Query psy1740
Match_columns 505
No_of_seqs 468 out of 2054
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 21:32:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1740.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1740hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3824|consensus 100.0 6.3E-59 1.4E-63 453.0 19.3 265 6-272 163-427 (472)
2 KOG3824|consensus 100.0 5.2E-37 1.1E-41 299.8 16.1 221 261-488 115-350 (472)
3 TIGR02613 mob_myst_B mobile my 100.0 1.2E-31 2.7E-36 254.0 12.9 165 89-259 2-173 (186)
4 COG3177 Fic family protein [Fu 100.0 1.2E-28 2.6E-33 255.2 18.6 203 48-259 28-242 (348)
5 PF02661 Fic: Fic/DOC family; 99.9 1.6E-22 3.4E-27 170.6 5.3 95 137-234 1-97 (97)
6 PRK10347 cell filamentation pr 99.7 1.3E-16 2.9E-21 151.9 11.6 138 136-289 52-193 (200)
7 PRK14052 effector protein; Pro 99.7 5E-16 1.1E-20 152.5 12.1 100 135-245 274-378 (387)
8 COG2184 Fic Protein involved i 99.6 1.3E-15 2.7E-20 142.9 7.3 116 138-258 56-171 (201)
9 TIGR01550 DOC_P1 death-on-curi 99.1 2.7E-10 5.7E-15 100.8 7.5 90 138-242 2-91 (121)
10 COG3177 Fic family protein [Fu 98.2 6E-06 1.3E-10 86.1 10.2 107 382-489 54-173 (348)
11 COG3654 Doc Prophage maintenan 98.1 1.5E-05 3.3E-10 70.5 8.7 89 138-242 6-94 (132)
12 TIGR02613 mob_myst_B mobile my 98.0 1.1E-05 2.4E-10 76.7 6.4 89 393-489 2-104 (186)
13 PF13784 Fic_N: Fic/DOC family 98.0 3.1E-05 6.7E-10 64.0 8.0 72 51-129 12-83 (84)
14 PF13776 DUF4172: Domain of un 94.2 0.21 4.5E-06 41.1 7.0 34 70-103 46-79 (82)
15 PF13784 Fic_N: Fic/DOC family 80.6 3.8 8.3E-05 33.8 5.2 48 382-432 35-82 (84)
16 COG3063 PilF Tfp pilus assembl 58.8 22 0.00048 35.1 5.7 98 218-337 46-145 (250)
17 PF13428 TPR_14: Tetratricopep 58.2 19 0.00041 25.3 4.0 32 272-303 11-42 (44)
18 PF11433 DUF3198: Protein of u 57.0 46 0.001 24.4 5.6 47 317-363 3-49 (51)
19 KOG4626|consensus 54.9 29 0.00063 39.0 6.4 65 272-337 296-360 (966)
20 COG4235 Cytochrome c biogenesi 50.9 39 0.00085 34.4 6.3 95 272-370 166-262 (287)
21 PRK15359 type III secretion sy 50.1 68 0.0015 28.7 7.3 74 272-346 68-141 (144)
22 PF02661 Fic: Fic/DOC family; 45.8 8.9 0.00019 31.3 0.7 45 439-487 11-57 (97)
23 PF07719 TPR_2: Tetratricopept 44.0 36 0.00077 21.7 3.4 23 272-294 11-33 (34)
24 PF13414 TPR_11: TPR repeat; P 41.2 55 0.0012 24.6 4.6 36 271-306 12-47 (69)
25 PF14559 TPR_19: Tetratricopep 41.1 51 0.0011 24.7 4.3 34 273-306 2-35 (68)
26 PF13758 Prefoldin_3: Prefoldi 40.5 2.3E+02 0.0051 24.2 8.9 73 351-436 10-85 (99)
27 KOG4626|consensus 40.4 1.5E+02 0.0033 33.6 9.1 65 270-339 328-396 (966)
28 PF00515 TPR_1: Tetratricopept 35.5 43 0.00092 21.6 2.7 23 272-294 11-33 (34)
29 PF14853 Fis1_TPR_C: Fis1 C-te 34.0 78 0.0017 23.7 4.1 31 269-299 8-38 (53)
30 PF13432 TPR_16: Tetratricopep 33.1 78 0.0017 23.5 4.2 37 271-307 6-42 (65)
31 PF13414 TPR_11: TPR repeat; P 31.7 32 0.00068 26.0 1.8 24 12-35 22-45 (69)
32 PF13431 TPR_17: Tetratricopep 31.4 18 0.00039 24.2 0.3 18 15-32 1-18 (34)
33 PF10652 DUF2480: Protein of u 27.2 66 0.0014 29.9 3.3 96 400-503 33-165 (167)
34 PRK10370 formate-dependent nit 27.1 5.4E+02 0.012 24.3 10.4 67 272-338 83-151 (198)
35 PF13776 DUF4172: Domain of un 26.8 1.4E+02 0.0031 24.5 4.8 28 379-406 51-78 (82)
36 KOG3503|consensus 26.5 19 0.00041 27.4 -0.3 18 2-19 27-44 (64)
37 PRK14052 effector protein; Pro 25.9 46 0.00099 34.3 2.1 71 380-462 228-316 (387)
38 PF13176 TPR_7: Tetratricopept 25.8 85 0.0018 20.9 2.9 19 272-290 9-27 (36)
39 PF13181 TPR_8: Tetratricopept 25.5 84 0.0018 20.0 2.8 22 272-293 11-32 (34)
40 PF13432 TPR_16: Tetratricopep 24.2 1.4E+02 0.0029 22.1 4.1 25 272-296 41-65 (65)
41 TIGR00105 L31 ribosomal protei 22.7 42 0.00092 26.5 1.0 15 214-228 40-61 (68)
42 smart00386 HAT HAT (Half-A-TPR 21.5 2E+02 0.0043 17.5 4.0 31 276-306 1-31 (33)
No 1
>KOG3824|consensus
Probab=100.00 E-value=6.3e-59 Score=453.04 Aligned_cols=265 Identities=53% Similarity=0.877 Sum_probs=250.3
Q ss_pred CcchhhhhhhhhHhhhhCCCCcccccccccchhHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhhc
Q psy1740 6 HPMVYFCLEEDLLALISYPEHGQALVNRQRTALVVEELDRDFLRKIDEKRDQVSSIPESDPALCKAKKESYFQHIYHTVG 85 (505)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~i~~~r~~l~~~p~~~~~l~~l~~e~~~~~i~~S~~ 85 (505)
|-+.--|+.||.|||+++|+++.||+||.||.|+|+++|+.+|+.+|.+++.+..++.++.++++.++|.++.+||||.+
T Consensus 163 ~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~plV~~iD~r~l~svdskrd~~~~i~~sN~ALRR~m~EtYf~hiYHtva 242 (472)
T KOG3824|consen 163 HNEIVEADQCYVKALTISPGNSEALVNRARTTPLVSAIDRRMLRSVDSKRDEFNHIQHSNTALRRMMRETYFLHIYHTVA 242 (472)
T ss_pred hhhhHhhhhhhheeeeeCCCchHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhheeee
Confidence 34455689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHhccccCCCCchhHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHhcCCCCCCCCccccc
Q psy1740 86 IEGNSMSLAQTRSIVETRMAIGGKSIAEHNEILGLDLALKYINNTLVNRVGDITVADLLEIHKRVLGFADPLASGMFRRT 165 (505)
Q Consensus 86 IEGn~lT~~et~~lle~~~~~~~k~~~d~~ei~n~~~A~~~i~~~l~~~~~~ls~~~i~~lH~~L~~~~~~~~~G~~R~~ 165 (505)
||||++|+.||+.+++.+..++||+.++++||+++..|++||+-.+..+...+|.++|+++|+.+++.++|..+|+||+.
T Consensus 243 iegntlsl~~~R~ILEtrmavpGKSi~EhNEviGMdaAmkyiN~sLvski~~itI~DiLE~HRRVLG~vDPvEaGrfRtt 322 (472)
T KOG3824|consen 243 IEGNTLSLGQTRAILETRMAVPGKSIREHNEVIGMDAAMKYINCSLVSKIHDITIDDILEMHRRVLGNVDPVEAGRFRTT 322 (472)
T ss_pred ecccccchHHHHHHHhhcccCCCcChHHhhhhhhHHHHHHHhhhHhhhhccceeHHHHHHHHHHHhcCCCcccccceeee
Confidence 99999999999999999999999999999999999999999999988877789999999999999999999999999999
Q ss_pred cceeccccCCCCCCcHHHHHHHHHHHhhccccCCCHHHHHHHHHHHhccceecccCchhHHHHHHHHHHHhCCCCCeecc
Q psy1740 166 QVFVGGHIPPTPPHIIPLMDEFIAWLNSDVALRMHPVRFAAIAHYKLVHIHPFIDGNGRTSRLLMNLILMQAGFPPVIIP 245 (505)
Q Consensus 166 ~v~ig~~~pp~p~~v~~~m~~l~~~~~~~~~~~~~pi~~Aa~~h~~f~~IHPF~DGNGRtaRLl~n~~L~~~G~~p~~i~ 245 (505)
||++|+|+||.|.+|...|+++++|+|++.....||++.||++||.+++||||.||||||+|||||++|+++||||+.|.
