RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1740
(505 letters)
>3cuc_A Protein of unknown function with A FIC domain; FIC protein family,
structural genomics, joint center for ST genomics, JCSG;
HET: MSE; 2.71A {Bacteroides thetaiotaomicron vpi-5482}
Length = 291
Score = 207 bits (528), Expect = 2e-63
Identities = 47/224 (20%), Positives = 98/224 (43%), Gaps = 21/224 (9%)
Query: 48 LRKIDEKRDQVSSIPESDP-ALCKAKKESYFQHIYHTVGIEGNSMSLAQTRSIVETRMAI 106
+ I + + S+ P L + + + Y++ +EGN+++ QT+ ++
Sbjct: 4 ISNIKQLYSKWKSLQPLKPEDLKRWNDKFKLEFNYNSNHLEGNTLTYGQTKLLLMFGETS 63
Query: 107 GGKSIAEHNEILGLDLALKYINNTLVNRVGDITVADLLEIHKRVLGFAD----------- 155
G S+ ++ E+ ++ L+ I ++ +T + + E+++ +L
Sbjct: 64 GNASLKDYEEMKAHNVGLEMIKQEAQDKERPLTESFIRELNRTILVQDYWKNAKTPDGQD 123
Query: 156 ---PLASGMFRRTQVFVGG-----HIPPTPPHIIPLMDEFIAWLNSDVA-LRMHPVRFAA 206
+ G ++ V +P M + W N + + PV AA
Sbjct: 124 IRMQIKVGEYKSRPNSVLTATGEVFSYASPEETPAFMTSLVDWYNLEADKGILTPVELAA 183
Query: 207 IAHYKLVHIHPFIDGNGRTSRLLMNLILMQAGFPPVIIPKHERH 250
+ HY+ + IHPF DGNGR +RLL+N +L + G+P ++I ++
Sbjct: 184 LLHYRYIRIHPFEDGNGRIARLLVNFVLHRYGYPMIVIHSEDKS 227
Score = 76.5 bits (188), Expect = 1e-15
Identities = 15/89 (16%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 352 LRKIDEKRDQVSSIPESDP-ALCKAKKESYFQHIYHTVGIEGNSMSLAQTRSIVETRMAI 410
+ I + + S+ P L + + + Y++ +EGN+++ QT+ ++
Sbjct: 4 ISNIKQLYSKWKSLQPLKPEDLKRWNDKFKLEFNYNSNHLEGNTLTYGQTKLLLMFGETS 63
Query: 411 GGKSIAEHNEILGLDLALKYINNTLVNSY 439
G S+ ++ E+ ++ L+ I +
Sbjct: 64 GNASLKDYEEMKAHNVGLEMIKQEAQDKE 92
>3n3u_A Ampylator IBPA, adenosine monophosphate-protein transferase IBPA;
FIC domain; 1.85A {Histophilus somni} PDB: 3n3v_A*
Length = 299
Score = 187 bits (475), Expect = 1e-55
Identities = 37/223 (16%), Positives = 90/223 (40%), Gaps = 10/223 (4%)
Query: 28 QALVNRQRTALVVEELDRDFLRKIDEKRDQVSSIPESDPALCKAKKESYFQHIYHTVGIE 87
+A V + +++ + +K++ + ++ + S ++ S Q + T+
Sbjct: 50 EATVKQMSHLPEFDDILTEGAKKVESRINKAITFRPS------VEEFSEIQDLVKTLPKT 103
Query: 88 GNSMSLAQTRSIVETRMAIGGKSIAEHNE-ILGLDLALKYINNTLVNRVGDITVADLLEI 146
L+ + + +A K+I E L A++ + +TV + +
Sbjct: 104 KVIEDLSTKTNEITEALAATSKTIQRTPELKEQLKTAIEDFLQNSQGK--PLTVQMIENL 161
Query: 147 HKRVLGFADPLASGMFRRTQVFVGGHIPPTPPHIIPLMDEFIAWLNSDVALRMHPVRFAA 206
+ + ++++ + + +P + E + ++N + P A
Sbjct: 162 NHGLRPDEGEGR-LLYKKENLTKENAVFSSPEAAKIQLAETVDFINRAKNEGIEPSVVGA 220
Query: 207 IAHYKLVHIHPFIDGNGRTSRLLMNLILMQAGFPPVIIPKHER 249
+ + +L+ HPF +GNGR +R+++N IL+ AG+P E
Sbjct: 221 LVYQRLIAYHPFAEGNGRMARVIVNKILLDAGYPAFTKFSDEF 263
Score = 59.7 bits (144), Expect = 5e-10
Identities = 15/123 (12%), Positives = 45/123 (36%), Gaps = 7/123 (5%)
Query: 302 YGEFIEETQSDIITADKMYFKALISY-PEHGQALVNRQRTALVVEELDRDFLRKIDEKRD 360
+ +S+++ +K +A +A V + +++ + +K++ + +
Sbjct: 19 EDDRNANFESNVLKNEKFLDEAREISKKSIPEATVKQMSHLPEFDDILTEGAKKVESRIN 78
Query: 361 QVSSIPESDPALCKAKKESYFQHIYHTVGIEGNSMSLAQTRSIVETRMAIGGKSIAEHNE 420
+ + S ++ S Q + T+ L+ + + +A K+I E
Sbjct: 79 KAITFRPS------VEEFSEIQDLVKTLPKTKVIEDLSTKTNEITEALAATSKTIQRTPE 132
Query: 421 ILG 423
+
Sbjct: 133 LKE 135
>3let_A Adenosine monophosphate-protein transferase VOPS; ampylation, FIC
domain, type III, effector, T3SS,
nucleotidyltransferase, virulence; 1.80A {Vibrio
parahaemolyticus}
Length = 314
Score = 105 bits (261), Expect = 3e-25
