Query         psy1740
Match_columns 505
No_of_seqs    468 out of 2054
Neff          7.0 
Searched_HMMs 29240
Date          Fri Aug 16 21:33:09 2013
Command       hhsearch -i /work/01045/syshi/Psyhhblits/psy1740.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1740hhsearch_pdb -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3cuc_A Protein of unknown func 100.0 9.9E-41 3.4E-45  336.4  20.6  243   48-290     4-267 (291)
  2 2qc0_A Uncharacterized protein 100.0 2.8E-33 9.5E-38  291.3  17.4  225   36-290    31-266 (373)
  3 3eqx_A FIC domain containing t 100.0 1.2E-32 4.2E-37  285.8  18.5  215   51-290    42-266 (373)
  4 3n3u_A Ampylator IBPA, adenosi 100.0 3.3E-30 1.1E-34  255.3  17.8  190   61-259    83-278 (299)
  5 3shg_A VBHT; ampylation, adeny  99.9 5.4E-25 1.8E-29  210.5  13.5  138  136-289    53-194 (205)
  6 2jk8_A BEPA, putative cell fil  99.9 2.5E-25 8.6E-30  224.8   9.2  188   84-290    12-219 (302)
  7 2f6s_A Cell filamentation prot  99.9 2.7E-25 9.1E-30  212.0   8.3  132  120-259    30-161 (201)
  8 2g03_A Hypothetical protein NM  99.9 8.3E-25 2.8E-29  207.6   8.5  130  121-259    23-153 (194)
  9 3se5_A Cell filamentation prot  99.9 6.1E-24 2.1E-28  195.2   9.6  134  117-259    13-147 (164)
 10 3let_A Adenosine monophosphate  99.8 1.2E-18 4.3E-23  165.3  10.5  105  134-249   200-309 (314)
 11 3cuc_A Protein of unknown func  99.7 6.9E-17 2.3E-21  162.3  12.2  134  352-487     4-168 (291)
 12 3dd7_A DOC, death on curing pr  99.0   4E-10 1.4E-14  100.1   8.4   90  137-242     3-92  (135)
 13 2qc0_A Uncharacterized protein  98.3 5.9E-07   2E-11   93.0   6.9  104  377-487    59-177 (373)
 14 3n3u_A Ampylator IBPA, adenosi  98.1 8.9E-07   3E-11   87.8   2.5  103  375-487    91-206 (299)
 15 3eqx_A FIC domain containing t  97.6 0.00012 4.3E-09   75.5   8.0   99  381-487    64-177 (373)
 16 3se5_A Cell filamentation prot  87.5    0.42 1.5E-05   43.2   3.9   41  439-485    43-85  (164)
 17 2jk8_A BEPA, putative cell fil  84.2    0.34 1.2E-05   48.2   1.7   71  385-459     9-94  (302)
 18 2f6s_A Cell filamentation prot  79.8     1.4 4.7E-05   41.1   4.0   41  439-486    57-99  (201)
 19 2g03_A Hypothetical protein NM  75.3       2 6.9E-05   39.6   3.8   41  439-485    49-91  (194)
 20 4gco_A Protein STI-1; structur  68.3      31   0.001   28.2   9.4   68  272-340    23-90  (126)
 21 3shg_A VBHT; ampylation, adeny  60.6     4.2 0.00014   37.8   2.6   21  439-459    64-86  (205)
 22 1x9b_A Hypothetical membrane p  55.3      31  0.0011   24.4   5.6   47  317-363     5-51  (53)
 23 4ga2_A E3 SUMO-protein ligase   52.9      84  0.0029   26.1   9.6   68  272-340    41-108 (150)
 24 3gyz_A Chaperone protein IPGC;  49.4      60  0.0021   27.7   8.2   69  271-340    45-113 (151)
 25 4ga2_A E3 SUMO-protein ligase   46.9      70  0.0024   26.7   8.1   63  272-334    75-137 (150)
 26 2xcb_A PCRH, regulatory protei  45.6      58   0.002   26.6   7.3   35  272-306    62-96  (142)
 27 4gco_A Protein STI-1; structur  38.6   1E+02  0.0034   24.9   7.6   64  272-336    57-120 (126)
 28 3shg_B VBHA; ampylation, adeny  37.6      46  0.0016   24.7   4.4   39  380-420    13-51  (61)
 29 2vgx_A Chaperone SYCD; alterna  35.4      97  0.0033   25.8   7.2   34  272-305    65-98  (148)
 30 1p5q_A FKBP52, FK506-binding p  35.3 2.4E+02  0.0081   27.0  11.0   68  272-340   206-273 (336)
 31 2l6j_A TPR repeat-containing p  35.2 1.3E+02  0.0044   22.4   7.4   58  272-330    14-71  (111)
 32 1hxi_A PEX5, peroxisome target  34.7 1.7E+02  0.0058   23.2   9.8   69  270-339    25-93  (121)
 33 2xev_A YBGF; tetratricopeptide  33.9 1.1E+02  0.0037   23.7   6.9   33  272-304    49-84  (129)
 34 2vgx_A Chaperone SYCD; alterna  33.5 1.6E+02  0.0055   24.3   8.3   68  271-339    30-97  (148)
 35 3vtx_A MAMA; tetratricopeptide  31.3      98  0.0033   26.0   6.6   35  272-306    15-49  (184)
 36 3gyz_A Chaperone protein IPGC;  31.2 1.5E+02   0.005   25.1   7.7   36  272-307    80-115 (151)
 37 3urz_A Uncharacterized protein  29.1 2.6E+02  0.0088   24.3   9.3   68  272-340    64-131 (208)
 38 4gcn_A Protein STI-1; structur  28.8      74  0.0025   25.7   5.1   35  272-306    18-52  (127)
 39 1na3_A Designed protein CTPR2;  26.6 1.7E+02  0.0059   20.7   7.4   35  272-306    19-53  (91)
 40 3mkr_A Coatomer subunit epsilo  25.7 2.1E+02  0.0071   26.8   8.4   63  272-334   210-272 (291)
 41 3sz7_A HSC70 cochaperone (SGT)  25.6 2.7E+02  0.0091   22.8   8.4   66  272-338    21-86  (164)
 42 3ma5_A Tetratricopeptide repea  25.5 1.2E+02   0.004   23.2   5.5   35  272-306    17-51  (100)
 43 3upv_A Heat shock protein STI1  24.5 2.4E+02  0.0083   21.7   8.3   67  271-338    13-79  (126)
 44 1jy2_N Fibrinogen alpha chain;  23.7      91  0.0031   22.4   3.8   27  339-365    25-51  (53)
 45 2kc7_A BFR218_protein; tetratr  23.2 2.2E+02  0.0076   20.8   7.7   63  271-334     9-72  (99)
 46 3u64_A Protein TP_0956; tetrat  22.4 1.7E+02  0.0059   28.6   7.0   46  275-320   217-263 (301)
 47 3upv_A Heat shock protein STI1  22.4 2.6E+02  0.0088   21.6   7.2   35  272-306    48-82  (126)
 48 3k9i_A BH0479 protein; putativ  22.3 1.3E+02  0.0045   23.3   5.4   35  272-306    37-71  (117)
 49 3rkv_A Putative peptidylprolyl  21.6 3.3E+02   0.011   22.2   8.4   35  272-306    73-107 (162)
 50 1kt0_A FKBP51, 51 kDa FK506-bi  21.1 3.1E+02    0.01   27.6   9.1   68  272-340   327-394 (457)
 51 3q49_B STIP1 homology and U bo  20.3 2.5E+02  0.0086   21.7   6.8   66  272-338    19-84  (137)

No 1  
>3cuc_A Protein of unknown function with A FIC domain; FIC protein family, structural genomics, joint center for ST genomics, JCSG; HET: MSE; 2.71A {Bacteroides thetaiotaomicron vpi-5482}
Probab=100.00  E-value=9.9e-41  Score=336.40  Aligned_cols=243  Identities=21%  Similarity=0.357  Sum_probs=200.9

Q ss_pred             HHHHHHHHHhhhcC-CCChHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHhccccCCCCchhHHHHHHHHHHHHH
Q psy1740          48 LRKIDEKRDQVSSI-PESDPALCKAKKESYFQHIYHTVGIEGNSMSLAQTRSIVETRMAIGGKSIAEHNEILGLDLALKY  126 (505)
Q Consensus        48 L~~i~~~r~~l~~~-p~~~~~l~~l~~e~~~~~i~~S~~IEGn~lT~~et~~lle~~~~~~~k~~~d~~ei~n~~~A~~~  126 (505)
                      +.+|+++++.+... |.++..++++.+...++++|+||+|||+++|..||+.+++.+..+++++.++..|+.|+..|+++
T Consensus         4 ~~~i~~~~~~~~~~~~l~~~~~~~l~~~~~i~~~~~S~~IEG~~~t~~e~~~ll~~~~~~~~~~~~d~~ev~~~~~a~~~   83 (291)
T 3cuc_A            4 ISNIKQLYSKWKSLQPLKPEDLKRWNDKFKLEFNYNSNHLEGNTLTYGQTKLLLMFGETSGNASLKDYEEMKAHNVGLEM   83 (291)
T ss_dssp             -CHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHCCCCSSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhcCCcCCCCchhHHHHHHHHHHHHHH
Confidence            66799999998887 67888899999999999999999999999999999999987777777778899999999999999


Q ss_pred             HHHHhcccCCCCCHHHHHHHHHHHhcCCC--------------CCCCCccccccceec---c--ccCCCCCCcHHHHHHH
Q psy1740         127 INNTLVNRVGDITVADLLEIHKRVLGFAD--------------PLASGMFRRTQVFVG---G--HIPPTPPHIIPLMDEF  187 (505)
Q Consensus       127 i~~~l~~~~~~ls~~~i~~lH~~L~~~~~--------------~~~~G~~R~~~v~ig---~--~~pp~p~~v~~~m~~l  187 (505)
                      +.+.......++|.+.|+++|+.|+++..              ...+|.||+.+|+|+   |  +.||+|..|+..|++|
T Consensus        84 i~~~~~~~~~~ls~~~i~~lH~~L~~~~~~~~~~~~~G~~~~~~~~~G~~R~~~~~i~~~~g~~~~~~~p~~v~~~m~~l  163 (291)
T 3cuc_A           84 IKQEAQDKERPLTESFIRELNRTILVQDYWKNAKTPDGQDIRMQIKVGEYKSRPNSVLTATGEVFSYASPEETPAFMTSL  163 (291)
T ss_dssp             HHHHHHSTTCCCCHHHHHHHHHHHSCSCCCC---------------CCSBCSSCCCEEC--CCEECCCCTTTHHHHHHHH
T ss_pred             HHHHHhccCCCCCHHHHHHHHHHHHcCcccccccCCCCcccccccccceeeccCceEEecCCCeecCCCHHHHHHHHHHH
Confidence            98765444579999999999999997542              125899999999885   2  7788999999999999


Q ss_pred             HHHHhhcc-ccCCCHHHHHHHHHHHhccceecccCchhHHHHHHHHHHHhCCCCCeeccccccccccCCCCcccchhccH
Q psy1740         188 IAWLNSDV-ALRMHPVRFAAIAHYKLVHIHPFIDGNGRTSRLLMNLILMQAGFPPVIIPKHERHTIKSTPGTNIEALGTI  266 (505)
Q Consensus       188 ~~~~~~~~-~~~~~pi~~Aa~~h~~f~~IHPF~DGNGRtaRLl~n~~L~~~G~~p~~i~~~~r~~Yy~aL~~~~e~~~~l  266 (505)
                      ++|++... ....+|+++||.+|++|++||||.||||||||++++++|.++|+++..+..++|.+||++|..+....|++
T Consensus       164 ~~~~~~~~~~~~~~~l~~aa~~h~~f~~IHPF~DGNGRt~Rll~~~~L~~~g~~~~~i~~~~r~~Y~~aL~~~~~~~~~~  243 (291)
T 3cuc_A          164 VDWYNLEADKGILTPVELAALLHYRYIRIHPFEDGNGRIARLLVNFVLHRYGYPMIVIHSEDKSNYLNILHQCDVEAGLT  243 (291)
T ss_dssp             HHHHHHHHHHCCSCHHHHHHHHHHHHHHHCCBSSCHHHHHHHHHHHHHHHTTCCCCCCCGGGHHHHHHHHHHHHHHHCSS
T ss_pred             HHHHhhhcccccCCHHHHHHHHHHHHhhcCCCcCCChHHHHHHHHHHHHHcCCCceeccHhhHHHHHHHHHHhhhhcccc
Confidence            99998753 23479999999999999999999999999999999999999999999888999999999998653221211