T Consensus 323 QVyVG~hiPp~P~dv~~qmq~fv~WLNsE~~~tlhPve~AAlAHYKLV~iHPF~DGNGRTsRLLmNlilMraGyPPviip 402 (472)
T KOG3824|consen 323 QVYVGRHIPPSPEDVMEQMQDFVDWLNSESTLTLHPVERAALAHYKLVLIHPFTDGNGRTSRLLMNLILMRAGYPPVIIP 402 (472)
T ss_pred eEEecCCCCCChHHHHHHHHHHHHHhccccccccChHHHHHHhhheeEEEeccccCCchHHHHHHHHHHHhcCCCCeeec
Confidence 99999999999999999999999999999888899999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCcccchhccHHHHHHH
Q psy1740 246 KHERHTIKSTPGTNIEALGTISAAIEM 272 (505)
Q Consensus 246 ~~~r~~Yy~aL~~~~e~~~~l~a~i~~ 272 (505)
++.|.+||-.|..+ +.|++..|+.+
T Consensus 403 keqRs~YYh~L~~A--NeGD~RPFvRf 427 (472)
T KOG3824|consen 403 KEQRSEYYHSLHVA--NEGDLRPFVRF 427 (472)
T ss_pred HHHhhhHHHHHhhc--ccccchHHHHH
Confidence 99999999988753 34555555543
No 2
>KOG3824|consensus
Probab=100.00 E-value=5.2e-37 Score=299.76 Aligned_cols=221 Identities=44% Similarity=0.669 Sum_probs=201.4
Q ss_pred chhccHHHHHHHHhcCCHHHHHHHHHHHHHhCCCChhHHhHhhhhhhhccccceechhhHHHHHhcCCcchHHHHHhHHH
Q psy1740 261 EALGTISAAIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQALVNRQRT 340 (505)
Q Consensus 261 e~~~~l~a~i~~~~~g~~~~~~~~f~~~~~~~~~~pdvl~~~r~~~~~~~~~vv~~d~~~~~al~~~p~~~~al~~~~rt 340 (505)
+..+.+.++.+.+..|+.+++.++|+++++++|.+|++|.+++++.++. +++|.+|+.|++|+...|.+.+||.+++||
T Consensus 115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~-~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 115 EAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMH-NEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhh-hhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 5678888999999999999999999999999999999999999998776 899999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcccccCCcCCHHHHHHHHhhccCCCCCchhHHHH
Q psy1740 341 ALVVEELDRDFLRKIDEKRDQVSSIPESDPALCKAKKESYFQHIYHTVGIEGNSMSLAQTRSIVETRMAIGGKSIAEHNE 420 (505)
Q Consensus 341 ~~l~eeld~~~L~~iD~~k~~l~~~rpl~~~l~~~lre~~~~~t~~s~~iEGntlt~~et~~il~~g~~~~g~~~~e~~e 420 (505)
.+|++++|+++|+.+|.++++++.++..+.++.+.+++.||.|+|||+||||||||+.||+.|||+|+.|.|||++||+|
T Consensus 194 ~plV~~iD~r~l~svdskrd~~~~i~~sN~ALRR~m~EtYf~hiYHtvaiegntlsl~~~R~ILEtrmavpGKSi~EhNE 273 (472)
T KOG3824|consen 194 TPLVSAIDRRMLRSVDSKRDEFNHIQHSNTALRRMMRETYFLHIYHTVAIEGNTLSLGQTRAILETRMAVPGKSIREHNE 273 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhheeeeecccccchHHHHHHHhhcccCCCcChHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCHHHHHHHHHHHHhcc------------hhhhcc---cccCCccccccceeccCCccccCCCCcccchhchHHHhhhh
Q psy1740 421 ILGLDLALKYINNTLVNS------------YYQVLE---EANRGDIRPFVRFIAPVTIKFSRRPTEATFGRSSASLLNAR 485 (505)
Q Consensus 421 ~~n~~~a~~~~~~~~~~~------------~~~l~~---~~~~G~~r~~~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~ 485 (505)
|+|+..|++|+...+.++ |..++- ..++|+||+.||++ |.|.||.|..+ ..+|.++ -.|
T Consensus 274 viGMdaAmkyiN~sLvski~~itI~DiLE~HRRVLG~vDPvEaGrfRttQVyV----G~hiPp~P~dv-~~qmq~f-v~W 347 (472)
T KOG3824|consen 274 VIGMDAAMKYINCSLVSKIHDITIDDILEMHRRVLGNVDPVEAGRFRTTQVYV----GRHIPPSPEDV-MEQMQDF-VDW 347 (472)
T ss_pred hhhHHHHHHHhhhHhhhhccceeHHHHHHHHHHHhcCCCcccccceeeeeEEe----cCCCCCChHHH-HHHHHHH-HHH
Confidence 999999999999887666 455543 66899999999999 35888887654 3456554 467
Q ss_pred hcC
Q psy1740 486 TRP 488 (505)
Q Consensus 486 ~~~ 488 (505)
++-
T Consensus 348 LNs 350 (472)
T KOG3824|consen 348 LNS 350 (472)
T ss_pred hcc
Confidence 764
No 3
>TIGR02613 mob_myst_B mobile mystery protein B. Members of this protein family, which we designate mobile mystery protein B, are found in mobization-related contexts more often than not, including within a CRISPR-associated gene region in Geobacter sulfurreducens PCA, and on plasmids in Agrobacterium tumefaciens and Coxiella burnetii, always together with mobile mystery protein A (TIGR02612), a member of the family of helix-turn-helix DNA binding proteins (pfam01381). This protein is encoded by the downstream member of the gene pair and belongs to the Fic protein family (pfam02661), where Fic (filamentation induced by cAMP) is a regulator of cell division. The characteristics of having a two-gene operon in a varied context and often on plasmids, with one member affecting cell division and the other able to bind DNA, suggests similarity to addiction modules.
Probab=99.97 E-value=1.2e-31 Score=254.04 Aligned_cols=165 Identities=23% Similarity=0.363 Sum_probs=131.6
Q ss_pred CCCCHHHHHHHHHhccccCCCCchhHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHhcCCCCCCCCccccccce
Q psy1740 89 NSMSLAQTRSIVETRMAIGGKSIAEHNEILGLDLALKYINNTLVNRVGDITVADLLEIHKRVLGFADPLASGMFRRTQVF 168 (505)
Q Consensus 89 n~lT~~et~~lle~~~~~~~k~~~d~~ei~n~~~A~~~i~~~l~~~~~~ls~~~i~~lH~~L~~~~~~~~~G~~R~~~v~ 168 (505)
+++|.++++++++++.+... ..|+.|+.||.+|+.|+.+....+..+||++.|+++|+.|+++..++ +|.||+.+++
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~--~~de~e~~~~~~A~~~~~~~~~~~~~~l~~~~i~~lH~~l~~~~~~~-aG~~R~~~~~ 78 (186)
T TIGR02613 2 TPLDPEELEGLLPGHITTRG--ELDEFEQANIAEGILWAEGRRRKKKDILSETFLRRLHRRMFGDVWRW-AGDFRTTQKN 78 (186)
T ss_pred CCCCHHHHHHHhhcCCCCcc--cchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHcCCccc-CCccccCCcc
Confidence 57899999999997644322 25889999999999999776543346999999999999999987554 8999999999
Q ss_pred eccccCCCCCCcHHHHHHHHHHHhhccccCCCHHHHHHHHHHHhccceecccCchhHHHHHHHHHHHhCCCCCeec----
Q psy1740 169 VGGHIPPTPPHIIPLMDEFIAWLNSDVALRMHPVRFAAIAHYKLVHIHPFIDGNGRTSRLLMNLILMQAGFPPVII---- 244 (505)
Q Consensus 169 ig~~~pp~p~~v~~~m~~l~~~~~~~~~~~~~pi~~Aa~~h~~f~~IHPF~DGNGRtaRLl~n~~L~~~G~~p~~i---- 244 (505)
||......|..++.+|+++.+|+++. ..+|++.|+.+|++|++||||.||||||||+|++++|.+.|++|+.+
T Consensus 79 ig~~~~~ip~~~~~l~~~l~~~~~~~---~~~~~~~~~~~H~~f~~IHPF~DGNGRt~Rll~~l~L~~~g~~p~~~~~~~ 155 (186)
T TIGR02613 79 IGVSPLQIPSELAILLDDVRYWLQNG---TFSPDEIAIRFHHRLVAIHPFPNGNGRHARLATDLLLEQQGYSPFTWGSGS 155 (186)
T ss_pred cCCChhhcHHHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHheecCcCCCCcHHHHHHHHHHHHHCCCCCccccccc
