) whose sequence is similar to Wnt-binding proteins, and a C-terminal CP catalytic domain that removes C-terminal Arg residues from substrates. CPZ is enriched in the extracellular matrix and is widely distributed during early embryogenesis. That the CRD of CPZ can bind to Wnt4 suggests that CPZ plays a role in Wnt signaling.
Probab=100.00 E-value=8.8e-39 Score=279.21 Aligned_cols=129 Identities=41% Similarity=0.747 Sum_probs=119.3
Q ss_pred ChHHHHHHHHhcCcCCCCCC--CCC--CCCCCCccccceeeecCCCcccceeeecceeEEEEeeccCCCCCCCCchHHHH
Q psy17399 1 MFKHLAQTYANGNPVMKTGT--NCD--DHFPNGITNGAYWYDVKGGMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFWK 76 (152)
Q Consensus 1 ~F~~LA~~Ya~~h~~M~~~~--~C~--~~F~~GItNGA~WY~~~GgmqD~nY~~~nc~eiTlElsc~K~P~~~~L~~~W~ 76 (152)
+|++||++||.+|+.|+.+. +|+ ..|.+||+|||.||+++||||||+|++++|||+|+||+|+||||+++|+.+|+
T Consensus 224 ~~~~lA~~~a~a~~~~~~~~~~~~~~~~~~~g~i~~ga~~Y~~sG~~~Dw~y~~~~~~~~T~EL~~~~~pp~~~i~~~~~ 303 (395)
T cd03867 224 VFKMLARTYADAHPTMSDRSTRRCGGNFHKRGGIINGAEWYSFSGGMSDFNYLHTNCFEVTVELGCDKFPPEEELYTIWQ 303 (395)
T ss_pred HHHHHHHHHHHhCccccCCCCCCCccccccCCCceecceeeEcCCCcchhhhhccCceEEEEEecCCCCCCHHHHHHHHH
Confidence 48999999999999999753 483 34699999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHhccCccceEEccCCCceeeEEEEEEcccCCCCCCCCChHHHH
Q psy17399 77 DNKEALLAFMEQTHLGVKGGMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFWK 130 (152)
Q Consensus 77 ~N~~all~~~~~vh~GIkG~V~D~~g~pI~~A~ItVe~~~~kfP~ts~lg~yWr 130 (152)
+|++||++||++||+||+|.|+|.+|.||+.|.|+|++.... ..++..|+||+
T Consensus 304 e~~~~l~~~~~~~~~~i~G~V~D~~g~pi~~A~V~v~g~~~~-~~Td~~G~y~~ 356 (395)
T cd03867 304 ENKEALLSFMEMVHRGIKGFVKDKDGNPIKGARISVRGIRHD-ITTAEDGDYWR 356 (395)
T ss_pred HHHHHHHHHHHhccceeEEEEEcCCCCccCCeEEEEeccccc-eEECCCceEEE
Confidence 999999999999999999999999999999999999987544 47788999985
No 9
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=100.00 E-value=8e-38 Score=270.55 Aligned_cols=129 Identities=48% Similarity=0.912 Sum_probs=121.1
Q ss_pred ChHHHHHHHHhcCcCCCCCCC-C-CCCCCCCccccceeeecCCCcccceeeecceeEEEEeeccCCCCCCCCchHHHHhc
Q psy17399 1 MFKHLAQTYANGNPVMKTGTN-C-DDHFPNGITNGAYWYDVKGGMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFWKDN 78 (152)
Q Consensus 1 ~F~~LA~~Ya~~h~~M~~~~~-C-~~~F~~GItNGA~WY~~~GgmqD~nY~~~nc~eiTlElsc~K~P~~~~L~~~W~~N 78 (152)
+|++||++||.+|+.|+.+.+ | +..|..||+|||.||+++||||||+|.+++|+++|+||+|+|||++++|+.+|++|
T Consensus 204 ~~~~la~~~a~~~~~~~~~~~~~~~~~~~~G~~~~~~~Y~~~G~~~Dw~y~~~~~~~~T~El~~~~~p~~~~l~~~w~~n 283 (372)
T cd03868 204 VFKYLALTYANNHPTMRTGKPCCEGETFKDGITNGAHWYDVPGGMQDYNYLHSNCFEITLELSCCKYPPASELPEEWNNN 283 (372)
T ss_pred HHHHHHHHHHhhCHHhhCCCCCCccccCCCCcccCceeeeCCCCcchhhhhccCeeEEEEEecCCCCCCHHHHHHHHHHh
Confidence 489999999999999988765 4 78899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCccceEEccCCCceeeEEEEEEcccCCCCCCCCChHHHH
Q psy17399 79 KEALLAFMEQTHLGVKGGMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFWK 130 (152)
Q Consensus 79 ~~all~~~~~vh~GIkG~V~D~~g~pI~~A~ItVe~~~~kfP~ts~lg~yWr 130 (152)
|+||+.||+++|.||+|.|+|.+|.|++.|.|+|.+.... -.++..|.||+
T Consensus 284 ~~al~~~~~~~~~~i~G~V~d~~g~pv~~A~V~v~~~~~~-~~td~~G~y~~ 334 (372)
T cd03868 284 RESLLAYLEQVHIGVKGFVRDASGNPIEDATIMVAGIDHN-VTTAKFGDYWR 334 (372)
T ss_pred HHHHHHHHHHhCCceEEEEEcCCCCcCCCcEEEEEecccc-eEeCCCceEEe
Confidence 9999999999999999999999999999999999987644 47788999984
No 10
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
Probab=99.95 E-value=3.2e-29 Score=216.37 Aligned_cols=130 Identities=48% Similarity=0.927 Sum_probs=119.0
Q ss_pred ChHHHHHHHHhcCcCCCCCCCC----CCCCCCCccccceeeecCCCcccceeeecceeEEEEeeccCCCCCCCCchHHHH
Q psy17399 1 MFKHLAQTYANGNPVMKTGTNC----DDHFPNGITNGAYWYDVKGGMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFWK 76 (152)
Q Consensus 1 ~F~~LA~~Ya~~h~~M~~~~~C----~~~F~~GItNGA~WY~~~GgmqD~nY~~~nc~eiTlElsc~K~P~~~~L~~~W~ 76 (152)
+|+.||..||.+|+.|+.+.+| +..|..||+||+.||++.||||||.|....|+++|+||+|+|+||+++++.+|.
T Consensus 204 ~~~~la~~~a~~~~~~~~~~~~~~~~~~~y~~G~~~~~~~Y~~~G~~~Dw~y~~~~~~~~t~El~~~~~p~~~~i~~i~~ 283 (374)
T cd03858 204 LFRYLAKTYADAHPTMHKGGPCCCNDDEEFPGGITNGAAWYSVTGGMQDWNYLHTNCFEITLELSCCKFPPASELPKYWE 283 (374)
T ss_pred HHHHHHHHHHHhCHHhcCCCCCCCcccccCCCCcEEcceeeEcCCCchhhhhhccCceEEEEeccCCCCCChhHhHHHHH
Confidence 4899999999999999986554 357999999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHhccCccceEEccCCCceeeEEEEEEcccCCCCCCCCChHHHHh
Q psy17399 77 DNKEALLAFMEQTHLGVKGGMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFWKD 131 (152)
Q Consensus 77 ~N~~all~~~~~vh~GIkG~V~D~~g~pI~~A~ItVe~~~~kfP~ts~lg~yWr~ 131 (152)
+|+++|+.+++++|.+|+|.|+|.+|.|++.|.|+|.+... -..++..|.|+..
T Consensus 284 en~~all~l~~~a~~~i~G~V~d~~g~pl~~A~V~i~~~~~-~~~Td~~G~f~~~ 337 (374)
T cd03858 284 ENREALLAYIEQVHRGIKGFVRDANGNPIANATISVEGINH-DVTTAEDGDYWRL 337 (374)
T ss_pred HHHHHHHHHHhhcCCceEEEEECCCCCccCCeEEEEeccee-eeEECCCceEEEe
Confidence 99999999999999999999999999999999999987553 3467778988754
No 11
>KOG2649|consensus
Probab=99.80 E-value=3e-20 Score=165.71 Aligned_cols=60 Identities=55% Similarity=1.077 Sum_probs=58.9
Q ss_pred ccceEEccCCCceeeEEEEEEcccCCCCCCCCChHHHHhCHHHHHHHHHHhhcccceeeC
Q psy17399 93 VKGGMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFWKDNKEALLAFMEQTHLGVKGRME 152 (152)
Q Consensus 93 IkG~V~D~~g~pI~~A~ItVe~~~~kfP~ts~lg~yWr~n~~all~~~~~~~~gi~G~v~ 152 (152)
|.|.|||+||...+|+|||||++|.|||++++|+.+|++||+|||+||||||+||||+|.
T Consensus 326 v~GgMqDfnYLhTNCfEiTiElgC~KfP~e~eLp~~WE~Nr~sLl~f~eqvH~GIkG~V~ 385 (500)
T KOG2649|consen 326 VYGGMQDWNYLHTNCFEITLELSCEKFPKESELPTLWEYNRKSLLNFVEQVHRGIKGLVF 385 (500)
T ss_pred cCCcccchhhhhcCeEEEEEEeccccCCchhhhHHHHHhhHHHHHHHHHHHHhccceeEE
Confidence 899999999999999999999999999999999999999999999999999999999983
No 12
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Proteins belonging to this subgroup include CP-like protein X1 (CPX1), CP-like protein X2 (CPX2), and aortic CP-like protein (ACLP) and its isoform adipocyte enhancer binding protein-1 (AEBP1). AEBP1 is a truncated form of ACLP, which may arise from alternative splicing of the gene. These proteins are inactive towards standard CP substrates because they lack one or more critical active site and substrate-binding residues that are necessary for activity. They may function as binding proteins rather than as active CPs or display catalytic activity toward other substrates. Pro
Probab=99.78 E-value=1.1e-19 Score=160.11 Aligned_cols=60 Identities=52% Similarity=1.022 Sum_probs=58.5
Q ss_pred ccceEEccCCCceeeEEEEEEcccCCCCCCCCChHHHHhCHHHHHHHHHHhhcccceeeC
Q psy17399 93 VKGGMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFWKDNKEALLAFMEQTHLGVKGRME 152 (152)
Q Consensus 93 IkG~V~D~~g~pI~~A~ItVe~~~~kfP~ts~lg~yWr~n~~all~~~~~~~~gi~G~v~ 152 (152)
|.|.|||++|...+|+|||+|++|+|||++++++.||.+||+|||+||||||+||||+|.
T Consensus 277 ~~GgmqD~nY~~~ncfEiTlElsc~K~P~~~~L~~~W~~N~~all~~~~~vh~GikG~V~ 336 (405)
T cd03869 277 VAGSMNDFSYLHTNCFELSVYLGCDKFPHESELPEEWENNKESLLVFMEQVHRGIKGVVR 336 (405)
T ss_pred CCCcccchhhhccCeEEEEEeccCCCCCChHHHHHHHHHHHHHHHHHHHHHhcCceEEEE
Confidence 679999999999999999999999999999999999999999999999999999999993
No 13
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=99.76 E-value=3.1e-19 Score=156.65 Aligned_cols=60 Identities=50% Similarity=1.002 Sum_probs=58.8
Q ss_pred ccceEEccCCCceeeEEEEEEcccCCCCCCCCChHHHHhCHHHHHHHHHHhhcccceeeC
Q psy17399 93 VKGGMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFWKDNKEALLAFMEQTHLGVKGRME 152 (152)
Q Consensus 93 IkG~V~D~~g~pI~~A~ItVe~~~~kfP~ts~lg~yWr~n~~all~~~~~~~~gi~G~v~ 152 (152)
|.|.|||++|...+|+|||||++|+|||++++++.||.+||+|||+||+|||+||||+|.
T Consensus 264 ~~GgmqD~~Y~~~nc~e~t~el~c~k~p~~~~l~~~w~~n~~all~~~~~~~~gI~G~V~ 323 (392)
T cd03864 264 LSKGMQDFNYLHTNCFEITLELSCDKFPPEEELEREWLGNREALISYIEQVHQGIKGMVT 323 (392)
T ss_pred cCCCchhhhhhccCeeEEEEeccccCCCCHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEE
Confidence 899999999999999999999999999999999999999999999999999999999983
No 14
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3.4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
Probab=99.75 E-value=3.9e-19 Score=156.59 Aligned_cols=60 Identities=57% Similarity=1.086 Sum_probs=58.7
Q ss_pred ccceEEccCCCceeeEEEEEEcccCCCCCCCCChHHHHhCHHHHHHHHHHhhcccceeeC
Q psy17399 93 VKGGMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFWKDNKEALLAFMEQTHLGVKGRME 152 (152)
Q Consensus 93 IkG~V~D~~g~pI~~A~ItVe~~~~kfP~ts~lg~yWr~n~~all~~~~~~~~gi~G~v~ 152 (152)
|.|.|||++|...+|+|||||++|+|||++++|+.||++||+|||+||+|+|+||+|+|.