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHH
Q psy1740         267 SAAIEMKKMGKIDKALKLFEHAFA  290 (505)
Q Consensus       267 ~a~i~~~~~g~~~~~~~~f~~~~~  290 (505)
                      ..--.....+++..|+++|..++.
T Consensus       244 ~~~g~~~~~~d~~~~i~~~~~~i~  267 (291)
T 3cuc_A          244 PSDGANATLNDILPFVNYLSSCLI  267 (291)
T ss_dssp             HHHHHTCCTTTTHHHHHHHHHHHH
T ss_pred             ccccccccccCHHHHHHHHHHHHH
Confidence            100001125778888888877764


No 2  
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=100.00  E-value=2.8e-33  Score=291.30  Aligned_cols=225  Identities=20%  Similarity=0.200  Sum_probs=172.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHhccccCCCCchhHH
Q psy1740          36 TALVVEELDRDFLRKIDEKRDQVSSIPESDPALCKAKKESYFQHIYHTVGIEGNSMSLAQTRSIVETRMAIGGKSIAEHN  115 (505)
Q Consensus        36 ~~~~~~~~~~~~L~~i~~~r~~l~~~p~~~~~l~~l~~e~~~~~i~~S~~IEGn~lT~~et~~lle~~~~~~~k~~~d~~  115 (505)
                      +..++.++.++    +.++.+....+|.....    .....++++++||+|||+++|..|+..++. +   .+...++.+
T Consensus        31 i~~~l~~a~~~----lg~l~~~~~~~p~~~~l----~~~l~~~ea~~Ss~IEG~~~t~~~~~~~~~-~---~~~~~~d~~   98 (373)
T 2qc0_A           31 ILKACIPARAA----LAELKQAGELLPNQGLL----INLLPLLEAQGSSEIENIVTTTDKLFQYAQ-E---DSQADPMTK   98 (373)
T ss_dssp             HHHHHHHHHHH----HHHHHHHHHHCSCHHHH----HHHHHHHHHHHHHHHTTCCCCHHHHHHHSS-C---CTTSCHHHH
T ss_pred             HHHHHHHHHHH----HHHHHHHHhcCCCHHHH----HHHHHHHHhhhhhhhcCCCCCHHHHHHHHh-c---cCCCCccHH
Confidence            44444444443    44444555556764322    234567889999999999999999977654 2   234567899


Q ss_pred             HHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHhcCCCC--CCCCccccccceec--cccCC-CCCCcHHHHHHHHHH
Q psy1740         116 EILGLDLALKYINNTLVNRVGDITVADLLEIHKRVLGFADP--LASGMFRRTQVFVG--GHIPP-TPPHIIPLMDEFIAW  190 (505)
Q Consensus       116 ei~n~~~A~~~i~~~l~~~~~~ls~~~i~~lH~~L~~~~~~--~~~G~~R~~~v~ig--~~~pp-~p~~v~~~m~~l~~~  190 (505)
                      ||.||.+|++++.+.+..  .|+|++.|+++|+.|+++...  ..+|.+|.... .|  .|+|| +|..|+..|++|++|
T Consensus        99 ev~n~~~al~~~~~~~~~--~pls~~~i~~lH~~L~~~~~~~r~~~g~~~~~~~-~g~~~~~pP~~~~~v~~~m~~l~~~  175 (373)
T 2qc0_A           99 EALRYRTALYQCFTQLSN--RPLCVTTALEICSTIKSVQMDVRKVPGTSLTNQA-TGEVIYTPPAGESVIRDLLSNWEAF  175 (373)
T ss_dssp             HHHHHHHHHHHHHHHTTT--SCSSHHHHHHHHHHHHTSCCCCCCSSCCCEECTT-TCCEEECCCCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhcCCCccccCCEEeccCC-CCceeEECCCcHHHHHHHHHHHHHH
Confidence            999999999999987643  599999999999999976421  13455554321 22  28888 789999999999999


Q ss_pred             HhhccccCCCHHHHHHHHHHHhccceecccCchhHHHHHHHHHHHhCCCCCeec------cccccccccCCCCcccchhc
Q psy1740         191 LNSDVALRMHPVRFAAIAHYKLVHIHPFIDGNGRTSRLLMNLILMQAGFPPVII------PKHERHTIKSTPGTNIEALG  264 (505)
Q Consensus       191 ~~~~~~~~~~pi~~Aa~~h~~f~~IHPF~DGNGRtaRLl~n~~L~~~G~~p~~i------~~~~r~~Yy~aL~~~~e~~~  264 (505)
                      ++...  ..||+++||.+|++|++||||.||||||||++++++|.+.|++|..+      ..++|.+||++|..      
T Consensus       176 ~~~~~--~~~pl~~aa~~h~~f~~IHPF~DGNGR~~Rll~~~~L~~~g~~~~~~~~ls~~~~~~r~~Yy~aL~~------  247 (373)
T 2qc0_A          176 LHNQD--DVDPLIKMAMAHYQFEAIHPFIDGNGRTGRVLNILYLIDQQLLSAPILYLSRYIVAHKQDYYRLLLN------  247 (373)
T ss_dssp             HHCCC--CSCHHHHHHHHHHHHHHHCCSSSCHHHHHHHHHHHHHHHTTSCSSSCCCTHHHHHHTHHHHHHHHHH------
T ss_pred             HhccC--CCCHHHHHHHHHHHHHhcCCCcCCchHHHHHHHHHHHHHCCCCCcccccHHHHHHHhHHHHHHHHHH------
Confidence            98753  47999999999999999999999999999999999999999986432      36899999998864      


Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy1740         265 TISAAIEMKKMGKIDKALKLFEHAFA  290 (505)
Q Consensus       265 ~l~a~i~~~~~g~~~~~~~~f~~~~~  290 (505)
                             ....|++..|+++|..++.
T Consensus       248 -------~~~~~d~~~~i~~~l~~i~  266 (373)
T 2qc0_A          248 -------VTTQQEWQPWIIFILNAVE  266 (373)
T ss_dssp             -------HHHHCCHHHHHHHHHHHHH
T ss_pred             -------hcccCCHHHHHHHHHHHHH
Confidence                   3446888888888887754


No 3  
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=100.00  E-value=1.2e-32  Score=285.81  Aligned_cols=215  Identities=20%  Similarity=0.201  Sum_probs=168.9

Q ss_pred             HHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHhccccCCCCchhHHHHHHHHHHHHHHHHH
Q psy1740          51 IDEKRDQVSSIPESDPALCKAKKESYFQHIYHTVGIEGNSMSLAQTRSIVETRMAIGGKSIAEHNEILGLDLALKYINNT  130 (505)
Q Consensus        51 i~~~r~~l~~~p~~~~~l~~l~~e~~~~~i~~S~~IEGn~lT~~et~~lle~~~~~~~k~~~d~~ei~n~~~A~~~i~~~  130 (505)
                      +.++++....+|.....++.    ...+++.+||+|||+.+|.+|+......    ......+..||.||.+|+.++.+.
T Consensus        42 l~~l~~~~~~~pn~~~li~~----l~~~EA~~Ss~IEG~~tt~~~l~~~~~~----~~~~~~~~~Ev~~y~~al~~~~~~  113 (373)
T 3eqx_A           42 LAELKQAGELLPNQGLLINL----LPLLEAQGSSEIENIVTTTDKLFQYAQE----DSQADPMTKEALRYRTALYQCFTQ  113 (373)
T ss_dssp             HHHHHHHHHHCSCHHHHHHH----HHHHHHHHHHHHTTCCCCHHHHHHHSSC----CTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHhCCCHHHHHHH----HHHHHHHHHHHhcCCCCCHHHHHHHhhc----cCCCChhHHHHHHHHHHHHHHHHH
Confidence            45555555567875544443    3455666999999999999997654321    223346788999999999999887


Q ss_pred             hcccCCCCCHHHHHHHHHHHhcCCC--CCCCCccccccceecc-ccCCCC-CCcHHHHHHHHHHHhhccccCCCHHHHHH
Q psy1740         131 LVNRVGDITVADLLEIHKRVLGFAD--PLASGMFRRTQVFVGG-HIPPTP-PHIIPLMDEFIAWLNSDVALRMHPVRFAA  206 (505)
Q Consensus       131 l~~~~~~ls~~~i~~lH~~L~~~~~--~~~~G~~R~~~v~ig~-~~pp~p-~~v~~~m~~l~~~~~~~~~~~~~pi~~Aa  206 (505)
                      +.  ..|+|.+.|+++|+.|+++..  ...+|.||+.++.... |.||++ ..|+.+|++|++|+|+.+  ..||+++||
T Consensus       114 ~~--~~pls~~~i~~lh~~L~~~~~~~~~~pG~~r~~~~~~~~~~~ppp~~~~i~~~m~~l~~~~~~~~--~~~pli~aa  189 (373)
T 3eqx_A          114 LS--NRPLCVTTALEICSTIKSVQMDVRKVPGTSLTNQATGEVIYTPPAGESVIRDLLSNWEAFLHNQD--DVDPLIKMA  189 (373)
T ss_dssp             TT--TSCSSHHHHHHHHHHHHTSCCCCCCSSCCCEECTTTCCEEECCCCSHHHHHHHHHHHHHHHHCCC--CSCHHHHHH
T ss_pred             Hh--cCCCCHHHHHHHHHHHHhccCcccCCCCEeCCCCCcCCeeeeCCCChHHHHHHHHHHHHHhhccc--cCCHHHHHH
Confidence            64  359999999999999987643  3468999998876543 666554 568899999999998754  479999999


Q ss_pred             HHHHHhccceecccCchhHHHHHHHHHHHhCCCCCeec------cccccccccCCCCcccchhccHHHHHHHHhcCCHHH
Q psy1740         207 IAHYKLVHIHPFIDGNGRTSRLLMNLILMQAGFPPVII------PKHERHTIKSTPGTNIEALGTISAAIEMKKMGKIDK  280 (505)
Q Consensus       207 ~~h~~f~~IHPF~DGNGRtaRLl~n~~L~~~G~~p~~i------~~~~r~~Yy~aL~~~~e~~~~l~a~i~~~~~g~~~~  280 (505)
                      ++|++|++||||.||||||||+|++++|.+.|+.+..+      +..+|.+||++|..             ....|++..
T Consensus       190 i~H~~f~~IHPF~DGNGR~~Rll~~l~L~~~g~~~~~~~~ls~~i~~~~~~Yy~~L~~-------------~~~~~d~~~  256 (373)
T 3eqx_A          190 MAHYQFEAIHPFIDGNGRTGRVLNILYLIDQQLLSAPILYLSRYIVAHKQDYYRLLLN-------------VTTQQEWQP  256 (373)
T ss_dssp             HHHHHHHHHCCSSSCHHHHHHHHHHHHHHHTTSCSSSCCCTHHHHHHTHHHHHHHHHH-------------HHHHCCHHH
T ss_pred             HHHHHHhhcCCCCCCCchHHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHH-------------hhccCCCch
Confidence            99999999999999999999999999999999865422      36899999998854             445788888


Q ss_pred             HHHHHHHHHH
Q psy1740         281 ALKLFEHAFA  290 (505)
Q Consensus       281 ~~~~f~~~~~  290 (505)
                      |+++|..++.
T Consensus       257 ~i~f~l~~i~  266 (373)
T 3eqx_A          257 WIIFILNAVE  266 (373)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888877753


No 4  
>3n3u_A Ampylator IBPA, adenosine monophosphate-protein transferase IBPA; FIC domain; 1.85A {Histophilus somni} PDB: 3n3v_A*
Probab=99.97  E-value=3.3e-30  Score=255.28  Aligned_cols=190  Identities=16%  Similarity=0.225  Sum_probs=140.6

