RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17399
(152 letters)
>3mn8_A LP15968P; catalytic domain of alpha/beta-hydrolase fold,
C-terminal, A transthyretin-like domain, hydrolase; HET:
NAG GEM; 2.70A {Drosophila melanogaster}
Length = 435
Score = 130 bits (328), Expect = 5e-37
Identities = 56/101 (55%), Positives = 78/101 (77%)
Query: 1 MFKHLAQTYANGNPVMKTGTNCDDHFPNGITNGAYWYDVKGGMQDFNYVYSNCFEVTFEL 60
+FK LA TY++ +P+M+ G NC+D F GITNGA+WY++ GGMQDFNY +SNCFE+T EL
Sbjct: 247 VFKQLAHTYSDNHPIMRKGNNCNDSFSGGITNGAHWYELSGGMQDFNYAFSNCFELTIEL 306
Query: 61 SCCKFPRASQMPKFWKDNKEALLAFMEQTHLGVKGGMQDFN 101
SCCK+P AS +P+ W+ NK +LL + Q H+G+KG + D +
Sbjct: 307 SCCKYPAASTLPQEWQRNKASLLQLLRQAHIGIKGLVTDAS 347
Score = 87.7 bits (217), Expect = 3e-21
Identities = 34/58 (58%), Positives = 45/58 (77%)
Query: 93 VKGGMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFWKDNKEALLAFMEQTHLGVKGR 150
+ GGMQDFNY +SNCFE+T ELSCCK+P AS +P+ W+ NK +LL + Q H+G+KG
Sbjct: 285 LSGGMQDFNYAFSNCFELTIELSCCKYPAASTLPQEWQRNKASLLQLLRQAHIGIKGL 342
>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc
peptidase, transthyretin-like domain, processing,
peptide modification, hydrolase; HET: NAG; 2.10A {Homo
sapiens}
Length = 439
Score = 130 bits (327), Expect = 6e-37
Identities = 54/102 (52%), Positives = 73/102 (71%)
Query: 1 MFKHLAQTYANGNPVMKTGTNCDDHFPNGITNGAYWYDVKGGMQDFNYVYSNCFEVTFEL 60
+F+ LA+ Y+ + M G NC D+FP+GITNGA WY + GMQDFNY+++NCFE+T EL
Sbjct: 231 LFQKLAKVYSYAHGWMFQGWNCGDYFPDGITNGASWYSLSKGMQDFNYLHTNCFEITLEL 290
Query: 61 SCCKFPRASQMPKFWKDNKEALLAFMEQTHLGVKGGMQDFNY 102
SC KFP ++ + W NKEAL+ F+EQ H G+KG + D NY
Sbjct: 291 SCDKFPPEEELQREWLGNKEALIQFLEQVHQGIKGMVLDQNY 332
Score = 85.1 bits (210), Expect = 3e-20
Identities = 32/57 (56%), Positives = 43/57 (75%)
Query: 93 VKGGMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFWKDNKEALLAFMEQTHLGVKG 149
+ GMQDFNY+++NCFE+T ELSC KFP ++ + W NKEAL+ F+EQ H G+KG
Sbjct: 269 LSKGMQDFNYLHTNCFEITLELSCDKFPPEEELQREWLGNKEALIQFLEQVHQGIKG 325
>1uwy_A Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease,
zinc, lipoprotein, hydrolase, structural proteomics in
europe, spine; HET: NAG; 3.0A {Homo sapiens} SCOP:
b.3.2.1 c.56.5.1
Length = 426
Score = 124 bits (313), Expect = 6e-35
Identities = 55/103 (53%), Positives = 78/103 (75%), Gaps = 2/103 (1%)
Query: 1 MFKHLAQTYANGNPVMKTGTNC--DDHFPNGITNGAYWYDVKGGMQDFNYVYSNCFEVTF 58
+F++LA TYA+ NP MK G C +FPNG+TNG WY ++GGMQD+NY+++ CFE+T
Sbjct: 204 VFQYLAHTYASRNPNMKKGDECKNKMNFPNGVTNGYSWYPLQGGMQDYNYIWAQCFEITL 263
Query: 59 ELSCCKFPRASQMPKFWKDNKEALLAFMEQTHLGVKGGMQDFN 101
ELSCCK+PR ++P FW +NK +L+ +++Q HLGVKG + D N
Sbjct: 264 ELSCCKYPREEKLPSFWNNNKASLIEYIKQVHLGVKGQVFDQN 306
Score = 84.3 bits (208), Expect = 4e-20
Identities = 32/58 (55%), Positives = 49/58 (84%)
Query: 93 VKGGMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFWKDNKEALLAFMEQTHLGVKGR 150