T Consensus 274 ~~GgmqD~ny~~~nc~eiT~El~c~K~P~~~~L~~~W~~n~~all~~~~q~~~gI~G~V~ 333 (402)
T cd03865 274 VPGGMQDFNYLSSNCFEITVELSCDKFPPEETLKQYWEDNKNSLVNYIEQVHRGVKGFVK 333 (402)
T ss_pred cCCcccchhhhccCceEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHhccceEEEEE
Confidence 799999999999999999999999999999999999999999999999999999999983
No 15
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=99.67 E-value=2.2e-17 Score=144.20 Aligned_cols=59 Identities=54% Similarity=1.157 Sum_probs=57.6
Q ss_pred ccceEEccCCCceeeEEEEEEcccCCCCCCCCChHHHHhCHHHHHHHHHHhhcccceee
Q psy17399 93 VKGGMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFWKDNKEALLAFMEQTHLGVKGRM 151 (152)
Q Consensus 93 IkG~V~D~~g~pI~~A~ItVe~~~~kfP~ts~lg~yWr~n~~all~~~~~~~~gi~G~v 151 (152)
+.|.|+|++|...+|+++|+|++|+|||+++++++||.+||+|||+||+|||+||||+|
T Consensus 245 ~~GgmqDw~y~~~~~~e~T~El~~~k~p~~~~l~~~w~~n~~all~~~~~~~~gI~G~V 303 (375)
T cd03863 245 VPGGMQDWNYLNTNCFEVTIELGCVKYPKEEELPKYWEQNRRSLLQFMKQVHRGVRGFV 303 (375)
T ss_pred cCCChhhhhhhhcCeEEEEEecCcccCCCHHHHHHHHHHHHHHHHHHHHHhcCeEEEEE
Confidence 58999999999999999999999999999999999999999999999999999999998
No 16
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=99.64 E-value=6e-17 Score=140.85 Aligned_cols=60 Identities=42% Similarity=0.859 Sum_probs=57.9
Q ss_pred ccceEEccCCCceeeEEEEEEcccCCCCCCCCChHHHHhCHHHHHHHHHHhhcccceeeC
Q psy17399 93 VKGGMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFWKDNKEALLAFMEQTHLGVKGRME 152 (152)
Q Consensus 93 IkG~V~D~~g~pI~~A~ItVe~~~~kfP~ts~lg~yWr~n~~all~~~~~~~~gi~G~v~ 152 (152)
|.|.|||++|...+|.+||+|++|+|||+.++++++|++||+|||+||++||+||+|+|.
T Consensus 235 ~~g~mqd~~y~~~~~~e~t~e~~~~k~P~~~~l~~~w~~n~~all~~~~~~~~gI~G~V~ 294 (363)
T cd06245 235 HLGSMKDFSVDFGHCPEITVYTSCCLFPSASQLPDLWAENKKSLLSMIVEAHKGVHGVVT 294 (363)
T ss_pred ccCCcchhhhhhcCCceeEEEeccccCCCHHHHHHHHHHHHHHHHHHHHHcCcEEEEEEE
Confidence 459999999999999999999999999999999999999999999999999999999983
No 17
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=99.48 E-value=2.1e-14 Score=125.46 Aligned_cols=60 Identities=58% Similarity=1.267 Sum_probs=57.7
Q ss_pred ccceEEccCCCceeeEEEEEEcccCCCCCCCCChHHHHhCHHHHHHHHHHhhcccceeeC
Q psy17399 93 VKGGMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFWKDNKEALLAFMEQTHLGVKGRME 152 (152)
Q Consensus 93 IkG~V~D~~g~pI~~A~ItVe~~~~kfP~ts~lg~yWr~n~~all~~~~~~~~gi~G~v~ 152 (152)
+.|.++|+++....|.++|+|++|+|||+++++..+|++||+|||+||+++|.||+|.|.
T Consensus 243 ~sG~~~Dw~y~~~~~~~~T~El~~~k~p~~~~l~~~w~~n~~~ll~~i~q~~~gI~G~V~ 302 (376)
T cd03866 243 LQGGMQDYNYVWAQCFEITLELSCCKYPPEEQLPAFWEDNKAALIEYIKQVHLGVKGQVF 302 (376)
T ss_pred cCCCchhhhhhhCceEEEEEEecCCCCCCHHHHHHHHHHhHHHHHHHHHHhcCceEEEEE
Confidence 489999999988899999999999999999999999999999999999999999999983
No 18
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=99.30 E-value=1.8e-12 Score=112.55 Aligned_cols=60 Identities=62% Similarity=1.231 Sum_probs=57.1
Q ss_pred ccceEEccCCCceeeEEEEEEcccCCCCCCCCChHHHHhCHHHHHHHHHHhhcccceeeC
Q psy17399 93 VKGGMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFWKDNKEALLAFMEQTHLGVKGRME 152 (152)
Q Consensus 93 IkG~V~D~~g~pI~~A~ItVe~~~~kfP~ts~lg~yWr~n~~all~~~~~~~~gi~G~v~ 152 (152)
+.|.++|+.+....+.++|+|++|+|||+++++..+|++||+|||+||+++|.||+|.|.
T Consensus 244 ~~G~~~Dw~y~~~~~~~~T~El~~~~~p~~~~l~~~w~~n~~al~~~~~~~~~~i~G~V~ 303 (372)
T cd03868 244 VPGGMQDYNYLHSNCFEITLELSCCKYPPASELPEEWNNNRESLLAYLEQVHIGVKGFVR 303 (372)
T ss_pred CCCCcchhhhhccCeeEEEEEecCCCCCCHHHHHHHHHHhHHHHHHHHHHhCCceEEEEE
Confidence 679999999888889999999999999999999999999999999999999999999983
No 19
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPZ is a secreted Zn-dependent enzyme whose biological function is largely unknown. Unlike other members of the N/E subfamily, CPZ has a bipartite structure, which consists of an N-terminal cysteine-rich domain (CRD) whose sequence is similar to Wnt-binding proteins, and a C-terminal CP catalytic domain that removes C-terminal Arg residues from substrates. CPZ is enriched in the extracellular matrix and is widely distributed during early embryogenesis. That the CRD of CPZ can bind to Wnt4 suggests that CPZ plays a role in Wnt signaling.
Probab=99.21 E-value=6.7e-12 Score=110.22 Aligned_cols=60 Identities=55% Similarity=1.040 Sum_probs=57.1
Q ss_pred ccceEEccCCCceeeEEEEEEcccCCCCCCCCChHHHHhCHHHHHHHHHHhhcccceeeC
Q psy17399 93 VKGGMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFWKDNKEALLAFMEQTHLGVKGRME 152 (152)
Q Consensus 93 IkG~V~D~~g~pI~~A~ItVe~~~~kfP~ts~lg~yWr~n~~all~~~~~~~~gi~G~v~ 152 (152)
+.|.++|+++....|.++|+|++|+|||+.+++..+|++|++||+++|++||+||+|+|.
T Consensus 266 ~sG~~~Dw~y~~~~~~~~T~EL~~~~~pp~~~i~~~~~e~~~~l~~~~~~~~~~i~G~V~ 325 (395)
T cd03867 266 FSGGMSDFNYLHTNCFEVTVELGCDKFPPEEELYTIWQENKEALLSFMEMVHRGIKGFVK 325 (395)
T ss_pred cCCCcchhhhhccCceEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHhccceeEEEEE
Confidence 788899999888889999999999999999999999999999999999999999999983
No 20
>cd06226 M14_CPT_like Peptidase M14-like domain of an uncharacterized group of Peptidase M14 Carboxypeptidase (CP) T (CPT)-like proteins. This group belongs to the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPT exhibits dual-substrate specificity by cleaving C-terminal hydrophobic amino acid residues and C-terminal positively charged residues. However, CPT does not belong to this CPT-like group.
Probab=99.19 E-value=1.5e-11 Score=104.43 Aligned_cols=70 Identities=24% Similarity=0.380 Sum_probs=58.7
Q ss_pred hHHHHHHHHhcCcCCCCCCCCCCCCCCCccccceeeecCCCcccceeeecceeEEEEeeccCCCCCCCCc-hHHHHhcHH
Q psy17399 2 FKHLAQTYANGNPVMKTGTNCDDHFPNGITNGAYWYDVKGGMQDFNYVYSNCFEVTFELSCCKFPRASQM-PKFWKDNKE 80 (152)
Q Consensus 2 F~~LA~~Ya~~h~~M~~~~~C~~~F~~GItNGA~WY~~~GgmqD~nY~~~nc~eiTlElsc~K~P~~~~L-~~~W~~N~~ 80 (152)
|+.||..++..+ + +. .++++.||+..|+++||.|...+++.+|+||+|++||+.+++ +.+|++||+
T Consensus 221 ~~~la~~~~~~~-----g------y~--~~~~~~~Y~~~G~~~Dw~y~~~gi~s~TiElg~~~~~~~~~~~~~~~~~n~~ 287 (293)
T cd06226 221 LRALGRKFASFN-----G------YT--PQQSVGLYPTDGTTDDWSYGELGVAAYTFEIGTSFFQSCSSFESGILPDNRP 287 (293)
T ss_pred HHHHHHHHhhcC-----C------cc--ccccceEEecCCChhHhHhhcCCceEEEEEccCCCCCCcccccccccccCHH
Confidence 577888776421 1 11 167889999999999999999999999999999999998866 899999999
Q ss_pred HHHH
Q psy17399 81 ALLA 84 (152)
Q Consensus 81 all~ 84 (152)
||+-
T Consensus 288 ~~~~ 291 (293)
T cd06226 288 ALYY 291 (293)
T ss_pred HHhh
Confidence 9974
No 21
>cd03859 M14_CPT Peptidase M14-like domain of carboxypeptidase (CP) T (CPT), CPT belongs to the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPT has moderate similarity to CPA and CPB, and exhibits dual-substrate specificity by cleaving C-terminal hydrophobic amino acid residues like CPA and C-terminal positively charged residues like CPB. CPA and CPB are M14 family peptidases but do not belong to this CPT group. The substrate specificity difference between CPT and CPA and CPB is ascribed to a few amino acid substitutions at the substrate-binding pocket while the spatial organization of the binding site remains the same as in all Zn-CPs. CPT has increased thermal stability in presence of Ca2+ ions, and two disulfide bridges which give an additional stabilization factor.
Probab=99.02 E-value=9.1e-11 Score=99.04 Aligned_cols=68 Identities=24% Similarity=0.365 Sum_probs=58.4
Q ss_pred hHHHHHHHHhcCcCCCCCCCCCCCCCCCccccceeeecCCCcccceeeecceeEEEEeeccCC-----CCCCCCchHHHH
Q psy17399 2 FKHLAQTYANGNPVMKTGTNCDDHFPNGITNGAYWYDVKGGMQDFNYVYSNCFEVTFELSCCK-----FPRASQMPKFWK 76 (152)
Q Consensus 2 F~~LA~~Ya~~h~~M~~~~~C~~~F~~GItNGA~WY~~~GgmqD~nY~~~nc~eiTlElsc~K-----~P~~~~L~~~W~ 76 (152)
|+.||..+|..+ + |.-|. .+.||++.|+|+||.|.+.+|+.+|+||++.+ +||+++++..|+
T Consensus 223 ~~~la~~~~~~~-----~------y~~~~--~~~~Y~~~G~~~Dw~y~~~~~~~~t~El~~~~~~~gf~~p~~~i~~~~~ 289 (295)
T cd03859 223 FVALGGTMAESN-----G------YTPKV--SSDLYTANGDADDWMYGRHKIISLTPEMGPESGGTGFYPPDEEISRETS 289 (295)
T ss_pred HHHHHHHHHHHh-----C------CcccC--cceeEecCCchHHHHhhCCCcEEEEEEeCCCCCCCCCcCCHHHHHHHHH
Confidence 688899888875 1 33343 46799999999999999999999999999965 899999999999
Q ss_pred hcHHHH
Q psy17399 77 DNKEAL 82 (152)
Q Consensus 77 ~N~~al 82 (152)
+|+++|
T Consensus 290 ~~~~~~ 295 (295)
T cd03859 290 RNYPAL 295 (295)
T ss_pred hccCCC
Confidence 999875
No 22
>PF00246 Peptidase_M14: Zinc carboxypeptidase This is family M14 in the peptidase classification. ; InterPro: IPR000834 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of sequences contain a diverse range of gene families, which include metallopeptidases belonging to MEROPS peptidase family M14 (carboxypeptidase A, clan MC), subfamilies M14A and M14B. The carboxypeptidase A family can be divided into two subfamilies: carboxypeptidase H (regulatory) and carboxypeptidase A (digestive) []. Members of the H family have longer C-termini than those of family A [], and carboxypeptidase M (a member of the H family) is bound to the membrane by a glycosylphosphatidylinositol anchor, unlike the majority of the M14 family, which are soluble []. The zinc ligands have been determined as two histidines and a glutamate, and the catalytic residue has been identified as a C-terminal glutamate, but these do not form the characteristic metalloprotease HEXXH motif [, ]. Members of the carboxypeptidase A family are synthesised as inactive molecules with propeptides that must be cleaved to activate the enzyme. Structural studies of carboxypeptidases A and B reveal the propeptide to exist as a globular domain, followed by an extended alpha-helix; this shields the catalytic site, without specifically binding to it, while the substrate-binding site is blocked by making specific contacts [, ]. Other examples of protein families in this entry include: Intron maturase Putative mitochondrial processing peptidase alpha subunit Superoxide dismutase [Mn] (1.15.1.1 from EC) Asparagine synthetase [glutamine-hydrolysing] 3 (6.3.5.4 from EC) Glucose-6-phosphate isomerase (5.3.1.9 from EC) ; GO: 0004181 metallocarboxypeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 3DGV_A 3OSL_C 3D4U_A 2NSM_A 1QMU_A 1H8L_A 2PJ2_A 2PJ9_A 1ZG8_A 1Z5R_A ....