Q ss_pred             CCCChHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHh-ccccCCCCchhHHHHHHHHHHHHHHHHHhcccCCCCC
Q psy1740          61 IPESDPALCKAKKESYFQHIYHTVGIEGNSMSLAQTRSIVET-RMAIGGKSIAEHNEILGLDLALKYINNTLVNRVGDIT  139 (505)
Q Consensus        61 ~p~~~~~l~~l~~e~~~~~i~~S~~IEGn~lT~~et~~lle~-~~~~~~k~~~d~~ei~n~~~A~~~i~~~l~~~~~~ls  139 (505)
                      .+.++....  ++..++..|.+|++|||+++|..|+.+++.+ +..+. ....++.++.   .|++......  ...++|
T Consensus        83 ~~~~~~~~~--~~~~~i~~iqssn~IEG~~ts~~qIt~AL~~~~k~vq-~~p~a~~evk---~Aie~yl~~~--~~~pLS  154 (299)
T 3n3u_A           83 FRPSVEEFS--EIQDLVKTLPKTKVIEDLSTKTNEITEALAATSKTIQ-RTPELKEQLK---TAIEDFLQNS--QGKPLT  154 (299)
T ss_dssp             CCCCHHHHH--HHHHHHHTCCCCCSCCCHHHHHHHHHHHHHHTCHHHH-HCHHHHHHHH---HHHHHHHHHH--TTSCCC
T ss_pred             CCCChHHHH--HHHHHHHHHHhhhhhhCCCCCHHHHHHHHHhcchhhc-CCHHHHHHHH---HHHHHHHHhc--cCCCCC
Confidence            344444433  4578999999999999999999999998873 11111 1122334444   5555443332  246999


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCccccccceeccccCCCCCCcHHHHHHHHHHHhhccccCCCHHHHHHHHHHHhccceecc
Q psy1740         140 VADLLEIHKRVLGFADPLASGMFRRTQVFVGGHIPPTPPHIIPLMDEFIAWLNSDVALRMHPVRFAAIAHYKLVHIHPFI  219 (505)
Q Consensus       140 ~~~i~~lH~~L~~~~~~~~~G~~R~~~v~ig~~~pp~p~~v~~~m~~l~~~~~~~~~~~~~pi~~Aa~~h~~f~~IHPF~  219 (505)
                      .+.|++||+.|+++..++ +|.||+.+|+||+..+.+|..++..|++|++|++.......+|+++||.+|++|++||||.
T Consensus       155 ~~~IkeLHr~L~~~~~~~-aG~yR~~~V~Igg~~f~PP~~i~v~M~~L~~~ln~~~~~~l~Pl~~AA~~H~~F~~IHPF~  233 (299)
T 3n3u_A          155 VQMIENLNHGLRPDEGEG-RLLYKKENLTKENAVFSSPEAAKIQLAETVDFINRAKNEGIEPSVVGALVYQRLIAYHPFA  233 (299)
T ss_dssp             HHHHHHHHHHTCTTSCTT-CCSBCSCC-----CCCCCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCBS
T ss_pred             HHHHHHHHHHHhCCCCcc-CCccccCCeeeCCeeecCCchHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHheecccc
Confidence            999999999999876554 8999999999998555455566679999999999764335799999999999999999999


Q ss_pred             cCchhHHHHHHHHHHHhCCCCCeeccc-----cccccccCCCCcc
Q psy1740         220 DGNGRTSRLLMNLILMQAGFPPVIIPK-----HERHTIKSTPGTN  259 (505)
Q Consensus       220 DGNGRtaRLl~n~~L~~~G~~p~~i~~-----~~r~~Yy~aL~~~  259 (505)
                      ||||||||++++++|+++||+|+.|..     .....|+.++..+
T Consensus       234 DGNGRtaRLL~nllL~~~G~~p~~I~~d~~e~~~i~~~~~~~~~~  278 (299)
T 3n3u_A          234 EGNGRMARVIVNKILLDAGYPAFTKFSDEFEPQIIPQTKASTKSA  278 (299)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCCCCCCCCTTTGGGGSCCSSSSSCCC
T ss_pred             CCChHHHHHHHHHHHHHCCCCceEeeCchhHHHHHHHHHHHHhcC
Confidence            999999999999999999999988753     3456677766654


No 5  
>3shg_A VBHT; ampylation, adenylylation, toxin-antitoxin complex, FIC fold transfer, transferase-protein binding complex; HET: TLA; 1.50A {Bartonella schoenbuchensis R1}
Probab=99.92  E-value=5.4e-25  Score=210.48  Aligned_cols=138  Identities=20%  Similarity=0.250  Sum_probs=116.7

Q ss_pred             CCCCHHHHHHHHHHHhcCCCCCCCCccccccceeccccCCCCCCcHHHHHHHHHHHhhccc-cCCC---HHHHHHHHHHH
Q psy1740         136 GDITVADLLEIHKRVLGFADPLASGMFRRTQVFVGGHIPPTPPHIIPLMDEFIAWLNSDVA-LRMH---PVRFAAIAHYK  211 (505)
Q Consensus       136 ~~ls~~~i~~lH~~L~~~~~~~~~G~~R~~~v~ig~~~pp~p~~v~~~m~~l~~~~~~~~~-~~~~---pi~~Aa~~h~~  211 (505)
                      .++|.+.|++||+.|++++.++ +|+||+.+|++|+..+++|..|+..|+++++|++.... ...+   .+.++|.+|++
T Consensus        53 ~~l~~~~L~~iH~~Lf~~~~~~-aG~~R~~~v~~g~~~f~pp~~I~~~m~~l~~~l~~~~~l~~~~~~~~i~~~A~~h~~  131 (205)
T 3shg_A           53 GKFDLDHMKKIHKKLFGDVYEW-AGKTRLVDIVKDNSKFAHYTQIESYAPQITQQLAREQHLRGLDANEFSQRAGYYMGE  131 (205)
T ss_dssp             CCSSHHHHHHHHHHHHTTTCTT-TTCCCSSCCEETTEECCCGGGHHHHHHHHHHHHHHTGGGTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhccccc-CCCcCcCCeecCCeecCCHHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHHHHHHH
Confidence            5899999999999999998776 99999999999997777889999999999999986531 1123   35668889999


Q ss_pred             hccceecccCchhHHHHHHHHHHHhCCCCCeeccccccccccCCCCcccchhccHHHHHHHHhcCCHHHHHHHHHHHH
Q psy1740         212 LVHIHPFIDGNGRTSRLLMNLILMQAGFPPVIIPKHERHTIKSTPGTNIEALGTISAAIEMKKMGKIDKALKLFEHAF  289 (505)
Q Consensus       212 f~~IHPF~DGNGRtaRLl~n~~L~~~G~~p~~i~~~~r~~Yy~aL~~~~e~~~~l~a~i~~~~~g~~~~~~~~f~~~~  289 (505)
                      |++||||.||||||+|++++++|.+.|++ +.|...+|.+|++|+..              ...|++....++|..++
T Consensus       132 f~~IHPF~DGNGRt~Rll~~~lL~~~G~~-i~~~~~~r~~Y~~Al~~--------------a~~gd~~pl~~l~~~~~  194 (205)
T 3shg_A          132 LNALHPFREGNGRTLREFIWQLAREAGYH-IDWDRVERQEMTRASIE--------------SYYGNSDLMSALIRRNL  194 (205)
T ss_dssp             HHHHCCSSSCHHHHHHHHHHHHHHHTTEE-ECCTTCCHHHHHHHHHH--------------HHTTCCHHHHHHHHHTE
T ss_pred             HhhccccCCCChHHHHHHHHHHHHHcCCC-CCcCcCCHHHHHHHHHH--------------HhhCCHHHHHHHHHHHh
Confidence            99999999999999999999999999997 67788899999887753              23678887777777553


No 6  
>2jk8_A BEPA, putative cell filamentation protein (BEPA protein; T4SS, OB fold, FIC domain, substrate protein, protein transl cell adhesion; 2.80A {Bartonella henselae} PDB: 2vy3_A 2vza_A*
Probab=99.91  E-value=2.5e-25  Score=224.82  Aligned_cols=188  Identities=19%  Similarity=0.182  Sum_probs=138.7

Q ss_pred             hccCCCCCCHHHHHHHHHhccccCCCCchhHHHHHHHHHHHHHHHHHhcc-cCCCCCHHHHHHHHHHHhcCCCCCCCCcc
Q psy1740          84 VGIEGNSMSLAQTRSIVETRMAIGGKSIAEHNEILGLDLALKYINNTLVN-RVGDITVADLLEIHKRVLGFADPLASGMF  162 (505)
Q Consensus        84 ~~IEGn~lT~~et~~lle~~~~~~~k~~~d~~ei~n~~~A~~~i~~~l~~-~~~~ls~~~i~~lH~~L~~~~~~~~~G~~  162 (505)
                      ..+++..++.+++..+ .++.  +-.+..+..++.++..+..++.- ... ...+||.+.|++||+.|+++..++ +|+|
T Consensus        12 ~~~~~~~y~yp~t~~L-~nkl--gI~~~~~l~~~e~~~~~~~~~~l-~~~~~~~~ls~~~L~~lH~~Lf~~~~~~-aG~~   86 (302)
T 2jk8_A           12 EIISPHHYVYPNTTTL-KNKY--GIKNLNAFLEKCSHDTAKAMINL-REESLPEYFDTAYLCHIHQQLFKNTFEW-AGYL   86 (302)
T ss_dssp             CCBCGGGGBCTTSSSB-CCTT--CCCSHHHHHHHHHHHHHHHHHHH-TTSCCCSCCSHHHHHHHHHHHHTTTCTT-TTCC
T ss_pred             hhccCCCeecCCCcee-eccC--CCCChHHHHHHHHHHHHHHHHHH-hhcccCCCCCHHHHHHHHHHHHCCCchh-cCcc
Confidence            3457777777765443 3332  22233556666777666555432 111 135799999999999999988665 8999


Q ss_pred             ccccce-ecc--------------ccCCCCCCcHHHHHHHHHHHhhccc-cCC---CHHHHHHHHHHHhccceecccCch
Q psy1740         163 RRTQVF-VGG--------------HIPPTPPHIIPLMDEFIAWLNSDVA-LRM---HPVRFAAIAHYKLVHIHPFIDGNG  223 (505)
Q Consensus       163 R~~~v~-ig~--------------~~pp~p~~v~~~m~~l~~~~~~~~~-~~~---~pi~~Aa~~h~~f~~IHPF~DGNG  223 (505)
                      |+.++. ++|              +.+++|..|+..|+++++|+++... ...   +++++||.+|++|++||||.||||
T Consensus        87 R~~~v~~~~G~~~~~P~~~~~~~~~~f~p~~~I~~~m~~l~~~l~~~~~~~~l~~~~~l~~aa~~h~~f~~IHPF~DGNG  166 (302)
T 2jk8_A           87 RHIPFTFADGTTAAMPEMKRTGWKNAFAIGDEIQEGLQRLDQTLAEKNNLQGLTREEFNSEAIELFNSLNQLHPFREGNG  166 (302)
T ss_dssp             TTSCEECTTSCEECCSCCCCCTTSCCCCCTHHHHHHHHHHHHHHHHTGGGCSCCHHHHHHHHHHHHHHHHHHCCSSSCHH
T ss_pred             cccCceeccCccccccccccCCCceecCCHHHHHHHHHHHHHHHHHhhhhccCCcccHHHHHHHHHHHHHEEEEEecCCH
Confidence            999874 333              3557789999999999999986421 122   348999999999999999999999


Q ss_pred             hHHHHHHHHHHHhCCCCCeeccccccccccCCCCcccchhccHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy1740         224 RTSRLLMNLILMQAGFPPVIIPKHERHTIKSTPGTNIEALGTISAAIEMKKMGKIDKALKLFEHAFA  290 (505)
Q Consensus       224 RtaRLl~n~~L~~~G~~p~~i~~~~r~~Yy~aL~~~~e~~~~l~a~i~~~~~g~~~~~~~~f~~~~~  290 (505)
                      ||+|++++++|.+.|+++ .+...+|.+||.++.             +....|++..|+++|..++.
T Consensus       167 Rt~Rll~~~ll~~~G~~i-~~~~i~r~~yy~a~~-------------~~~~~gD~~~~~~~f~~~~~  219 (302)
T 2jk8_A          167 RTQRLFFENLAKAAGHQL-NFSLITKERMMVASV-------------AVAENGDLEPMQHLFEDISN  219 (302)
T ss_dssp             HHHHHHHHHHHHHTTCCC-CGGGSCHHHHHHHHH-------------HHHHTCCCHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCCc-CchhcCHHHHHHHHH-------------HHHhcCCHHHHHHHHHHHHH
Confidence            999999999999999984 566678888887532             34557888888888887653