Identities = 30/184 (16%), Positives = 61/184 (33%), Gaps = 13/184 (7%)
Query: 72 KKESYFQHIYHTVGIEGNSMSLAQTRSIVETRMAIGGKSIAEHNEILGLDLALKYINNTL 131
Q +Y E T ++ I S ++ N+ + +
Sbjct: 142 ASTDLNQGVYAEGLPEDAFNKAGVTNNVERAAAWIINASNSKGNDAENIT---SLLKEYA 198
Query: 132 VNRVGDITVADLLEIHKRVLGFADPLASGMFRRTQVFVGGHIPPTPPHIIPLMDEFIAWL 191
N + + +L E+H R++ + G + G P+ ++ + I
Sbjct: 199 TNGKDLLNMDNLKELHARLVPNVERDYRG------PNISGGTLPSSIGGEGMLKQHIEGF 252
Query: 192 NSDVALRMHPVRFAAIAHYKLVHIHPFIDGNGRTSRLLMNLILMQAG-FPPVIIP-KHER 249
+ ++ H F DGNGR R+L + ++ F P+ + ++
Sbjct: 253 LK--ENPVADKDLGKHLFAGVIGYHGFTDGNGRMGRMLYAIAELRNDSFNPLAMNAENSL 310
Query: 250 HTIK 253
H IK
Sbjct: 311 HGIK 314
Score = 42.6 bits (99), Expect = 2e-04
Identities = 21/198 (10%), Positives = 54/198 (27%), Gaps = 22/198 (11%)
Query: 254 STPGTNIEALGTISAAIEMKKMGKIDKALKL-FEHAFAIAPHNPDVLNAYGE-FIEETQS 311
TP + A + + + ++ + + ++ G+ ++
Sbjct: 37 KTPSDVLNAFAKLDSKMVKSHAAELSQLAERAMTEVMLETDSGKNLKALIGDDAVKSLAV 96
Query: 312 DIITADKMYFKALISYPEHGQALVNRQRTALVVEELDRDFLRKIDEKRDQVSSIPESDPA 371
++ A PE + + ++ F ++ + +
Sbjct: 97 RVVKDYGGGVAAAQKNPE------------VRINQMQAVFDMEVMHLKA-------AQRH 137
Query: 372 LCKAKKESYFQHIYHTVGIEGNSMSLAQTRSIVETRMAIGGKSIAEHNEILGLDLALK-Y 430
+ Q +Y E T ++ I S ++ N+ + LK Y
Sbjct: 138 IEGLASTDLNQGVYAEGLPEDAFNKAGVTNNVERAAAWIINASNSKGNDAENITSLLKEY 197
Query: 431 INNTLVNSYYQVLEEANR 448
N L+E +
Sbjct: 198 ATNGKDLLNMDNLKELHA 215
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein,
structural genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis}
PDB: 3eqx_A*
Length = 373
Score = 98.8 bits (246), Expect = 9e-23
Identities = 41/158 (25%), Positives = 61/158 (38%), Gaps = 12/158 (7%)
Query: 86 IEGNSMSLAQTRSIVETRMAIGGKSIAEHNEILGLDLALKYINNTLVNRVGDITVADLLE 145
IE + + + ++ E L AL L NR + V LE
Sbjct: 73 IENIVTTTDK----LFQYAQEDSQADPMTKEALRYRTALYQCFTQLSNR--PLCVTTALE 126
Query: 146 IHKRVLGFA--DPLASGMFRRTQVFVGG-HIPPTPPHIIP-LMDEFIAWLNSDVALRMHP 201
I + G Q + PP +I L+ + A+L++ + P
Sbjct: 127 ICSTIKSVQMDVRKVPGTSLTNQATGEVIYTPPAGESVIRDLLSNWEAFLHNQDDV--DP 184
Query: 202 VRFAAIAHYKLVHIHPFIDGNGRTSRLLMNLILMQAGF 239
+ A+AHY+ IHPFIDGNGRT R+L L L+
Sbjct: 185 LIKMAMAHYQFEAIHPFIDGNGRTGRVLNILYLIDQQL 222
>2f6s_A Cell filamentation protein, putative; structural PSI, protein
structure initiative, midwest center for struc genomics,
MCSG; 2.50A {Helicobacter pylori} SCOP: a.265.1.1
Length = 201
Score = 94.8 bits (235), Expect = 1e-22
Identities = 25/138 (18%), Positives = 56/138 (40%), Gaps = 8/138 (5%)
Query: 113 EHNEILGLDLALKYINNTLVNRVGDITVADLLEIHKRVLGFADPLASGMFRRTQVFVGGH 172
H + L+ A I + L++ + T+ L EIH+ + A G R + G
Sbjct: 23 MHLDRQSLEKAKHLIQSGLIDTIEVGTIKGLQEIHRFLFEGLYEFA-GKIRDKNIAKGNF 81
Query: 173 IPPTPPHIIPLMDEFIAWLNSDVALRMHPVRFAAIAHYKLVHIHPFIDGNGRTSRLLMNL 232
++ ++ + + + ++ HPF++GNGR +R+ ++L
Sbjct: 82 RFANCLYLDLILPRIESMPQ-------NNFNQIVEKYVEMNIAHPFLEGNGRATRIWLDL 134
Query: 233 ILMQAGFPPVIIPKHERH 250
+L + V+ + ++
Sbjct: 135 LLKKELKKIVLWDRIDKA 152
>3se5_A Cell filamentation protein FIC-related protein; ampylation,
adenylylation, transferase; HET: ANP P6G; 1.70A
{Neisseria meningitidis}
Length = 164
Score = 77.1 bits (189), Expect = 7e-17
Identities = 25/140 (17%), Positives = 53/140 (37%), Gaps = 8/140 (5%)
Query: 111 IAEHNEILGLDLALKYINNTLVNRVGDITVADLLEIHKRVLGFADPLASGMFRRTQVFVG 170
+ + L A + + ++R+ T A L +IH+ + G A G R + G