Confidence 97422222334444444444455443 36899999999999999999999999999999999999999998744
Q ss_pred ---cccccccccCCCCcc
Q psy1740 245 ---PKHERHTIKSTPGTN 259 (505)
Q Consensus 245 ---~~~~r~~Yy~aL~~~ 259 (505)
..++|.+||++|..+
T Consensus 156 ~~~~~~~r~~Y~~aL~~a 173 (186)
T TIGR02613 156 LALVGDLRKEYIAALKAA 173 (186)
T ss_pred hhhHHhhHHHHHHHHHHH
Confidence 378899999999764
No 4
>COG3177 Fic family protein [Function unknown]
Probab=99.96 E-value=1.2e-28 Score=255.17 Aligned_cols=203 Identities=31% Similarity=0.431 Sum_probs=158.9
Q ss_pred HHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHhccccCCCCchhHHHHHHHHHHHHHH
Q psy1740 48 LRKIDEKRDQVSSIPESDPALCKAKKESYFQHIYHTVGIEGNSMSLAQTRSIVETRMAIGGKSIAEHNEILGLDLALKYI 127 (505)
Q Consensus 48 L~~i~~~r~~l~~~p~~~~~l~~l~~e~~~~~i~~S~~IEGn~lT~~et~~lle~~~~~~~k~~~d~~ei~n~~~A~~~i 127 (505)
.+.+..+.+.....+.....+ ....+..++.|++|||+++|..++... .++.+..+++.++..|++|+..|+.++
T Consensus 28 ~~~l~~l~~~~~~~~~~~~~~----~~~~~~~~~~Ss~IEg~~~~~~~~~~~-~~~~~~~~~~~~~~~e~~n~~~a~~~~ 102 (348)
T COG3177 28 LRSLGRLSGVLELLPFNELLI----KELRRKLAHSSSAIEGNTLTLEDLRSS-LEGITGAGKPTDDIKEVLNYERADFYG 102 (348)
T ss_pred HHHHHhhHhHHHhcCCchhHH----HHHHHHHHhhhhhccCccCCHHHHHHh-hhcccccccchhHHHHHHHHHHhhhhh
Confidence 444444444433344433332 345555666799999999999999877 456666777888899999999999999
Q ss_pred HHHhcccCCCCCHHHHHHHHHHHhcCCCCCCCCccccccceec---c---ccCCCCCCcHHHHHHHHHHHhhccccCCCH
Q psy1740 128 NNTLVNRVGDITVADLLEIHKRVLGFADPLASGMFRRTQVFVG---G---HIPPTPPHIIPLMDEFIAWLNSDVALRMHP 201 (505)
Q Consensus 128 ~~~l~~~~~~ls~~~i~~lH~~L~~~~~~~~~G~~R~~~v~ig---~---~~pp~p~~v~~~m~~l~~~~~~~~~~~~~p 201 (505)
.+.+..+ .++|+..|+.+|++++.+.. ...|.+++..+.+. + +.||++..+++.|+.++.|+++. ...+|
T Consensus 103 ~e~l~~~-~~~s~~~i~~lh~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Pp~~~~~~~~m~~~~~~~~~~--~~~~~ 178 (348)
T COG3177 103 LEHLDAG-EPFSWLDILKLHAILTSGLL-LEKGKGRQDVVGIIDSGGVHFHAPPSSQLVEELMEELIGFLQSN--KKIDP 178 (348)
T ss_pred hhccccc-CCCCHHHHHHHHHHHhCccc-cccccccccccceecCCCceeeCCChHHHHHHHHHHHHHHHHcc--Cccch
Confidence 8877544 79999999999999998853 33566654333332 1 56777888999999999999986 35799
Q ss_pred HHHHHHHHHHhccceecccCchhHHHHHHHHHHHhCCCCCeecc------ccccccccCCCCcc
Q psy1740 202 VRFAAIAHYKLVHIHPFIDGNGRTSRLLMNLILMQAGFPPVIIP------KHERHTIKSTPGTN 259 (505)
Q Consensus 202 i~~Aa~~h~~f~~IHPF~DGNGRtaRLl~n~~L~~~G~~p~~i~------~~~r~~Yy~aL~~~ 259 (505)
+++|+++|++|++||||.||||||||+|++++|+++|+.|..+. ...|.+||+++..+
T Consensus 179 l~~a~~~H~~Fe~IHPF~DGNGR~gRlL~~l~L~~~~~~~~~~~~~s~~i~~~~~~Y~~~l~~~ 242 (348)
T COG3177 179 LVKAAIAHFRFEYIHPFEDGNGRTGRLLIFLLLAQAGLAPLVILYDSRYIYNNRADYYRALEAV 242 (348)
T ss_pred HHHHHHHHHHHHhccccccCccHHHHHHHHHHHHHcCchhHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999997552 45788999988764
No 5
>PF02661 Fic: Fic/DOC family; InterPro: IPR003812 This entry contains the Fic (filamentation induced by cAMP) protein and doc (death on curing) protein. The Fic protein is involved in cell division and is suggested to be involved in the synthesis of PAB or folate, indicating that the Fic protein and cAMP are involved in a regulatory mechanism of cell division via folate metabolism []. This family contains a central conserved motif HPFXXGNG in most members. The exact molecular function of these proteins is uncertain. P1 lysogens of Escherichia coli carry the prophage as a stable low copy number plasmid. The frequency with which viable cells cured of prophage are produced is about 10(-5) per cell per generation []. A significant part of this remarkable stability can be attributed to a plasmid-encoded mechanism that causes death of cells that have lost P1 []. In other words, the lysogenic cells appear to be addicted to the presence of the prophage. The plasmid withdrawal response depends on a gene named doc (death on curing) that is represented by this family.; PDB: 3SHG_A 3N3V_A 3N3U_A 2F6S_B 2JK8_B 2VZA_D 2VY3_A 3LET_B 3EQX_A 3SE5_D ....
Probab=99.86 E-value=1.6e-22 Score=170.64 Aligned_cols=95 Identities=44% Similarity=0.723 Sum_probs=84.7
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCccccccc--eeccccCCCCCCcHHHHHHHHHHHhhccccCCCHHHHHHHHHHHhcc
Q psy1740 137 DITVADLLEIHKRVLGFADPLASGMFRRTQV--FVGGHIPPTPPHIIPLMDEFIAWLNSDVALRMHPVRFAAIAHYKLVH 214 (505)
Q Consensus 137 ~ls~~~i~~lH~~L~~~~~~~~~G~~R~~~v--~ig~~~pp~p~~v~~~m~~l~~~~~~~~~~~~~pi~~Aa~~h~~f~~ 214 (505)
|||.+.|+++|+.|+++..+ .+|+||+.++ ..+.+.+++|..++..|+++++|++.. ...+|+++||.+|+.|++
T Consensus 1 plt~~~l~~iH~~l~~~~~~-~~G~~R~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~--~~~~~~~~aa~~~~~~~~ 77 (97)
T PF02661_consen 1 PLTEEDLKEIHRILFRGLYD-WAGEYRTSNVGISGGSYIPPPPEEIPAYLEELFDWLNAN--SEEDPIEKAAWLHYEFVY 77 (97)
T ss_dssp -SSHHHHHHHHHHHHTTTBT-TTTSTCSSTESTEETTEEHSHHHHHHHHHHHHHHHHHHH--THCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCcc-cCCccCCCcccccceeeeCCCccchHHHHHHHHHHhhhc--ccccHHHHHHHHHHHHHh
Confidence 68999999999999998765 4899999988 455688899999999999999999922 346899999999999999
Q ss_pred ceecccCchhHHHHHHHHHH
Q psy1740 215 IHPFIDGNGRTSRLLMNLIL 234 (505)
Q Consensus 215 IHPF~DGNGRtaRLl~n~~L 234 (505)
||||.||||||||++++++|
T Consensus 78 iHPF~dGNgRtarl~~~~~L 97 (97)
T PF02661_consen 78 IHPFRDGNGRTARLLMNLLL 97 (97)
T ss_dssp HCSSSSHHHHHHHHHHHHHH
T ss_pred cCcccCCCHHHHHHHHHHHC
Confidence 99999999999999999987
No 6
>PRK10347 cell filamentation protein Fic; Provisional
Probab=99.69 E-value=1.3e-16 Score=151.93 Aligned_cols=138 Identities=16% Similarity=0.187 Sum_probs=112.7
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCccccccceeccccCCCCCCcHHHHHHHHHHHhhccc----cCCCHHHHHHHHHHH
Q psy1740 136 GDITVADLLEIHKRVLGFADPLASGMFRRTQVFVGGHIPPTPPHIIPLMDEFIAWLNSDVA----LRMHPVRFAAIAHYK 211 (505)
Q Consensus 136 ~~ls~~~i~~lH~~L~~~~~~~~~G~~R~~~v~ig~~~pp~p~~v~~~m~~l~~~~~~~~~----~~~~pi~~Aa~~h~~ 211 (505)
.+++...++.||+.|++++++| +|++|+.++..|+..++.+..|+..++.++..+..... ....-+.++|.++..
