BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1740
(505 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CUC|A Chain A, Crystal Structure Of A Fic Domain Containing Signaling
Protein (Bt_2513) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.71 A Resolution
pdb|3CUC|B Chain B, Crystal Structure Of A Fic Domain Containing Signaling
Protein (Bt_2513) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.71 A Resolution
Length = 291
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 90/191 (47%), Gaps = 24/191 (12%)
Query: 81 YHTVGIEGNSMSLAQTRSIVETRMAIGGKSIAEHNEILGLDLALKYINNTLVNRVGDITV 140
Y++ +EGN+++ QT+ ++ G S+ ++ E ++ L+ I ++ +T
Sbjct: 38 YNSNHLEGNTLTYGQTKLLLXFGETSGNASLKDYEEXKAHNVGLEXIKQEAQDKERPLTE 97
Query: 141 ADLLEIHKRVLGFADPLAS-----GMFRRTQVFVGGXXXXXXXXXXXLMDEF-------- 187
+ + E+++ +L D + G R Q+ VG + F
Sbjct: 98 SFIRELNRTIL-VQDYWKNAKTPDGQDIRXQIKVGEYKSRPNSVLTATGEVFSYASPEET 156
Query: 188 -------IAWLN--SDVALRMHPVRFAAIAHYKLVHIHPFIDGNGRTSRLLMNLILMQAG 238
+ W N +D + + PV AA+ HY+ + IHPF DGNGR +RLL+N +L + G
Sbjct: 157 PAFXTSLVDWYNLEADKGI-LTPVELAALLHYRYIRIHPFEDGNGRIARLLVNFVLHRYG 215
Query: 239 FPPVIIPKHER 249
+P ++I ++
Sbjct: 216 YPXIVIHSEDK 226
>pdb|3N3U|A Chain A, Crystal Structure Of Ibpafic2
Length = 299
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 186 EFIAWLNSDVALRMHPVRFAAIAHYKLVHIHPFIDGNGRTSRLLMNLILMQAGFP----- 240
E + ++N + P A+ + +L+ HPF +GNGR +R+++N IL+ AG+P
Sbjct: 200 ETVDFINRAKNEGIEPSVVGALVYQRLIAYHPFAEGNGRMARVIVNKILLDAGYPAFTKF 259
Query: 241 -----PVIIPKHERHTIKST 255
P IIP+ + T +T
Sbjct: 260 SDEFEPQIIPQTKASTKSAT 279
>pdb|4ITR|A Chain A, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|B Chain B, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 316
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 186 EFIAWLNSDVALRMHPVRFAAIAHYKLVHIHPFIDGNGRTSRLLMNLILMQAGFP----- 240
E + ++N + P A+ + +L+ PF +GNGR +R+++N IL+ AG+P
Sbjct: 206 ETVDFINRAKNEGIEPSVVGALVYQRLIAYAPFAEGNGRMARVIVNKILLDAGYPAFTKF 265
Query: 241 -----PVIIPKHERHTIKST 255
P IIP+ + T +T
Sbjct: 266 SDEFEPQIIPQTKASTKSAT 285
>pdb|3EQX|A Chain A, Crystal Structure Of A Fic Family Protein (So_4266) From
Shewanella Oneidensis At 1.6 A Resolution
pdb|3EQX|B Chain B, Crystal Structure Of A Fic Family Protein (So_4266) From
Shewanella Oneidensis At 1.6 A Resolution
Length = 373
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 24/35 (68%)
Query: 201 PVRFAAIAHYKLVHIHPFIDGNGRTSRLLMNLILM 235
P+ A AHY+ IHPFIDGNGRT R+L L L+
Sbjct: 184 PLIKXAXAHYQFEAIHPFIDGNGRTGRVLNILYLI 218
>pdb|2G03|A Chain A, Structure Of A Putative Cell Filamentation Protein From
Neisseria Meningitidis
Length = 194
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 14/108 (12%)
Query: 132 VNRVGDITVADLLEIHKRVLGFADPLASGMFRRTQVFVGGXXXXXXXXXXXLMDEFIAWL 191
++R+ T A L +IH+ + G A G R + GG +
Sbjct: 34 IDRIEVGTTAGLQQIHRYLFGGLYDFA-GQIREDNISKGGFRFANAXYLKEAL------- 85
Query: 192 NSDVALRMHPVRF--AAIAHYKLVHI-HPFIDGNGRTSRLLMNLILMQ 236
V + P R IA Y +I HPF++GNGR++R+ ++L+L +