Sbjct: 7 HMKSIDEQSLHNARRLFESGDIDRIEVGTTAGLQQIHRYLFGGLYDFA-GQIREDNISKG 65
Query: 171 GHIPPTPPHIIPLMDEFIAWLNSDVALRMHPVRFAAIAHYKLVHIHPFIDGNGRTSRLLM 230
G ++ + + + ++ HPF++GNGR++R+ +
Sbjct: 66 GFRFANAMYLKEALVKIEQMPE-------RTFEEIIAKYVEMNIAHPFLEGNGRSTRIWL 118
Query: 231 NLILMQAGFPPVIIPKHERH 250
+L+L + V +
Sbjct: 119 DLVLKKNLKKVVNWQNVSKT 138
>2jk8_A BEPA, putative cell filamentation protein (BEPA protein; T4SS, OB
fold, FIC domain, substrate protein, protein transl cell
adhesion; 2.80A {Bartonella henselae} PDB: 2vy3_A
2vza_A*
Length = 302
Score = 77.2 bits (189), Expect = 8e-16
Identities = 47/289 (16%), Positives = 80/289 (27%), Gaps = 36/289 (12%)
Query: 107 GGKSIAEHNEILGLDLALKYINNTLVNRVGDITVADLLEIHKRVLGFADPLASGMFRRTQ 166
G K++ E D A IN + A L IH+++ A +
Sbjct: 32 GIKNLNAFLEKCSHDTAKAMINLREESLPEYFDTAYLCHIHQQLFKNTFEWAGYLRHIPF 91
Query: 167 VFVGG--------------HIPPTPPHIIPLMDEFIAWLNSDVALRMHP----VRFAAIA 208
F G + I + L L+ A
Sbjct: 92 TFADGTTAAMPEMKRTGWKNAFAIGDEIQEGLQRLDQTLAEKNNLQGLTREEFNSEAIEL 151
Query: 209 HYKLVHIHPFIDGNGRTSRLLMNLILMQAGFPPVIIPKHERHTIKSTPGTNIEALGTISA 268
L +HPF +GNGRT RL + AG + + A
Sbjct: 152 FNSLNQLHPFREGNGRTQRLFFENLAKAAGHQLNFSLITKERMMV--------------A 197
Query: 269 AIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYP 328
++ + + G ++ LFE P +L + ++ T ++ M K +Y
Sbjct: 198 SVAVAENGDLEPMQHLFED--ISNPEKIRLLKEFMHTMKNTGRNVNDRPVMVAKEGETY- 254
Query: 329 EHGQALVNRQRTALVVEELDRDFLRKIDEKRDQVSSIPESDPALCKAKK 377
G + + +Q+ + D A K
Sbjct: 255 -TGTYRGAGLEGFALNVKGAYIIGNIDHLPPEQLKILKPGDKITFTAPK 302
>3shg_A VBHT; ampylation, adenylylation, toxin-antitoxin complex, FIC fold
transfer, transferase-protein binding complex; HET: TLA;
1.50A {Bartonella schoenbuchensis R1}
Length = 205
Score = 73.7 bits (180), Expect = 2e-15
Identities = 25/122 (20%), Positives = 44/122 (36%), Gaps = 5/122 (4%)
Query: 123 ALKYINNTLVNRVGDITVADLLEIHKRVLGFADPLASGMFRRTQVFVGGHIPPTPPHIIP 182
++ + G + + +IHK++ G A G R + I
Sbjct: 40 YIRSFELGRTSISGKFDLDHMKKIHKKLFGDVYEWA-GKTRLVDIVKDNSKFAHYTQIES 98
Query: 183 LMDEFIAWLNSDVALRMHP----VRFAAIAHYKLVHIHPFIDGNGRTSRLLMNLILMQAG 238
+ L + LR + A +L +HPF +GNGRT R + + +AG
Sbjct: 99 YAPQITQQLAREQHLRGLDANEFSQRAGYYMGELNALHPFREGNGRTLREFIWQLAREAG 158
Query: 239 FP 240
+
Sbjct: 159 YH 160
Score = 28.6 bits (63), Expect = 3.5
Identities = 4/31 (12%), Positives = 9/31 (29%)
Query: 437 NSYYQVLEEANRGDIRPFVRFIAPVTIKFSR 467
+ E+ G+ I +F+
Sbjct: 169 QEMTRASIESYYGNSDLMSALIRRNLTEFTH 199
>2g03_A Hypothetical protein NMA0004; cell filamentation, cell division,
chromosome partitioning, protein family, structural
genomics, PSI; 2.20A {Neisseria meningitidis} SCOP:
a.265.1.1 PDB: 3s6a_A* 3sn9_A*
Length = 194
Score = 72.1 bits (176), Expect = 8e-15
Identities = 25/135 (18%), Positives = 52/135 (38%), Gaps = 8/135 (5%)
Query: 116 EILGLDLALKYINNTLVNRVGDITVADLLEIHKRVLGFADPLASGMFRRTQVFVGGHIPP 175
+ L A + + ++R+ T A L +IH+ + G A G R + GG
Sbjct: 18 DEQSLHNARRLFESGDIDRIEVGTTAGLQQIHRYLFGGLYDFA-GQIREDNISKGGFRFA 76
Query: 176 TPPHIIPLMDEFIAWLNSDVALRMHPVRFAAIAHYKLVHIHPFIDGNGRTSRLLMNLILM 235
++ + + + ++ HPF++GNGR++R+ ++L+L
Sbjct: 77 NAMYLKEALVKIEQMPE-------RTFEEIIAKYVEMNIAHPFLEGNGRSTRIWLDLVLK 129
Query: 236 QAGFPPVIIPKHERH 250
+ V +
Sbjct: 130 KNLKKVVNWQNVSKT 144
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.2 bits (124), Expect = 4e-07