T Consensus 52 ~~~d~~~L~~IH~~LFqDvY~W-AG~~Rtv~iskg~~~f~~~~~I~~~~~~l~~~L~~~~~l~~l~~~~f~~~~a~~~~e 130 (200)
T PRK10347 52 LVRGLPHLCAIHRQLYQDIFDW-AGQLREVDIYQGDTPFCHFAYIEKEGNALMQDLEEEGYLVGLEKAKFVERLAHYYCE 130 (200)
T ss_pred CCCCHHHHHHHHHHHHcchHHh-cCcceeccccCCCCccCCHHHHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHH
Confidence 4569999999999999999998 89999999999998888888899888888877654321 111235568888889
Q ss_pred hccceecccCchhHHHHHHHHHHHhCCCCCeeccccccccccCCCCcccchhccHHHHHHHHhcCCHHHHHHHHHHHH
Q psy1740 212 LVHIHPFIDGNGRTSRLLMNLILMQAGFPPVIIPKHERHTIKSTPGTNIEALGTISAAIEMKKMGKIDKALKLFEHAF 289 (505)
Q Consensus 212 f~~IHPF~DGNGRtaRLl~n~~L~~~G~~p~~i~~~~r~~Yy~aL~~~~e~~~~l~a~i~~~~~g~~~~~~~~f~~~~ 289 (505)
+..||||.+|||||.|+++..++..+|| ++.+...+|.+|.+|.. ....|++....++|...+
T Consensus 131 ln~iHPFREGNGRt~r~f~~~la~~aG~-~idw~~~~~~~~~~A~~--------------~a~~~d~~~L~~~~~~~~ 193 (200)
T PRK10347 131 INVLHPFRVGSGLAQRIFFEQLAIHAGY-QLSWQGIEKEAWNQANQ--------------SGAMGDLTALQMIFSKVV 193 (200)
T ss_pred HhHhccccCCCHHHHHHHHHHHHHHcCC-CCCcccCCHHHHHHHHH--------------HHhcCChHHHHHHHHHHH
Confidence 9999999999999999999999999999 57777777777755432 234788888888888776
No 7
>PRK14052 effector protein; Provisional
Probab=99.66 E-value=5e-16 Score=152.49 Aligned_cols=100 Identities=21% Similarity=0.296 Sum_probs=79.4
Q ss_pred CCC-CCHHHHHHHHHHHhcCCC---CCCCCccccccceeccccCCCCCCcHHHHHHHHHHHhhccccCCCHHHHHHHHHH
Q psy1740 135 VGD-ITVADLLEIHKRVLGFAD---PLASGMFRRTQVFVGGHIPPTPPHIIPLMDEFIAWLNSDVALRMHPVRFAAIAHY 210 (505)
Q Consensus 135 ~~~-ls~~~i~~lH~~L~~~~~---~~~~G~~R~~~v~ig~~~pp~p~~v~~~m~~l~~~~~~~~~~~~~pi~~Aa~~h~ 210 (505)
..+ ||+..|++||++++.+.. ...+|.||+.+++++|.- .++..|++++.|..... ...+|+++||++|
T Consensus 274 k~piISe~~IKdLHaLVm~nig~~~r~~aGsYRSs~vvIsGag-----kl~~~LEkFIh~~~~~q-K~lppLv~AALVH- 346 (387)
T PRK14052 274 GKDLLNMDNLKELHARLVPNIERDYRGPAISGGTLPSSIGGEG-----MLKQHIEGFLKENPVAD-KDLGKQLFAGVIG- 346 (387)
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcccccCCCccccccceeccHH-----HHHHHHHHHHHhccccc-ccccHHHHhHhee-
Confidence 357 999999999999998765 345899999999987643 55666666666554432 3478999999666
Q ss_pred HhccceecccCchhHHHHHHHHHHHhCC-CCCeecc
Q psy1740 211 KLVHIHPFIDGNGRTSRLLMNLILMQAG-FPPVIIP 245 (505)
Q Consensus 211 ~f~~IHPF~DGNGRtaRLl~n~~L~~~G-~~p~~i~ 245 (505)
||||.|||||||||||+++-+++| |.|+...
T Consensus 347 ----IHPFlDGNGRtGRLLInLi~lrn~~~~pl~~~ 378 (387)
T PRK14052 347 ----YHGFTDGNGRMGRMLYAIAELRNDSFNPLAMN 378 (387)
T ss_pred ----ecCCCCCCcHHHHHHHHHHHHhcCCcCccccc
Confidence 999999999999999999998886 6787654
No 8
>COG2184 Fic Protein involved in cell division [Cell division and chromosome partitioning]
Probab=99.60 E-value=1.3e-15 Score=142.86 Aligned_cols=116 Identities=22% Similarity=0.344 Sum_probs=103.0
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCCccccccceeccccCCCCCCcHHHHHHHHHHHhhccccCCCHHHHHHHHHHHhcccee
Q psy1740 138 ITVADLLEIHKRVLGFADPLASGMFRRTQVFVGGHIPPTPPHIIPLMDEFIAWLNSDVALRMHPVRFAAIAHYKLVHIHP 217 (505)
Q Consensus 138 ls~~~i~~lH~~L~~~~~~~~~G~~R~~~v~ig~~~pp~p~~v~~~m~~l~~~~~~~~~~~~~pi~~Aa~~h~~f~~IHP 217 (505)
||...+++||+.|++++++| +|.+|+.++++|+..++.|..|+..++..+.|+.... .+++++++..|.++..+||
T Consensus 56 ~~~~~L~~IHR~LFqdiy~w-AG~~R~~~i~kG~~~f~~~~~I~~~ld~~~~~~~~~~---~~~~e~~~~~~~ein~~HP 131 (201)
T COG2184 56 LDLAHLRAIHRQLFQDIYEW-AGQFRTVGISKGDTRFANPSYIERALDYAEQWMPQET---YDFVERAAHKYVEINIAHP 131 (201)
T ss_pred CCHHHHHHHHHHHHHHHHHh-hccccccchhcCCccccCHHHHHHHHHHHHHHhhhhh---hhHHHHHHHHHhhhheecc
Confidence 99999999999999999988 9999999999999989999999999999999987654 4789999999999999999
Q ss_pred cccCchhHHHHHHHHHHHhCCCCCeeccccccccccCCCCc
Q psy1740 218 FIDGNGRTSRLLMNLILMQAGFPPVIIPKHERHTIKSTPGT 258 (505)
Q Consensus 218 F~DGNGRtaRLl~n~~L~~~G~~p~~i~~~~r~~Yy~aL~~ 258 (505)
|.+||||..|++...+|...|++ +.+...++..|.+++..
T Consensus 132 FreGNGRs~rif~d~ll~~~g~~-idW~~~~~~~~~~a~~~ 171 (201)
T COG2184 132 FREGNGRSTRIFLDLLLKELGKA-IDWQSISKEAYLQALRR 171 (201)
T ss_pred ccCCCcHHHHHHHHHHHHHhCcc-cCCccccHHHHHHHHHh
Confidence 99999999999999999977764 46666666777776654
No 9
>TIGR01550 DOC_P1 death-on-curing family protein. A similar region, with K replaced by G, is found in the huntingtin interacting protein (HYPE) family.
Probab=99.08 E-value=2.7e-10 Score=100.80 Aligned_cols=90 Identities=21% Similarity=0.287 Sum_probs=69.1
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCCccccccceeccccCCCCCCcHHHHHHHHHHHhhccccCCCHHHHHHHHHHHhcccee
Q psy1740 138 ITVADLLEIHKRVLGFADPLASGMFRRTQVFVGGHIPPTPPHIIPLMDEFIAWLNSDVALRMHPVRFAAIAHYKLVHIHP 217 (505)
Q Consensus 138 ls~~~i~~lH~~L~~~~~~~~~G~~R~~~v~ig~~~pp~p~~v~~~m~~l~~~~~~~~~~~~~pi~~Aa~~h~~f~~IHP 217 (505)
+|.+.|..+|..++....+. +.++| ++..+...++...+.+.... ..+..++||.+++.++..||
T Consensus 2 ls~~~i~~ih~~~i~~~gg~-~~Gi~------------d~~~L~sal~~p~~~~~y~~--~~~i~~kAa~l~~~l~~~Hp 66 (121)
T TIGR01550 2 ISVEEIIAIHDANIERDGGL-EFGMS------------NPGRAEATIERVSERLSYEE--ITDIFEVSAVLLYALIRSHP 66 (121)
T ss_pred CCHHHHHHHHHHHHHHcCCC-ccCcc------------ChhhHHHHHHhHHHHHhcCC--CCCHHHHHHHHHHHHHHhCC
Confidence 68999999999998543221 21233 34556666666666443222 35789999999999999999
Q ss_pred cccCchhHHHHHHHHHHHhCCCCCe
Q psy1740 218 FIDGNGRTSRLLMNLILMQAGFPPV 242 (505)
Q Consensus 218 F~DGNGRtaRLl~n~~L~~~G~~p~ 242 (505)
|.|||+|||.++++.+|..+|+...
T Consensus 67 F~DGNKRta~~~~~~fL~~NG~~l~ 91 (121)
T TIGR01550 67 FNNANKRTALNALLLFLELNGYEFT 91 (121)
T ss_pred CccccHHHHHHHHHHHHHHCCcCCC
Confidence 9999999999999999999999864
No 10
>COG3177 Fic family protein [Function unknown]
Probab=98.22 E-value=6e-06 Score=86.09 Aligned_cols=107 Identities=19% Similarity=0.100 Sum_probs=78.0
Q ss_pred HhhhhcccccCCcCCHHHHHHHHhhccCCCCCchhHHHHHhCHHHHHHHHHHHHhcc-----------hhhhcc--cccC
Q psy1740 382 QHIYHTVGIEGNSMSLAQTRSIVETRMAIGGKSIAEHNEILGLDLALKYINNTLVNS-----------YYQVLE--EANR 448 (505)
Q Consensus 382 ~~t~~s~~iEGntlt~~et~~il~~g~~~~g~~~~e~~e~~n~~~a~~~~~~~~~~~-----------~~~l~~--~~~~ 448 (505)
..++.|++||||++|+.++..+ ..+++.++++.+++.|++|+..|+.|..+.+..+ |..++. ..+.