Sbjct: 86 ---VKIEQXPERTFEEIIAKYVEXNIAHPFLEGNGRSTRIWLDLVLKK 130
>pdb|3S6A|A Chain A, Fic Protein From Neisseria Meningitidis In Complex With
Amppnp
Length = 188
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 14/106 (13%)
Query: 132 VNRVGDITVADLLEIHKRVLGFADPLASGMFRRTQVFVGGXXXXXXXXXXXLMDEFIAWL 191
++R+ T A L +IH+ + G A G R + GG +
Sbjct: 28 IDRIEVGTTAGLQQIHRYLFGGLYDFA-GQIREDNISKGGFRFANAMYLKEAL------- 79
Query: 192 NSDVALRMHPVRF--AAIAHYKLVHI-HPFIDGNGRTSRLLMNLIL 234
V + P R IA Y ++I HPF++GNGR++R+ ++L+L
Sbjct: 80 ---VKIEQMPERTFEEIIAKYVEMNIAHPFLEGNGRSTRIWLDLVL 122
>pdb|3SN9|A Chain A, Fic Protein From Neisseria Meningitidis Mutant S182aE186A
IN COMPLEX With Amppnp
pdb|3SN9|B Chain B, Fic Protein From Neisseria Meningitidis Mutant S182aE186A
IN COMPLEX With Amppnp
pdb|3SN9|C Chain C, Fic Protein From Neisseria Meningitidis Mutant S182aE186A
IN COMPLEX With Amppnp
pdb|3SN9|D Chain D, Fic Protein From Neisseria Meningitidis Mutant S182aE186A
IN COMPLEX With Amppnp
pdb|3SN9|E Chain E, Fic Protein From Neisseria Meningitidis Mutant S182aE186A
IN COMPLEX With Amppnp
pdb|3SN9|F Chain F, Fic Protein From Neisseria Meningitidis Mutant S182aE186A
IN COMPLEX With Amppnp
pdb|3SN9|G Chain G, Fic Protein From Neisseria Meningitidis Mutant S182aE186A
IN COMPLEX With Amppnp
pdb|3SN9|H Chain H, Fic Protein From Neisseria Meningitidis Mutant S182aE186A
IN COMPLEX With Amppnp
pdb|3SN9|I Chain I, Fic Protein From Neisseria Meningitidis Mutant S182aE186A
IN COMPLEX With Amppnp
pdb|3SN9|J Chain J, Fic Protein From Neisseria Meningitidis Mutant S182aE186A
IN COMPLEX With Amppnp
pdb|3SN9|K Chain K, Fic Protein From Neisseria Meningitidis Mutant S182aE186A
IN COMPLEX With Amppnp
pdb|3SN9|L Chain L, Fic Protein From Neisseria Meningitidis Mutant S182aE186A
IN COMPLEX With Amppnp
pdb|3SN9|M Chain M, Fic Protein From Neisseria Meningitidis Mutant S182aE186A
IN COMPLEX With Amppnp
pdb|3SN9|N Chain N, Fic Protein From Neisseria Meningitidis Mutant S182aE186A
IN COMPLEX With Amppnp
pdb|3SN9|O Chain O, Fic Protein From Neisseria Meningitidis Mutant S182aE186A
IN COMPLEX With Amppnp
pdb|3SN9|P Chain P, Fic Protein From Neisseria Meningitidis Mutant S182aE186A
IN COMPLEX With Amppnp
Length = 188
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 14/106 (13%)
Query: 132 VNRVGDITVADLLEIHKRVLGFADPLASGMFRRTQVFVGGXXXXXXXXXXXLMDEFIAWL 191
++R+ T A L +IH+ + G A G R + GG +
Sbjct: 28 IDRIEVGTTAGLQQIHRYLFGGLYDFA-GQIREDNISKGGFRFANAMYLKEAL------- 79
Query: 192 NSDVALRMHPVRF--AAIAHYKLVHI-HPFIDGNGRTSRLLMNLIL 234
V + P R IA Y ++I HPF++GNGR++R+ ++L+L
Sbjct: 80 ---VKIEQMPERTFEEIIAKYVEMNIAHPFLEGNGRSTRIWLDLVL 122
>pdb|3SE5|A Chain A, Fic Protein From Neisseria Meningitidis Mutant Delta8 In
Complex With Amppnp
pdb|3SE5|B Chain B, Fic Protein From Neisseria Meningitidis Mutant Delta8 In
Complex With Amppnp
pdb|3SE5|C Chain C, Fic Protein From Neisseria Meningitidis Mutant Delta8 In
Complex With Amppnp
pdb|3SE5|D Chain D, Fic Protein From Neisseria Meningitidis Mutant Delta8 In