Identities = 50/373 (13%), Positives = 114/373 (30%), Gaps = 128/373 (34%)
Query: 3 CSIHPMVYFCLEEDLLALISYPEHGQALVNRQRTALVVEELDR-DFLRKIDEKRDQVSSI 61
+ +P L++I+ + + L D + ++ D++++I
Sbjct: 323 LTTNPRR--------LSIIA--------------ESIRDGLATWDNWKHVN--CDKLTTI 358
Query: 62 PESDPALCKAKKESYFQHIYHT-------VGIEGNSMSLAQTRSIVETRMAI----GGKS 110
ES + + ++ ++ I +SL I M + S
Sbjct: 359 IESS---LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Query: 111 IAEHN------EILGLDLALKYINNTLVNRVGDITVADLLEIHKRVLGFADPLASGMFRR 164
+ E I + L LK + + + +H+ ++ +
Sbjct: 416 LVEKQPKESTISIPSIYLELK------------VKLENEYALHRSIVDH--------YNI 455
Query: 165 TQVFVGGHIPPTPPHIIPLMDEFIAWLNSDVALRMHPVRFAAIAHYKLVHIHPFIDGNGR 224
+ F + P P +D++ H I H H+ I+ R
Sbjct: 456 PKTFDSDDLIP------PYLDQYFYS---------H------IGH----HLKN-IEHPER 489
Query: 225 TS---RLLMNLILMQAGFPPVIIPKHERHTIKSTPGTNIEALGTISAAIEMKKMGKIDKA 281
+ + ++ ++ RH T A G+I +
Sbjct: 490 MTLFRMVFLDFRFLEQKI---------RHD-----STAWNASGSILNTL-------QQ-- 526
Query: 282 LKLFE-HAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQALVNRQRT 340
LK ++ + P ++NA +F+ + + ++I + + L+ AL+
Sbjct: 527 LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK---YTDLLR-----IALMAEDEA 578
Query: 341 ALVVEELDRDFLR 353
+ EE + R
Sbjct: 579 --IFEEAHKQVQR 589
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 47.6 bits (114), Expect = 2e-06
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKAL--ISYPEH 330
+ + DKA + F A +I P + ++ N YG F+ + + + KAL +YP
Sbjct: 53 QYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTP 112
Query: 331 GQALVNR 337
A +N+
Sbjct: 113 YIANLNK 119
Score = 43.8 bits (104), Expect = 4e-05
Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 1/69 (1%)
Query: 269 AIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYP 328
A+E + +A E A P N I + A + + +AL P
Sbjct: 15 AMEYMRGQDYRQATASIEDALKSDPKNELAWLVRA-EIYQYLKVNDKAQESFRQALSIKP 73
Query: 329 EHGQALVNR 337
+ + N
Sbjct: 74 DSAEINNNY 82
Score = 37.6 bits (88), Expect = 0.004
Identities = 9/58 (15%), Positives = 15/58 (25%), Gaps = 1/58 (1%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEH 330
K G+ A + + A P P + + AD + K
Sbjct: 124 AKQGQFGLAEAYLKRSLAAQPQFPPAFKELAR-TKMLAGQLGDADYYFKKYQSRVEVL 180
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.7 bits (113), Expect = 8e-06
Identities = 53/318 (16%), Positives = 86/318 (27%), Gaps = 117/318 (36%)
Query: 217 PFI--DGNGRTS-----RLLMNLILMQAGFPPVIIPKHERHTIKSTPGTNIE--A--LGT 265
P G+ +Q F ++ E P T E LG
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY 67
Query: 266 ISAAIEMKKMGKIDKALKL----FEHAFAIAPHNPDV------LNAYGEFIEETQSDIIT 315
+S+ +E K+G+ D+ L L FE+ + D+ L + ++I
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFENCYL---EGNDIHALAAKLLQENDTTLVKTKELIK 124
Query: 316 ADKMYFKALISYPEHGQALVNRQRTALVVEELDRDFLRKIDEKRDQVSSIPESDPALCKA 375
Y A + R +S+ AL +A
Sbjct: 125 N---YITAR--------IMAKRPFD-------------------------KKSNSALFRA 148
Query: 376 KKESYFQHIYHTVGIEGNSMSLAQTRSIVETRMAI-GGKSIAEH--NEILGLDLALKYIN 432
E Q + AI GG+ + E L+ +
Sbjct: 149 VGEGNAQ-LV-----------------------AIFGGQGNTDDYFEE-------LRDLY 177
Query: 433 NTLVNSYYQVLEEANRGDIRPFVRFIAPVTIKFSRRPTEATF----GRSSASLL-NARTR 487
T Y VL + ++F A + R +A G + L N
Sbjct: 178 QT-----YHVL-------VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT 225