No 7  
>2f6s_A Cell filamentation protein, putative; structural PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.50A {Helicobacter pylori} SCOP: a.265.1.1
Probab=99.91  E-value=2.7e-25  Score=211.97  Aligned_cols=132  Identities=18%  Similarity=0.271  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHHhcccCCCCCHHHHHHHHHHHhcCCCCCCCCccccccceeccccCCCCCCcHHHHHHHHHHHhhccccCC
Q psy1740         120 LDLALKYINNTLVNRVGDITVADLLEIHKRVLGFADPLASGMFRRTQVFVGGHIPPTPPHIIPLMDEFIAWLNSDVALRM  199 (505)
Q Consensus       120 ~~~A~~~i~~~l~~~~~~ls~~~i~~lH~~L~~~~~~~~~G~~R~~~v~ig~~~pp~p~~v~~~m~~l~~~~~~~~~~~~  199 (505)
                      ..+|..+..+.......++|.+.|++||+.|+++..++ +|+||+.+|.+|+++||+|..|+..|++| .|++..   ..
T Consensus        30 ~~~~~~l~~~~~~~~~~~ls~~~l~~iH~~L~~~~~~~-aG~~R~~~v~~g~~~~~~~~~I~~~m~~l-~~~~~~---~~  104 (201)
T 2f6s_A           30 LEKAKHLIQSGLIDTIEVGTIKGLQEIHRFLFEGLYEF-AGKIRDKNIAKGNFRFANCLYLDLILPRI-ESMPQN---NF  104 (201)
T ss_dssp             HHHHHHHHHTSGGGGSCSSSHHHHHHHHHHHHTTTBTT-TTCCCSSCCEETTEECSCTTTHHHHHHHH-HTSCCS---SH
T ss_pred             HHHHHHHHhCcccccCCCCCHHHHHHHHHHHHCCcccc-cCCcCcCCccCCCEeeCCHHHHHHHHHHH-HHHhhc---cH
Confidence            33444444332222235899999999999999987654 99999999999999999999999999998 565442   23


Q ss_pred             CHHHHHHHHHHHhccceecccCchhHHHHHHHHHHHhCCCCCeeccccccccccCCCCcc
Q psy1740         200 HPVRFAAIAHYKLVHIHPFIDGNGRTSRLLMNLILMQAGFPPVIIPKHERHTIKSTPGTN  259 (505)
Q Consensus       200 ~pi~~Aa~~h~~f~~IHPF~DGNGRtaRLl~n~~L~~~G~~p~~i~~~~r~~Yy~aL~~~  259 (505)
                      +++   +.+|++|++||||.||||||+|+|++++|++.+..|+.+...+|++||++|..+
T Consensus       105 ~~l---~~~h~~f~~IHPF~DGNGRt~Rll~~~~L~~~~g~~~~~~~~~r~~Y~~aL~~a  161 (201)
T 2f6s_A          105 NQI---VEKYVEMNIAHPFLEGNGRATRIWLDLLLKKELKKIVLWDRIDKAAYLSAMERS  161 (201)
T ss_dssp             HHH---HHHHHHHHHHCCSSSCHHHHHHHHHHHHHHHHHSCEECGGGSCHHHHHHHHHHT
T ss_pred             HHH---HHHHhhheEeccCCCCChHHHHHHHHHHHHHhcCCCcccCccCHHHHHHHHHHH
Confidence            444   357899999999999999999999999997655567778888999999998754


No 8  
>2g03_A Hypothetical protein NMA0004; cell filamentation, cell division, chromosome partitioning, protein family, structural genomics, PSI; 2.20A {Neisseria meningitidis} SCOP: a.265.1.1 PDB: 3s6a_A* 3sn9_A*
Probab=99.91  E-value=8.3e-25  Score=207.57  Aligned_cols=130  Identities=18%  Similarity=0.254  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHhcccCCCCCHHHHHHHHHHHhcCCCCCCCCccccccceeccccCCCCCCcHHHHHHHHHHHhhccccCCC
Q psy1740         121 DLALKYINNTLVNRVGDITVADLLEIHKRVLGFADPLASGMFRRTQVFVGGHIPPTPPHIIPLMDEFIAWLNSDVALRMH  200 (505)
Q Consensus       121 ~~A~~~i~~~l~~~~~~ls~~~i~~lH~~L~~~~~~~~~G~~R~~~v~ig~~~pp~p~~v~~~m~~l~~~~~~~~~~~~~  200 (505)
                      .++.++..+.+.....++|.+.|+++|+.|+++..++ +|+||+.++.+|++.||+|..|+..|++++. ++..   ..+
T Consensus        23 ~~~~~l~~~~~~~~~~~ls~~~l~~lH~~L~~~~~~~-aG~~R~~~i~~g~~~~~~~~~v~~~m~~l~~-~~~~---~~~   97 (194)
T 2g03_A           23 HNARRLFESGDIDRIEVGTTAGLQQIHRYLFGGLYDF-AGQIREDNISKGGFRFANAMYLKEALVKIEQ-MPER---TFE   97 (194)
T ss_dssp             HHHHHHHHTSGGGGSCSSSHHHHHHHHHHHHTTTSTT-TTCCCSSCCEETTEECCCGGGHHHHHHHHHH-SCCS---SHH
T ss_pred             HHHHHHHhccccccCCCCCHHHHHHHHHHHHcCCccc-CCCceecCcccCCcCCCCHHHHHHHHHHHHH-hhhc---cHH
Confidence            4455555443333335899999999999999988765 9999999999999999999999999999865 3221   234


Q ss_pred             HHHHHHHHHHHhccceecccCchhHHHHHHHHHHH-hCCCCCeeccccccccccCCCCcc
Q psy1740         201 PVRFAAIAHYKLVHIHPFIDGNGRTSRLLMNLILM-QAGFPPVIIPKHERHTIKSTPGTN  259 (505)
Q Consensus       201 pi~~Aa~~h~~f~~IHPF~DGNGRtaRLl~n~~L~-~~G~~p~~i~~~~r~~Yy~aL~~~  259 (505)
                      ++   +.+|++|++||||.||||||+|++++++|+ +.|+ |+.+...+|.+||++|..+
T Consensus        98 ~l---~~~~~~f~~IHPF~DGNGRt~Rll~~~~L~~~~g~-~~~~~~~~r~~Y~~aL~~a  153 (194)
T 2g03_A           98 EI---IAKYVEMNIAHPFLEGNGRSTRIWLDLVLKKNLKK-VVNWQNVSKTLYLQAMERS  153 (194)
T ss_dssp             HH---HHHHHHHHHHCCSSSCHHHHHHHHHHHHHHHHHSC-EECGGGSCHHHHHHHHHHT
T ss_pred             HH---HHHHHHHeeEeeecCCchHHHHHHHHHHHHHhcCC-CEEEcccCHHHHHHHHHHH
Confidence            44   357889999999999999999999999995 7885 5667788999999998764


No 9  
>3se5_A Cell filamentation protein FIC-related protein; ampylation, adenylylation, transferase; HET: ANP P6G; 1.70A {Neisseria meningitidis}
Probab=99.90  E-value=6.1e-24  Score=195.19  Aligned_cols=134  Identities=18%  Similarity=0.223  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHhcCCCCCCCCccccccceeccccCCCCCCcHHHHHHHHHHHhhccc
Q psy1740         117 ILGLDLALKYINNTLVNRVGDITVADLLEIHKRVLGFADPLASGMFRRTQVFVGGHIPPTPPHIIPLMDEFIAWLNSDVA  196 (505)
Q Consensus       117 i~n~~~A~~~i~~~l~~~~~~ls~~~i~~lH~~L~~~~~~~~~G~~R~~~v~ig~~~pp~p~~v~~~m~~l~~~~~~~~~  196 (505)
                      +...++|++++.........++|.+.|+++|+.|++++.++ +|+||+.+|++|++.+++|..|+..|+.+.. +.    
T Consensus        13 ~~~~~~A~~l~e~~~~~~~~~~s~~~L~~iH~~Lf~~i~~~-AG~~R~~~v~~G~~~f~pp~~I~~~m~~l~~-l~----   86 (164)
T 3se5_A           13 EQSLHNARRLFESGDIDRIEVGTTAGLQQIHRYLFGGLYDF-AGQIREDNISKGGFRFANAMYLKEALVKIEQ-MP----   86 (164)
T ss_dssp             HHHHHHHHHHHHTSGGGGSCSSSHHHHHHHHHHHHBTTBTT-TTCCCCSCCEETTEECCCTTTHHHHHHHHTT-SC----
T ss_pred             HHHHHHHHHHHHhcccccCCCCCHHHHHHHHHHHHcCCccc-CCCeeeccceeccccCCCHHHHHHHHHHHHh-cc----
Confidence            44555677776654444567999999999999999999776 9999999999999888888899999987532 21    


Q ss_pred             cCCCHHHHHHHHHHHhccceecccCchhHHHHHHHHHHH-hCCCCCeeccccccccccCCCCcc
Q psy1740         197 LRMHPVRFAAIAHYKLVHIHPFIDGNGRTSRLLMNLILM-QAGFPPVIIPKHERHTIKSTPGTN  259 (505)
Q Consensus       197 ~~~~pi~~Aa~~h~~f~~IHPF~DGNGRtaRLl~n~~L~-~~G~~p~~i~~~~r~~Yy~aL~~~  259 (505)
                        .+.+..+|.+|++|++||||.||||||+|++++.+|. +.|++ +.+...+|++||++|..+
T Consensus        87 --~~~~~~ia~~h~e~~~iHPF~dGNgR~~r~~~~~~l~~~~g~~-~~~~~~~r~~Y~~Al~~s  147 (164)
T 3se5_A           87 --ERTFEEIIAKYVEMNIAHPFLEGNGRSTRIWLDLVLKKNLKKV-VNWQNVSKTLYLQAMERS  147 (164)
T ss_dssp             --CSSHHHHHHHHHHHHHHCCSSSCHHHHHHHHHHHHHHHHHSCE-ECGGGSCHHHHHHHHHHT
T ss_pred             --cchHHHHHHHHHHheeEeeccCCChhHHHHHHHHHHHHHcCCC-cCcCcCCHHHHHHHHHHH
Confidence              1234667789999999999999999999999999995 67875 567778999999999764


No 10 
>3let_A Adenosine monophosphate-protein transferase VOPS; ampylation, FIC domain, type III, effector, T3SS, nucleotidyltransferase, virulence; 1.80A {Vibrio parahaemolyticus}
Probab=99.76  E-value=1.2e-18  Score=165.32  Aligned_cols=105  Identities=19%  Similarity=0.316  Sum_probs=80.8

Q ss_pred             cCCCC-CHHHHHHHHHHHhcCCCCCCCCcc---ccccceeccccCCCCCCcHHHHHHHHHHHhhccccCCCHHHHHHHHH
Q psy1740         134 RVGDI-TVADLLEIHKRVLGFADPLASGMF---RRTQVFVGGHIPPTPPHIIPLMDEFIAWLNSDVALRMHPVRFAAIAH  209 (505)
Q Consensus       134 ~~~~l-s~~~i~~lH~~L~~~~~~~~~G~~---R~~~v~ig~~~pp~p~~v~~~m~~l~~~~~~~~~~~~~pi~~Aa~~h  209 (505)
                      +..+| ++..|++||++++.+++...+|.|   |+.++.|||-     ..++..|+++    ...  ...+|+..|+.+|
T Consensus       200 k~k~LtsidiLKELHalVL~gIDdd~rG~~IsG~~vP~sisG~-----~ml~q~m~~l----~~~--~Pv~p~elaa~lh  268 (314)
T 3let_A          200 NGKDLLNMDNLKELHARLVPNVERDYRGPNISGGTLPSSIGGE-----GMLKQHIEGF----LKE--NPVADKDLGKHLF  268 (314)
T ss_dssp             SCCCSSCHHHHHHHHHHHSTTCCCCCCCCCCSSCCCCCHHHHH-----HHHHHHHHTH----HHH--SCCCHHHHHHHHH
T ss_pred             cCCCcchHHHHHHHHHHHhcCccccccCcCCCCCcCCCCcchH-----HHHHHHHHHH----hcc--CCccHHHHHHHHH
Confidence            35688 888888999999999876667776   5555555431     1334444433    222  2368899999999