Complex With Amppnp
Length = 164
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 14/106 (13%)
Query: 132 VNRVGDITVADLLEIHKRVLGFADPLASGMFRRTQVFVGGXXXXXXXXXXXLMDEFIAWL 191
++R+ T A L +IH+ + G A G R + GG +
Sbjct: 28 IDRIEVGTTAGLQQIHRYLFGGLYDFA-GQIREDNISKGGFRFANAMYLKEAL------- 79
Query: 192 NSDVALRMHPVRF--AAIAHYKLVHI-HPFIDGNGRTSRLLMNLIL 234
V + P R IA Y ++I HPF++GNGR++R+ ++L+L
Sbjct: 80 ---VKIEQMPERTFEEIIAKYVEMNIAHPFLEGNGRSTRIWLDLVL 122
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 33.5 bits (75), Expect = 0.28, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 256 PGTNIEALGTISAAIEMKKMGKIDKALKLFEHAFAIAPHNPDVL----NAYGEFIEETQS 311
PG + EA + A K G D+A++ ++ A + P+N + NAY + Q
Sbjct: 5 PGNSAEAWYNLGNA--YYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYK-----QG 57
Query: 312 DIITADKMYFKALISYPEHGQALVN 336
D A + Y KAL YP + +A N
Sbjct: 58 DYDEAIEYYQKALELYPNNAEAWYN 82
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 274 KMGKIDKALKLFEHAFAIAPHNPDVL----NAYGEFIEETQSDIITADKMYFKALISYPE 329
K G D+A++ ++ A + P+N + NAY + Q D A + Y KAL YP
Sbjct: 55 KQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYK-----QGDYDEAIEYYQKALELYPN 109
Query: 330 HGQALVN 336
+ +A N
Sbjct: 110 NAEAKQN 116
>pdb|2VY3|A Chain A, Type Iv Secretion System Effector Protein Bepa
pdb|2VY3|B Chain B, Type Iv Secretion System Effector Protein Bepa
Length = 302
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 184 MDEFIAWLNSDVALRMHPVRFAAIAHYK-LVHIHPFIDGNGRTSRLLMNLILMQAG 238
+D+ +A N+ L AI + L +HPF +GNGRT RL + AG
Sbjct: 126 LDQTLAEKNNLQGLTREEFNSEAIELFNSLNQLHPFREGNGRTQRLFFENLAKAAG 181
>pdb|3IFE|A Chain A, 1.55 Angstrom Resolution Crystal Structure Of Peptidase T
(Pept-1) From Bacillus Anthracis Str. 'ames Ancestor'
Length = 434
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 214 HIHPFIDGNGRTSRLLMNLILMQAGFPPVIIPKHERHTIKSTPGTNI 260
IH DGN T +N++L FP +P ++ HTI +T GT +
Sbjct: 118 QIHENFDGNAITLNEELNIVLTPEQFPE--LPSYKGHTIITTDGTTL 162
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 272 MKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHG 331
+K+ G + +A + A + P + D LN I+ Q +I A ++Y KAL +PE
Sbjct: 281 LKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN-IKREQGNIEEAVRLYRKALEVFPEFA 339
Query: 332 QALVN 336
A N
Sbjct: 340 AAHSN 344
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 274 KMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQA 333
+ G ID A+ + A + PH PD ++E S + A+ Y AL P H +
Sbjct: 249 EQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS-VAEAEDCYNTALRLCPTHADS 307
Query: 334 LVN 336
L N
Sbjct: 308 LNN 310
>pdb|2JK8|A Chain A, Type Iv Secretion System Effector Protein Bepa Complexed
With A Pyrophosphate Moiety
pdb|2JK8|B Chain B, Type Iv Secretion System Effector Protein Bepa Complexed
With A Pyrophosphate Moiety
Length = 302
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 184 MDEFIAWLNSDVALRMHPVRFAAIAHYK-LVHIHPFIDGNGRTSRLLMNLILMQAG 238
+D+ +A N+ L AI + L +HPF +GNGRT RL + AG