++GGMQD+NY+++ CFE+T ELSCCK+PR ++P FW +NK +L+ +++Q HLGVKG+
Sbjct: 244 LQGGMQDYNYIWAQCFEITLELSCCKYPREEKLPSFWNNNKASLIEYIKQVHLGVKGQ 301
>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent
protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta
specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A*
Length = 380
Score = 123 bits (310), Expect = 8e-35
Identities = 49/100 (49%), Positives = 72/100 (72%), Gaps = 5/100 (5%)
Query: 1 MFKHLAQTYANGNPVMKTGTNC-----DDHFPNGITNGAYWYDVKGGMQDFNYVYSNCFE 55
+F+ LA +Y+ N M G+ C ++FP+GITNGA WY+V GGMQD+NY+ +NCFE
Sbjct: 206 VFQQLALSYSKENKKMYQGSPCKDLYPTEYFPHGITNGAQWYNVPGGMQDWNYLNTNCFE 265
Query: 56 VTFELSCCKFPRASQMPKFWKDNKEALLAFMEQTHLGVKG 95
VT EL C K+P+A ++PK+W+ N+ +LL F++Q H G+ G
Sbjct: 266 VTIELGCVKYPKAEELPKYWEQNRRSLLQFIKQVHRGIWG 305
Score = 88.0 bits (218), Expect = 1e-21
Identities = 31/58 (53%), Positives = 45/58 (77%)
Query: 93 VKGGMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFWKDNKEALLAFMEQTHLGVKGR 150
V GGMQD+NY+ +NCFEVT EL C K+P+A ++PK+W+ N+ +LL F++Q H G+ G
Sbjct: 249 VPGGMQDWNYLNTNCFEVTIELGCVKYPKAEELPKYWEQNRRSLLQFIKQVHRGIWGF 306
>3prt_A Carboxypeptidase T; hydrolase; 1.66A {Thermoactinomyces vulgaris}
PDB: 1obr_A 3qnv_A
Length = 323
Score = 68.1 bits (167), Expect = 2e-14
Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 18/93 (19%)
Query: 1 MFKHLAQTYANGNPVMKTGTNCDDHFPNGITNGAYWYDVKGGMQDFNYVYSNCFEVTFEL 60
+FK +A T A N G+ Y GGM D+ Y F TFE+
Sbjct: 232 VFKTMANTMAQTNGYT-------------PQQGSDLYIADGGMDDWAYGQHKIFAFTFEM 278
Query: 61 SCCK-----FPRASQMPKFWKDNKEALLAFMEQ 88
+P + + NKEA+L E+
Sbjct: 279 YPTSYNPGFYPPDEVIGRETSRNKEAVLYVAEK 311
Score = 56.2 bits (136), Expect = 3e-10
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 95 GGMQDFNYVYSNCFEVTFELSCCK-----FPRASQMPKFWKDNKEALLAFMEQ 142
GGM D+ Y F TFE+ +P + + NKEA+L E+
Sbjct: 259 GGMDDWAYGQHKIFAFTFEMYPTSYNPGFYPPDEVIGRETSRNKEAVLYVAEK 311
>3b2y_A Metallopeptidase containing CO-catalytic metalloa site;
metallopeptidase containing CO-catalytic metalloactive
site; 1.74A {Shewanella denitrificans OS217} PDB:
3ieh_A*
Length = 275
Score = 55.6 bits (133), Expect = 3e-10
Identities = 10/71 (14%), Positives = 19/71 (26%), Gaps = 7/71 (9%)
Query: 21 NCDDHFPNG--ITNGAYWYDVKGGMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFWKDN 78
D F + +T+G + + F E P + + N
Sbjct: 206 LAKDGFIDECPVTDGVIFNHFDTSFEAFLVRSGAKLAACSET-----PGQEDFDRRVQAN 260
Query: 79 KEALLAFMEQT 89
A+ F+
Sbjct: 261 SAAMGQFIAHC 271
Score = 43.6 bits (102), Expect = 6e-06
Identities = 6/52 (11%), Positives = 11/52 (21%), Gaps = 5/52 (9%)
Query: 92 GVKGGMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFWKDNKEALLAFMEQT 143
+ F E P + + N A+ F+
Sbjct: 225 HFDTSFEAFLVRSGAKLAACSET-----PGQEDFDRRVQANSAAMGQFIAHC 271
>2qvp_A Uncharacterized protein; putative metallopeptidase, structural
