RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17399
(152 letters)
>d1uwya2 c.56.5.1 (A:1-296) Carboxypeptidase M, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 296
Score = 125 bits (315), Expect = 9e-37
Identities = 49/93 (52%), Positives = 71/93 (76%), Gaps = 2/93 (2%)
Query: 1 MFKHLAQTYANGNPVMKTGTNC--DDHFPNGITNGAYWYDVKGGMQDFNYVYSNCFEVTF 58
+F++LA TYA+ NP MK G C +FPNG+TNG WY ++GGMQD+NY+++ CFE+T
Sbjct: 204 VFQYLAHTYASRNPNMKKGDECKNKMNFPNGVTNGYSWYPLQGGMQDYNYIWAQCFEITL 263
Query: 59 ELSCCKFPRASQMPKFWKDNKEALLAFMEQTHL 91
ELSCCK+PR ++P FW +NK +L+ +++Q HL
Sbjct: 264 ELSCCKYPREEKLPSFWNNNKASLIEYIKQVHL 296
Score = 86.8 bits (214), Expect = 7e-22
Identities = 28/53 (52%), Positives = 44/53 (83%)
Query: 93 VKGGMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFWKDNKEALLAFMEQTHL 145
++GGMQD+NY+++ CFE+T ELSCCK+PR ++P FW +NK +L+ +++Q HL
Sbjct: 244 LQGGMQDYNYIWAQCFEITLELSCCKYPREEKLPSFWNNNKASLIEYIKQVHL 296
>d1h8la2 c.56.5.1 (A:4-304) Carboxypeptidase D, catalytic domain
{Crested duck (Lophonetta specularioides) [TaxId: 8836]}
Length = 301
Score = 107 bits (268), Expect = 8e-30
Identities = 48/95 (50%), Positives = 69/95 (72%), Gaps = 5/95 (5%)
Query: 1 MFKHLAQTYANGNPVMKTGTNCDD-----HFPNGITNGAYWYDVKGGMQDFNYVYSNCFE 55
+F+ LA +Y+ N M G+ C D +FP+GITNGA WY+V GGMQD+NY+ +NCFE
Sbjct: 206 VFQQLALSYSKENKKMYQGSPCKDLYPTEYFPHGITNGAQWYNVPGGMQDWNYLNTNCFE 265
Query: 56 VTFELSCCKFPRASQMPKFWKDNKEALLAFMEQTH 90
VT EL C K+P+A ++PK+W+ N+ +LL F++Q H
Sbjct: 266 VTIELGCVKYPKAEELPKYWEQNRRSLLQFIKQVH 300
Score = 78.4 bits (192), Expect = 8e-19
Identities = 29/52 (55%), Positives = 42/52 (80%)
Query: 93 VKGGMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFWKDNKEALLAFMEQTH 144
V GGMQD+NY+ +NCFEVT EL C K+P+A ++PK+W+ N+ +LL F++Q H
Sbjct: 249 VPGGMQDWNYLNTNCFEVTIELGCVKYPKAEELPKYWEQNRRSLLQFIKQVH 300
>d1obra_ c.56.5.2 (A:) Carboxypeptidase T {Thermoactinomyces
vulgaris [TaxId: 2026]}
Length = 323
Score = 65.3 bits (158), Expect = 6e-14
Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 18/93 (19%)
Query: 1 MFKHLAQTYANGNPVMKTGTNCDDHFPNGITNGAYWYDVKGGMQDFNYVYSNCFEVTFEL 60
+FK +A T A N + Y G M D+ Y F TFE+
Sbjct: 232 VFKTMANTMAQTNGYT-------------PQQASDLYITDGDMTDWAYGQHKIFAFTFEM 278
Query: 61 SCCK-----FPRASQMPKFWKDNKEALLAFMEQ 88
+P + + NKEA+L E+
Sbjct: 279 YPTSYNPGFYPPDEVIGRETSRNKEAVLYVAEK 311
Score = 60.3 bits (145), Expect = 3e-12
Identities = 18/125 (14%), Positives = 29/125 (23%), Gaps = 5/125 (4%)
Query: 23 DDHFPNGITNGAYWYDVKGGMQDFNYVYSNCFEVTFELSCCKFPRASQMPKFWKDNKEAL 82
+ G + Y Y + +
Sbjct: 187 NSRVVGGKQQIKTLITFHTYSELILYPYGYTYTDVPSDMTQDDFNVFKTMANTMAQTNGY 246
Query: 83 LAFMEQTHLGVKGGMQDFNYVYSNCFEVTFELSCCK-----FPRASQMPKFWKDNKEALL 137
G M D+ Y F TFE+ +P + + NKEA+L
Sbjct: 247 TPQQASDLYITDGDMTDWAYGQHKIFAFTFEMYPTSYNPGFYPPDEVIGRETSRNKEAVL 306