Sbjct: 126 LDQTLAEKNNLQGLTREEFNSEAIELFNSLNQLHPFREGNGRTQRLFFENLAKAAG 181
>pdb|2VZA|A Chain A, Type Iv Secretion System Effector Protein Bepa
pdb|2VZA|B Chain B, Type Iv Secretion System Effector Protein Bepa
pdb|2VZA|C Chain C, Type Iv Secretion System Effector Protein Bepa
pdb|2VZA|D Chain D, Type Iv Secretion System Effector Protein Bepa
pdb|2VZA|E Chain E, Type Iv Secretion System Effector Protein Bepa
pdb|2VZA|F Chain F, Type Iv Secretion System Effector Protein Bepa
pdb|2VZA|G Chain G, Type Iv Secretion System Effector Protein Bepa
pdb|2VZA|H Chain H, Type Iv Secretion System Effector Protein Bepa
Length = 298
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 184 MDEFIAWLNSDVALRMHPVRFAAIAHYK-LVHIHPFIDGNGRTSRLLMNLILMQAG 238
+D+ +A N+ L AI + L +HPF +GNGRT RL + AG
Sbjct: 118 LDQTLAEKNNLQGLTREEFNSEAIELFNSLNQLHPFREGNGRTQRLFFENLAKAAG 173
>pdb|2GY5|A Chain A, Tie2 Ligand-Binding Domain Crystal Structure
pdb|2GY7|B Chain B, Angiopoietin-2TIE2 COMPLEX CRYSTAL STRUCTURE
Length = 423
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 70/150 (46%), Gaps = 21/150 (14%)
Query: 28 QALVNRQRTAL-VVEELDRDFLRKIDEKRDQVSSIPESDPALCKAKKESYFQHIYHTVGI 86
+AL+N+ + L V +++ R++ +K+ KR++ S I + C+ + I
Sbjct: 40 EALMNQHQDPLEVTQDVTREWAKKVVWKREKASKI--NGAYFCEGRVRGE--------AI 89
Query: 87 EGNSMSLAQTRSIVETRMAI-----GGKSIAEHNEILGLDLALKYINNTLVNRVGDITVA 141
+M + Q S + + + +I+ ++ + A+ Y N + ++ V V
Sbjct: 90 RIRTMKMRQQASFLPATLTMTVDKGDNVNISFKKVLIKEEDAVIYKNGSFIHSVPRHEVP 149
Query: 142 DLLEIHKRVLGFADPLASGMFRRTQVFVGG 171
D+LE+H L A P +G++ + ++GG
Sbjct: 150 DILEVH---LPHAQPQDAGVY--SARYIGG 174
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 29.6 bits (65), Expect = 4.5, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 256 PGTNIEALGTISAAIEMKKMGKIDKALKLFEHAFAIAPHNPDVL----NAYGEFIEETQS 311
PG + EA + A K G D+A++ ++ A + P+N + NAY + Q
Sbjct: 5 PGNSAEAWYNLGNA--YYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-----QG 57
Query: 312 DIITADKMYFKALISYPEHGQALVN 336
D A + Y KAL P + +A N
Sbjct: 58 DYDEAIEYYQKALELDPNNAEAWYN 82
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 28.9 bits (63), Expect = 7.7, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 256 PGTNIEALGTISAAIEMKKMGKIDKALKLFEHAFAIAPHNPDVL----NAYGEFIEETQS 311
PG + EA + A K G D+A++ ++ A + P+N + NAY + Q
Sbjct: 5 PGNSAEAWYNLGNA--YYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-----QG 57
Query: 312 DIITADKMYFKALISYPEHGQALVN 336
D A + Y KAL P + +A N
Sbjct: 58 DYDEAIEYYQKALELDPNNAEAKQN 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,079,424
Number of Sequences: 62578
Number of extensions: 547589
Number of successful extensions: 1478
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1456
Number of HSP's gapped (non-prelim): 33
length of query: 505
length of database: 14,973,337
effective HSP length: 103
effective length of query: 402
effective length of database: 8,527,803
effective search space: 3428176806
effective search space used: 3428176806
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)