Probab=98.87 E-value=2.4e-10 Score=94.37 Aligned_cols=76 Identities=37% Similarity=0.798 Sum_probs=67.8
Q ss_pred hHHHHHHHHhcCcCCCCCCCCCCCC-CCCccccceeeecCCCcccceeeecce-eEEEEeeccCC--CCCCCCchHHHHh
Q psy17399 2 FKHLAQTYANGNPVMKTGTNCDDHF-PNGITNGAYWYDVKGGMQDFNYVYSNC-FEVTFELSCCK--FPRASQMPKFWKD 77 (152)
Q Consensus 2 F~~LA~~Ya~~h~~M~~~~~C~~~F-~~GItNGA~WY~~~GgmqD~nY~~~nc-~eiTlElsc~K--~P~~~~L~~~W~~ 77 (152)
++.||..++.+.+.|..+. .| .-|+++++.||+..|+++||-|...++ +.+|+||+|++ +|+++++..+|++
T Consensus 200 ~~~la~~~~~~~~~~~~~~----~y~~~~~~~~~~~~~~~G~~~D~~~~~~g~~~~~t~E~~~~~~f~p~~~~i~~~~~~ 275 (279)
T PF00246_consen 200 LRSLARAFAEALGSMSRGQ----NYDSYGITNGDNWYPASGSSDDYAYYHHGIPFSFTLELGCCGNFYPPASEIEPIWEE 275 (279)
T ss_dssp HHHHHHHHHHHHHCHTTTT----TBSEEEEEHHHHTTTTSSSHHHHHHHHTTSSEEEEEEESSSSSTSS-GGGHHHHHHH
T ss_pred hhHHHHHHHHHhhhccccc----cccccCCcccccccccccccceeehhhcCCcEEEEEEeCCCCCccCCHHHHHHHHHH
Confidence 6789999999999988742 24 889999999999999999999999999 99999999999 8999999999999
Q ss_pred cHHH
Q psy17399 78 NKEA 81 (152)
Q Consensus 78 N~~a 81 (152)
|.+|
T Consensus 276 ~~~~ 279 (279)
T PF00246_consen 276 NWEA 279 (279)
T ss_dssp HHH-
T ss_pred HhhC
Confidence 9875
No 23
>cd00596 Peptidase_M14_like The M14 family of metallocarboxypeptidases (MCPs) are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly different specificities, with Carboxypeptidase A1 (CPA1) preferring
Probab=98.53 E-value=8.8e-08 Score=75.04 Aligned_cols=71 Identities=35% Similarity=0.559 Sum_probs=59.8
Q ss_pred hHHHHHHHHhcCcCCCCCCCCCCCCCCCccccceeeecCCCcccceeeecceeEEEEeeccCCCCCCCCchHHHHhcHHH
Q psy17399 2 FKHLAQTYANGNPVMKTGTNCDDHFPNGITNGAYWYDVKGGMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFWKDNKEA 81 (152)
Q Consensus 2 F~~LA~~Ya~~h~~M~~~~~C~~~F~~GItNGA~WY~~~GgmqD~nY~~~nc~eiTlElsc~K~P~~~~L~~~W~~N~~a 81 (152)
++.+|..++..+. .+..++.+.+.||+..|++.||.|...+|+.+|+|+++++.|+.+.+...|+.|+.+
T Consensus 126 ~~~~a~~~~~~~~----------~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~tiE~g~~~~~~~~~~~~~~~~~~~~ 195 (196)
T cd00596 126 PKALAQLLADAAR----------GSKYGVGFGAKWYETGGGFDDWAYGNHGCPSFTIELGGQGYPPEEELPSRGEENKEA 195 (196)
T ss_pred HHHHHHHHHHhcc----------CCCCceeecceEEEcCCchhhhhhhCCCcEEEEEEeCCCCCCCHHHHHHHHHHHHhh
Confidence 3455556655554 245678888899999999999999988999999999999999999999999999876
Q ss_pred H
Q psy17399 82 L 82 (152)
Q Consensus 82 l 82 (152)
|
T Consensus 196 ~ 196 (196)
T cd00596 196 L 196 (196)
T ss_pred C
Confidence 4
No 24
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
Probab=98.50 E-value=9.3e-08 Score=82.96 Aligned_cols=60 Identities=63% Similarity=1.275 Sum_probs=55.3
Q ss_pred ccceEEccCCCceeeEEEEEEcccCCCCCCCCChHHHHhCHHHHHHHHHHhhcccceeeC
Q psy17399 93 VKGGMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFWKDNKEALLAFMEQTHLGVKGRME 152 (152)
Q Consensus 93 IkG~V~D~~g~pI~~A~ItVe~~~~kfP~ts~lg~yWr~n~~all~~~~~~~~gi~G~v~ 152 (152)
+.|.++|+.+..-.+..+|+|++|+++|+.+++..+|.+|+++|+.++++++.+|+|.|.
T Consensus 246 ~~G~~~Dw~y~~~~~~~~t~El~~~~~p~~~~i~~i~~en~~all~l~~~a~~~i~G~V~ 305 (374)
T cd03858 246 VTGGMQDWNYLHTNCFEITLELSCCKFPPASELPKYWEENREALLAYIEQVHRGIKGFVR 305 (374)
T ss_pred cCCCchhhhhhccCceEEEEeccCCCCCChhHhHHHHHHHHHHHHHHHhhcCCceEEEEE
Confidence 578889987666678999999999999999999999999999999999999999999983
No 25
>cd06248 M14_CPA_CPB_like Peptidase M14 Carboxypeptidase A/B-like subfamily: This is one of two main M14 carboxypeptidase subfamilies, defined by sequence and structural homology, the other being N/E. Carboxypeptidases (CPs) hydrolyze single, C-terminal amino acids from polypeptide chains. They have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Majority of the proteins in this subfamily have not been characterized as yet. The A/B enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; the proenzymes are called procarboxypeptidases. These enzymes exhibit distinct substrate specificity pattern; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. There are nine members in the A/B family: CPA1, CPA2, CPA3, CPA4, CPA5,
Probab=98.33 E-value=5.1e-07 Score=76.90 Aligned_cols=82 Identities=16% Similarity=0.204 Sum_probs=65.0
Q ss_pred hHHHHHHHHhcCcCCCCCCCCCCCCCCCccccceeeecCCCcccceeeecc-eeEEEEeeccC---CC-CCCCCchHHHH
Q psy17399 2 FKHLAQTYANGNPVMKTGTNCDDHFPNGITNGAYWYDVKGGMQDFNYVYSN-CFEVTFELSCC---KF-PRASQMPKFWK 76 (152)
Q Consensus 2 F~~LA~~Ya~~h~~M~~~~~C~~~F~~GItNGA~WY~~~GgmqD~nY~~~n-c~eiTlElsc~---K~-P~~~~L~~~W~ 76 (152)
|+.||..+|.+....+. ..|.-|... +.||+..|+++||.|...+ |+.+|+||.+. -| ||+++....-+
T Consensus 218 ~~~la~~~a~ai~~~~g-----~~y~~g~~~-~~~y~~~G~~~D~~y~~~gi~~~~t~El~~~~~~gf~~p~~~i~p~~~ 291 (304)
T cd06248 218 LEELAAGLAKAIRAVSG-----TTYTVGPAC-NTLYQTTGSSVDWVYHVAGAAWSYQLELRDTGTYGFVLPAKQIIPTGE 291 (304)
T ss_pred HHHHHHHHHHHHHHhcC-----CCCcccccc-cccccCCCCcchhhhccCCCcEEEEEEeCCCCCCCCCCCHHHCcchhH
Confidence 78899999988665432 345555433 7899999999999999988 99999999763 34 78888888899
Q ss_pred hcHHHHHHHHHHh
Q psy17399 77 DNKEALLAFMEQT 89 (152)
Q Consensus 77 ~N~~all~~~~~v 89 (152)
+.-.++..+++.+
T Consensus 292 e~~~~~~~~~~~~ 304 (304)
T cd06248 292 ETWAGIKYLLKFI 304 (304)
T ss_pred HHHHHHHHHHhhC
Confidence 9988888887653
No 26
>cd03860 M14_CP_A-B_like The Peptidase M14 Carboxypeptidase (CP) A/B subfamily is one of two main M14 CP subfamilies defined by sequence and structural homology, the other being the N/E subfamily. CPs hydrolyze single, C-terminal amino acids from polypeptide chains. They have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. There are nine members in the A/B family: CPA1, CPA2, CPA3, CPA4, CPA5, CPA6, CPB, CPO and CPU. CPA1, CPA2 and CPB are produced by the
Probab=98.30 E-value=7e-07 Score=75.28 Aligned_cols=81 Identities=19% Similarity=0.280 Sum_probs=64.8
Q ss_pred hHHHHHHHHhcCcCCCCCCCCCCCCCCCccccceeeecCCCcccceeeecc-eeEEEEeeccCC----CCCCCCchHHHH
Q psy17399 2 FKHLAQTYANGNPVMKTGTNCDDHFPNGITNGAYWYDVKGGMQDFNYVYSN-CFEVTFELSCCK----FPRASQMPKFWK 76 (152)
Q Consensus 2 F~~LA~~Ya~~h~~M~~~~~C~~~F~~GItNGA~WY~~~GgmqD~nY~~~n-c~eiTlElsc~K----~P~~~~L~~~W~ 76 (152)
|+.||..++.+-+..+. ..+.-|.. ...||+..|+++||.|...+ ++.+|+||+|+. +||+++.....+
T Consensus 208 ~~~la~~~~~~~~~~~g-----~~Y~~g~~-~~~~y~~~G~~~Dw~y~~~~~~~~~t~El~~~~~~gf~~p~~~i~~~~~ 281 (294)
T cd03860 208 LREVAKAAADAIRAVYG-----TRYTVGSS-AETLYPASGGSDDWAYGVAGIPYSYTLELRDTGRYGFLLPASQIIPTAE 281 (294)
T ss_pred HHHHHHHHHHHHHHhcC-----CCCccccc-cCccccCCCchhhhhhccCCCcEEEEEEecCCCCCCCcCChHHchhHHH
Confidence 67888888887654431 23444443 35799999999999999885 699999999863 699999999999
Q ss_pred hcHHHHHHHHHH
Q psy17399 77 DNKEALLAFMEQ 88 (152)
Q Consensus 77 ~N~~all~~~~~ 88 (152)
+.-..|+.|.++
T Consensus 282 e~~~~~~~~~~~ 293 (294)
T cd03860 282 ETFAGIKAMADE 293 (294)
T ss_pred HHHHHHHHHHhh
Confidence 999999998865
No 27
>cd03871 M14_CPB Peptidase M14 Carboxypeptidase B (CPB) belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Carboxypeptidase B (CPB) enzymes only cleave the basic residues lysine or arginine. A/B subfamily enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The procarboxypeptidase B (PCPB) is produced by the exocrine pancreas and stored as stable zymogen in the pancreatic granules until secretion into the digestive tract occurs. PCPB has been reported to be a good serum marker for the diagnosis of acute pancreatitis and graft rejection in pancreas transplant recipients.
Probab=98.21 E-value=9.9e-07 Score=75.33 Aligned_cols=82 Identities=21% Similarity=0.253 Sum_probs=63.5
Q ss_pred hHHHHHHHHhcCcCCCCCCCCCCCCCCCccccceeeecCCCcccceeeecceeEEEEeeccC---CC-CCCCCchHHHHh
Q psy17399 2 FKHLAQTYANGNPVMKTGTNCDDHFPNGITNGAYWYDVKGGMQDFNYVYSNCFEVTFELSCC---KF-PRASQMPKFWKD 77 (152)
Q Consensus 2 F~~LA~~Ya~~h~~M~~~~~C~~~F~~GItNGA~WY~~~GgmqD~nY~~~nc~eiTlElsc~---K~-P~~~~L~~~W~~ 77 (152)
|+.||.+.+.+...++ +..| .-| +.++.||+..|+++||.|....|+.+|+||+|. .| ||+++....|++
T Consensus 214 ~~~la~~~~~ai~~~~-g~~y----~~g-~~~~~~Y~a~G~s~Dw~y~~~~~~s~t~El~~~g~~gf~lp~~~I~~~~~E 287 (300)
T cd03871 214 LNSVAKGAVKELASLY-GTKY----TYG-PGATTIYPAAGGSDDWAYDQGIKYSFTFELRDKGRYGFLLPESQIKPTCEE 287 (300)
T ss_pred HHHHHHHHHHHHHHhh-CCCC----cCC-ccccccccCCCCHHHHHhcCCCcEEEEEEeCCCCCCCCCCCHHHCccccHH
Confidence 6788888777665554 3323 222 237899999999999999999999999999884 35 778899999998
Q ss_pred cHHHHHHHHHHh
Q psy17399 78 NKEALLAFMEQT 89 (152)
Q Consensus 78 N~~all~~~~~v 89 (152)
.-.++..+.+++
T Consensus 288 ~~~~i~~~~~~~ 299 (300)
T cd03871 288 TMLAVKYIANYV 299 (300)
T ss_pred HHHHHHHHHHhh
Confidence 888887777654
No 28
>smart00631 Zn_pept Zn_pept.