Query: 488 PS---ICSYGPHPSTLPL 502
P + S P + PL
Sbjct: 226 PDKDYLLSI---PISCPL 240
Score = 47.0 bits (111), Expect = 1e-05
Identities = 40/237 (16%), Positives = 72/237 (30%), Gaps = 86/237 (36%)
Query: 275 MGK-----IDKALKLFEHAFAIAPHNPD--VLNAYGEFIEETQSDIITADKMYFKALISY 327
MG A ++ A D + YG I DI+ + L +
Sbjct: 1631 MGMDLYKTSKAAQDVWNRA--------DNHFKDTYGFSI----LDIVINNP---VNLTIH 1675
Query: 328 --PEHGQALVNRQRTALVVEELDRD---FLRKIDEKRDQVSSI-----PESD-------- 369
E G+ + R+ + ++ E D KI ++ ++ S+ +
Sbjct: 1676 FGGEKGKRI--RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ 1733
Query: 370 PALC---KA-----KKESYFQHIY----HTVGIE-------GNSMSLAQTRSIVETR--- 407
PAL KA K + H++G E + MS+ +V R
Sbjct: 1734 PALTLMEKAAFEDLKSKGLIPADATFAGHSLG-EYAALASLADVMSIESLVEVVFYRGMT 1792
Query: 408 -----------------MAIGGKSIAEHNEILGLDLALKYINNTLVNSYYQVLEEAN 447
+AI +A + AL+Y+ + ++E N
Sbjct: 1793 MQVAVPRDELGRSNYGMIAINPGRVA---ASFSQE-ALQYVVERVGKRTGWLVEIVN 1845
Score = 45.4 bits (107), Expect = 5e-05
Identities = 49/254 (19%), Positives = 74/254 (29%), Gaps = 110/254 (43%)
Query: 7 PM--VYFCLEEDLLALISY-----PEHGQ---ALVNRQRTALVV----EELDR--DFLRK 50
PM + +E + ++ P Q +LVN LVV + L LRK
Sbjct: 337 PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN-GAKNLVVSGPPQSLYGLNLTLRK 395
Query: 51 I--DEKRDQVSSIPESDPALCKAKKESYFQH----I---YHTVGIEGNSMSLAQTRSIVE 101
DQ S IP S +++ F + + +H S L ++
Sbjct: 396 AKAPSGLDQ-SRIPFS-------ERKLKFSNRFLPVASPFH-------SHLLVPASDLIN 440
Query: 102 TRMAIGGKSIAEHNEILGLDLALKYINNTLVNRVGDITV------ADLLEIHKRVLGFAD 155
+ S D+ I V +DL RVL
Sbjct: 441 KDLVKNNVSFNAK------DIQ--------------IPVYDTFDGSDL-----RVLS--- 472
Query: 156 PLASGMFRRTQVFVGGHIPPTPPHIIPLMDEFIAWLNSDVALRMHPVRFAAIAHYKLVHI 215
G I I+ D +R+ PV++ +K HI
Sbjct: 473 ---------------GSISER---IV------------DCIIRL-PVKWETTTQFKATHI 501
Query: 216 HPFID-GNGRTSRL 228
+D G G S L
Sbjct: 502 ---LDFGPGGASGL 512
Score = 42.0 bits (98), Expect = 5e-04
Identities = 32/195 (16%), Positives = 60/195 (30%), Gaps = 58/195 (29%)
Query: 24 PEHGQALVNRQRTALVVEELDRD---FLRKIDEKRDQVSSI-----PESD--------PA 67
E G+ + R+ + ++ E D KI ++ ++ S+ + PA
Sbjct: 1678 GEKGKRI--RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPA 1735
Query: 68 LC---KA-----KKESYFQHIY----HTVGIE-------GNSMSLAQTRSIVETRMAIGG 108
L KA K + H++G E + MS+ +V R G
Sbjct: 1736 LTLMEKAAFEDLKSKGLIPADATFAGHSLG-EYAALASLADVMSIESLVEVVFYR----G 1790
Query: 109 KSIA---EHNEILGLDLALKYINNTLVNRVGDITVADLLEIHKRVLGFADPL-------A 158
++ +E+ + + IN V + L + +RV L
Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAINPGRV--AASFSQEALQYVVERVGKRTGWLVEIVNYNV 1848
Query: 159 SGMFRRTQVFVGGHI 173
Q G +
Sbjct: 1849 ENQ----QYVAAGDL 1859
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 46.5 bits (111), Expect = 8e-06
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKAL--ISYPEH 330
+ + A + + A A N VLN YG F+ E Q A + +A YPE
Sbjct: 82 QTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYE-QKRYEEAYQRLLEASQDTLYPER 140
Query: 331 GQALVN 336
+ N
Sbjct: 141 SRVFEN 146
Score = 43.8 bits (104), Expect = 6e-05
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 269 AIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYP 328
+ + G ++A A I P + D A + +T+ + AD+ Y KAL S
Sbjct: 44 GLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALA-VVFQTEMEPKLADEEYRKALASDS 102