Query: 138 AFMEQ 142
E+
Sbjct: 307 YVAEK 311
>d2bo9a1 c.56.5.1 (A:4-307) Carboxypeptidase A {Human (Homo sapiens)
[TaxId: 9606]}
Length = 305
Score = 56.8 bits (136), Expect = 6e-11
Identities = 17/93 (18%), Positives = 25/93 (26%), Gaps = 10/93 (10%)
Query: 2 FKHLAQTYANGNPVMKTGTNCDDHFPNGITNGAYWYDVKGGMQDFNYVYSNCFEVTFELS 61
+A+ A + Y G D+ Y F TFEL
Sbjct: 217 LDKVARLAAKALASV------SGTEYQVGPTCTTVYPASGSSIDWAYDNGIKFAFTFELR 270
Query: 62 ---CCKF-PRASQMPKFWKDNKEALLAFMEQTH 90
F A+Q+ ++ L ME
Sbjct: 271 DTGTYGFLLPANQIIPTAEETWLGLKTIMEHVR 303
Score = 45.3 bits (106), Expect = 6e-07
Identities = 28/151 (18%), Positives = 44/151 (29%), Gaps = 21/151 (13%)
Query: 7 QTYANGNPVMKTGTNCDDHFPNGITNGAYWYDVKGGMQDFNYVYSNCFEVTFELSCCKFP 66
+ Y + + F N + D+ Q Y Y S K P
Sbjct: 161 EVYHGPHANSEVEVKSVVDFIQKHGNFKGFIDLHSYSQLLMYPYGY--------SVKKAP 212
Query: 67 RASQMPKFWKDNKEALLAFMEQTHLG---------VKGGMQDFNYVYSNCFEVTFELS-- 115
A ++ K + +AL + + G D+ Y F TFEL
Sbjct: 213 DAEELDKVARLAAKALASVSGTEYQVGPTCTTVYPASGSSIDWAYDNGIKFAFTFELRDT 272
Query: 116 -CCKF-PRASQMPKFWKDNKEALLAFMEQTH 144
F A+Q+ ++ L ME
Sbjct: 273 GTYGFLLPANQIIPTAEETWLGLKTIMEHVR 303
>d1m4la_ c.56.5.1 (A:) Carboxypeptidase A {Cow (Bos taurus) [TaxId:
9913]}
Length = 307
Score = 56.7 bits (136), Expect = 6e-11
Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 10/93 (10%)
Query: 1 MFKHLAQTYANGNPVMKTGTNCDDHFPNGITNGAYWYDVKGGMQDFNYVYSNCFEVTFEL 60
+A++ + + Y GG D++Y + TFEL
Sbjct: 218 ELNQVAKSAVAALKSLYGTSYKYGSIITT------IYQASGGSIDWSYNQGIKYSFTFEL 271
Query: 61 SCCK----FPRASQMPKFWKDNKEALLAFMEQT 89
ASQ+ ++ +L ME T
Sbjct: 272 RDTGRYGFLLPASQIIPTAQETWLGVLTIMEHT 304
Score = 49.8 bits (118), Expect = 1e-08
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 93 VKGGMQDFNYVYSNCFEVTFELSCCK----FPRASQMPKFWKDNKEALLAFMEQT 143
GG D++Y + TFEL ASQ+ ++ +L ME T
Sbjct: 250 ASGGSIDWSYNQGIKYSFTFELRDTGRYGFLLPASQIIPTAQETWLGVLTIMEHT 304
>d1ayea1 c.56.5.1 (A:1-309) Carboxypeptidase A {Human (Homo sapiens)
[TaxId: 9606]}
Length = 307
Score = 56.7 bits (136), Expect = 7e-11
Identities = 19/93 (20%), Positives = 28/93 (30%), Gaps = 10/93 (10%)
Query: 2 FKHLAQTYANGNPVMKTGTNCDDHFPNGITNGAYWYDVKGGMQDFNYVYSNCFEVTFEL- 60
+AQ A + + Y GG D++Y Y + FEL
Sbjct: 217 LSEVAQKAAQSLRSL------HGTKYKVGPICSVIYQASGGSIDWSYDYGIKYSFAFELR 270
Query: 61 --SCCKF-PRASQMPKFWKDNKEALLAFMEQTH 90
F A Q+ ++ L A ME
Sbjct: 271 DTGRYGFLLPARQILPTAEETWLGLKAIMEHVR 303
Score = 48.3 bits (114), Expect = 5e-08
Identities = 22/151 (14%), Positives = 42/151 (27%), Gaps = 21/151 (13%)
Query: 7 QTYANGNPVMKTGTNCDDHFPNGITNGAYWYDVKGGMQDFNYVYSNCFEVTFELSCCKFP 66
+Y + + F + + Q + Y C K
Sbjct: 161 DSYHGPSANSEVEVKSIVDFIKSHGKVKAFIILHSYSQLLMFPYGY--------KCTKLD 212
Query: 67 RASQMPKFWKDNKEALLAFMEQTHLG---------VKGGMQDFNYVYSNCFEVTFEL--- 114