Probab=97.99 E-value=6.3e-06 Score=68.78 Aligned_cols=54 Identities=33% Similarity=0.463 Sum_probs=45.0
Q ss_pred ChHHHHHHHHhcCcCCCCCCCCCCCCCCCccccceeeecCCCcccceeeecc-eeEEEEeeccCC
Q psy17399 1 MFKHLAQTYANGNPVMKTGTNCDDHFPNGITNGAYWYDVKGGMQDFNYVYSN-CFEVTFELSCCK 64 (152)
Q Consensus 1 ~F~~LA~~Ya~~h~~M~~~~~C~~~F~~GItNGA~WY~~~GgmqD~nY~~~n-c~eiTlElsc~K 64 (152)
+|+.||.+++..|+. .|+-|..+++ +|+..|+++||.|.+.+ |+.+|+||+|++
T Consensus 208 ~~~~~~~~~~~~~g~---------~y~~g~~~~~-~y~~~G~~~D~~~~~~gi~~~~t~El~~~~ 262 (277)
T smart00631 208 VAKALAKALASVHGT---------RYTYGISNGA-IYPASGGSDDWAYGTLGIPFSFTLELRDDG 262 (277)
T ss_pred HHHHHHHHHHHhcCC---------ccccccccCc-ccCCCCchhhhhhccCCCcEEEEEEecCCC
Confidence 367788888887654 3566888888 67789999999999888 999999999986
No 29
>cd03870 M14_CPA Peptidase M14 Carboxypeptidase (CP) A (CPA) belongs to the A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPA enzymes generally favor hydrophobic residues. A/B subfamily enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The procarboxypeptidase A (PCPA) is produced by the exocrine pancreas and stored as a stable zymogen in the pancreatic granules until secretion into the digestive tract occurs. This subfamily includes CPA1, CPA2 and CPA4 forms. Within these A forms, there are slightly different specificities, with CPA1 preferring aliphatic and small aromatic residues, and CPA2 p
Probab=97.88 E-value=1.9e-05 Score=67.44 Aligned_cols=82 Identities=24% Similarity=0.304 Sum_probs=57.9
Q ss_pred hHHHHHHHHhcCcCCCCCCCCCCCCCCCccccceeeecCCCcccceeeecceeEEEEeeccCC---C-CCCCCchHHHHh
Q psy17399 2 FKHLAQTYANGNPVMKTGTNCDDHFPNGITNGAYWYDVKGGMQDFNYVYSNCFEVTFELSCCK---F-PRASQMPKFWKD 77 (152)
Q Consensus 2 F~~LA~~Ya~~h~~M~~~~~C~~~F~~GItNGA~WY~~~GgmqD~nY~~~nc~eiTlElsc~K---~-P~~~~L~~~W~~ 77 (152)
++.||...+.+....+. ..|.-|... +.||+.+|++.||.|....++..|+||.+.. | ||+++....=++
T Consensus 213 ~~~la~~~~~ai~~~~g-----~~y~~g~~~-~~~y~a~G~s~Dw~y~~~~~~s~t~El~~~g~~gF~lP~~~i~p~~~E 286 (301)
T cd03870 213 LNQVAKSAVAALKSLYG-----TSYKYGSII-TTIYQASGGSIDWSYNQGIKYSFTFELRDTGRYGFLLPASQIIPTAQE 286 (301)
T ss_pred HHHHHHHHHHHHHHhcC-----Ccccccccc-ceeecCCCChhhhhhcCCCcEEEEEEeCCCCCCCCCCChHHCchhhHH
Confidence 56777777666655442 234444332 4799999999999999999999999999975 2 566666555566
Q ss_pred cHHHHHHHHHHh
Q psy17399 78 NKEALLAFMEQT 89 (152)
Q Consensus 78 N~~all~~~~~v 89 (152)
.-.+|..+++++
T Consensus 287 ~~~~i~~~~~~~ 298 (301)
T cd03870 287 TWLGLLTIMEHT 298 (301)
T ss_pred HHHHHHHHHHHH
Confidence 666666666654
No 30
>cd06246 M14_CPB2 Peptidase M14 Carboxypeptidase (CP) B2 (CPB2, also known as plasma carboxypeptidase B, carboxypeptidase U, and CPU), belongs to the carboxpeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPB2 enzyme displays B-like activity; it only cleaves the basic residues lysine or arginine. It is produced and secreted by the liver as the inactive precursor, procarboxypeptidase U or PCPB2, commonly referred to as thrombin-activatable fibrinolysis inhibitor (TAFI). It circulates in plasma as a zymogen bound to plasminogen, and the active enzyme, TAFIa, inhibits fibrinolysis. It is highly regulated, increased TAFI concentrations are thought to increase the risk of thrombosis and coronary artery disease by reducing fibrinolytic activity whil
Probab=97.75 E-value=2.7e-05 Score=66.50 Aligned_cols=82 Identities=18% Similarity=0.233 Sum_probs=58.7
Q ss_pred hHHHHHHHHhcCcCCCCCCCCCCCCCCCccccceeeecCCCcccceeeecceeEEEEeeccC---CC-CCCCCchHHHHh
Q psy17399 2 FKHLAQTYANGNPVMKTGTNCDDHFPNGITNGAYWYDVKGGMQDFNYVYSNCFEVTFELSCC---KF-PRASQMPKFWKD 77 (152)
Q Consensus 2 F~~LA~~Ya~~h~~M~~~~~C~~~F~~GItNGA~WY~~~GgmqD~nY~~~nc~eiTlElsc~---K~-P~~~~L~~~W~~ 77 (152)
++.||..++.+-..-+ +..|.-|. -+..||+..|+++||.|....++..|+||.|+ -| ||++++...-++
T Consensus 214 ~~~la~~~~~ai~~~~-----~~~y~~g~-~~~~~Y~a~G~s~Dw~y~~~~~~s~t~El~~~g~~gF~lp~~~I~p~~~E 287 (300)
T cd06246 214 LSLLAKEAVRAIRRTS-----NNRYTHGS-GAETIYLAPGGSDDWAYDLGIKYSFTFELRDTGTYGFLLPESYIKPTCSE 287 (300)
T ss_pred HHHHHHHHHHHHHHhh-----CCCCeecC-CCCeeeccCCChhhHhhcCCCCEEEEEEecCCCCCCCCCCHHHcccccHH
Confidence 5677777776432222 12343331 12368999999999999999999999999986 33 788888887887
Q ss_pred cHHHHHHHHHHh
Q psy17399 78 NKEALLAFMEQT 89 (152)
Q Consensus 78 N~~all~~~~~v 89 (152)
.-.++..+++++
T Consensus 288 ~~~~~~~~~~~~ 299 (300)
T cd06246 288 ALAAVKKIAWHV 299 (300)
T ss_pred HHHHHHHHHHhh
Confidence 777777777654
No 31
>cd06226 M14_CPT_like Peptidase M14-like domain of an uncharacterized group of Peptidase M14 Carboxypeptidase (CP) T (CPT)-like proteins. This group belongs to the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPT exhibits dual-substrate specificity by cleaving C-terminal hydrophobic amino acid residues and C-terminal positively charged residues. However, CPT does not belong to this CPT-like group.
Probab=96.67 E-value=0.00085 Score=57.29 Aligned_cols=47 Identities=26% Similarity=0.318 Sum_probs=38.4
Q ss_pred CccceEEccCCCceeeEEEEEEcccCCCCCCCC-ChHHHHhCHHHHHH
Q psy17399 92 GVKGGMQDFNYVYSNCFEVTFELSCCKFPRASQ-MPKFWKDNKEALLA 138 (152)
Q Consensus 92 GIkG~V~D~~g~pI~~A~ItVe~~~~kfP~ts~-lg~yWr~n~~all~ 138 (152)
.+.|...|+.+.......+|+|+++.+||..+. ++++|++||+|||-
T Consensus 244 ~~~G~~~Dw~y~~~gi~s~TiElg~~~~~~~~~~~~~~~~~n~~~~~~ 291 (293)
T cd06226 244 PTDGTTDDWSYGELGVAAYTFEIGTSFFQSCSSFESGILPDNRPALYY 291 (293)
T ss_pred ecCCChhHhHhhcCCceEEEEEccCCCCCCcccccccccccCHHHHhh
Confidence 357888898765555569999999999987665 58999999999973
No 32
>cd06247 M14_CPO Peptidase M14 carboxypeptidase (CP) O (CPO, also known as metallocarboxypeptidase C; EC 3.4.17.) belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPO has not been well characterized as yet, and little is known about it. Based on modeling studies, CPO has been suggested to have specificity for acidic residues rather than aliphatic/aromatic residues as in A-like enzymes or basic residues as in B-like enzymes. It remains to be demonstrated that CPO is functional as an MCP.
Probab=96.58 E-value=0.0026 Score=54.48 Aligned_cols=65 Identities=20% Similarity=0.290 Sum_probs=53.7
Q ss_pred CCCCCCccccceeeecCCCcccceeeecceeEEEEeeccC---CC-CCCCCchHHHHhcHHHHHHHHHHh
Q psy17399 24 DHFPNGITNGAYWYDVKGGMQDFNYVYSNCFEVTFELSCC---KF-PRASQMPKFWKDNKEALLAFMEQT 89 (152)
Q Consensus 24 ~~F~~GItNGA~WY~~~GgmqD~nY~~~nc~eiTlElsc~---K~-P~~~~L~~~W~~N~~all~~~~~v 89 (152)
..|.-|.. +..+|+.+|+..||.|...-.+..|+||... .| ||+++....-++.-.++..+++++
T Consensus 230 ~~y~~g~~-~~~~y~a~G~s~Dwa~~~~~~~s~t~El~~~g~~gF~lp~~~I~p~~~E~~~~i~~~~~~~ 298 (298)
T cd06247 230 TEYRVGSS-ALILYSNSGSSRDWAVDIGIPFSYTFELRDNGTYGFVLPEDQIQPTCEETMTAVMSMVEYV 298 (298)
T ss_pred CCCccCCc-ccccccCCCChhhhhhccCCCEEEEEEeCCCCCCCCCCChHHCcchhHHHHHHHHHHHhhC
Confidence 35666665 3578999999999999988889999999864 45 889999988999888888887653
No 33
>cd06229 M14_Endopeptidase_I Peptidase M14-like domain of Gamma-D-glutamyl-L-diamino acid endopeptidase 1 (also known as Gamma-D-glutamyl-meso-diaminopimelate peptidase I, and Endopeptidase I (ENP1); EC 3.4.19.11). ENP1 is a member of the M14 family of metallocarboxypeptidases (MCPs). However it has an exceptional type of activity of hydrolyzing the gamma-D-Glu-(L)meso-diaminopimelic acid (gamma-D-Glu-Dap) bond of L-Ala-gamma-D-Glu-(L)meso-diaminopimelic acid and L-Ala-gamma-D-Glu-(L)meso-diaminopimelic acid(L)-D-Ala peptides. ENP1has a different substrate specificity and cellular role than MpaA (MpaA does not belong to this group). ENP1 hydrolyzes the gamma-D-Glu-Dap bond of MurNAc-tripeptide and MurNAc-tetrapeptide, as well as the amide bond of free tripeptide and tetrapeptide . ENP1 is active on spore cortex peptidoglycan, and is produced at stage IV of sporulation in forespore and spore integuments.
Probab=95.65 E-value=0.0052 Score=50.93 Aligned_cols=44 Identities=25% Similarity=0.248 Sum_probs=40.0
Q ss_pred eecCCCcccceeeecceeEEEEeeccCCCC-CCCCchHHHHhcHH
Q psy17399 37 YDVKGGMQDFNYVYSNCFEVTFELSCCKFP-RASQMPKFWKDNKE 80 (152)
Q Consensus 37 Y~~~GgmqD~nY~~~nc~eiTlElsc~K~P-~~~~L~~~W~~N~~ 80 (152)
|+..|++.||-|-..++.-+|+||+-.+-| |.++.+..|++||.