Query: 329 EHGQALVN 336
+ + L N
Sbjct: 103 RNARVLNN 110
Score = 41.1 bits (97), Expect = 4e-04
Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQ 332
+M K +A + FE + + + P V + + + + + A + Y ++ +
Sbjct: 152 LQMKKPAQAKEYFEKSLRLNRNQPSVALEMAD-LLYKEREYVPARQYYDLFAQGGGQNAR 210
Query: 333 ALVNRQRTALVVEELD 348
+L+ R A V E+ D
Sbjct: 211 SLLLGIRLAKVFEDRD 226
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 45.1 bits (107), Expect = 2e-05
Identities = 12/77 (15%), Positives = 24/77 (31%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQ 332
G+ AL+++E + N G + T + +K L S +
Sbjct: 99 VCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQY 158
Query: 333 ALVNRQRTALVVEELDR 349
A + L ++
Sbjct: 159 ARYRDGLSKLFTTRYEK 175
Score = 43.2 bits (102), Expect = 6e-05
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 269 AIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYP 328
A+ KK DKA ++ AP+N D L A E ++ + A +MY K L
Sbjct: 61 ALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAE-MQVCRGQEKDALRMYEKILQLEA 119
Query: 329 EHGQALVNR 337
++ A +
Sbjct: 120 DNLAANIFL 128
Score = 34.7 bits (80), Expect = 0.037
Identities = 11/96 (11%), Positives = 26/96 (27%), Gaps = 17/96 (17%)
Query: 257 GTNIEALGTISAAIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIIT- 315
G +++ + + + G+ +A+ F A+ ++ S +
Sbjct: 1 GQSVDEM--LQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLAT 58
Query: 316 --------------ADKMYFKALISYPEHGQALVNR 337
A Y + L P + L
Sbjct: 59 ELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEAC 94
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 42.5 bits (100), Expect = 7e-05
Identities = 19/121 (15%), Positives = 36/121 (29%), Gaps = 11/121 (9%)
Query: 274 KMGKIDKALKLFEHAFAIAPHNPDVLNAYGE--FIEETQSDIITADKMYFKALISYPEHG 331
+L + A + N ++ A + + +Q M KAL
Sbjct: 56 WQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEI 115
Query: 332 QALVN-------RQRTALVVEELDR--DFLRKIDEKRDQVSSIPESDPALCKAKKESYFQ 382
AL+ + A +E + D + V SI + ++ E +
Sbjct: 116 TALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINMAKLLQRRSDLEHHHH 175
Query: 383 H 383
H
Sbjct: 176 H 176
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 43.6 bits (103), Expect = 1e-04
Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Query: 269 AIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYP 328
A + K D LF A P P+V N + E I ++D A K Y A+
Sbjct: 345 ACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAE-ILTDKNDFDKALKQYDLAIELEN 403
Query: 329 EHGQALVNR 337
+ V
Sbjct: 404 KLDGIYVGI 412
Score = 37.8 bits (88), Expect = 0.007
Identities = 16/77 (20%), Positives = 24/77 (31%), Gaps = 8/77 (10%)
Query: 269 AIEMKKMGKIDKALKLFEHAFAIAPHNPDVLN--------AYGEFIEETQSDIITADKMY 320
A + DKALK ++ A + + A T + I A +
Sbjct: 379 AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLL 438
Query: 321 FKALISYPEHGQALVNR 337
KA P QA +
Sbjct: 439 EKASKLDPRSEQAKIGL 455
Score = 37.8 bits (88), Expect = 0.008
Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 15/91 (16%)
Query: 261 EALGTISAAIEMK--------------KMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFI 306
A I AIE+ + F+ A + +N V G+ +
Sbjct: 255 GAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQ-M 313
Query: 307 EETQSDIITADKMYFKALISYPEHGQALVNR 337
+ A K + KA PE+ +
Sbjct: 314 NFILQNYDQAGKDFDKAKELDPENIFPYIQL 344