genomics, joint center structural genomics, JCSG; HET:
MSE; 2.00A {Shewanella amazonensis}
Length = 275
Score = 52.0 bits (124), Expect = 6e-09
Identities = 10/86 (11%), Positives = 20/86 (23%), Gaps = 9/86 (10%)
Query: 5 LAQTYANGNPVMKTGTNCDDHFPNGITNGAYWYDVKGGMQDFNYVYSNCFEVTFELSCCK 64
L P+ G + + +G + + F E
Sbjct: 195 LRDALGQYFPIAADGDVDNCP----VRSGVIFNHFDTSFESFLVRSGARVGCCSET---- 246
Query: 65 FPRASQMPKFWKDNKEALLAFMEQTH 90
P + + N A+ F+
Sbjct: 247 -PGQQPLDQRILANAAAMNTFVNMLA 271
Score = 39.7 bits (92), Expect = 1e-04
Identities = 6/52 (11%), Positives = 11/52 (21%), Gaps = 5/52 (9%)
Query: 93 VKGGMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFWKDNKEALLAFMEQTH 144
+ F E P + + N A+ F+
Sbjct: 225 FDTSFESFLVRSGARVGCCSET-----PGQQPLDQRILANAAAMNTFVNMLA 271
>4a37_A Metallo-carboxypeptidase; metallo-protease, hydrolase; 1.60A
{Pseudomonas aeruginosa} PDB: 4a38_A 4a39_A*
Length = 388
Score = 48.2 bits (114), Expect = 2e-07
Identities = 10/84 (11%), Positives = 18/84 (21%), Gaps = 8/84 (9%)
Query: 1 MFKHLAQTYANGNPVMKTGTNCDDHFPNGITNGAYWYDVKGGMQDFNYVYSNCFEVTFEL 60
+ + + + G N A + G D C T E+
Sbjct: 298 RLEQRFREELMARGEFQIR-HGYPRSAPGQANLALACNFVGQTYD-------CLAFTIEM 349
Query: 61 SCCKFPRASQMPKFWKDNKEALLA 84
+ W + L
Sbjct: 350 PFKDHDDNPEPGTGWSGARSKRLG 373
Score = 35.9 bits (82), Expect = 0.003
Identities = 15/120 (12%), Positives = 33/120 (27%), Gaps = 17/120 (14%)
Query: 36 WYDVKGGMQDFNYVYS----------NCFEVTFELSCCKFPRASQMPKFWKDNKEALLAF 85
+ V+ M+ + F E + PR ++ + +++ A F
Sbjct: 254 VWFVQQEMKRHGVDLFLDIHGDEEIPHVFAAGCEGNPGYTPRLERLEQRFREELMARGEF 313
Query: 86 -MEQTHLGVKGG------MQDFNYVYSNCFEVTFELSCCKFPRASQMPKFWKDNKEALLA 138
+ + G +F +C T E+ + W + L
Sbjct: 314 QIRHGYPRSAPGQANLALACNFVGQTYDCLAFTIEMPFKDHDDNPEPGTGWSGARSKRLG 373
>3k2k_A Putative carboxypeptidase; structural genomics, joint center
structural genomics, JCSG, protein structure initiative;
2.49A {Burkholderia mallei atcc 23344}
Length = 403
Score = 39.8 bits (92), Expect = 1e-04
Identities = 11/64 (17%), Positives = 17/64 (26%)
Query: 21 NCDDHFPNGITNGAYWYDVKGGMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFWKDNKE 80
+ D +G G Y D + C +T E+ W +
Sbjct: 325 SPDFQDEHGYPPGKYREDAFKLASKYIGHRFGCLSLTLEMPFKDNANLPDEHIGWNGARS 384
Query: 81 ALLA 84
A L
Sbjct: 385 ASLG 388
Score = 32.5 bits (73), Expect = 0.037
Identities = 6/44 (13%), Positives = 10/44 (22%)
Query: 95 GGMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFWKDNKEALLA 138
+ C +T E+ W + A L
Sbjct: 345 KLASKYIGHRFGCLSLTLEMPFKDNANLPDEHIGWNGARSASLG 388
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.46
Identities = 15/86 (17%), Positives = 26/86 (30%), Gaps = 33/86 (38%)
Query: 54 FEVTFELSCCKFPRASQM------------PKFWKDNKEA----LLA-FM-------EQT 89
E + F ASQ+ F D++ L+ F+ E +
Sbjct: 16 LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPS 75
Query: 90 HLGVKGGMQDFNYVYS---NCFEVTF 112