T Consensus 209 ~~~~G~~~Dw~~~~~gi~s~t~El~~~~~~~~~~~~~~~~~~~~~ 253 (255)
T cd06229 209 KRSYGGYKDWFIQKFRRPGFTIEIGRGTNPLPLSQFKTIYKENKG 253 (255)
T ss_pred cCCCCCHHHHHHhhcCCeEEEEEeCCCCCCCChHHhHHHHHhhcC
Confidence 899999999999988999999999987664 68999999999985
No 34
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=91.73 E-value=0.042 Score=36.79 Aligned_cols=37 Identities=14% Similarity=-0.043 Sum_probs=24.3
Q ss_pred ccceEEccCCCceeeEEEEEEcccCCCC---CCCCChHHH
Q psy17399 93 VKGGMQDFNYVYSNCFEVTFELSCCKFP---RASQMPKFW 129 (152)
Q Consensus 93 IkG~V~D~~g~pI~~A~ItVe~~~~kfP---~ts~lg~yW 129 (152)
|+|.|+|.+|.|++.|.|++........ .++..|.|.
T Consensus 2 I~G~V~d~~g~pv~~a~V~l~~~~~~~~~~~~Td~~G~f~ 41 (82)
T PF13620_consen 2 ISGTVTDATGQPVPGATVTLTDQDGGTVYTTTTDSDGRFS 41 (82)
T ss_dssp EEEEEEETTSCBHTT-EEEET--TTTECCEEE--TTSEEE
T ss_pred EEEEEEcCCCCCcCCEEEEEEEeeCCCEEEEEECCCceEE
Confidence 7899999999999999999985444332 444455543
No 35
>cd03859 M14_CPT Peptidase M14-like domain of carboxypeptidase (CP) T (CPT), CPT belongs to the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPT has moderate similarity to CPA and CPB, and exhibits dual-substrate specificity by cleaving C-terminal hydrophobic amino acid residues like CPA and C-terminal positively charged residues like CPB. CPA and CPB are M14 family peptidases but do not belong to this CPT group. The substrate specificity difference between CPT and CPA and CPB is ascribed to a few amino acid substitutions at the substrate-binding pocket while the spatial organization of the binding site remains the same as in all Zn-CPs. CPT has increased thermal stability in presence of Ca2+ ions, and two disulfide bridges which give an additional stabilization factor.
Probab=90.81 E-value=0.062 Score=45.48 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=37.7
Q ss_pred ccceEEccCCCceeeEEEEEEcccCC-----CCCCCCChHHHHhCHHHH
Q psy17399 93 VKGGMQDFNYVYSNCFEVTFELSCCK-----FPRASQMPKFWKDNKEAL 136 (152)
Q Consensus 93 IkG~V~D~~g~pI~~A~ItVe~~~~k-----fP~ts~lg~yWr~n~~al 136 (152)
+.|...|+.+.......+|+|+++.. +|+++++...|++|+++|
T Consensus 247 ~~G~~~Dw~y~~~~~~~~t~El~~~~~~~gf~~p~~~i~~~~~~~~~~~ 295 (295)
T cd03859 247 ANGDADDWMYGRHKIISLTPEMGPESGGTGFYPPDEEISRETSRNYPAL 295 (295)
T ss_pred cCCchHHHHhhCCCcEEEEEEeCCCCCCCCCcCCHHHHHHHHHhccCCC
Confidence 56889998877667799999999854 699999999999999875
No 36
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=90.76 E-value=0.11 Score=35.38 Aligned_cols=35 Identities=14% Similarity=0.019 Sum_probs=27.0
Q ss_pred ccceEEccC-CCceeeEEEEEEcccCCCCCCCCChHH
Q psy17399 93 VKGGMQDFN-YVYSNCFEVTFELSCCKFPRASQMPKF 128 (152)
Q Consensus 93 IkG~V~D~~-g~pI~~A~ItVe~~~~kfP~ts~lg~y 128 (152)
|+|.|.|.. +.|++.|.|.+.... ..-.++..|.|
T Consensus 2 i~G~V~d~~t~~pl~~a~V~~~~~~-~~~~Td~~G~F 37 (88)
T PF13715_consen 2 ISGKVVDSDTGEPLPGATVYLKNTK-KGTVTDENGRF 37 (88)
T ss_pred EEEEEEECCCCCCccCeEEEEeCCc-ceEEECCCeEE
Confidence 689999965 999999999999876 33355555544
No 37
>PF00246 Peptidase_M14: Zinc carboxypeptidase This is family M14 in the peptidase classification. ; InterPro: IPR000834 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of sequences contain a diverse range of gene families, which include metallopeptidases belonging to MEROPS peptidase family M14 (carboxypeptidase A, clan MC), subfamilies M14A and M14B. The carboxypeptidase A family can be divided into two subfamilies: carboxypeptidase H (regulatory) and carboxypeptidase A (digestive) []. Members of the H family have longer C-termini than those of family A [], and carboxypeptidase M (a member of the H family) is bound to the membrane by a glycosylphosphatidylinositol anchor, unlike the majority of the M14 family, which are soluble []. The zinc ligands have been determined as two histidines and a glutamate, and the catalytic residue has been identified as a C-terminal glutamate, but these do not form the characteristic metalloprotease HEXXH motif [, ]. Members of the carboxypeptidase A family are synthesised as inactive molecules with propeptides that must be cleaved to activate the enzyme. Structural studies of carboxypeptidases A and B reveal the propeptide to exist as a globular domain, followed by an extended alpha-helix; this shields the catalytic site, without specifically binding to it, while the substrate-binding site is blocked by making specific contacts [, ]. Other examples of protein families in this entry include: Intron maturase Putative mitochondrial processing peptidase alpha subunit Superoxide dismutase [Mn] (1.15.1.1 from EC) Asparagine synthetase [glutamine-hydrolysing] 3 (6.3.5.4 from EC) Glucose-6-phosphate isomerase (5.3.1.9 from EC) ; GO: 0004181 metallocarboxypeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 3DGV_A 3OSL_C 3D4U_A 2NSM_A 1QMU_A 1H8L_A 2PJ2_A 2PJ9_A 1ZG8_A 1Z5R_A ....
Probab=80.68 E-value=0.33 Score=40.01 Aligned_cols=43 Identities=37% Similarity=0.825 Sum_probs=33.4
Q ss_pred ccceEEccCCCceee-EEEEEEcccCC--CCCCCCChHHHHhCHHH
Q psy17399 93 VKGGMQDFNYVYSNC-FEVTFELSCCK--FPRASQMPKFWKDNKEA 135 (152)
Q Consensus 93 IkG~V~D~~g~pI~~-A~ItVe~~~~k--fP~ts~lg~yWr~n~~a 135 (152)
+.|...|+-+..... ..+|+|.+|+. +|+.+++..+|++|.+|
T Consensus 234 ~~G~~~D~~~~~~g~~~~~t~E~~~~~~f~p~~~~i~~~~~~~~~~ 279 (279)
T PF00246_consen 234 ASGSSDDYAYYHHGIPFSFTLELGCCGNFYPPASEIEPIWEENWEA 279 (279)
T ss_dssp TSSSHHHHHHHHTTSSEEEEEEESSSSSTSS-GGGHHHHHHHHHH-
T ss_pred cccccceeehhhcCCcEEEEEEeCCCCCccCCHHHHHHHHHHHhhC
Confidence 446777765544555 89999999999 89999999999999875
No 38
>cd00596 Peptidase_M14_like The M14 family of metallocarboxypeptidases (MCPs) are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly different specificities, with Carboxypeptidase A1 (CPA1) preferring
Probab=71.00 E-value=2 Score=33.40 Aligned_cols=44 Identities=34% Similarity=0.590 Sum_probs=35.6
Q ss_pred ccceEEccCCCceeeEEEEEEcccCCCCCCCCChHHHHhCHHHH
Q psy17399 93 VKGGMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFWKDNKEAL 136 (152)
Q Consensus 93 IkG~V~D~~g~pI~~A~ItVe~~~~kfP~ts~lg~yWr~n~~al 136 (152)
..|...|+.+..-.+..+|+|.++...|+.+.+...|+.|+.+|
T Consensus 153 ~~g~~~d~~~~~~~~~~~tiE~g~~~~~~~~~~~~~~~~~~~~~ 196 (196)
T cd00596 153 TGGGFDDWAYGNHGCPSFTIELGGQGYPPEEELPSRGEENKEAL 196 (196)
T ss_pred cCCchhhhhhhCCCcEEEEEEeCCCCCCCHHHHHHHHHHHHhhC
Confidence 46777777655445789999999999988888999999988764
No 39
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=62.68 E-value=1.5 Score=32.72 Aligned_cols=81 Identities=17% Similarity=0.238 Sum_probs=51.4
Q ss_pred HHHHHHHhcCcCCCCCCCCCCCCCCCccccceeeecCCCcccceeeecceeEEEEeeccCCCCCCCCchHHHHhcHHHHH
Q psy17399 4 HLAQTYANGNPVMKTGTNCDDHFPNGITNGAYWYDVKGGMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFWKDNKEALL 83 (152)
Q Consensus 4 ~LA~~Ya~~h~~M~~~~~C~~~F~~GItNGA~WY~~~GgmqD~nY~~~nc~eiTlElsc~K~P~~~~L~~~W~~N~~all 83 (152)
.+|..+|-+.|....+. +....+|.. -+|+.+.|..+| -|+.-|..-|......+.++++|+-
T Consensus 29 R~A~~~SL~~~~~~~~~--~~~~d~g~e--~~~~t~~Ge~~~-------~~~~ll~q~~g~~~d~~~l~~~~~~------ 91 (113)
T PF08870_consen 29 RIAFCRSLEEPSIPSDE--DIKDDSGLE--LNWKTFTGEYDD-------IYEALLKQRYGPELDDEELPKYFKL------ 91 (113)
T ss_pred HHHHHHHHccCCCCCCC--ccCCCCCeE--EeeeeecCchHH-------HHHHHHHHHhCCCCCHHHHHHHHHH------
Confidence 57889999999987632 112344443 389999999999 4556677777444455666666653
Q ss_pred HHHHHhccCccceEEccCCCce
Q psy17399 84 AFMEQTHLGVKGGMQDFNYVYS 105 (152)
Q Consensus 84 ~~~~~vh~GIkG~V~D~~g~pI 105 (152)
-+|+||....-+.+-..|
T Consensus 92 ----Hl~rGi~~L~~~~~~~~i 109 (113)
T PF08870_consen 92 ----HLDRGIEYLSNDKNISSI 109 (113)
T ss_pred ----HHHHhHHHHhcccccccH
Confidence 367777665544443333
No 40
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases. Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0003824 catalytic activity, 0008199 ferric iron binding, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 2BUV_A 2BUX_A 2BUU_A 2BUR_A 1EO9_A 2BUZ_A 2BV0_A 1EO2_A 1EOC_A 1EOA_A ....
Probab=62.67 E-value=5.1 Score=32.07 Aligned_cols=21 Identities=14% Similarity=-0.067 Sum_probs=18.0
Q ss_pred CccceEEccCCCceeeEEEEE
Q psy17399 92 GVKGGMQDFNYVYSNCFEVTF 112 (152)
Q Consensus 92 GIkG~V~D~~g~pI~~A~ItV 112 (152)
=|+|.|.|.+|.||++|.|.|
T Consensus 31 ~l~G~V~D~~g~Pv~~A~vei 51 (183)
T PF00775_consen 31 VLHGRVIDTDGKPVPGALVEI 51 (183)
T ss_dssp EEEEEEEETTSSB-TTEEEEE
T ss_pred EEEEEEECCCCCCCCCcEEEE
Confidence 389999999999999998877
No 41
>cd06237 M14_Nna1_like_3 A bacterial subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP),-like proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins (such as alpha-tubulin in eukaryotes) to remove a C-terminal tyrosine. Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain.
Probab=62.33 E-value=2.9 Score=34.76 Aligned_cols=26 Identities=12% Similarity=0.124 Sum_probs=23.7
Q ss_pred eeecCCCcccceeeecceeEEEEeec
Q psy17399 36 WYDVKGGMQDFNYVYSNCFEVTFELS 61 (152)
Q Consensus 36 WY~~~GgmqD~nY~~~nc~eiTlEls 61 (152)
=|+..||..||-|-..+...+|+||+
T Consensus 199 ~~~~~g~~~Dw~~~~~~~~~~T~E~g 224 (244)
T cd06237 199 SSPDRGVSKQYFADEHGAHAITYEVG 224 (244)
T ss_pred cccCCCcHHHHHHHhCCCcEEEEecC
Confidence 35788999999999999999999997
No 42
>cd06229 M14_Endopeptidase_I Peptidase M14-like domain of Gamma-D-glutamyl-L-diamino acid endopeptidase 1 (also known as Gamma-D-glutamyl-meso-diaminopimelate peptidase I, and Endopeptidase I (ENP1); EC 3.4.19.11). ENP1 is a member of the M14 family of metallocarboxypeptidases (MCPs). However it has an exceptional type of activity of hydrolyzing the gamma-D-Glu-(L)meso-diaminopimelic acid (gamma-D-Glu-Dap) bond of L-Ala-gamma-D-Glu-(L)meso-diaminopimelic acid and L-Ala-gamma-D-Glu-(L)meso-diaminopimelic acid(L)-D-Ala peptides. ENP1has a different substrate specificity and cellular role than MpaA (MpaA does not belong to this group). ENP1 hydrolyzes the gamma-D-Glu-Dap bond of MurNAc-tripeptide and MurNAc-tetrapeptide, as well as the amide bond of free tripeptide and tetrapeptide . ENP1 is active on spore cortex peptidoglycan, and is produced at stage IV of sporulation in forespore and spore integuments.