Score = 37.4 bits (87), Expect = 0.009
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 12/63 (19%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYG-EFIEETQSDIITADKMYFKALISYPEHG 331
+ ID+A+ LFE + +A + L A + Q + + S P
Sbjct: 460 LQQEDIDEAITLFEESADLARTMEEKLQAITFAEAAKVQ-----------QRIRSDPVLA 508
Query: 332 QAL 334
+ +
Sbjct: 509 KKI 511
Score = 35.1 bits (81), Expect = 0.049
Identities = 11/75 (14%), Positives = 24/75 (32%), Gaps = 1/75 (1%)
Query: 262 ALGTISAAIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYF 321
+G + + +A L E A + P + ++ Q DI A ++
Sbjct: 415 LVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLA-QMKLQQEDIDEAITLFE 473
Query: 322 KALISYPEHGQALVN 336
++ + L
Sbjct: 474 ESADLARTMEEKLQA 488
Score = 32.8 bits (75), Expect = 0.30
Identities = 22/224 (9%), Positives = 52/224 (23%), Gaps = 34/224 (15%)
Query: 261 EALGTISAAIEMK--------------KMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFI 306
+A+ + A+E+K +G + K +++ A + P VL
Sbjct: 24 DAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRA-SA 82
Query: 307 EETQSDIITADKMYFKALI----------SYPEHGQALVNRQRTALVVEELDRDFLRKID 356
E A + E + ++D +
Sbjct: 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTE 142
Query: 357 EKRDQVSSIPESDPALCKAKK-ESYFQHIYHTVGIEGNSMSLAQTRSIVETRMAIGGKSI 415
+ L S+F + S + ++ + +S
Sbjct: 143 LSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSP 202
Query: 416 AEHNEILG--------LDLALKYINNTLVNSYYQVLEEANRGDI 451
+++ + L N + + G
Sbjct: 203 ESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIF 246
Score = 30.5 bits (69), Expect = 1.6
Identities = 9/69 (13%), Positives = 20/69 (28%), Gaps = 2/69 (2%)
Query: 269 AIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYP 328
I A + + A + P + + + ++D + KAL
Sbjct: 244 GIFKFLKNDPLGAHEDIKKAIELFP-RVNSYIYMALIMAD-RNDSTEYYNYFDKALKLDS 301
Query: 329 EHGQALVNR 337
+ +R
Sbjct: 302 NNSSVYYHR 310
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 43.3 bits (101), Expect = 2e-04
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 269 AIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYP 328
A +++ GK+ +AL ++ A I+P D + G ++E D+ A + Y +A+ P
Sbjct: 50 ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE-MQDVQGALQCYTRAIQINP 108
Query: 329 EHGQALVNR 337
A N
Sbjct: 109 AFADAHSNL 117
Score = 41.3 bits (96), Expect = 7e-04
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 269 AIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYP 328
+K+M + AL+ + A I P D + ++ +I A Y AL P
Sbjct: 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD-SGNIPEAIASYRTALKLKP 142
Query: 329 EHGQALVNR 337
+ A N
Sbjct: 143 DFPDAYCNL 151
Score = 36.3 bits (83), Expect = 0.027
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 269 AIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYP 328
A ++ G I++A++L+ A + P + + + Q + A Y +A+ P
Sbjct: 16 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS-VLQQQGKLQEALMHYKEAIRISP 74
Query: 329 EHGQALVNR 337
A N
Sbjct: 75 TFADAYSNM 83
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 42.4 bits (100), Expect = 3e-04
Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 1/69 (1%)
Query: 269 AIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYP 328
A + K GK ++ F P P+V + E I + D TA K Y A