T Consensus 54 ~~~~~Ss~IEg~~~~~~~~~~~-~~~~~~~~~~~~~~~e~~n~~~a~~~~~e~l~~~~~~s~~~i~~lh~~l~~~~~~~~ 132 (348)
T COG3177 54 KLAHSSSAIEGNTLTLEDLRSS-LEGITGAGKPTDDIKEVLNYERADFYGLEHLDAGEPFSWLDILKLHAILTSGLLLEK 132 (348)
T ss_pred HHHhhhhhccCccCCHHHHHHh-hhcccccccchhHHHHHHHHHHhhhhhhhcccccCCCCHHHHHHHHHHHhCcccccc
Confidence 3455599999999999999998 5589999999999999999999999998887655 566665 4466
Q ss_pred CccccccceeccCCccccCCCCcccchhchHHHhhhhhcCc
Q psy1740 449 GDIRPFVRFIAPVTIKFSRRPTEATFGRSSASLLNARTRPS 489 (505)
Q Consensus 449 G~~r~~~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 489 (505)
|.++...+.+...++....+||..-.....|..+.+|++-+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~Pp~~~~~~~~m~~~~~~~~~~ 173 (348)
T COG3177 133 GKGRQDVVGIIDSGGVHFHAPPSSQLVEELMEELIGFLQSN 173 (348)
T ss_pred ccccccccceecCCCceeeCCChHHHHHHHHHHHHHHHHcc
Confidence 77754434443333323333444445556777788888765
No 11
>COG3654 Doc Prophage maintenance system killer protein [General function prediction only]
Probab=98.10 E-value=1.5e-05 Score=70.45 Aligned_cols=89 Identities=20% Similarity=0.304 Sum_probs=67.2
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCCccccccceeccccCCCCCCcHHHHHHHHHHHhhccccCCCHHHHHHHHHHHhcccee
Q psy1740 138 ITVADLLEIHKRVLGFADPLASGMFRRTQVFVGGHIPPTPPHIIPLMDEFIAWLNSDVALRMHPVRFAAIAHYKLVHIHP 217 (505)
Q Consensus 138 ls~~~i~~lH~~L~~~~~~~~~G~~R~~~v~ig~~~pp~p~~v~~~m~~l~~~~~~~~~~~~~pi~~Aa~~h~~f~~IHP 217 (505)
.|...|.++|...+....+. .| . ++...+...|.....++.... ..+.++.||...+.+..-||
T Consensus 6 ~~~~~Ii~~h~~~l~~~~g~-~g-i------------~d~~~l~~al~r~~~~~~ye~--~~dvfelAA~~~~~l~knH~ 69 (132)
T COG3654 6 ETFVEIIELHAQILRVEGGI-KG-I------------RDSGLLESALERIQNKFGYEG--YPDVFELAAAYFVALIKNHA 69 (132)
T ss_pred HhHHHHHHHHHHHhccCCCC-CC-C------------CChhhHHHHHhhhhhhhhcCC--CCcHHHHHHHHHHHHHhcCC
Confidence 45678888899888542111 12 1 234456677777666665543 35789999999999999999
Q ss_pred cccCchhHHHHHHHHHHHhCCCCCe
Q psy1740 218 FIDGNGRTSRLLMNLILMQAGFPPV 242 (505)
Q Consensus 218 F~DGNGRtaRLl~n~~L~~~G~~p~ 242 (505)
|.|||+|||-..+..+|..+||...
T Consensus 70 F~dgNKRtal~a~~~FL~lNGy~l~ 94 (132)
T COG3654 70 FADGNKRTALAAALLFLLLNGYELT 94 (132)
T ss_pred CCCccHHHHHHHHHHHHHhCCeeee
Confidence 9999999999999999999999653
No 12
>TIGR02613 mob_myst_B mobile mystery protein B. Members of this protein family, which we designate mobile mystery protein B, are found in mobization-related contexts more often than not, including within a CRISPR-associated gene region in Geobacter sulfurreducens PCA, and on plasmids in Agrobacterium tumefaciens and Coxiella burnetii, always together with mobile mystery protein A (TIGR02612), a member of the family of helix-turn-helix DNA binding proteins (pfam01381). This protein is encoded by the downstream member of the gene pair and belongs to the Fic protein family (pfam02661), where Fic (filamentation induced by cAMP) is a regulator of cell division. The characteristics of having a two-gene operon in a varied context and often on plasmids, with one member affecting cell division and the other able to bind DNA, suggests similarity to addiction modules.
Probab=98.00 E-value=1.1e-05 Score=76.72 Aligned_cols=89 Identities=8% Similarity=0.025 Sum_probs=63.7
Q ss_pred CcCCHHHHHHHHhhccCCCCCchhHHHHHhCHHHHHHHHHHHHhcc------------hhhhcc--cccCCcccccccee
Q psy1740 393 NSMSLAQTRSIVETRMAIGGKSIAEHNEILGLDLALKYINNTLVNS------------YYQVLE--EANRGDIRPFVRFI 458 (505)
Q Consensus 393 ntlt~~et~~il~~g~~~~g~~~~e~~e~~n~~~a~~~~~~~~~~~------------~~~l~~--~~~~G~~r~~~~~i 458 (505)
..||..||+.|++.|++..++ +|.+|+.||++|++|+.+.+..+ |..++. ...+|+||+++|.|
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~--~de~e~~~~~~A~~~~~~~~~~~~~~l~~~~i~~lH~~l~~~~~~~aG~~R~~~~~i 79 (186)
T TIGR02613 2 TPLDPEELEGLLPGHITTRGE--LDEFEQANIAEGILWAEGRRRKKKDILSETFLRRLHRRMFGDVWRWAGDFRTTQKNI 79 (186)
T ss_pred CCCCHHHHHHHhhcCCCCccc--chHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHcCCcccCCccccCCccc
Confidence 469999999999966775444 69999999999999998887541 666665 33589999999999
Q ss_pred ccCCccccCCCCcccchhchHHHhhhhhcCc
Q psy1740 459 APVTIKFSRRPTEATFGRSSASLLNARTRPS 489 (505)
Q Consensus 459 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 489 (505)
. . +|...+......++-++.|++..
T Consensus 80 g-~-----~~~~ip~~~~~l~~~l~~~~~~~ 104 (186)
T TIGR02613 80 G-V-----SPLQIPSELAILLDDVRYWLQNG 104 (186)
T ss_pred C-C-----ChhhcHHHHHHHHHHHHHHHhcC
Confidence 2 1 12222233445556667777653
No 13
>PF13784 Fic_N: Fic/DOC family N-terminal; PDB: 3EQX_A.
Probab=97.98 E-value=3.1e-05 Score=64.05 Aligned_cols=72 Identities=15% Similarity=0.141 Sum_probs=43.4
Q ss_pred HHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHhccccCCCCchhHHHHHHHHHHHHHHHH
Q psy1740 51 IDEKRDQVSSIPESDPALCKAKKESYFQHIYHTVGIEGNSMSLAQTRSIVETRMAIGGKSIAEHNEILGLDLALKYINN 129 (505)
Q Consensus 51 i~~~r~~l~~~p~~~~~l~~l~~e~~~~~i~~S~~IEGn~lT~~et~~lle~~~~~~~k~~~d~~ei~n~~~A~~~i~~ 129 (505)
|.++++....+|.+...++. ...+....|++|||+..|.+|+...-. ........+.+||+||.+|+++..+
T Consensus 12 Lg~L~g~~~~lpn~~~li~~----l~~~EA~~SS~IEGt~~T~del~~~~~---~~~~~~~~d~~EVlnY~~Al~~g~~ 83 (84)
T PF13784_consen 12 LGRLDGMLRLLPNPELLIRP----LVRQEAVLSSQIEGTQTTLDELLRAEA---DEEPEARDDVKEVLNYREALEYGFE 83 (84)
T ss_dssp HHHHHHHHHH-S-HHHHHHH----HHHHHHHHHHHHTT----HHHHHHCTT-----TT-S-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHhCCCHHHHHHH----HHHHHHHHHHhhcCcccCHHHHHHHHh---cccCCCChhHHHHHHHHHHHHHHhh
Confidence 66666777778976666653 233344489999999999999644322 1111145789999999999998754
No 14
>PF13776 DUF4172: Domain of unknown function (DUF4172)
Probab=94.17 E-value=0.21 Score=41.10 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHhc
Q psy1740 70 KAKKESYFQHIYHTVGIEGNSMSLAQTRSIVETR 103 (505)
Q Consensus 70 ~l~~e~~~~~i~~S~~IEGn~lT~~et~~lle~~ 103 (505)
...-+.+.+.+..|++|||..+..++|++-+...
T Consensus 46 ~~~l~~l~~e~v~SS~IEGE~Ln~~sVrSSiarr 79 (82)
T PF13776_consen 46 EAILDTLTAEIVKSSAIEGERLNRDSVRSSIARR 79 (82)
T ss_pred HHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHH
Confidence 3444677788999999999999999999987643
No 15
>PF13784 Fic_N: Fic/DOC family N-terminal; PDB: 3EQX_A.
Probab=80.64 E-value=3.8 Score=33.80 Aligned_cols=48 Identities=21% Similarity=0.229 Sum_probs=30.2
Q ss_pred HhhhhcccccCCcCCHHHHHHHHhhccCCCCCchhHHHHHhCHHHHHHHHH
Q psy1740 382 QHIYHTVGIEGNSMSLAQTRSIVETRMAIGGKSIAEHNEILGLDLALKYIN 432 (505)
Q Consensus 382 ~~t~~s~~iEGntlt~~et~~il~~g~~~~g~~~~e~~e~~n~~~a~~~~~ 432 (505)
+=.-.|+.|||-..|+.|. +..........-.|..||+|+.+|++|=.