Q ss_pred             HHhccceecccCchhHHHHHHHHHHHhCC-CCCeecccccc
Q psy1740         210 YKLVHIHPFIDGNGRTSRLLMNLILMQAG-FPPVIIPKHER  249 (505)
Q Consensus       210 ~~f~~IHPF~DGNGRtaRLl~n~~L~~~G-~~p~~i~~~~r  249 (505)
                      ..|+.||||.||||||+||+||+.|++.| |+|++|..++|
T Consensus       269 ~~fv~IHPF~DGNGRtgRLLmN~~ll~~g~~pPliI~~E~r  309 (314)
T 3let_A          269 AGVIGYHGFTDGNGRMGRMLYAIAELRNDSFNPLAMNAENS  309 (314)
T ss_dssp             HHHHHHTCSSSCHHHHHHHHHHHHHHHTTCCCCCCHHHHHH
T ss_pred             HHhheeCCccCCCcHHHHHHHHHHHHHcCCCCceeechHhh
Confidence            99999999999999999999999999997 99998876654


No 11 
>3cuc_A Protein of unknown function with A FIC domain; FIC protein family, structural genomics, joint center for ST genomics, JCSG; HET: MSE; 2.71A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.69  E-value=6.9e-17  Score=162.28  Aligned_cols=134  Identities=16%  Similarity=0.218  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HHhhhhcccccCCcCCHHHHHHHHhhccCCCCCchhHHHHHhCHHHHHHH
Q psy1740         352 LRKIDEKRDQVSSIPESDPALCKAKKESY-FQHIYHTVGIEGNSMSLAQTRSIVETRMAIGGKSIAEHNEILGLDLALKY  430 (505)
Q Consensus       352 L~~iD~~k~~l~~~rpl~~~l~~~lre~~-~~~t~~s~~iEGntlt~~et~~il~~g~~~~g~~~~e~~e~~n~~~a~~~  430 (505)
                      +..||+++..+++++|+++...+++++.+ ++++|+||+|||||+|+.||+.|++.|.++++++.+|+.|+.||..|+++
T Consensus         4 ~~~i~~~~~~~~~~~~l~~~~~~~l~~~~~i~~~~~S~~IEG~~~t~~e~~~ll~~~~~~~~~~~~d~~ev~~~~~a~~~   83 (291)
T 3cuc_A            4 ISNIKQLYSKWKSLQPLKPEDLKRWNDKFKLEFNYNSNHLEGNTLTYGQTKLLLMFGETSGNASLKDYEEMKAHNVGLEM   83 (291)
T ss_dssp             -CHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHCCCCSSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhcCCcCCCCchhHHHHHHHHHHHHHH
Confidence            56789999999999999999999999886 99999999999999999999999998998899999999999999999999


Q ss_pred             HHHHHhcc------------hhhhccc-----------------ccCCccccccceeccC-CccccCCCCcccchhchHH
Q psy1740         431 INNTLVNS------------YYQVLEE-----------------ANRGDIRPFVRFIAPV-TIKFSRRPTEATFGRSSAS  480 (505)
Q Consensus       431 ~~~~~~~~------------~~~l~~~-----------------~~~G~~r~~~~~i~~~-~~~~~~~~p~~~~~~~~~~  480 (505)
                      |.+.+.++            |..|++.                 ..+|+||+.+|.|.+. |+.|+||+|..  +...|+
T Consensus        84 i~~~~~~~~~~ls~~~i~~lH~~L~~~~~~~~~~~~~G~~~~~~~~~G~~R~~~~~i~~~~g~~~~~~~p~~--v~~~m~  161 (291)
T 3cuc_A           84 IKQEAQDKERPLTESFIRELNRTILVQDYWKNAKTPDGQDIRMQIKVGEYKSRPNSVLTATGEVFSYASPEE--TPAFMT  161 (291)
T ss_dssp             HHHHHHSTTCCCCHHHHHHHHHHHSCSCCCC---------------CCSBCSSCCCEEC--CCEECCCCTTT--HHHHHH
T ss_pred             HHHHHhccCCCCCHHHHHHHHHHHHcCcccccccCCCCcccccccccceeeccCceEEecCCCeecCCCHHH--HHHHHH
Confidence            99876432            7777651                 2589999999988532 34688887753  334455


Q ss_pred             Hhhhhhc
Q psy1740         481 LLNARTR  487 (505)
Q Consensus       481 ~~~~~~~  487 (505)
                      -|-.|++
T Consensus       162 ~l~~~~~  168 (291)
T 3cuc_A          162 SLVDWYN  168 (291)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            5555554


No 12 
>3dd7_A DOC, death on curing protein; all alpha, ribosome inhibitor; HET: MSE; 1.70A {Enterobacteria phage P1} PDB: 3dd9_A 3k33_A 3kh2_A
Probab=99.04  E-value=4e-10  Score=100.05  Aligned_cols=90  Identities=17%  Similarity=0.129  Sum_probs=66.8

Q ss_pred             CCCHHHHHHHHHHHhcCCCCCCCCccccccceeccccCCCCCCcHHHHHHHHHHHhhccccCCCHHHHHHHHHHHhccce
Q psy1740         137 DITVADLLEIHKRVLGFADPLASGMFRRTQVFVGGHIPPTPPHIIPLMDEFIAWLNSDVALRMHPVRFAAIAHYKLVHIH  216 (505)
Q Consensus       137 ~ls~~~i~~lH~~L~~~~~~~~~G~~R~~~v~ig~~~pp~p~~v~~~m~~l~~~~~~~~~~~~~pi~~Aa~~h~~f~~IH  216 (505)
                      -+|.+.+..+|..++.... ..+| .|            ++..+...+....+.+-..  ...++..+||.+++.++.+|
T Consensus         3 ~Ls~~~vl~ih~~~i~~~G-G~~G-vr------------D~g~LesAl~rp~~~~~~e--~yp~~~~kAA~l~~~l~~~H   66 (135)
T 3dd7_A            3 HISPEELIALHDANISRYG-GLPG-MS------------DPGRAEAIIGRVQARVAYE--EITDLFEVSATYLVATARGY   66 (135)
T ss_dssp             CCCHHHHHHHHHHHHHHHC-CCCS-BS------------STTHHHHHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHHC
T ss_pred             ccCHHHHHHHHHHHHHHcC-CCCC-cc------------CchHHHHHHHhHHhhcccc--cCCCHHHHHHHHHHHHHhCC
Confidence            5899999999999875321 1122 22            2334555555554432221  23588999999999999999


Q ss_pred             ecccCchhHHHHHHHHHHHhCCCCCe
Q psy1740         217 PFIDGNGRTSRLLMNLILMQAGFPPV  242 (505)
Q Consensus       217 PF~DGNGRtaRLl~n~~L~~~G~~p~  242 (505)
                      ||.|||||||+++++.+|..+|+++.
T Consensus        67 pF~DGNKRta~~~~~~fL~~nG~~~~   92 (135)
T 3dd7_A           67 IFNDANKRTALNSALLFLRRNGVQVF   92 (135)
T ss_dssp             CBSSCHHHHHHHHHHHHHHHTTCCCC
T ss_pred             CCCCccHHHHHHHHHHHHHHCCCCCC
Confidence            99999999999999999999999874


No 13 
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=98.32  E-value=5.9e-07  Score=92.98  Aligned_cols=104  Identities=13%  Similarity=0.045  Sum_probs=71.4

Q ss_pred             HHHH-HHhhhhcccccCCcCCHHHHHHHHhhccCCCCCchhHHHHHhCHHHHHHHHHHHHhcc----------hhhhccc
Q psy1740         377 KESY-FQHIYHTVGIEGNSMSLAQTRSIVETRMAIGGKSIAEHNEILGLDLALKYINNTLVNS----------YYQVLEE  445 (505)
Q Consensus       377 re~~-~~~t~~s~~iEGntlt~~et~~il~~g~~~~g~~~~e~~e~~n~~~a~~~~~~~~~~~----------~~~l~~~  445 (505)
                      -..+ ++.+++||+|||+++|..|+...+. +   ++++.+|..||.||++|++|+.+.+.+.          |..|++.
T Consensus        59 ~~~l~~~ea~~Ss~IEG~~~t~~~~~~~~~-~---~~~~~~d~~ev~n~~~al~~~~~~~~~~pls~~~i~~lH~~L~~~  134 (373)
T 2qc0_A           59 INLLPLLEAQGSSEIENIVTTTDKLFQYAQ-E---DSQADPMTKEALRYRTALYQCFTQLSNRPLCVTTALEICSTIKSV  134 (373)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCHHHHHHHSS-C---CTTSCHHHHHHHHHHHHHHHHHHHTTTSCSSHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHhhhhhhhcCCCCCHHHHHHHHh-c---cCCCCccHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence            3444 6889999999999999999977665 3   4567899999999999999999987643          6666652


Q ss_pred             ccCCcccccc-ceecc--C-CccccCCCCcccchhchHHHhhhhhc
Q psy1740         446 ANRGDIRPFV-RFIAP--V-TIKFSRRPTEATFGRSSASLLNARTR  487 (505)
Q Consensus       446 ~~~G~~r~~~-~~i~~--~-~~~~~~~~p~~~~~~~~~~~~~~~~~  487 (505)
                        .|.||+.+ +++.+  . +..|.||+|. ..+...|+-+..|++
T Consensus       135 --~~~~r~~~g~~~~~~~~g~~~~~pP~~~-~~v~~~m~~l~~~~~  177 (373)
T 2qc0_A          135 --QMDVRKVPGTSLTNQATGEVIYTPPAGE-SVIRDLLSNWEAFLH  177 (373)
T ss_dssp             --CCCCCCSSCCCEECTTTCCEEECCCCSH-HHHHHHHHHHHHHHH
T ss_pred             --CCCccccCCEEeccCCCCceeEECCCcH-HHHHHHHHHHHHHHh
Confidence              24466555 23322  1 2357776332 233445555556665


No 14 
>3n3u_A Ampylator IBPA, adenosine monophosphate-protein transferase IBPA; FIC domain; 1.85A {Histophilus somni} PDB: 3n3v_A*
Probab=98.10  E-value=8.9e-07  Score=87.83  Aligned_cols=103  Identities=9%  Similarity=-0.046  Sum_probs=62.6

Q ss_pred             HHHHHHHHhhhhcccccCCcCCHHHHHHHHhh-ccCCCCCchhHHHHHhCHHHHHHHHHHHHhcc----------hhhhc
Q psy1740         375 AKKESYFQHIYHTVGIEGNSMSLAQTRSIVET-RMAIGGKSIAEHNEILGLDLALKYINNTLVNS----------YYQVL  443 (505)
Q Consensus       375 ~lre~~~~~t~~s~~iEGntlt~~et~~il~~-g~~~~g~~~~e~~e~~n~~~a~~~~~~~~~~~----------~~~l~  443 (505)
                      ..++.++.-++.||+||||++|..|...+|.+ |..+ ...-+++.++.   .|++.........          |..|+
T Consensus        91 ~~~~~~i~~iqssn~IEG~~ts~~qIt~AL~~~~k~v-q~~p~a~~evk---~Aie~yl~~~~~~pLS~~~IkeLHr~L~  166 (299)
T 3n3u_A           91 SEIQDLVKTLPKTKVIEDLSTKTNEITEALAATSKTI-QRTPELKEQLK---TAIEDFLQNSQGKPLTVQMIENLNHGLR  166 (299)
T ss_dssp             HHHHHHHHTCCCCCSCCCHHHHHHHHHHHHHHTCHHH-HHCHHHHHHHH---HHHHHHHHHHTTSCCCHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhhhhhhCCCCCHHHHHHHHHhcchhh-cCCHHHHHHHH---HHHHHHHHhccCCCCCHHHHHHHHHHHh
Confidence            34566899999999999999999998877763 2211 11234566665   4544443332221          77776