Probab=61.90 E-value=3.4 Score=34.18 Aligned_cols=81 Identities=17% Similarity=0.198 Sum_probs=49.7
Q ss_pred ecceeEEEEeeccCC----CCCCCCchHHHHhcHHHHHHHHHHhcc---C------ccceEEccCCCceeeEEEEEEccc
Q psy17399 50 YSNCFEVTFELSCCK----FPRASQMPKFWKDNKEALLAFMEQTHL---G------VKGGMQDFNYVYSNCFEVTFELSC 116 (152)
Q Consensus 50 ~~nc~eiTlElsc~K----~P~~~~L~~~W~~N~~all~~~~~vh~---G------IkG~V~D~~g~pI~~A~ItVe~~~ 116 (152)
...-+.+.|=++..- ||...+.+ ..-.+|-+.+++++- | ..|...|+-+.-.....+|+|++.
T Consensus 159 ~~~~~~~~i~~Hs~g~~i~~~~~~~~~----~~~~~~~~~~~~~~gy~~~~~~~~~~~G~~~Dw~~~~~gi~s~t~El~~ 234 (255)
T cd06229 159 RENRFRAVLAYHSQGEEIYWGYGGLEP----PESQKMAELLAEVSGYELVDSESKRSYGGYKDWFIQKFRRPGFTIEIGR 234 (255)
T ss_pred HhCCCeEEEEecCCCCeEEecCCCCCc----hHHHHHHHHHhhccCCccccccccCCCCCHHHHHHhhcCCeEEEEEeCC
Confidence 333455555555433 66665555 333556666666531 1 245566654433233478899888
Q ss_pred CCCC-CCCCChHHHHhCHH
Q psy17399 117 CKFP-RASQMPKFWKDNKE 134 (152)
Q Consensus 117 ~kfP-~ts~lg~yWr~n~~ 134 (152)
..-| +.++....|++||.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~ 253 (255)
T cd06229 235 GTNPLPLSQFKTIYKENKG 253 (255)
T ss_pred CCCCCChHHhHHHHHhhcC
Confidence 6666 88999999999985
No 43
>cd06227 Peptidase_M14-like_2 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=61.72 E-value=5.5 Score=33.66 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=28.6
Q ss_pred CCCCCccccceeeecCCCcccceeeecce-eEEEEeec
Q psy17399 25 HFPNGITNGAYWYDVKGGMQDFNYVYSNC-FEVTFELS 61 (152)
Q Consensus 25 ~F~~GItNGA~WY~~~GgmqD~nY~~~nc-~eiTlEls 61 (152)
.|.-|..-..-.|+..|+..||.|-..++ +-.|+||.
T Consensus 220 ~y~~G~~~~~~~Y~a~G~s~Dway~~~gip~s~t~EL~ 257 (272)
T cd06227 220 RCQVGSAGKLVGYLAHGTSMDYMYDVLKVPYSFTFEIY 257 (272)
T ss_pred CCceecCccceeecCCCCHHHHHhhcCCCcEEEEEEcc
Confidence 34445544445799999999999976665 89999998
No 44
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=59.97 E-value=5.7 Score=33.11 Aligned_cols=24 Identities=17% Similarity=-0.056 Sum_probs=20.9
Q ss_pred hccCccceEEccCCCceeeEEEEE
Q psy17399 89 THLGVKGGMQDFNYVYSNCFEVTF 112 (152)
Q Consensus 89 vh~GIkG~V~D~~g~pI~~A~ItV 112 (152)
.++-|+|.|.|.+|.|+++|.|-|
T Consensus 71 e~i~l~G~VlD~~G~Pv~~A~VEi 94 (226)
T COG3485 71 ERILLEGRVLDGNGRPVPDALVEI 94 (226)
T ss_pred ceEEEEEEEECCCCCCCCCCEEEE
Confidence 356799999999999999998776
No 45
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=58.85 E-value=6.8 Score=30.27 Aligned_cols=24 Identities=13% Similarity=0.025 Sum_probs=21.5
Q ss_pred ccceEEccCCCceeeEEEEEEccc
Q psy17399 93 VKGGMQDFNYVYSNCFEVTFELSC 116 (152)
Q Consensus 93 IkG~V~D~~g~pI~~A~ItVe~~~ 116 (152)
|+|...|..|.|++++.|++.-+.
T Consensus 5 ISGvL~dg~G~pv~g~~I~L~A~~ 28 (134)
T PF08400_consen 5 ISGVLKDGAGKPVPGCTITLKARR 28 (134)
T ss_pred EEEEEeCCCCCcCCCCEEEEEEcc
Confidence 789999999999999999987654
No 46
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=57.82 E-value=6.5 Score=31.85 Aligned_cols=20 Identities=10% Similarity=-0.081 Sum_probs=18.5
Q ss_pred ccceEEccCCCceeeEEEEE
Q psy17399 93 VKGGMQDFNYVYSNCFEVTF 112 (152)
Q Consensus 93 IkG~V~D~~g~pI~~A~ItV 112 (152)
|+|.|.|.+|.||++|.|-|
T Consensus 42 l~G~V~D~~g~Pv~~A~Vei 61 (193)
T TIGR02423 42 LEGRVLDGDGHPVPDALIEI 61 (193)
T ss_pred EEEEEECCCCCCCCCCEEEE
Confidence 79999999999999998876
No 47
>cd03872 M14_CPA6 Carboxypeptidase (CP) A6 (CPA6, also known as CPAH; EC 3.4.17.1), belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPA6 prefers large hydrophobic C-terminal amino acids as well as histidine, while peptides with a penultimate glycine or proline are very poorly cleaved. Several neuropeptides are processed by CPA6, including Met- and Leu-enkephalin, angiotensin I, and neurotensin. CPA6 converts enkephalin and neurotensin into forms known to be inactive toward their receptors, but converts inactive angiotensin I into the biologically active angiotensin II. Thus, CPA6 plays a possible role in the regulation of neuropeptides in the extracellular environment within the olfactory bulb where it is highly expresse
Probab=57.24 E-value=10 Score=32.55 Aligned_cols=55 Identities=16% Similarity=0.175 Sum_probs=45.4
Q ss_pred eeeecCCCcccceeeecceeEEEEeeccCC---C-CCCCCchHHHHhcHHHHHHHHHHh
Q psy17399 35 YWYDVKGGMQDFNYVYSNCFEVTFELSCCK---F-PRASQMPKFWKDNKEALLAFMEQT 89 (152)
Q Consensus 35 ~WY~~~GgmqD~nY~~~nc~eiTlElsc~K---~-P~~~~L~~~W~~N~~all~~~~~v 89 (152)
..|..+|+--||.|-..--+..|+||.-.- | ||+++....-++.-.++..+++++
T Consensus 238 ~lY~a~G~s~Dw~y~~~i~~s~t~EL~~~g~~gF~lp~~~I~p~~~E~~~~i~~~~~~~ 296 (300)
T cd03872 238 TLYVSSGSSMDWAYKNGIPYAFAFELRDTGYYGFLLPEGLIKPTCTETMLAVKNITMHL 296 (300)
T ss_pred ceecCCCCHHHHhhcCCCcEEEEEEeCCCCCCCCcCCHHHCCcccHHHHHHHHHHHHHH
Confidence 579999999999996555589999997532 3 788888888899999998888876
No 48
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=57.07 E-value=7.1 Score=30.56 Aligned_cols=21 Identities=14% Similarity=-0.143 Sum_probs=18.6
Q ss_pred CccceEEccCCCceeeEEEEE
Q psy17399 92 GVKGGMQDFNYVYSNCFEVTF 112 (152)
Q Consensus 92 GIkG~V~D~~g~pI~~A~ItV 112 (152)
=|+|.|+|.+|.||++|.|-|
T Consensus 17 ~l~g~V~D~~g~Pv~~A~vei 37 (158)
T cd03459 17 ILEGRVLDGDGRPVPDALVEI 37 (158)
T ss_pred EEEEEEECCCCCCCCCCEEEE
Confidence 378999999999999988776
No 49
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=57.06 E-value=7.5 Score=29.65 Aligned_cols=22 Identities=14% Similarity=-0.138 Sum_probs=19.6
Q ss_pred CccceEEccCCCceeeEEEEEE
Q psy17399 92 GVKGGMQDFNYVYSNCFEVTFE 113 (152)
Q Consensus 92 GIkG~V~D~~g~pI~~A~ItVe 113 (152)
=|+|.|+|.+|.|++.|.|.|-
T Consensus 13 ~l~G~V~D~~g~pv~~A~VeiW 34 (146)
T cd00421 13 TLTGTVLDGDGCPVPDALVEIW 34 (146)
T ss_pred EEEEEEECCCCCCCCCcEEEEE
Confidence 4789999999999999988883
No 50
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=54.71 E-value=8 Score=32.58 Aligned_cols=21 Identities=10% Similarity=0.101 Sum_probs=19.1
Q ss_pred CccceEEccCCCceeeEEEEE
Q psy17399 92 GVKGGMQDFNYVYSNCFEVTF 112 (152)
Q Consensus 92 GIkG~V~D~~g~pI~~A~ItV 112 (152)
=|+|.|+|.+|.||++|.|-|
T Consensus 100 ~v~G~V~D~~G~Pv~~A~Vei 120 (246)
T TIGR02465 100 LIRGTVRDLSGTPVAGAVIDV 120 (246)
T ss_pred EEEEEEEcCCCCCcCCcEEEE
Confidence 489999999999999998877
No 51
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=53.84 E-value=8.3 Score=31.95 Aligned_cols=20 Identities=20% Similarity=-0.012 Sum_probs=18.1
Q ss_pred ccceEEccCCCceeeEEEEE
Q psy17399 93 VKGGMQDFNYVYSNCFEVTF 112 (152)
Q Consensus 93 IkG~V~D~~g~pI~~A~ItV 112 (152)
|+|.|.|.+|.||++|.|-|
T Consensus 68 l~G~V~D~~G~PV~~A~VEI 87 (220)
T cd03464 68 VHGRVLDEDGRPVPNTLVEI 87 (220)
T ss_pred EEEEEECCCCCCCCCCEEEE
Confidence 78999999999999998776
No 52
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=53.48 E-value=8.5 Score=31.87 Aligned_cols=21 Identities=19% Similarity=-0.097 Sum_probs=18.3
Q ss_pred CccceEEccCCCceeeEEEEE
Q psy17399 92 GVKGGMQDFNYVYSNCFEVTF 112 (152)
Q Consensus 92 GIkG~V~D~~g~pI~~A~ItV 112 (152)
=|+|.|.|.+|.||++|.|-|
T Consensus 62 ~l~G~V~D~~g~PV~~A~VEI 82 (220)
T TIGR02422 62 IVHGRVLDEDGRPVPNTLVEV 82 (220)
T ss_pred EEEEEEECCCCCCCCCCEEEE
Confidence 378999999999999988776
No 53
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=53.22 E-value=8.6 Score=30.94 Aligned_cols=20 Identities=10% Similarity=-0.056 Sum_probs=18.4
Q ss_pred ccceEEccCCCceeeEEEEE
Q psy17399 93 VKGGMQDFNYVYSNCFEVTF 112 (152)
Q Consensus 93 IkG~V~D~~g~pI~~A~ItV 112 (152)
|+|.|.|.+|.||++|.|-|
T Consensus 39 l~G~V~D~~g~Pi~gA~Vei 58 (185)
T cd03463 39 LEGRVYDGDGAPVPDAMLEI 58 (185)
T ss_pred EEEEEECCCCCCCCCCEEEE
Confidence 79999999999999998877
No 54
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=50.63 E-value=12 Score=26.96 Aligned_cols=35 Identities=17% Similarity=0.039 Sum_probs=28.5
Q ss_pred ccceEEccCCCceeeEEEEEEcccCCC---CCCCCChHH
Q psy17399 93 VKGGMQDFNYVYSNCFEVTFELSCCKF---PRASQMPKF 128 (152)
Q Consensus 93 IkG~V~D~~g~pI~~A~ItVe~~~~kf---P~ts~lg~y 128 (152)
|.|.|+ .+|.|++.|-+.+-.+...| ..++..|+|
T Consensus 10 ItG~V~-~~G~Pv~gAyVRLLD~sgEFtaEvvts~~G~F 47 (85)
T PF07210_consen 10 ITGRVT-RDGEPVGGAYVRLLDSSGEFTAEVVTSATGDF 47 (85)
T ss_pred EEEEEe-cCCcCCCCeEEEEEcCCCCeEEEEEecCCccE
Confidence 789998 89999999999999999888 245555554
No 55
>cd06905 Peptidase_M14-like_8 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=49.93 E-value=9.1 Score=33.77 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=23.0
Q ss_pred ecCCCcccceeeecceeEEEEeec
Q psy17399 38 DVKGGMQDFNYVYSNCFEVTFELS 61 (152)
Q Consensus 38 ~~~GgmqD~nY~~~nc~eiTlEls 61 (152)
++.|+..||.|-..+++..|+||.