++ + + ++L + + GG D++Y Y + FEL
Sbjct: 213 DFDELSEVAQKAAQSLRSLHGTKYKVGPICSVIYQASGGSIDWSYDYGIKYSFAFELRDT 272
Query: 115 SCCKF-PRASQMPKFWKDNKEALLAFMEQTH 144
F A Q+ ++ L A ME
Sbjct: 273 GRYGFLLPARQILPTAEETWLGLKAIMEHVR 303
>d1z5ra1 c.56.5.1 (A:6-308) Carboxypeptidase B {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 304
Score = 46.7 bits (110), Expect = 2e-07
Identities = 17/91 (18%), Positives = 26/91 (28%), Gaps = 10/91 (10%)
Query: 2 FKHLAQTYANGNPVMKTGTNCDDHFPNGITNGAYWYDVKGGMQDFNYVYSNCFEVTFEL- 60
+LA+ + GT Y GG D+ Y + TFEL
Sbjct: 215 LNNLAKAAVKELATLY-GTKYTYG-----PGATTIYPAAGGSDDWAYDQGIKYSFTFELR 268
Query: 61 --SCCKF-PRASQMPKFWKDNKEALLAFMEQ 88
F SQ+ ++ A+
Sbjct: 269 DKGRYGFILPESQIQATCEETMLAIKYVTNY 299
Score = 39.4 bits (91), Expect = 6e-05
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 4/54 (7%)
Query: 93 VKGGMQDFNYVYSNCFEVTFEL---SCCKF-PRASQMPKFWKDNKEALLAFMEQ 142
GG D+ Y + TFEL F SQ+ ++ A+
Sbjct: 246 AAGGSDDWAYDQGIKYSFTFELRDKGRYGFILPESQIQATCEETMLAIKYVTNY 299
>d2c1ca1 c.56.5.1 (A:7-309) Carboxypeptidase B {Corn earworm
(Helicoverpa zea) [TaxId: 7113]}
Length = 312
Score = 34.8 bits (79), Expect = 0.002
Identities = 9/93 (9%), Positives = 26/93 (27%), Gaps = 8/93 (8%)
Query: 2 FKHLAQTYANGNPVMKTGTNCDDHFPNGITNGAYWYDVKGGMQDFNYVYSNCFEVTFELS 61
+ A+ + + G + Y + G +D+ + T+EL
Sbjct: 216 LHTVGVAMAS--VIQSNALPNFPPYTVGNSALVIGYYIAGSSEDYAHSIGVPLSYTYELP 273
Query: 62 CCK------FPRASQMPKFWKDNKEALLAFMEQ 88
+ + ++ E ++ +
Sbjct: 274 GLSSGWDGFHLPPQYIEQVCRETWEGIVVGARR 306
Score = 25.1 bits (54), Expect = 4.5
Identities = 6/56 (10%), Positives = 18/56 (32%), Gaps = 6/56 (10%)
Query: 93 VKGGMQDFNYVYSNCFEVTFELSCCK------FPRASQMPKFWKDNKEALLAFMEQ 142
+ G +D+ + T+EL + + ++ E ++ +
Sbjct: 251 IAGSSEDYAHSIGVPLSYTYELPGLSSGWDGFHLPPQYIEQVCRETWEGIVVGARR 306
>d1g12a_ d.92.1.12 (A:) Fungal zinc peptidase {Grifola frondosa
[TaxId: 5627]}
Length = 167
Score = 27.2 bits (60), Expect = 0.63
Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 17/79 (21%)
Query: 46 FNYVYSNCF-EVTFELSCCK-------FPRASQM----PKFW-----KDNKEALLAFMEQ 88
+ + SN F +F+ +C +P FW + +A E
Sbjct: 60 YTDMNSNDFSSYSFDCTCTAAGTFAYVYPNRFGTVYLCGAFWKAPTTGTDSQAGTLVHES 119
Query: 89 THLGVKGGMQDFNYVYSNC 107
+H GG +D+ Y +
Sbjct: 120 SHFTRNGGTKDYAYGQAAA 138
>d1gff1_ b.121.5.1 (1:) Microvirus capsid proteins {Bacteriophage G4
[TaxId: 10843]}
Length = 417
Score = 27.5 bits (61), Expect = 0.69
Identities = 18/74 (24%), Positives = 26/74 (35%), Gaps = 8/74 (10%)
Query: 69 SQMPKFWKDNKEALLAFMEQTHLGVKGGM--QDFN-YVYSNCFE---VTFELSCCKFPRA 122
+FW + +Q+ LG G Q FN V V L+ +FP
Sbjct: 228 LMRSEFWASGYDVDGT--DQSSLGQFSGRVQQTFNHKVPRFYVPEHGVIMTLAVTRFPPT 285
Query: 123 SQMPKFWKDNKEAL 136
+M + KE L
Sbjct: 286 HEMEMHYLVGKENL 299
Score = 25.6 bits (56), Expect = 3.5
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 3/39 (7%)