T Consensus 35 ~EA~~SS~IEGt~~T~del---~~~~~~~~~~~~~d~~EVlnY~~Al~~g~ 82 (84)
T PF13784_consen 35 QEAVLSSQIEGTQTTLDEL---LRAEADEEPEARDDVKEVLNYREALEYGF 82 (84)
T ss_dssp HHHHHHHHHTT----HHHH---HHCTT--TT-S-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCcccCHHHH---HHHHhcccCCCChhHHHHHHHHHHHHHHh
Confidence 3477899999999998875 33222222226789999999999999854
No 16
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=58.78 E-value=22 Score=35.09 Aligned_cols=98 Identities=27% Similarity=0.369 Sum_probs=66.0
Q ss_pred cccCchhHHHHHHHHHHHhCCCCCeeccccccccccCCCCcccchhccHHHHHHHHhcCCHHHHHHHHHHHHHhCCCChh
Q psy1740 218 FIDGNGRTSRLLMNLILMQAGFPPVIIPKHERHTIKSTPGTNIEALGTISAAIEMKKMGKIDKALKLFEHAFAIAPHNPD 297 (505)
Q Consensus 218 F~DGNGRtaRLl~n~~L~~~G~~p~~i~~~~r~~Yy~aL~~~~e~~~~l~a~i~~~~~g~~~~~~~~f~~~~~~~~~~pd 297 (505)
+.-||-+.|+--+..-|... |-+ |.. --+-|.+ +...|+.+.+.+.|.+++.+++.+-|
T Consensus 46 L~~gd~~~A~~nlekAL~~D---Ps~--------~~a---------~~~~A~~-Yq~~Ge~~~A~e~YrkAlsl~p~~Gd 104 (250)
T COG3063 46 LQQGDYAQAKKNLEKALEHD---PSY--------YLA---------HLVRAHY-YQKLGENDLADESYRKALSLAPNNGD 104 (250)
T ss_pred HHCCCHHHHHHHHHHHHHhC---ccc--------HHH---------HHHHHHH-HHHcCChhhHHHHHHHHHhcCCCccc
Confidence 56788888887776666544 221 111 1122333 66789999999999999999999999
Q ss_pred HHhHhhhhhhhccccceechhhHHHHH--hcCCcchHHHHHh
Q psy1740 298 VLNAYGEFIEETQSDIITADKMYFKAL--ISYPEHGQALVNR 337 (505)
Q Consensus 298 vl~~~r~~~~~~~~~vv~~d~~~~~al--~~~p~~~~al~~~ 337 (505)
|+|.||-|+=....+ .++.+.+.+|+ ..++.......+.
T Consensus 105 VLNNYG~FLC~qg~~-~eA~q~F~~Al~~P~Y~~~s~t~eN~ 145 (250)
T COG3063 105 VLNNYGAFLCAQGRP-EEAMQQFERALADPAYGEPSDTLENL 145 (250)
T ss_pred hhhhhhHHHHhCCCh-HHHHHHHHHHHhCCCCCCcchhhhhh
Confidence 999999999555544 35555554554 5555555555554
No 17
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=58.20 E-value=19 Score=25.26 Aligned_cols=32 Identities=28% Similarity=0.637 Sum_probs=27.4
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCChhHHhHhh
Q psy1740 272 MKKMGKIDKALKLFEHAFAIAPHNPDVLNAYG 303 (505)
Q Consensus 272 ~~~~g~~~~~~~~f~~~~~~~~~~pdvl~~~r 303 (505)
+...|+++.+.+.|.+++...|.++++...+.
T Consensus 11 ~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 11 YRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 66899999999999999999999988765443
No 18
>PF11433 DUF3198: Protein of unknown function (DUF3198); InterPro: IPR024504 This domain is found at the C-terminal of a family of archaeal proteins annotated as membrane proteins.; PDB: 1X9B_A.
Probab=57.01 E-value=46 Score=24.37 Aligned_cols=47 Identities=13% Similarity=0.308 Sum_probs=36.8
Q ss_pred hhhHHHHHhcCCcchHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHh
Q psy1740 317 DKMYFKALISYPEHGQALVNRQRTALVVEELDRDFLRKIDEKRDQVS 363 (505)
Q Consensus 317 d~~~~~al~~~p~~~~al~~~~rt~~l~eeld~~~L~~iD~~k~~l~ 363 (505)
|+..|..++..+.-..++.++.....|...++..+..+++++|+++.
T Consensus 3 d~~~Fe~~InS~SK~~Fv~nL~ELE~is~rlg~~Y~~~LeeaK~kWk 49 (51)
T PF11433_consen 3 DRIKFESYINSESKSVFVRNLTELERISKRLGKSYQIRLEEAKEKWK 49 (51)
T ss_dssp HHHHHHHHHHS--HHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHH-
T ss_pred cHHHHHHHhCCccHHHHHHhHHHHHHHHHHHchHHHHHHHHHHHhhc
Confidence 45567788888888888988888888899999999999999998874
No 19
>KOG4626|consensus
Probab=54.88 E-value=29 Score=38.98 Aligned_cols=65 Identities=26% Similarity=0.441 Sum_probs=47.4
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCChhHHhHhhhhhhhccccceechhhHHHHHhcCCcchHHHHHh
Q psy1740 272 MKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQALVNR 337 (505)
Q Consensus 272 ~~~~g~~~~~~~~f~~~~~~~~~~pdvl~~~r~~~~~~~~~vv~~d~~~~~al~~~p~~~~al~~~ 337 (505)
++++|.++.+++.|.+++.+.|..||.-+.+...+++. ..|..+.+.|-+++...|.|..++.++
T Consensus 296 YyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~-G~V~ea~~cYnkaL~l~p~hadam~NL 360 (966)
T KOG4626|consen 296 YYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDK-GSVTEAVDCYNKALRLCPNHADAMNNL 360 (966)
T ss_pred EeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhc-cchHHHHHHHHHHHHhCCccHHHHHHH
Confidence 67788888888888888888888887665555555433 455566667777887788888877776
No 20
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=50.90 E-value=39 Score=34.42 Aligned_cols=95 Identities=23% Similarity=0.313 Sum_probs=65.1
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCChhHHhHhhhhhhhccccceec--hhhHHHHHhcCCcchHHHHHhHHHHHHHHHhhH
Q psy1740 272 MKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITA--DKMYFKALISYPEHGQALVNRQRTALVVEELDR 349 (505)
Q Consensus 272 ~~~~g~~~~~~~~f~~~~~~~~~~pdvl~~~r~~~~~~~~~vv~~--d~~~~~al~~~p~~~~al~~~~rt~~l~eeld~ 349 (505)
+...|+.+.++..|.+++++++.+|+++..|.+.+.......++. +.+.-+++...|++..++.-.....- + +.
T Consensus 166 ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~af--e--~g 241 (287)
T COG4235 166 YMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAF--E--QG 241 (287)
T ss_pred HHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHH--H--cc
Confidence 446789999999999999999999999999999886666677775 45656677777877776655532211 1 11
Q ss_pred HHHHHHHHHHHHHhcCCCCCH
Q psy1740 350 DFLRKIDEKRDQVSSIPESDP 370 (505)
Q Consensus 350 ~~L~~iD~~k~~l~~~rpl~~ 370 (505)
++=..+..-..-|+..|+.++
T Consensus 242 ~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 242 DYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred cHHHHHHHHHHHHhcCCCCCc
Confidence 333333444445556676665
No 21
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=50.13 E-value=68 Score=28.68 Aligned_cols=74 Identities=14% Similarity=0.183 Sum_probs=44.9
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCChhHHhHhhhhhhhccccceechhhHHHHHhcCCcchHHHHHhHHHHHHHHH
Q psy1740 272 MKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQALVNRQRTALVVEE 346 (505)
Q Consensus 272 ~~~~g~~~~~~~~f~~~~~~~~~~pdvl~~~r~~~~~~~~~vv~~d~~~~~al~~~p~~~~al~~~~rt~~l~ee 346 (505)
+...|+++.+++.|..++.+.+.+++.....+......+.. -.+-..+..++-..|....+...+..+....++
T Consensus 68 ~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~-~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~~ 141 (144)
T PRK15359 68 WMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEP-GLAREAFQTAIKMSYADASWSEIRQNAQIMVDT 141 (144)
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 55678888888888888888888888776555544332222 122233444555666666666666555444433
No 22
>PF02661 Fic: Fic/DOC family; InterPro: IPR003812 This entry contains the Fic (filamentation induced by cAMP) protein and doc (death on curing) protein. The Fic protein is involved in cell division and is suggested to be involved in the synthesis of PAB or folate, indicating that the Fic protein and cAMP are involved in a regulatory mechanism of cell division via folate metabolism []. This family contains a central conserved motif HPFXXGNG in most members. The exact molecular function of these proteins is uncertain. P1 lysogens of Escherichia coli carry the prophage as a stable low copy number plasmid. The frequency with which viable cells cured of prophage are produced is about 10(-5) per cell per generation []. A significant part of this remarkable stability can be attributed to a plasmid-encoded mechanism that causes death of cells that have lost P1 []. In other words, the lysogenic cells appear to be addicted to the presence of the prophage. The plasmid withdrawal response depends on a gene named doc (death on curing) that is represented by this family.; PDB: 3SHG_A 3N3V_A 3N3U_A 2F6S_B 2JK8_B 2VZA_D 2VY3_A 3LET_B 3EQX_A 3SE5_D ....