+G F+ V + FE +
Sbjct: 76 KVG------QFDQVLNLCLTEFENCY 95
Score = 26.2 bits (57), Expect = 6.1
Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 17/50 (34%)
Query: 108 FEVTFELSCCKFPRASQM------------PKFWKDNKEA----LLA-FM 140
E + F ASQ+ F D++ L+ F+
Sbjct: 16 LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFL 65
>2x3c_A Toxic extracellular endopeptidase; hydrolase; 1.99A {Aeromonas
salmonicida subsp} PDB: 2x3a_A 2x3b_A
Length = 343
Score = 28.0 bits (61), Expect = 1.2
Identities = 17/87 (19%), Positives = 27/87 (31%), Gaps = 9/87 (10%)
Query: 24 DHFPN---GITNGAYWYDVKGGMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFWKDNKE 80
+F I N +D F YVY + + C P D++
Sbjct: 234 TNFSKIKDAIDNKPLTFDCSCKQSYFAYVYPDQPYKVY---LC--KSFWTAPVTGSDSRA 288
Query: 81 ALLAFMEQTHLGVKGGMQDFNYVYSNC 107
+ + +H V G D Y +N
Sbjct: 289 GTI-VHQLSHFNVVAGTDDLGYGQANA 314
>3l2n_A Peptidase M14, carboxypeptidase A; putative carboxypeptidase A,
structural genomics, joint CENT structural genomics,
JCSG; 2.39A {Shewanella denitrificans}
Length = 395
Score = 26.3 bits (57), Expect = 4.7
Identities = 6/64 (9%), Positives = 13/64 (20%)
Query: 21 NCDDHFPNGITNGAYWYDVKGGMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFWKDNKE 80
+ D G ++ C T E+ + + W +
Sbjct: 316 SADFQTEFGYDKDEPGKANLTVACNWVANTFKCLSNTLEMPFKDNANLADPFQGWSPERS 375
Query: 81 ALLA 84
Sbjct: 376 VYFG 379
>2qee_A BH0493 protein; amidohydrolase, structural genomics, PSI-2, protein
structure initiative; 1.65A {Bacillus halodurans c-125}
PDB: 3hka_A* 2q6e_A 3hk5_A* 3hk7_A* 3hk8_A* 3hk9_A*
2q08_A* 2pnk_A*
Length = 437
Score = 26.2 bits (57), Expect = 5.6
Identities = 4/23 (17%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 25 HFPNGITNGAYWY-DVKGGMQDF 46
F N + G +W+ + + +
Sbjct: 317 KFSNLMIFGCWWFMNNPEIINEM 339
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 25.5 bits (55), Expect = 8.2
Identities = 13/88 (14%), Positives = 30/88 (34%), Gaps = 28/88 (31%)
Query: 66 PRASQMP---KFWKDNKEALLA--------FMEQTHLGVKGGMQDFNYVYSNCFEVTFEL 114
R +Q P + W++ + L ++ K ++++
Sbjct: 78 DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEW---NQR-------- 126
Query: 115 SCCKFPRASQMPKFWKDNKEALLAFMEQ 142
++ Q+ K +N+ A AF +Q
Sbjct: 127 ------QSEQVEKNKINNRIADKAFYQQ 148
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.136 0.452
Gapped
Lambda K H
0.267 0.0505 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,356,699
Number of extensions: 121752
Number of successful extensions: 299
Number of sequences better than 10.0: 1
Number of HSP's gapped: 296
Number of HSP's successfully gapped: 28
Length of query: 152
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 67
Effective length of database: 4,328,508
Effective search space: 290010036
Effective search space used: 290010036
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.7 bits)