Query: 47 NYVYSNCFE---VTFELSCCKFPRASQMPKFWKDNKEAL 82
+ V V L+ +FP +M + KE L
Sbjct: 261 HKVPRFYVPEHGVIMTLAVTRFPPTHEMEMHYLVGKENL 299
>d1jqga1 c.56.5.1 (A:1-310) Carboxypeptidase A {Cotton bollworm
(Helicoverpa armigera) [TaxId: 29058]}
Length = 317
Score = 26.7 bits (58), Expect = 1.3
Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 8/60 (13%)
Query: 37 YDVKGGMQDFNYVYSNCFEVTFELSCCK--------FPRASQMPKFWKDNKEALLAFMEQ 88
Y GG D+ + F T+EL + + + + E +
Sbjct: 251 YAASGGASDYAMQAAAPFSYTYELPAYRNSVWFDGFLVDPDFIEQAGFETWEGIKVGARA 310
Score = 24.4 bits (52), Expect = 8.0
Identities = 8/56 (14%), Positives = 16/56 (28%), Gaps = 8/56 (14%)
Query: 95 GGMQDFNYVYSNCFEVTFELSCCK--------FPRASQMPKFWKDNKEALLAFMEQ 142
GG D+ + F T+EL + + + + E +
Sbjct: 255 GGASDYAMQAAAPFSYTYELPAYRNSVWFDGFLVDPDFIEQAGFETWEGIKVGARA 310
>d2bv3a1 b.43.3.1 (A:283-403) Elongation factor G (EF-G), domain
II {Thermus thermophilus [TaxId: 274]}
Length = 121
Score = 25.0 bits (54), Expect = 3.1
Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 3/63 (4%)
Query: 21 NCDDHFPNGITNGAYWYDVKGGMQDFNYVYSNCFEVTFELSCC---KFPRASQMPKFWKD 77
+ D + P D G F VYS + + R +++ + +
Sbjct: 20 HPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHAN 79
Query: 78 NKE 80
++E
Sbjct: 80 HRE 82
>d1jv2a4 b.69.8.1 (A:1-438) Integrin alpha N-terminal domain {Human
(Homo sapiens), isoform V [TaxId: 9606]}
Length = 438
Score = 25.4 bits (54), Expect = 3.3
Identities = 12/91 (13%), Positives = 22/91 (24%), Gaps = 5/91 (5%)
Query: 27 PNGITNGAYWYDVKGGMQDFNYVYSNCFEVTFELS-----CCKFPRASQMPKFWKDNKEA 81
+ I A Y + M+ CF + C + F +
Sbjct: 102 QDKILACAPLYHWRTEMKQEREPVGTCFLQDGTKTVEYAPCRSQDIDADGQGFCQGGFSI 161
Query: 82 LLAFMEQTHLGVKGGMQDFNYVYSNCFEVTF 112
++ LG G + S+
Sbjct: 162 DFTKADRVLLGGPGSFYWQGQLISDQVAEIV 192
>d1poca_ a.133.1.1 (A:) Phospholipase A2 {European honeybee (Apis
mellifera) [TaxId: 7460]}
Length = 134
Score = 24.1 bits (52), Expect = 6.6
Identities = 4/19 (21%), Positives = 11/19 (57%)
Query: 46 FNYVYSNCFEVTFELSCCK 64
FN + + C+++ ++ C
Sbjct: 88 FNLIDTKCYKLEHPVTGCG 106
Score = 24.1 bits (52), Expect = 6.6
Identities = 4/19 (21%), Positives = 11/19 (57%)
Query: 100 FNYVYSNCFEVTFELSCCK 118
FN + + C+++ ++ C
Sbjct: 88 FNLIDTKCYKLEHPVTGCG 106
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.136 0.452
Gapped
Lambda K H
0.267 0.0458 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 601,009
Number of extensions: 26243
Number of successful extensions: 110
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 27
Length of query: 152
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 74
Effective length of database: 1,336,656
Effective search space: 98912544
Effective search space used: 98912544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.3 bits)