Probab=45.78 E-value=8.9 Score=31.32 Aligned_cols=45 Identities=13% Similarity=-0.084 Sum_probs=27.4
Q ss_pred hhhhcc--cccCCccccccceeccCCccccCCCCcccchhchHHHhhhhhc
Q psy1740 439 YYQVLE--EANRGDIRPFVRFIAPVTIKFSRRPTEATFGRSSASLLNARTR 487 (505)
Q Consensus 439 ~~~l~~--~~~~G~~r~~~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 487 (505)
|..+++ ...+|+||+.++.+.+ +.+.+++|. .....++-+-.|++
T Consensus 11 H~~l~~~~~~~~G~~R~~~~~~~~--~~~~~~~~~--~i~~~l~~~~~~~~ 57 (97)
T PF02661_consen 11 HRILFRGLYDWAGEYRTSNVGISG--GSYIPPPPE--EIPAYLEELFDWLN 57 (97)
T ss_dssp HHHHHTTTBTTTTSTCSSTESTEE--TTEEHSHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHCCCcccCCccCCCcccccc--eeeeCCCcc--chHHHHHHHHHHhh
Confidence 667766 3367999999884432 345555555 44445555555555
No 23
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=43.97 E-value=36 Score=21.68 Aligned_cols=23 Identities=26% Similarity=0.665 Sum_probs=19.3
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCC
Q psy1740 272 MKKMGKIDKALKLFEHAFAIAPH 294 (505)
Q Consensus 272 ~~~~g~~~~~~~~f~~~~~~~~~ 294 (505)
+...|+++++++.|.+++.+.|.
T Consensus 11 ~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 11 YYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHhCCHHHHHHHHHHHHHHCcC
Confidence 67899999999999999987664
No 24
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=41.25 E-value=55 Score=24.60 Aligned_cols=36 Identities=22% Similarity=0.398 Sum_probs=29.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCChhHHhHhhhhh
Q psy1740 271 EMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFI 306 (505)
Q Consensus 271 ~~~~~g~~~~~~~~f~~~~~~~~~~pdvl~~~r~~~ 306 (505)
.+...|+++++++.|..++.+.+.++.+....+...
T Consensus 12 ~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~ 47 (69)
T PF13414_consen 12 IYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAY 47 (69)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 377899999999999999999988888776555544
No 25
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=41.11 E-value=51 Score=24.66 Aligned_cols=34 Identities=29% Similarity=0.462 Sum_probs=28.8
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCChhHHhHhhhhh
Q psy1740 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFI 306 (505)
Q Consensus 273 ~~~g~~~~~~~~f~~~~~~~~~~pdvl~~~r~~~ 306 (505)
.+.|+++.+++.|..++...|.++++...+....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 35 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCY 35 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4679999999999999999999998887666655
No 26
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=40.54 E-value=2.3e+02 Score=24.19 Aligned_cols=73 Identities=8% Similarity=0.232 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHHhhhhcccccCCcCCHHHHHHHHhhccCCCCCchhHHHHHhCHHHH
Q psy1740 351 FLRKIDEKRDQVSSIPE---SDPALCKAKKESYFQHIYHTVGIEGNSMSLAQTRSIVETRMAIGGKSIAEHNEILGLDLA 427 (505)
Q Consensus 351 ~L~~iD~~k~~l~~~rp---l~~~l~~~lre~~~~~t~~s~~iEGntlt~~et~~il~~g~~~~g~~~~e~~e~~n~~~a 427 (505)
+-..|+.+|+++.++|. -+.....+++. -.+|.-+|..|.+.||-+|-. --+|-..+.++++++
T Consensus 10 w~aEYe~LKEEi~~l~~~~~~~~e~l~~i~r----------~f~g~lv~~kEi~~ilG~~~~-i~Rt~~Qvv~~l~RR-- 76 (99)
T PF13758_consen 10 WEAEYEGLKEEIEALPEDDDATREDLLRIRR----------DFGGSLVTEKEIKEILGEGQG-ITRTREQVVDVLSRR-- 76 (99)
T ss_pred HHHHHHHHHHHHHhccccCCCCHHHHHHHHH----------hcCcccccHHHHHHHhCCCCC-CCcCHHHHHHHHHHH--
Confidence 34578899999999954 23333333333 356999999999999965432 138899999998876
Q ss_pred HHHHHHHHh
Q psy1740 428 LKYINNTLV 436 (505)
Q Consensus 428 ~~~~~~~~~ 436 (505)
++||.+.+.
T Consensus 77 iDYV~~Ni~ 85 (99)
T PF13758_consen 77 IDYVQQNIE 85 (99)
T ss_pred HHHHHHHHH
Confidence 788888764
No 27
>KOG4626|consensus
Probab=40.40 E-value=1.5e+02 Score=33.56 Aligned_cols=65 Identities=29% Similarity=0.495 Sum_probs=49.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCChhHHh----HhhhhhhhccccceechhhHHHHHhcCCcchHHHHHhHH
Q psy1740 270 IEMKKMGKIDKALKLFEHAFAIAPHNPDVLN----AYGEFIEETQSDIITADKMYFKALISYPEHGQALVNRQR 339 (505)
Q Consensus 270 i~~~~~g~~~~~~~~f~~~~~~~~~~pdvl~----~~r~~~~~~~~~vv~~d~~~~~al~~~p~~~~al~~~~r 339 (505)
..+.+.|++..+.++|.++++..+.++|.++ .|||+.. +-.+-+.|.+++-..|+.++|-.++.-
T Consensus 328 nALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~-----~e~A~~ly~~al~v~p~~aaa~nNLa~ 396 (966)
T KOG4626|consen 328 NALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGK-----IEEATRLYLKALEVFPEFAAAHNNLAS 396 (966)
T ss_pred HHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcc-----chHHHHHHHHHHhhChhhhhhhhhHHH
Confidence 4577889999999999999999999999774 4555432 122345777888888988887777653
No 28
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=35.48 E-value=43 Score=21.56 Aligned_cols=23 Identities=22% Similarity=0.595 Sum_probs=19.1
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCC
Q psy1740 272 MKKMGKIDKALKLFEHAFAIAPH 294 (505)
Q Consensus 272 ~~~~g~~~~~~~~f~~~~~~~~~ 294 (505)
+...|+++++++.|++++.+.|.
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 11 YFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHhCCchHHHHHHHHHHHHCcC
Confidence 67899999999999999987653
No 29
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=34.01 E-value=78 Score=23.69 Aligned_cols=31 Identities=29% Similarity=0.434 Sum_probs=25.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCChhHH
Q psy1740 269 AIEMKKMGKIDKALKLFEHAFAIAPHNPDVL 299 (505)
Q Consensus 269 ~i~~~~~g~~~~~~~~f~~~~~~~~~~pdvl 299 (505)
++..++.|+|++++++....+.++|.+....
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 3568899999999999999999999887654
No 30
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=33.11 E-value=78 Score=23.52 Aligned_cols=37 Identities=27% Similarity=0.521 Sum_probs=30.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCChhHHhHhhhhhh
Q psy1740 271 EMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIE 307 (505)
Q Consensus 271 ~~~~~g~~~~~~~~f~~~~~~~~~~pdvl~~~r~~~~ 307 (505)
.+...|+++.+++.|...+...|.+++....++....
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~ 42 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILY 42 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3778999999999999999988888887776666553
No 31
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=31.71 E-value=32 Score=26.00 Aligned_cols=24 Identities=21% Similarity=0.058 Sum_probs=19.8
Q ss_pred hhhhhhHhhhhCCCCccccccccc
Q psy1740 12 CLEEDLLALISYPEHGQALVNRQR 35 (505)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~l~~~~~ 35 (505)
|++.|++||..+|++...+.+...
T Consensus 22 A~~~~~~ai~~~p~~~~~~~~~g~ 45 (69)
T PF13414_consen 22 AIEYFEKAIELDPNNAEAYYNLGL 45 (69)
T ss_dssp HHHHHHHHHHHSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 678999999999999887777543
No 32
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=31.37 E-value=18 Score=24.17 Aligned_cols=18 Identities=22% Similarity=0.093 Sum_probs=15.4
Q ss_pred hhhHhhhhCCCCcccccc
Q psy1740 15 EDLLALISYPEHGQALVN 32 (505)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~ 32 (505)
+|+|||..+|++..+.-|
T Consensus 1 ~y~kAie~~P~n~~a~~n 18 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNN 18 (34)
T ss_pred ChHHHHHHCCCCHHHHHH
Confidence 589999999999777666
No 33
>PF10652 DUF2480: Protein of unknown function (DUF2480); InterPro: IPR018914 All the members of this family are uncharacterised proteins, but the environment in which they are found on the bacterial genome suggests a function as a glucose-6-phosphate isomerase (5.3.1.9 from EC). This could not, however, be confirmed.
Probab=27.24 E-value=66 Score=29.92 Aligned_cols=96 Identities=15% Similarity=0.121 Sum_probs=55.4
Q ss_pred HHHHHhhccCCCCCchhHHHHHhCHHH-----------------HHHHHHHHHhcc--------------hhhhc----c
Q psy1740 400 TRSIVETRMAIGGKSIAEHNEILGLDL-----------------ALKYINNTLVNS--------------YYQVL----E 444 (505)
Q Consensus 400 t~~il~~g~~~~g~~~~e~~e~~n~~~-----------------a~~~~~~~~~~~--------------~~~l~----~ 444 (505)
.+.-|..|+....|..|+...-.+-.+ +|.||+=...=. +..+. .