Q ss_pred             c--cccCCccccccceeccCCccccCCCCcccchhchHHHhhhhhc
Q psy1740         444 E--EANRGDIRPFVRFIAPVTIKFSRRPTEATFGRSSASLLNARTR  487 (505)
Q Consensus       444 ~--~~~~G~~r~~~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  487 (505)
                      .  ...+|+||+.+|.|.|  ..|.||++.++    .|+-|-.|++
T Consensus       167 ~~~~~~aG~yR~~~V~Igg--~~f~PP~~i~v----~M~~L~~~ln  206 (299)
T 3n3u_A          167 PDEGEGRLLYKKENLTKEN--AVFSSPEAAKI----QLAETVDFIN  206 (299)
T ss_dssp             TTSCTTCCSBCSCC-------CCCCCHHHHHH----HHHHHHHHHH
T ss_pred             CCCCccCCccccCCeeeCC--eeecCCchHHH----HHHHHHHHHh
Confidence            6  4568999999999954  46877655444    4444444554


No 15 
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=97.56  E-value=0.00012  Score=75.48  Aligned_cols=99  Identities=13%  Similarity=-0.004  Sum_probs=70.6

Q ss_pred             HHhhhhcccccCCcCCHHHHHHHHhhccCCCCCchhHHHHHhCHHHHHHHHHHHHhcc----------hhhhcc-----c
Q psy1740         381 FQHIYHTVGIEGNSMSLAQTRSIVETRMAIGGKSIAEHNEILGLDLALKYINNTLVNS----------YYQVLE-----E  445 (505)
Q Consensus       381 ~~~t~~s~~iEGntlt~~et~~il~~g~~~~g~~~~e~~e~~n~~~a~~~~~~~~~~~----------~~~l~~-----~  445 (505)
                      .+-+..||+|||...|..|...... +   ...+-.+..||.|+.+|+.+..+.+.+.          |..++.     .
T Consensus        64 ~~EA~~Ss~IEG~~tt~~~l~~~~~-~---~~~~~~~~~Ev~~y~~al~~~~~~~~~~pls~~~i~~lh~~L~~~~~~~~  139 (373)
T 3eqx_A           64 LLEAQGSSEIENIVTTTDKLFQYAQ-E---DSQADPMTKEALRYRTALYQCFTQLSNRPLCVTTALEICSTIKSVQMDVR  139 (373)
T ss_dssp             HHHHHHHHHHTTCCCCHHHHHHHSS-C---CTTSCHHHHHHHHHHHHHHHHHHHTTTSCSSHHHHHHHHHHHHTSCCCCC
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHhh-c---cCCCChhHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhccCccc
Confidence            4458899999999999988655433 1   2334467889999999999999887654          666665     4


Q ss_pred             ccCCccccccceeccCCccccCCCCcccchhchHHHhhhhhc
Q psy1740         446 ANRGDIRPFVRFIAPVTIKFSRRPTEATFGRSSASLLNARTR  487 (505)
Q Consensus       446 ~~~G~~r~~~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  487 (505)
                      ..+|.||+.++.+   +..|.||||... +..+|+.|..|++
T Consensus       140 ~~pG~~r~~~~~~---~~~~~ppp~~~~-i~~~m~~l~~~~~  177 (373)
T 3eqx_A          140 KVPGTSLTNQATG---EVIYTPPAGESV-IRDLLSNWEAFLH  177 (373)
T ss_dssp             CSSCCCEECTTTC---CEEECCCCSHHH-HHHHHHHHHHHHH
T ss_pred             CCCCEeCCCCCcC---CeeeeCCCChHH-HHHHHHHHHHHhh
Confidence            4689999888765   245666666544 4456666666664


No 16 
>3se5_A Cell filamentation protein FIC-related protein; ampylation, adenylylation, transferase; HET: ANP P6G; 1.70A {Neisseria meningitidis}
Probab=87.46  E-value=0.42  Score=43.25  Aligned_cols=41  Identities=10%  Similarity=-0.070  Sum_probs=25.6

Q ss_pred             hhhhcc--cccCCccccccceeccCCccccCCCCcccchhchHHHhhhh
Q psy1740         439 YYQVLE--EANRGDIRPFVRFIAPVTIKFSRRPTEATFGRSSASLLNAR  485 (505)
Q Consensus       439 ~~~l~~--~~~~G~~r~~~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~  485 (505)
                      |..|++  ...||+||+++|.|.|  ..|  +||..++  ..|+.+.+|
T Consensus        43 H~~Lf~~i~~~AG~~R~~~v~~G~--~~f--~pp~~I~--~~m~~l~~l   85 (164)
T 3se5_A           43 HRYLFGGLYDFAGQIREDNISKGG--FRF--ANAMYLK--EALVKIEQM   85 (164)
T ss_dssp             HHHHHBTTBTTTTCCCCSCCEETT--EEC--CCTTTHH--HHHHHHTTS
T ss_pred             HHHHHcCCcccCCCeeeccceecc--ccC--CCHHHHH--HHHHHHHhc
Confidence            777776  5579999999999942  234  4444443  334445544


No 17 
>2jk8_A BEPA, putative cell filamentation protein (BEPA protein; T4SS, OB fold, FIC domain, substrate protein, protein transl cell adhesion; 2.80A {Bartonella henselae} PDB: 2vy3_A 2vza_A*
Probab=84.15  E-value=0.34  Score=48.22  Aligned_cols=71  Identities=21%  Similarity=0.109  Sum_probs=45.8

Q ss_pred             hhcccccCCcCCHHHHHHHHhhccCCCCCchhHHHHHhCHHHHHHHHHHHHhcc-------------hhhhcc--cccCC
Q psy1740         385 YHTVGIEGNSMSLAQTRSIVETRMAIGGKSIAEHNEILGLDLALKYINNTLVNS-------------YYQVLE--EANRG  449 (505)
Q Consensus       385 ~~s~~iEGntlt~~et~~il~~g~~~~g~~~~e~~e~~n~~~a~~~~~~~~~~~-------------~~~l~~--~~~~G  449 (505)
                      ++-+.+++...++++|.+|.. ..  |-++.++..++.+|..+..++ ++..+.             |..|++  ...+|
T Consensus         9 ~~~~~~~~~~y~yp~t~~L~n-kl--gI~~~~~l~~~e~~~~~~~~~-~l~~~~~~~~ls~~~L~~lH~~Lf~~~~~~aG   84 (302)
T 2jk8_A            9 KNTEIISPHHYVYPNTTTLKN-KY--GIKNLNAFLEKCSHDTAKAMI-NLREESLPEYFDTAYLCHIHQQLFKNTFEWAG   84 (302)
T ss_dssp             ---CCBCGGGGBCTTSSSBCC-TT--CCCSHHHHHHHHHHHHHHHHH-HHTTSCCCSCCSHHHHHHHHHHHHTTTCTTTT
T ss_pred             hhhhhccCCCeecCCCceeec-cC--CCCChHHHHHHHHHHHHHHHH-HHhhcccCCCCCHHHHHHHHHHHHCCCchhcC
Confidence            444556888999988877664 22  223446788888888776554 332221             777776  45789


Q ss_pred             ccccccceec
Q psy1740         450 DIRPFVRFIA  459 (505)
Q Consensus       450 ~~r~~~~~i~  459 (505)
                      +||+++|.+.
T Consensus        85 ~~R~~~v~~~   94 (302)
T 2jk8_A           85 YLRHIPFTFA   94 (302)
T ss_dssp             CCTTSCEECT
T ss_pred             cccccCceec
Confidence            9999998654


No 18 
>2f6s_A Cell filamentation protein, putative; structural PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.50A {Helicobacter pylori} SCOP: a.265.1.1
Probab=79.78  E-value=1.4  Score=41.06  Aligned_cols=41  Identities=12%  Similarity=-0.183  Sum_probs=27.6

Q ss_pred             hhhhcc--cccCCccccccceeccCCccccCCCCcccchhchHHHhhhhh
Q psy1740         439 YYQVLE--EANRGDIRPFVRFIAPVTIKFSRRPTEATFGRSSASLLNART  486 (505)
Q Consensus       439 ~~~l~~--~~~~G~~r~~~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~~  486 (505)
                      |..|++  ...+|+||+++|.+    |.+.||||..++.  .|+.| .|+
T Consensus        57 H~~L~~~~~~~aG~~R~~~v~~----g~~~~~~~~~I~~--~m~~l-~~~   99 (201)
T 2f6s_A           57 HRFLFEGLYEFAGKIRDKNIAK----GNFRFANCLYLDL--ILPRI-ESM   99 (201)
T ss_dssp             HHHHHTTTBTTTTCCCSSCCEE----TTEECSCTTTHHH--HHHHH-HTS
T ss_pred             HHHHHCCcccccCCcCcCCccC----CCEeeCCHHHHHH--HHHHH-HHH
Confidence            555655  34689999999876    3588888876554  44545 444


No 19 
>2g03_A Hypothetical protein NMA0004; cell filamentation, cell division, chromosome partitioning, protein family, structural genomics, PSI; 2.20A {Neisseria meningitidis} SCOP: a.265.1.1 PDB: 3s6a_A* 3sn9_A*
Probab=75.33  E-value=2  Score=39.61  Aligned_cols=41  Identities=10%  Similarity=-0.145  Sum_probs=26.9

Q ss_pred             hhhhcc--cccCCccccccceeccCCccccCCCCcccchhchHHHhhhh
Q psy1740         439 YYQVLE--EANRGDIRPFVRFIAPVTIKFSRRPTEATFGRSSASLLNAR  485 (505)
Q Consensus       439 ~~~l~~--~~~~G~~r~~~~~i~~~~~~~~~~~p~~~~~~~~~~~~~~~  485 (505)
                      |..|++  ...+|+||+.+|.+   | .+.+|||..++.  .|+-+.++
T Consensus        49 H~~L~~~~~~~aG~~R~~~i~~---g-~~~~~~~~~v~~--~m~~l~~~   91 (194)
T 2g03_A           49 HRYLFGGLYDFAGQIREDNISK---G-GFRFANAMYLKE--ALVKIEQM   91 (194)
T ss_dssp             HHHHHTTTSTTTTCCCSSCCEE---T-TEECCCGGGHHH--HHHHHHHS
T ss_pred             HHHHHcCCcccCCCceecCccc---C-CcCCCCHHHHHH--HHHHHHHh
Confidence            666665  34699999999877   3 477777765543  44444443


No 20 
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=68.35  E-value=31  Score=28.20  Aligned_cols=68  Identities=10%  Similarity=0.054  Sum_probs=44.7

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCChhHHhHhhhhhhhccccceechhhHHHHHhcCCcchHHHHHhHHH
Q psy1740         272 MKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQALVNRQRT  340 (505)
Q Consensus       272 ~~~~g~~~~~~~~f~~~~~~~~~~pdvl~~~r~~~~~~~~~vv~~d~~~~~al~~~p~~~~al~~~~rt  340 (505)
                      +++.|+++.+++.|..++.+.|.++++....+......+.. -.+-..+-+++-..|....+...+...
T Consensus        23 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~-~~A~~~~~~al~~~p~~~~a~~~lg~~   90 (126)
T 4gco_A           23 YFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEF-QRALDDCDTCIRLDSKFIKGYIRKAAC   90 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccH-HHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence            77899999999999999999999988775555544222211 122233445555667766666655433


No 21 
>3shg_A VBHT; ampylation, adenylylation, toxin-antitoxin complex, FIC fold transfer, transferase-protein binding complex; HET: TLA; 1.50A {Bartonella schoenbuchensis R1}
Probab=60.60  E-value=4.2  Score=37.83  Aligned_cols=21  Identities=10%  Similarity=-0.081  Sum_probs=17.0

Q ss_pred             hhhhcc--cccCCccccccceec
Q psy1740         439 YYQVLE--EANRGDIRPFVRFIA  459 (505)
Q Consensus       439 ~~~l~~--~~~~G~~r~~~~~i~  459 (505)
                      |..|++  ...+|+||+++|.|.
T Consensus        64 H~~Lf~~~~~~aG~~R~~~v~~g   86 (205)
T 3shg_A           64 HKKLFGDVYEWAGKTRLVDIVKD   86 (205)
T ss_dssp             HHHHHTTTCTTTTCCCSSCCEET
T ss_pred             HHHHHhcccccCCCcCcCCeecC
Confidence            677766  457999999999994