T Consensus 314 ~~~G~~~Dw~y~~~gi~s~t~EL~ 337 (360)
T cd06905 314 VTYGAFDDWAYDHLGIFAFTVELW 337 (360)
T ss_pred cccCChhhhhhhcCCeEEEEEEcC
Confidence 899999999999999999999998
No 56
>cd03862 Peptidase_M14-like_7 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=48.18 E-value=10 Score=32.16 Aligned_cols=30 Identities=20% Similarity=0.347 Sum_probs=23.8
Q ss_pred cceeeecCCCcccceeeecce-------eEEEEeecc
Q psy17399 33 GAYWYDVKGGMQDFNYVYSNC-------FEVTFELSC 62 (152)
Q Consensus 33 GA~WY~~~GgmqD~nY~~~nc-------~eiTlElsc 62 (152)
.+..|...|+.-||-|-..+- +-+||||+=
T Consensus 204 ~s~~Y~a~G~~~D~~y~~~~~~~~~~~~l~~TlE~Gt 240 (273)
T cd03862 204 QSRHYLTHGDLWDYLYDQHQKQQPNGRFLPLTLEMGS 240 (273)
T ss_pred cceeEECCCCHHHHHHhhcCcccccccceeEEEEeec
Confidence 445699999999999975433 579999994
No 57
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=48.17 E-value=12 Score=31.81 Aligned_cols=20 Identities=20% Similarity=0.064 Sum_probs=18.1
Q ss_pred ccceEEccCCCceeeEEEEE
Q psy17399 93 VKGGMQDFNYVYSNCFEVTF 112 (152)
Q Consensus 93 IkG~V~D~~g~pI~~A~ItV 112 (152)
|+|.|+|.+|.||++|.|-|
T Consensus 107 l~G~V~D~~G~Pv~~A~Vei 126 (256)
T cd03458 107 VHGTVTDTDGKPLAGATVDV 126 (256)
T ss_pred EEEEEEcCCCCCCCCcEEEE
Confidence 78999999999999988776
No 58
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups. This reaction is part of the modified ortho-cleavage pathway which is a central oxidative bacterial pathway that channels chlorocatechols, derived from the degradation of chlorinated benzoic acids, phenoxyacetic acids, phenols, benzenes, and other aromatics into the energy-generating tricarboxylic acid pathway.
Probab=47.46 E-value=12 Score=31.57 Aligned_cols=21 Identities=10% Similarity=0.036 Sum_probs=18.9
Q ss_pred CccceEEccCCCceeeEEEEE
Q psy17399 92 GVKGGMQDFNYVYSNCFEVTF 112 (152)
Q Consensus 92 GIkG~V~D~~g~pI~~A~ItV 112 (152)
=|+|.|+|.+|.||++|.|-|
T Consensus 101 ~l~G~V~D~~G~Pv~~A~Vei 121 (247)
T cd03462 101 LFRGTVKDLAGAPVAGAVIDV 121 (247)
T ss_pred EEEEEEEcCCCCCcCCcEEEE
Confidence 379999999999999998877
No 59
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=46.30 E-value=13 Score=32.07 Aligned_cols=20 Identities=15% Similarity=0.094 Sum_probs=18.4
Q ss_pred ccceEEccCCCceeeEEEEE
Q psy17399 93 VKGGMQDFNYVYSNCFEVTF 112 (152)
Q Consensus 93 IkG~V~D~~g~pI~~A~ItV 112 (152)
|+|.|.|.+|.||++|.|-|
T Consensus 131 v~G~V~D~~G~PI~gA~VeI 150 (285)
T TIGR02439 131 LHGQVTDADGKPIAGAKVEL 150 (285)
T ss_pred EEEEEECCCCCCcCCcEEEE
Confidence 79999999999999998876
No 60
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=44.70 E-value=14 Score=31.72 Aligned_cols=20 Identities=15% Similarity=0.062 Sum_probs=18.4
Q ss_pred ccceEEccCCCceeeEEEEE
Q psy17399 93 VKGGMQDFNYVYSNCFEVTF 112 (152)
Q Consensus 93 IkG~V~D~~g~pI~~A~ItV 112 (152)
|+|.|.|.+|.||++|.|-|
T Consensus 127 l~G~V~D~~G~PI~~A~Vei 146 (282)
T cd03460 127 MHGTVTDTDGKPVPGAKVEV 146 (282)
T ss_pred EEEEEECCCCCCcCCcEEEE
Confidence 79999999999999998876
No 61
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=44.61 E-value=14 Score=31.81 Aligned_cols=21 Identities=14% Similarity=0.044 Sum_probs=19.2
Q ss_pred CccceEEccCCCceeeEEEEE
Q psy17399 92 GVKGGMQDFNYVYSNCFEVTF 112 (152)
Q Consensus 92 GIkG~V~D~~g~pI~~A~ItV 112 (152)
=|.|.|+|.+|.||++|.|-|
T Consensus 134 ~v~G~V~D~~G~Pv~gA~Vdi 154 (281)
T TIGR02438 134 VFSGQVTDLDGNGLAGAKVEL 154 (281)
T ss_pred EEEEEEEcCCCCCcCCCEEEE
Confidence 379999999999999999888
No 62
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=42.52 E-value=16 Score=31.37 Aligned_cols=20 Identities=20% Similarity=0.056 Sum_probs=18.3
Q ss_pred ccceEEccCCCceeeEEEEE
Q psy17399 93 VKGGMQDFNYVYSNCFEVTF 112 (152)
Q Consensus 93 IkG~V~D~~g~pI~~A~ItV 112 (152)
|+|.|+|.+|.||++|.|-|
T Consensus 123 v~G~V~D~~G~Pv~gA~Vei 142 (277)
T cd03461 123 VHGRVTDTDGKPLPGATVDV 142 (277)
T ss_pred EEEEEEcCCCCCcCCcEEEE
Confidence 79999999999999988776
No 63
>PRK10602 murein peptide amidase A; Provisional
Probab=42.36 E-value=10 Score=31.53 Aligned_cols=40 Identities=18% Similarity=0.149 Sum_probs=32.0
Q ss_pred eeeecCCCcccceeeecceeEEEEeeccCCCCCCCCchHHHHh
Q psy17399 35 YWYDVKGGMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFWKD 77 (152)
Q Consensus 35 ~WY~~~GgmqD~nY~~~nc~eiTlElsc~K~P~~~~L~~~W~~ 77 (152)
..|+-.|++-||-+ ..++--||+|+.+ .|...+...+|.+
T Consensus 187 ~~y~~~Gs~~~~a~-~~giP~it~El~~--~~~~~~v~~~~~~ 226 (237)
T PRK10602 187 VGYETPGSFGSWCA-DLNLHCITAELPP--ISADEASEKYLFA 226 (237)
T ss_pred cCCCCCCcHHHHHH-HcCCcEEEEecCC--cCcHHHHHHHHHH
Confidence 67777899999988 5677789999997 7777777777664
No 64
>PF14302 DUF4377: Domain of unknown function (DUF4377)
Probab=40.38 E-value=48 Score=22.93 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=32.8
Q ss_pred cceeeecCCCcccceeeecceeEEEEeeccCCCCCCCCc
Q psy17399 33 GAYWYDVKGGMQDFNYVYSNCFEVTFELSCCKFPRASQM 71 (152)
Q Consensus 33 GA~WY~~~GgmqD~nY~~~nc~eiTlElsc~K~P~~~~L 71 (152)
..+|..+.|+.++|.|--..-..|.|.----+-||++.-
T Consensus 29 ~~~W~~fy~~IeGF~yE~Gy~Y~L~Vk~~~~~nppaD~s 67 (80)
T PF14302_consen 29 NDDWELFYGSIEGFEYEPGYEYVLRVKRTPVANPPADAS 67 (80)
T ss_pred CCCcEECcCcccCcCcCCCcEEEEEEEEEECCCCCCCCC
Confidence 349999999999999999888888888877778887653
No 65
>COG5266 CbiK ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=38.26 E-value=30 Score=29.63 Aligned_cols=20 Identities=20% Similarity=0.036 Sum_probs=18.5
Q ss_pred ccceEEccCCCceeeEEEEEE
Q psy17399 93 VKGGMQDFNYVYSNCFEVTFE 113 (152)
Q Consensus 93 IkG~V~D~~g~pI~~A~ItVe 113 (152)
++|.|.|. |.|+++|+|.++
T Consensus 174 f~~~vl~~-GkPv~nA~V~v~ 193 (264)
T COG5266 174 FRGKVLDN-GKPVPNATVEVE 193 (264)
T ss_pred EEEEEEEC-CccCCCcEEEEE
Confidence 78999985 999999999999
No 66
>cd03860 M14_CP_A-B_like The Peptidase M14 Carboxypeptidase (CP) A/B subfamily is one of two main M14 CP subfamilies defined by sequence and structural homology, the other being the N/E subfamily. CPs hydrolyze single, C-terminal amino acids from polypeptide chains. They have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. There are nine members in the A/B family: CPA1, CPA2, CPA3, CPA4, CPA5, CPA6, CPB, CPO and CPU. CPA1, CPA2 and CPB are produced by the
Probab=36.46 E-value=33 Score=28.85 Aligned_cols=50 Identities=24% Similarity=0.325 Sum_probs=39.1
Q ss_pred ccceEEccCCCcee-eEEEEEEcccC---CC-CCCCCChHHHHhCHHHHHHHHHH
Q psy17399 93 VKGGMQDFNYVYSN-CFEVTFELSCC---KF-PRASQMPKFWKDNKEALLAFMEQ 142 (152)
Q Consensus 93 IkG~V~D~~g~pI~-~A~ItVe~~~~---kf-P~ts~lg~yWr~n~~all~~~~~ 142 (152)
..|...|+.+.... ....|+|+++. .| |++++.....++.-.+|+.+.++
T Consensus 239 ~~G~~~Dw~y~~~~~~~~~t~El~~~~~~gf~~p~~~i~~~~~e~~~~~~~~~~~ 293 (294)
T cd03860 239 ASGGSDDWAYGVAGIPYSYTLELRDTGRYGFLLPASQIIPTAEETFAGIKAMADE 293 (294)
T ss_pred CCCchhhhhhccCCCcEEEEEEecCCCCCCCcCChHHchhHHHHHHHHHHHHHhh
Confidence 58888897765543 47999999885 34 68888999999988888888765
No 67
>cd06228 Peptidase_M14-like_3 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=34.96 E-value=20 Score=31.46 Aligned_cols=29 Identities=21% Similarity=0.394 Sum_probs=23.6
Q ss_pred ceeeecCCCcccceeee-------cceeEEEEeecc
Q psy17399 34 AYWYDVKGGMQDFNYVY-------SNCFEVTFELSC 62 (152)
Q Consensus 34 A~WY~~~GgmqD~nY~~-------~nc~eiTlElsc 62 (152)
+.-|+.+|+--||.|-. .--+..|+||+.
T Consensus 269 ~~lY~~sG~s~D~ay~~~~~~~~~~~~~s~t~El~~ 304 (332)
T cd06228 269 VGLYPTSGASDDYAFSRHFADAVKRKVFSYTIEFGE 304 (332)
T ss_pred ccccCCCCChhhhhhhccccccccCceEEEEEEeCC
Confidence 34799999999999953 346899999974
No 68
>PF13220 DUF4028: Protein of unknown function (DUF4028)
Probab=34.53 E-value=11 Score=25.21 Aligned_cols=19 Identities=32% Similarity=0.695 Sum_probs=15.9
Q ss_pred CCCCCCchHHHHhcHHHHH
Q psy17399 65 FPRASQMPKFWKDNKEALL 83 (152)
Q Consensus 65 ~P~~~~L~~~W~~N~~all 83 (152)
-|.-.+..+-|.+||+|.+
T Consensus 41 rptfkevekdwkenresf~ 59 (65)
T PF13220_consen 41 RPTFKEVEKDWKENRESFM 59 (65)
T ss_pred CCcHHHHHHHHHHhhhhhc
Confidence 4777888999999999864
No 69
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=31.35 E-value=38 Score=23.32 Aligned_cols=25 Identities=24% Similarity=0.102 Sum_probs=20.7
Q ss_pred ccceEEccCCCceeeEEEEEEcccC
Q psy17399 93 VKGGMQDFNYVYSNCFEVTFELSCC 117 (152)
Q Consensus 93 IkG~V~D~~g~pI~~A~ItVe~~~~ 117 (152)
|.=.|.|.+|+|++...|+++....
T Consensus 22 i~v~v~D~~Gnpv~~~~V~f~~~~~ 46 (92)
T smart00634 22 LTATVTDANGNPVAGQEVTFTTPSG 46 (92)
T ss_pred EEEEEECCCCCCcCCCEEEEEECCC
Confidence 5567899999999999999887653
No 70
>cd03871 M14_CPB Peptidase M14 Carboxypeptidase B (CPB) belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Carboxypeptidase B (CPB) enzymes only cleave the basic residues lysine or arginine. A/B subfamily enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The procarboxypeptidase B (PCPB) is produced by the exocrine pancreas and stored as stable zymogen in the pancreatic granules until secretion into the digestive tract occurs. PCPB has been reported to be a good serum marker for the diagnosis of acute pancreatitis and graft rejection in pancreas transplant recipients.