T Consensus 33 ik~~L~~GliLkEKdFR~~lk~~DWsqY~~~~Vai~CStDAIvP~WAyMLl~~~L~p~A~~vv~G~~e~le~~l~~~~i~ 112 (167)
T PF10652_consen 33 IKDWLFEGLILKEKDFREFLKEHDWSQYQDKYVAIYCSTDAIVPAWAYMLLASKLQPYAKKVVFGSLEDLETSLYQEAIN 112 (167)
T ss_pred cHHHHhhhhhhhhHHHHHHHHhcCHHHhCCcEEEEEcccceehhhhHHHHHHHhhhhhhhheeeCCHHHHHHHHHHHHHH
Confidence 334455598888998988887766544 567766442111 11111 1
Q ss_pred cccCCccccccceeccCCccccCCCCcccchhchHHHhhhhhcCccc--ccCCCCCCCCCC
Q psy1740 445 EANRGDIRPFVRFIAPVTIKFSRRPTEATFGRSSASLLNARTRPSIC--SYGPHPSTLPLY 503 (505)
Q Consensus 445 ~~~~G~~r~~~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 503 (505)
..+--.|++.+|.|.|.+-. ++|..--+. +...+.|-.- -||---||.|+|
T Consensus 113 ~~D~s~~~dk~ViiKGCs~k-------~vP~~AY~~-~~~kL~pvakSlMyGEaCStVPly 165 (167)
T PF10652_consen 113 KLDLSEYKDKPVIIKGCSDK-------PVPENAYVE-ATQKLQPVAKSLMYGEACSTVPLY 165 (167)
T ss_pred hhCHHHHCCCcEEEECCCCC-------CCCHHHHHH-HHHHHHHHHHHHhcCCCcCcCCCc
Confidence 44567899999999988421 222222222 2222333222 277777899998
No 34
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=27.06 E-value=5.4e+02 Score=24.27 Aligned_cols=67 Identities=18% Similarity=0.119 Sum_probs=47.0
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCChhHHhHhhhhhhhccccc--eechhhHHHHHhcCCcchHHHHHhH
Q psy1740 272 MKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDI--ITADKMYFKALISYPEHGQALVNRQ 338 (505)
Q Consensus 272 ~~~~g~~~~~~~~f~~~~~~~~~~pdvl~~~r~~~~~~~~~v--v~~d~~~~~al~~~p~~~~al~~~~ 338 (505)
+...|+++.+++.|.+++.+.+.++++...+...+-...... -.+...+-+++-..|.+..++..+.
T Consensus 83 ~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA 151 (198)
T PRK10370 83 YLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLA 151 (198)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHH
Confidence 447899999999999999999999999987777432111111 1234455566677787777776664
No 35
>PF13776 DUF4172: Domain of unknown function (DUF4172)
Probab=26.84 E-value=1.4e+02 Score=24.54 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=23.5
Q ss_pred HHHHhhhhcccccCCcCCHHHHHHHHhh
Q psy1740 379 SYFQHIYHTVGIEGNSMSLAQTRSIVET 406 (505)
Q Consensus 379 ~~~~~t~~s~~iEGntlt~~et~~il~~ 406 (505)
.+.+-+..|.+|||-+|...++++=+-.
T Consensus 51 ~l~~e~v~SS~IEGE~Ln~~sVrSSiar 78 (82)
T PF13776_consen 51 TLTAEIVKSSAIEGERLNRDSVRSSIAR 78 (82)
T ss_pred HHHHHHHHHHHhcccccCHHHHHHHHHH
Confidence 3577799999999999999999986653
No 36
>KOG3503|consensus
Probab=26.49 E-value=19 Score=27.43 Aligned_cols=18 Identities=22% Similarity=0.097 Sum_probs=15.1
Q ss_pred ccccCcchhhhhhhhhHh
Q psy1740 2 TCSIHPMVYFCLEEDLLA 19 (505)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~ 19 (505)
|||.||.||=-+.-|+|.
T Consensus 27 T~saHPARFSPdDKySrq 44 (64)
T KOG3503|consen 27 TLSAHPARFSPDDKYSRQ 44 (64)
T ss_pred ecccCccccCccccccce
Confidence 899999999877777764
No 37
>PRK14052 effector protein; Provisional
Probab=25.87 E-value=46 Score=34.26 Aligned_cols=71 Identities=6% Similarity=0.008 Sum_probs=40.1
Q ss_pred HHHhhhhcccccCCcCCHHHHHHHHhhccCCCCCchhHHHHHhCHHHHHHHHHHHHhcc------------hhhhcc---
Q psy1740 380 YFQHIYHTVGIEGNSMSLAQTRSIVETRMAIGGKSIAEHNEILGLDLALKYINNTLVNS------------YYQVLE--- 444 (505)
Q Consensus 380 ~~~~t~~s~~iEGntlt~~et~~il~~g~~~~g~~~~e~~e~~n~~~a~~~~~~~~~~~------------~~~l~~--- 444 (505)
+-+-.||-| |.|=...++..-+..--|-+|-...-+ -.|+.+++.++ |..++.
T Consensus 228 l~ed~~n~~---~~t~nve~AA~WI~~aStS~~n~a~~i---------t~ylkElAk~k~piISe~~IKdLHaLVm~nig 295 (387)
T PRK14052 228 LAEDAFNKN---GVTDNVERAAAWIINASTSKGNDAENI---------TALLKEYAHNGKDLLNMDNLKELHARLVPNIE 295 (387)
T ss_pred ccHhhcCcc---cccccHHHHHHHHHhcccCCCCcHHHH---------HHHHHHHHhcCCCCCCHHHHHHHHHHHhcCCC
Confidence 344455555 445556676666653444444332221 12444443322 666665
Q ss_pred ---cccCCccccccceeccCC
Q psy1740 445 ---EANRGDIRPFVRFIAPVT 462 (505)
Q Consensus 445 ---~~~~G~~r~~~~~i~~~~ 462 (505)
+.++|.||+.+|.|.|++
T Consensus 296 ~~~r~~aGsYRSs~vvIsGag 316 (387)
T PRK14052 296 RDYRGPAISGGTLPSSIGGEG 316 (387)
T ss_pred cccccCCCccccccceeccHH
Confidence 446899999999998763
No 38
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=25.77 E-value=85 Score=20.89 Aligned_cols=19 Identities=32% Similarity=0.674 Sum_probs=15.8
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q psy1740 272 MKKMGKIDKALKLFEHAFA 290 (505)
Q Consensus 272 ~~~~g~~~~~~~~f~~~~~ 290 (505)
+...|++++++++|++++.
T Consensus 9 ~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 9 YRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHCT-HHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6689999999999999765
No 39
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=25.53 E-value=84 Score=20.00 Aligned_cols=22 Identities=32% Similarity=0.741 Sum_probs=19.1
Q ss_pred HHhcCCHHHHHHHHHHHHHhCC
Q psy1740 272 MKKMGKIDKALKLFEHAFAIAP 293 (505)
Q Consensus 272 ~~~~g~~~~~~~~f~~~~~~~~ 293 (505)
+...|+++++.+.|..++.+.+
T Consensus 11 y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 11 YEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHhhCC
Confidence 5678999999999999987655
No 40
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=24.20 E-value=1.4e+02 Score=22.15 Aligned_cols=25 Identities=36% Similarity=0.764 Sum_probs=19.8
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCh
Q psy1740 272 MKKMGKIDKALKLFEHAFAIAPHNP 296 (505)
Q Consensus 272 ~~~~g~~~~~~~~f~~~~~~~~~~p 296 (505)
+...|+++.+++.|..++.+.|.+|
T Consensus 41 ~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 41 LYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 5688999999999999998777664
No 41
>TIGR00105 L31 ribosomal protein L31. This family consists exclusively of bacterial (and organellar) 50S ribosomal protein L31. In some species, such as Bacillus subtilis, this protein exists in two forms (RpmE and YtiA), one of which (RpmE) contains a pair of motifs, CXC and CXXC, for binding zinc.
Probab=22.65 E-value=42 Score=26.54 Aligned_cols=15 Identities=40% Similarity=0.961 Sum_probs=10.9
Q ss_pred cceecccCc-------hhHHHH
Q psy1740 214 HIHPFIDGN-------GRTSRL 228 (505)
Q Consensus 214 ~IHPF~DGN-------GRtaRL 228 (505)
.-|||.-|. ||+.|+
T Consensus 40 ~~HPfyTG~~~~~~~~GRv~KF 61 (68)
T TIGR00105 40 KCHPFYTGKQKIVDTGGRVDKF 61 (68)
T ss_pred CCcccCCCceEEeccCCcHHHH
Confidence 468888887 676665
No 42
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=21.45 E-value=2e+02 Score=17.47 Aligned_cols=31 Identities=32% Similarity=0.602 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHHHHhCCCChhHHhHhhhhh
Q psy1740 276 GKIDKALKLFEHAFAIAPHNPDVLNAYGEFI 306 (505)
Q Consensus 276 g~~~~~~~~f~~~~~~~~~~pdvl~~~r~~~ 306 (505)
|+.+.+.++|++++..-+..+++-..|.++.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 4667888899999887676666655555543
Done!