No 22 
>1x9b_A Hypothetical membrane protein TA0354_69_121; alpha protein, structural genomics, protein structure initiative, PSI; NMR {Thermoplasma acidophilum} SCOP: a.10.2.1
Probab=55.31  E-value=31  Score=24.41  Aligned_cols=47  Identities=15%  Similarity=0.339  Sum_probs=40.9

Q ss_pred             hhhHHHHHhcCCcchHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHh
Q psy1740         317 DKMYFKALISYPEHGQALVNRQRTALVVEELDRDFLRKIDEKRDQVS  363 (505)
Q Consensus       317 d~~~~~al~~~p~~~~al~~~~rt~~l~eeld~~~L~~iD~~k~~l~  363 (505)
                      |+..|..++..+.-..++.++.....|...++..+..+++++|+++.
T Consensus         5 d~~~Fe~~InS~SK~~Fv~nL~ELE~is~rlg~~Y~~~LeeaK~kWk   51 (53)
T 1x9b_A            5 DRAKFESMINSPSKSVFVRNLNELEALAVRLGKSYRIQLDQAKEKWK   51 (53)
T ss_dssp             HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhCCccHHHHHHhHHHHHHHHHHHchHHHHHHHHHHHhhc
Confidence            55667888999988889999888888899999999999999998874


No 23 
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=52.86  E-value=84  Score=26.14  Aligned_cols=68  Identities=13%  Similarity=0.130  Sum_probs=46.5

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCChhHHhHhhhhhhhccccceechhhHHHHHhcCCcchHHHHHhHHH
Q psy1740         272 MKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQALVNRQRT  340 (505)
Q Consensus       272 ~~~~g~~~~~~~~f~~~~~~~~~~pdvl~~~r~~~~~~~~~vv~~d~~~~~al~~~p~~~~al~~~~rt  340 (505)
                      +...|+++++++.|.+++.+.|.+++....++......+.. -.+-..+-+++-..|....+.......
T Consensus        41 y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~la~~  108 (150)
T 4ga2_A           41 YYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT-DKAVECYRRSVELNPTQKDLVLKIAEL  108 (150)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch-HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            67889999999999999999999988776666655333221 123334445566677776666665443


No 24 
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=49.41  E-value=60  Score=27.71  Aligned_cols=69  Identities=13%  Similarity=0.122  Sum_probs=45.9

Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCChhHHhHhhhhhhhccccceechhhHHHHHhcCCcchHHHHHhHHH
Q psy1740         271 EMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQALVNRQRT  340 (505)
Q Consensus       271 ~~~~~g~~~~~~~~f~~~~~~~~~~pdvl~~~r~~~~~~~~~vv~~d~~~~~al~~~p~~~~al~~~~rt  340 (505)
                      .+...|+++.+++.|.+++.+.|.+++....++......+.. -.+-..+-+++-..|....+..++-.+
T Consensus        45 ~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~-~~Ai~~~~~al~l~P~~~~~~~~lg~~  113 (151)
T 3gyz_A           45 DFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQF-QQAADLYAVAFALGKNDYTPVFHTGQC  113 (151)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccH-HHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence            367889999999999999999999998776555544322211 123334456666677766666665433


No 25 
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=46.87  E-value=70  Score=26.65  Aligned_cols=63  Identities=14%  Similarity=0.177  Sum_probs=41.4

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCChhHHhHhhhhhhhccccceechhhHHHHHhcCCcchHHH
Q psy1740         272 MKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQAL  334 (505)
Q Consensus       272 ~~~~g~~~~~~~~f~~~~~~~~~~pdvl~~~r~~~~~~~~~vv~~d~~~~~al~~~p~~~~al  334 (505)
                      +...|+++.+++.|..++.+.|.++++...++..........-.+....-+++-..|.+..+.
T Consensus        75 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~  137 (150)
T 4ga2_A           75 YELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVY  137 (150)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHH
T ss_pred             HHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHH
Confidence            668899999999999999999999998877777653332221111111124555567654443


No 26 
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=45.56  E-value=58  Score=26.61  Aligned_cols=35  Identities=14%  Similarity=0.177  Sum_probs=23.9

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCChhHHhHhhhhh
Q psy1740         272 MKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFI  306 (505)
Q Consensus       272 ~~~~g~~~~~~~~f~~~~~~~~~~pdvl~~~r~~~  306 (505)
                      +...|+++.+++.|..++.+.+.++++...++...
T Consensus        62 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   96 (142)
T 2xcb_A           62 RQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH   96 (142)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence            55677777888888877777777776665444433


No 27 
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=38.58  E-value=1e+02  Score=24.93  Aligned_cols=64  Identities=14%  Similarity=0.124  Sum_probs=38.6

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCChhHHhHhhhhhhhccccceechhhHHHHHhcCCcchHHHHH
Q psy1740         272 MKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQALVN  336 (505)
Q Consensus       272 ~~~~g~~~~~~~~f~~~~~~~~~~pdvl~~~r~~~~~~~~~vv~~d~~~~~al~~~p~~~~al~~  336 (505)
                      +...|+++.+++.|..++.+.+.+++....++......+. .-.+-..+-+++-..|...++...
T Consensus        57 ~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~-~~~A~~~~~~al~l~P~~~~a~~~  120 (126)
T 4gco_A           57 LTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMRE-WSKAQRAYEDALQVDPSNEEAREG  120 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCcCCHHHHHH
Confidence            6678899999999999988888888766555554422211 112223333455555655544433


No 28 
>3shg_B VBHA; ampylation, adenylylation, toxin-antitoxin complex, FIC fold transfer, transferase-protein binding complex; HET: TLA; 1.50A {Bartonella schoenbuchensis R1}
Probab=37.64  E-value=46  Score=24.67  Aligned_cols=39  Identities=15%  Similarity=0.187  Sum_probs=31.3

Q ss_pred             HHHhhhhcccccCCcCCHHHHHHHHhhccCCCCCchhHHHH
Q psy1740         380 YFQHIYHTVGIEGNSMSLAQTRSIVETRMAIGGKSIAEHNE  420 (505)
Q Consensus       380 ~~~~t~~s~~iEGntlt~~et~~il~~g~~~~g~~~~e~~e  420 (505)
                      -++..-+||.|||--.+ +++...++ ....|..+..|..+
T Consensus        13 avq~Aian~RLEGLEpd-~~~l~~~e-rwv~GEis~~e~i~   51 (61)
T 3shg_B           13 DARNALASQRLEGLEPD-PQVVAQME-RVVVGELETSDVIK   51 (61)
T ss_dssp             HHHHHHHHHHTTTCCCC-HHHHHHHH-HHHHTSSCHHHHHH
T ss_pred             HHHHHHHhhhhccCCCC-HHHHHHHH-HHHHccCCHHHHHH
Confidence            38999999999999998 77877777 66667777777654


No 29 
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=35.42  E-value=97  Score=25.78  Aligned_cols=34  Identities=18%  Similarity=0.206  Sum_probs=20.9

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCChhHHhHhhhh
Q psy1740         272 MKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEF  305 (505)
Q Consensus       272 ~~~~g~~~~~~~~f~~~~~~~~~~pdvl~~~r~~  305 (505)
                      +...|+++.+++.|..++.+.|.+++....++..
T Consensus        65 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   98 (148)
T 2vgx_A           65 RQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC   98 (148)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence            4456677777777777766666666655444443


No 30 
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=35.35  E-value=2.4e+02  Score=27.04  Aligned_cols=68  Identities=19%  Similarity=0.182  Sum_probs=44.7

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCChhHHhHhhhhhhhccccceechhhHHHHHhcCCcchHHHHHhHHH
Q psy1740         272 MKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQALVNRQRT  340 (505)
Q Consensus       272 ~~~~g~~~~~~~~f~~~~~~~~~~pdvl~~~r~~~~~~~~~vv~~d~~~~~al~~~p~~~~al~~~~rt  340 (505)
                      +...|+++.+++.|..++.+.+.++..+..++........ .-.+-..+-+++-..|....+...+...
T Consensus       206 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~P~~~~a~~~l~~~  273 (336)
T 1p5q_A          206 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVND-FELARADFQKVLQLYPNNKAAKTQLAVC  273 (336)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            6678999999999999999999888877666655432221 1123334445556667666655555444


No 31 
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=35.17  E-value=1.3e+02  Score=22.42  Aligned_cols=58  Identities=16%  Similarity=0.135  Sum_probs=37.6

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCChhHHhHhhhhhhhccccceechhhHHHHHhcCCcc
Q psy1740         272 MKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEH  330 (505)
Q Consensus       272 ~~~~g~~~~~~~~f~~~~~~~~~~pdvl~~~r~~~~~~~~~vv~~d~~~~~al~~~p~~  330 (505)
                      +...|+++.+++.|..++.+.+.++.+...++......+.. -.+-..+.+++-..|..
T Consensus        14 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A           14 LFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEY-TQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHTSCSST
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHhCCCc
Confidence            66889999999999999999998888776555544222211 12222333444455654


No 32 
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=34.71  E-value=1.7e+02  Score=23.18  Aligned_cols=69  Identities=17%  Similarity=0.127  Sum_probs=46.1

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCChhHHhHhhhhhhhccccceechhhHHHHHhcCCcchHHHHHhHH
Q psy1740         270 IEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQALVNRQR  339 (505)
Q Consensus       270 i~~~~~g~~~~~~~~f~~~~~~~~~~pdvl~~~r~~~~~~~~~vv~~d~~~~~al~~~p~~~~al~~~~r  339 (505)
                      ..+...|+++.+++.|..++...|.+++....++......+.. -.+-..+-+++-..|....+...+..
T Consensus        25 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~-~~A~~~~~~al~l~P~~~~~~~~la~   93 (121)
T 1hxi_A           25 LSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKD-GLAIIALNHARMLDPKDIAVHAALAV   93 (121)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            3467899999999999999999999998776666554332221 12333444555667776666655543


No 33 
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=33.92  E-value=1.1e+02  Score=23.73  Aligned_cols=33  Identities=15%  Similarity=0.074  Sum_probs=21.6

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCC---hhHHhHhhh
Q psy1740         272 MKKMGKIDKALKLFEHAFAIAPHN---PDVLNAYGE  304 (505)
Q Consensus       272 ~~~~g~~~~~~~~f~~~~~~~~~~---pdvl~~~r~  304 (505)
                      +...|+++.+++.|..++...+.+   ++.+..++.
T Consensus        49 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~   84 (129)
T 2xev_A           49 YYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL   84 (129)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence            556777888888888777776666   444444443


No 34 
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=33.49  E-value=1.6e+02  Score=24.33  Aligned_cols=68  Identities=9%  Similarity=0.023  Sum_probs=44.3

Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCChhHHhHhhhhhhhccccceechhhHHHHHhcCCcchHHHHHhHH
Q psy1740         271 EMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQALVNRQR  339 (505)
Q Consensus       271 ~~~~~g~~~~~~~~f~~~~~~~~~~pdvl~~~r~~~~~~~~~vv~~d~~~~~al~~~p~~~~al~~~~r  339 (505)
                      .+...|+++.+++.|..++...+.+++....++......+.. -.+-..+-+++...|....+...+..
T Consensus        30 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~l~p~~~~~~~~lg~   97 (148)
T 2vgx_A           30 NQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQY-DLAIHSYSYGAVMDIXEPRFPFHAAE   97 (148)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHSTTCTHHHHHHHH
T ss_pred             HHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhH-HHHHHHHHHHHhcCCCCchHHHHHHH
Confidence            367899999999999999999999998776555544322211 12223444555556766666555533


No 35 
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=31.27  E-value=98  Score=25.99  Aligned_cols=35  Identities=20%  Similarity=0.429  Sum_probs=29.9