Probab=29.23 E-value=36 Score=29.18 Aligned_cols=51 Identities=24% Similarity=0.263 Sum_probs=38.9
Q ss_pred ccceEEccCCCceeeEEEEEEcccC---CCC-CCCCChHHHHhCHHHHHHHHHHh
Q psy17399 93 VKGGMQDFNYVYSNCFEVTFELSCC---KFP-RASQMPKFWKDNKEALLAFMEQT 143 (152)
Q Consensus 93 IkG~V~D~~g~pI~~A~ItVe~~~~---kfP-~ts~lg~yWr~n~~all~~~~~~ 143 (152)
..|...|+.+..-.+...|+|+++. .|+ ++++....+++.-.++..+.+++
T Consensus 245 a~G~s~Dw~y~~~~~~s~t~El~~~g~~gf~lp~~~I~~~~~E~~~~i~~~~~~~ 299 (300)
T cd03871 245 AAGGSDDWAYDQGIKYSFTFELRDKGRYGFLLPESQIKPTCEETMLAVKYIANYV 299 (300)
T ss_pred CCCCHHHHHhcCCCcEEEEEEeCCCCCCCCCCCHHHCccccHHHHHHHHHHHHhh
Confidence 4678888776555578999999874 464 88889999998888887777654
No 71
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=26.08 E-value=86 Score=26.85 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=25.2
Q ss_pred HHhcHHHHHHHHHHhc-cCccceEE-ccCCCcee
Q psy17399 75 WKDNKEALLAFMEQTH-LGVKGGMQ-DFNYVYSN 106 (152)
Q Consensus 75 W~~N~~all~~~~~vh-~GIkG~V~-D~~g~pI~ 106 (152)
|.. ..+|+++|.++. .|+.|.|+ |.+|.+++
T Consensus 311 w~~-G~~i~~~l~~~~~~GlTG~i~Fd~~G~r~~ 343 (370)
T cd06389 311 WGQ-GVEIERALKQVQVEGLTGNIKFDQNGKRIN 343 (370)
T ss_pred CCC-cHHHHHHHHhcccCccccceEeCCCCcccc
Confidence 764 578999999975 59999887 67888876
No 72
>cd06248 M14_CPA_CPB_like Peptidase M14 Carboxypeptidase A/B-like subfamily: This is one of two main M14 carboxypeptidase subfamilies, defined by sequence and structural homology, the other being N/E. Carboxypeptidases (CPs) hydrolyze single, C-terminal amino acids from polypeptide chains. They have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Majority of the proteins in this subfamily have not been characterized as yet. The A/B enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; the proenzymes are called procarboxypeptidases. These enzymes exhibit distinct substrate specificity pattern; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. There are nine members in the A/B family: CPA1, CPA2, CPA3, CPA4, CPA5,
Probab=26.02 E-value=62 Score=27.56 Aligned_cols=50 Identities=16% Similarity=0.200 Sum_probs=37.0
Q ss_pred ccceEEccCCCcee-eEEEEEEcccC---CC-CCCCCChHHHHhCHHHHHHHHHH
Q psy17399 93 VKGGMQDFNYVYSN-CFEVTFELSCC---KF-PRASQMPKFWKDNKEALLAFMEQ 142 (152)
Q Consensus 93 IkG~V~D~~g~pI~-~A~ItVe~~~~---kf-P~ts~lg~yWr~n~~all~~~~~ 142 (152)
..|...|+.+.... +...|||+++. .| +++++...--++.-.++..+++.
T Consensus 249 ~~G~~~D~~y~~~gi~~~~t~El~~~~~~gf~~p~~~i~p~~~e~~~~~~~~~~~ 303 (304)
T cd06248 249 TTGSSVDWVYHVAGAAWSYQLELRDTGTYGFVLPAKQIIPTGEETWAGIKYLLKF 303 (304)
T ss_pred CCCCcchhhhccCCCcEEEEEEeCCCCCCCCCCCHHHCcchhHHHHHHHHHHHhh
Confidence 57888898876544 88999998763 34 47777777778877777777654
No 73
>PF05410 Peptidase_C31: Porcine arterivirus-type cysteine proteinase alpha; InterPro: IPR008741 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases corresponds to MEROPS peptidase family C31 (clan CA). Type example is porcine respiratory and reproductive syndrome arterivirus-type cysteine proteinase alpha (lactate-dehydrogenase-elevating virus), which is involved in viral polyprotein processing [].; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides; PDB: 3IFU_A.
Probab=24.15 E-value=37 Score=24.79 Aligned_cols=33 Identities=30% Similarity=0.682 Sum_probs=11.4
Q ss_pred ccceeeecCCCcccceeeecceeEEEEeeccCCCCCCC
Q psy17399 32 NGAYWYDVKGGMQDFNYVYSNCFEVTFELSCCKFPRAS 69 (152)
Q Consensus 32 NGA~WY~~~GgmqD~nY~~~nc~eiTlElsc~K~P~~~ 69 (152)
.|-.||||.|-..-- =+..| .+-+|-.-||-+.
T Consensus 68 rgcrwypitgpvpg~-~lyan----s~hvsd~~fpgat 100 (105)
T PF05410_consen 68 RGCRWYPITGPVPGM-GLYAN----SMHVSDQPFPGAT 100 (105)
T ss_dssp TT-EEEE--S---S---EEE-----SS-EESS--TT--
T ss_pred cCCceeeccCCCCCc-eeeec----ceeecCCCCCCce
Confidence 477999999843321 11222 3445666677653
No 74
>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli. These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].
Probab=22.06 E-value=70 Score=20.38 Aligned_cols=21 Identities=14% Similarity=-0.126 Sum_probs=17.4
Q ss_pred eEEccCCCceeeEEEEEEccc
Q psy17399 96 GMQDFNYVYSNCFEVTFELSC 116 (152)
Q Consensus 96 ~V~D~~g~pI~~A~ItVe~~~ 116 (152)
.+.|.+|+|++++.++|.-..
T Consensus 20 t~kda~G~pv~n~~f~l~r~~ 40 (47)
T PF05688_consen 20 TVKDANGNPVPNAPFTLTRGD 40 (47)
T ss_pred EEECCCCCCcCCceEEEEecC
Confidence 467889999999999887665
No 75
>COG4405 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.51 E-value=1.3e+02 Score=23.46 Aligned_cols=53 Identities=11% Similarity=-0.012 Sum_probs=27.1
Q ss_pred CccceEEccCCCceeeEEEEEEcccCCCCCCCCChHHHHhCHHHHHHHHHHhhc
Q psy17399 92 GVKGGMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFWKDNKEALLAFMEQTHL 145 (152)
Q Consensus 92 GIkG~V~D~~g~pI~~A~ItVe~~~~kfP~ts~lg~yWr~n~~all~~~~~~~~ 145 (152)
|=.=.|.|.+|.|. |+.-+++..-..|-.-+..--+=..|-+.=|+|.+++|+
T Consensus 60 G~~~iv~d~~g~a~-C~I~~t~V~~~~F~~v~~~lA~~EGEGD~sL~ywr~~Hr 112 (140)
T COG4405 60 GEFVIVLDGRGQAR-CVIRLTKVFLTTFNEVDAELARKEGEGDRSLEYWRKVHR 112 (140)
T ss_pred CceEEEEcCCCCEE-EEEEEEEEEEEecCCcCHHHHhhcCCCchhHHHHHHHHH
Confidence 44447888888887 655555555555532222222233333333444444443
No 76
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=21.49 E-value=67 Score=24.59 Aligned_cols=26 Identities=12% Similarity=-0.132 Sum_probs=22.3
Q ss_pred cCccceEEc-cCCCceeeEEEEEEccc
Q psy17399 91 LGVKGGMQD-FNYVYSNCFEVTFELSC 116 (152)
Q Consensus 91 ~GIkG~V~D-~~g~pI~~A~ItVe~~~ 116 (152)
..|+|-|.| .+|.|.++..|+++...
T Consensus 27 ~~Is~HVLDt~~G~PA~gV~V~L~~~~ 53 (137)
T PRK15036 27 NILSVHILNQQTGKPAADVTVTLEKKA 53 (137)
T ss_pred CCeEEEEEeCCCCcCCCCCEEEEEEcc
Confidence 369999999 57999999999998653
No 77
>cd06246 M14_CPB2 Peptidase M14 Carboxypeptidase (CP) B2 (CPB2, also known as plasma carboxypeptidase B, carboxypeptidase U, and CPU), belongs to the carboxpeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPB2 enzyme displays B-like activity; it only cleaves the basic residues lysine or arginine. It is produced and secreted by the liver as the inactive precursor, procarboxypeptidase U or PCPB2, commonly referred to as thrombin-activatable fibrinolysis inhibitor (TAFI). It circulates in plasma as a zymogen bound to plasminogen, and the active enzyme, TAFIa, inhibits fibrinolysis. It is highly regulated, increased TAFI concentrations are thought to increase the risk of thrombosis and coronary artery disease by reducing fibrinolytic activity whil
Probab=21.12 E-value=69 Score=27.34 Aligned_cols=51 Identities=22% Similarity=0.257 Sum_probs=35.2
Q ss_pred ccceEEccCCCceeeEEEEEEcccC---CC-CCCCCChHHHHhCHHHHHHHHHHh
Q psy17399 93 VKGGMQDFNYVYSNCFEVTFELSCC---KF-PRASQMPKFWKDNKEALLAFMEQT 143 (152)
Q Consensus 93 IkG~V~D~~g~pI~~A~ItVe~~~~---kf-P~ts~lg~yWr~n~~all~~~~~~ 143 (152)
..|...|+.+..-.....|+|+++. .| +++++...--++.-.++...++++
T Consensus 245 a~G~s~Dw~y~~~~~~s~t~El~~~g~~gF~lp~~~I~p~~~E~~~~~~~~~~~~ 299 (300)
T cd06246 245 APGGSDDWAYDLGIKYSFTFELRDTGTYGFLLPESYIKPTCSEALAAVKKIAWHV 299 (300)
T ss_pred cCCChhhHhhcCCCCEEEEEEecCCCCCCCCCCHHHcccccHHHHHHHHHHHHhh
Confidence 4688888776555578999999886 33 466666666666666666665543
No 78
>PF14168 YjzC: YjzC-like protein
Probab=20.74 E-value=66 Score=21.37 Aligned_cols=25 Identities=32% Similarity=0.495 Sum_probs=20.3
Q ss_pred eeEEEEEEcccCCCCCCCCChHHHHh
Q psy17399 106 NCFEVTFELSCCKFPRASQMPKFWKD 131 (152)
Q Consensus 106 ~~A~ItVe~~~~kfP~ts~lg~yWr~ 131 (152)
+.-.|+|+-.. .||+++..+..|+.
T Consensus 31 ~p~~v~l~~Gd-~fP~T~n~~r~W~k 55 (57)
T PF14168_consen 31 NPKEVKLKKGD-RFPPTSNHGRKWKK 55 (57)
T ss_pred CCcEEEecCCC-cCcCCCCCCCcceE
Confidence 35678888876 99999999999974
No 79
>cd06904 M14_MpaA_like Peptidase M14-like domain of Escherichia coli Murein Peptide Amidase A (MpaA) and related proteins. MpaA is a member of the M14 family of metallocarboxypeptidases (MCPs), however it has an exceptional type of activity, it hydrolyzes the gamma-D-glutamyl-meso-diaminopimelic acid (gamma-D-Glu-Dap) bond in murein peptides. MpaA is specific for cleavage of the gamma-D-Glu-Dap bond of free murein tripeptide; it may also cleave murein tetrapeptide. MpaA has a different substrate specificity and cellular role than endopeptidase I, ENP1 (ENP1 does not belong to this group). MpaA works on free murein peptide in the recycling pathway.
Probab=20.70 E-value=46 Score=25.92 Aligned_cols=39 Identities=23% Similarity=0.198 Sum_probs=27.8
Q ss_pred eecCCCcccceeeecceeEEEEeeccCCCCCCCCchHHHHhcH
Q psy17399 37 YDVKGGMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFWKDNK 79 (152)
Q Consensus 37 Y~~~GgmqD~nY~~~nc~eiTlElsc~K~P~~~~L~~~W~~N~ 79 (152)
|+..|++-||-+...++.-||+|++=.. ++...-|..|.
T Consensus 137 ~~~~G~~~~~a~~~~gip~it~Elg~~~----~~~~~~~~~~~ 175 (178)
T cd06904 137 YPTPGSLGSWAGVERNIPVITIELPYNL----SEYSHIDADLV 175 (178)
T ss_pred ccCCCcHHHHHhhcCCCeEEEEEcCCcc----hhhhhHHHHHh
Confidence 4457899999998778999999999543 24444444443
Done!