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCChhHHhHhhhhh
Q psy1740         272 MKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFI  306 (505)
Q Consensus       272 ~~~~g~~~~~~~~f~~~~~~~~~~pdvl~~~r~~~  306 (505)
                      +...|+++.|++.|.+++.+.|.+++....++...
T Consensus        15 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   49 (184)
T 3vtx_A           15 KRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTY   49 (184)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            56789999999999999999999998876666554


No 36 
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=31.19  E-value=1.5e+02  Score=25.14  Aligned_cols=36  Identities=17%  Similarity=0.210  Sum_probs=30.9

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCChhHHhHhhhhhh
Q psy1740         272 MKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIE  307 (505)
Q Consensus       272 ~~~~g~~~~~~~~f~~~~~~~~~~pdvl~~~r~~~~  307 (505)
                      +...|+++.+++.|.+++.+.|.+++....++....
T Consensus        80 ~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~  115 (151)
T 3gyz_A           80 YQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL  115 (151)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence            678899999999999999999999998876666553


No 37 
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=29.06  E-value=2.6e+02  Score=24.31  Aligned_cols=68  Identities=26%  Similarity=0.222  Sum_probs=44.5

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCChhHHhHhhhhhhhccccceechhhHHHHHhcCCcchHHHHHhHHH
Q psy1740         272 MKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQALVNRQRT  340 (505)
Q Consensus       272 ~~~~g~~~~~~~~f~~~~~~~~~~pdvl~~~r~~~~~~~~~vv~~d~~~~~al~~~p~~~~al~~~~rt  340 (505)
                      +...|+++.+++.|..++.+.|.+++....++......+.. -.+...+-+++-..|....+...+...
T Consensus        64 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~P~~~~a~~~lg~~  131 (208)
T 3urz_A           64 YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQE-KDALRMYEKILQLEADNLAANIFLGNY  131 (208)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            56788999999999999988888888776666654332221 123334445556677776666665443


No 38 
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=28.82  E-value=74  Score=25.67  Aligned_cols=35  Identities=20%  Similarity=0.258  Sum_probs=28.6

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCChhHHhHhhhhh
Q psy1740         272 MKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFI  306 (505)
Q Consensus       272 ~~~~g~~~~~~~~f~~~~~~~~~~pdvl~~~r~~~  306 (505)
                      ++..|+++.+++.|..++.+.|.++......+...
T Consensus        18 ~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~   52 (127)
T 4gcn_A           18 AYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVY   52 (127)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHH
Confidence            67899999999999999999998887765444433


No 39 
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=26.58  E-value=1.7e+02  Score=20.72  Aligned_cols=35  Identities=23%  Similarity=0.484  Sum_probs=27.8

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCChhHHhHhhhhh
Q psy1740         272 MKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFI  306 (505)
Q Consensus       272 ~~~~g~~~~~~~~f~~~~~~~~~~pdvl~~~r~~~  306 (505)
                      +...|+++.+++.|..++...+.++++...++...
T Consensus        19 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~   53 (91)
T 1na3_A           19 YYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY   53 (91)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            56789999999999999998888777665555544


No 40 
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=25.73  E-value=2.1e+02  Score=26.83  Aligned_cols=63  Identities=10%  Similarity=0.035  Sum_probs=40.3

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCChhHHhHhhhhhhhccccceechhhHHHHHhcCCcchHHH
Q psy1740         272 MKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQAL  334 (505)
Q Consensus       272 ~~~~g~~~~~~~~f~~~~~~~~~~pdvl~~~r~~~~~~~~~vv~~d~~~~~al~~~p~~~~al  334 (505)
                      +...|+++.+.+.|..++...|.+++.+..++......+...-.+...+-+++-..|++....
T Consensus       210 ~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~  272 (291)
T 3mkr_A          210 HMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK  272 (291)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH
Confidence            668899999999999999999999998876665553333221011223323445666654433


No 41 
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=25.59  E-value=2.7e+02  Score=22.82  Aligned_cols=66  Identities=21%  Similarity=0.180  Sum_probs=41.5

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCChhHHhHhhhhhhhccccceechhhHHHHHhcCCcchHHHHHhH
Q psy1740         272 MKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQALVNRQ  338 (505)
Q Consensus       272 ~~~~g~~~~~~~~f~~~~~~~~~~pdvl~~~r~~~~~~~~~vv~~d~~~~~al~~~p~~~~al~~~~  338 (505)
                      +...|+++.+++.|..++.+.+.++.+...++........ .-.+-..+-+++-..|....+...+.
T Consensus        21 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~lg   86 (164)
T 3sz7_A           21 AMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQ-HEKAAEDAELATVVDPKYSKAWSRLG   86 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            6788999999999999999999888877655554422211 11222333345555566555554443


No 42 
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=25.52  E-value=1.2e+02  Score=23.18  Aligned_cols=35  Identities=23%  Similarity=0.312  Sum_probs=28.7

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCChhHHhHhhhhh
Q psy1740         272 MKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFI  306 (505)
Q Consensus       272 ~~~~g~~~~~~~~f~~~~~~~~~~pdvl~~~r~~~  306 (505)
                      +...|+++.+++.|..++.+.+.+++....++...
T Consensus        17 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~   51 (100)
T 3ma5_A           17 HLKHDNASRALALFEELVETDPDYVGTYYHLGKLY   51 (100)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            66889999999999999999988887665555544


No 43 
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=24.51  E-value=2.4e+02  Score=21.71  Aligned_cols=67  Identities=16%  Similarity=0.127  Sum_probs=41.6

Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCChhHHhHhhhhhhhccccceechhhHHHHHhcCCcchHHHHHhH
Q psy1740         271 EMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQALVNRQ  338 (505)
Q Consensus       271 ~~~~~g~~~~~~~~f~~~~~~~~~~pdvl~~~r~~~~~~~~~vv~~d~~~~~al~~~p~~~~al~~~~  338 (505)
                      .+...|+++.+++.|..++.+.+.++.+...++......+. .-.+-..+-+++-..|....+...+.
T Consensus        13 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~lg   79 (126)
T 3upv_A           13 EYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS-FPEAIADCNKAIEKDPNFVRAYIRKA   79 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            36789999999999999999998888877555544322211 11222233345555666555555443


No 44 
>1jy2_N Fibrinogen alpha chain; fragment E, disulfide bonds, asymmetry, coiled- coil, beta-sheet, blood clotting; 1.40A {Bos taurus} SCOP: h.1.8.1 PDB: 1jy3_N
Probab=23.71  E-value=91  Score=22.36  Aligned_cols=27  Identities=30%  Similarity=0.562  Sum_probs=21.4

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHhcC
Q psy1740         339 RTALVVEELDRDFLRKIDEKRDQVSSI  365 (505)
Q Consensus       339 rt~~l~eeld~~~L~~iD~~k~~l~~~  365 (505)
                      |..=|..+.|+++.++|+++++.|...
T Consensus        25 Rm~Glid~~~~d~~~RI~kl~~~L~~~   51 (53)
T 1jy2_N           25 RMKGLIDEVDQDFTSRINKLRDSLFNY   51 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence            455678899999999999999888654


No 45 
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=23.19  E-value=2.2e+02  Score=20.80  Aligned_cols=63  Identities=21%  Similarity=0.241  Sum_probs=39.2

Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCChh-HHhHhhhhhhhccccceechhhHHHHHhcCCcchHHH
Q psy1740         271 EMKKMGKIDKALKLFEHAFAIAPHNPD-VLNAYGEFIEETQSDIITADKMYFKALISYPEHGQAL  334 (505)
Q Consensus       271 ~~~~~g~~~~~~~~f~~~~~~~~~~pd-vl~~~r~~~~~~~~~vv~~d~~~~~al~~~p~~~~al  334 (505)
                      .+...|+++.+++.|..++...+.++. +...++......+. .-.+...+-+++-..|....+.
T Consensus         9 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            9 ELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGD-WQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCcHHHH
Confidence            467889999999999999998888887 66555554422211 1122233334445556544443


No 46 
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=22.44  E-value=1.7e+02  Score=28.61  Aligned_cols=46  Identities=22%  Similarity=0.264  Sum_probs=34.2

Q ss_pred             cCCHHHHHHHHHHHHHhCCC-ChhHHhHhhhhhhhccccceechhhH
Q psy1740         275 MGKIDKALKLFEHAFAIAPH-NPDVLNAYGEFIEETQSDIITADKMY  320 (505)
Q Consensus       275 ~g~~~~~~~~f~~~~~~~~~-~pdvl~~~r~~~~~~~~~vv~~d~~~  320 (505)
                      -|+.+++.+.|++++.+.+. +.++...|.+++-..+.+.-.+++..
T Consensus       217 gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L  263 (301)
T 3u64_A          217 GGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEAL  263 (301)
T ss_dssp             TCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHH
Confidence            48899999999999999995 49999999998854433332333333


No 47 
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=22.40  E-value=2.6e+02  Score=21.58  Aligned_cols=35  Identities=11%  Similarity=0.035  Sum_probs=28.4

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCChhHHhHhhhhh
Q psy1740         272 MKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFI  306 (505)
Q Consensus       272 ~~~~g~~~~~~~~f~~~~~~~~~~pdvl~~~r~~~  306 (505)
                      +...|+++.+++.|..++.+.+.+++....++...
T Consensus        48 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (126)
T 3upv_A           48 LAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            66789999999999999999888887665555544


No 48 
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=22.29  E-value=1.3e+02  Score=23.33  Aligned_cols=35  Identities=14%  Similarity=0.299  Sum_probs=27.9

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCChhHHhHhhhhh
Q psy1740         272 MKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFI  306 (505)
Q Consensus       272 ~~~~g~~~~~~~~f~~~~~~~~~~pdvl~~~r~~~  306 (505)
                      +...|+++.+++.|.+++.+.|.++++...++...
T Consensus        37 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   71 (117)
T 3k9i_A           37 FRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVL   71 (117)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            56789999999999999998888887765555544


No 49 
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=21.61  E-value=3.3e+02  Score=22.16  Aligned_cols=35  Identities=11%  Similarity=0.076  Sum_probs=29.5

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCChhHHhHhhhhh
Q psy1740         272 MKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFI  306 (505)
Q Consensus       272 ~~~~g~~~~~~~~f~~~~~~~~~~pdvl~~~r~~~  306 (505)
                      +...|+++.+++.|..++.+.+.++......+...
T Consensus        73 ~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~  107 (162)
T 3rkv_A           73 YLNIGDLHEAEETSSEVLKREETNEKALFRRAKAR  107 (162)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence            66789999999999999999999888776666554


No 50 
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=21.07  E-value=3.1e+02  Score=27.62  Aligned_cols=68  Identities=19%  Similarity=0.165  Sum_probs=41.4

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCChhHHhHhhhhhhhccccceechhhHHHHHhcCCcchHHHHHhHHH
Q psy1740         272 MKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQALVNRQRT  340 (505)
Q Consensus       272 ~~~~g~~~~~~~~f~~~~~~~~~~pdvl~~~r~~~~~~~~~vv~~d~~~~~al~~~p~~~~al~~~~rt  340 (505)
                      +...|+++.|++.|..++.+.+.++..+...+....... ..-.+-..+-+++-..|....+...+...
T Consensus       327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g-~~~~A~~~~~~al~l~P~~~~a~~~l~~~  394 (457)
T 1kt0_A          327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMN-EFESAKGDFEKVLEVNPQNKAARLQISMC  394 (457)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTC----CHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            668899999999999999999998887765555442221 11123334445555666655555554433


No 51 
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=20.27  E-value=2.5e+02  Score=21.73  Aligned_cols=66  Identities=14%  Similarity=-0.105  Sum_probs=40.4

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCChhHHhHhhhhhhhccccceechhhHHHHHhcCCcchHHHHHhH
Q psy1740         272 MKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQALVNRQ  338 (505)
Q Consensus       272 ~~~~g~~~~~~~~f~~~~~~~~~~pdvl~~~r~~~~~~~~~vv~~d~~~~~al~~~p~~~~al~~~~  338 (505)
                      +...|+++.+++.|..++...+.++++...++......+.. -.+-..+-+++-..|....+...+.
T Consensus        19 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~l~   84 (137)
T 3q49_B           19 LFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQP-EQALADCRRALELDGQSVKAHFFLG   84 (137)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHhCchhHHHHHHHH
Confidence            66889999999999999998888888775555544222111 1122233344445565555554443


Done!