Sbjct: 351 ACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAE-ILTDRGDFDTAIKQYDIAKRLEE 409
Query: 329 EHGQALVNR 337
+ V
Sbjct: 410 VQEKIHVGI 418
Score = 37.8 bits (88), Expect = 0.008
Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 1/69 (1%)
Query: 269 AIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYP 328
A+ + + K F+ A + P P G+ + D A + + KA P
Sbjct: 283 ALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQ-MYFILQDYKNAKEDFQKAQSLNP 341
Query: 329 EHGQALVNR 337
E+ +
Sbjct: 342 ENVYPYIQL 350
Score = 37.4 bits (87), Expect = 0.010
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 10/65 (15%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQ 332
+M KID+A++LFE + +A + L A F E + K L + P
Sbjct: 473 LQMEKIDEAIELFEDSAILARTMDEKLQATT-FAEAAK---------IQKRLRADPIISA 522
Query: 333 ALVNR 337
+
Sbjct: 523 KMELT 527
Score = 37.0 bits (86), Expect = 0.015
Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Query: 269 AIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYP 328
++A+K +++A + P+ P + + D+ + KAL P
Sbjct: 32 GNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNIS-ACYISTGDLEKVIEFTTKALEIKP 90
Query: 329 EHGQALVNRQRTALVVEELDR 349
+H +AL+ R A E L
Sbjct: 91 DHSKALLRR---ASANESLGN 108
Score = 33.5 bits (77), Expect = 0.16
Identities = 10/69 (14%), Positives = 21/69 (30%), Gaps = 1/69 (1%)
Query: 269 AIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYP 328
K + A+KL A + P + ++ I A +++ + I
Sbjct: 435 DPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLA-QLKLQMEKIDEAIELFEDSAILAR 493
Query: 329 EHGQALVNR 337
+ L
Sbjct: 494 TMDEKLQAT 502
Score = 30.8 bits (70), Expect = 1.1
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 2/69 (2%)
Query: 269 AIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYP 328
I + A L + + + P P+ + + + + K + KA+ P
Sbjct: 250 GIFHFLKNNLLDAQVLLQESINLHP-TPNSYIFLALTLAD-KENSQEFFKFFQKAVDLNP 307
Query: 329 EHGQALVNR 337
E+ +R
Sbjct: 308 EYPPTYYHR 316
Score = 30.5 bits (69), Expect = 1.6
Identities = 9/65 (13%), Positives = 13/65 (20%), Gaps = 3/65 (4%)
Query: 276 GKIDKALKLFEHAFAIAP-HNPDVLNAYGE--FIEETQSDIITADKMYFKALISYPEHGQ 332
G ++P T + A K Y A+ P
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60
Query: 333 ALVNR 337
N
Sbjct: 61 FYSNI 65
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 42.1 bits (99), Expect = 3e-04
Identities = 15/76 (19%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
Query: 269 AIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKAL---- 324
++ ++G I A + + ++A+ ++P +LN G + +SD+ TA + AL
Sbjct: 448 GMQHMQLGNILLANEYLQSSYALFQYDPLLLNELG-VVAFNKSDMQTAINHFQNALLLVK 506
Query: 325 ---ISYPEHGQALVNR 337
+ N
Sbjct: 507 KTQSNEKPWAATWANL 522
Score = 38.7 bits (90), Expect = 0.004
Identities = 9/65 (13%), Positives = 21/65 (32%), Gaps = 1/65 (1%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQ 332
+K+ D A+ ++ ++ +V A + + A ++L P
Sbjct: 527 RKLKMYDAAIDALNQGLLLSTNDANVHTAIA-LVYLHKKIPGLAITHLHESLAISPNEIM 585
Query: 333 ALVNR 337
A
Sbjct: 586 ASDLL 590
Score = 37.5 bits (87), Expect = 0.009
Identities = 11/66 (16%), Positives = 20/66 (30%), Gaps = 3/66 (4%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYG-EFIEETQSDIITADKMYFKALISYPEHG 331
+ KI +A + F + + P + F E + D A Y A +
Sbjct: 384 LCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHD--QAISAYTTAARLFQGTH 441
Query: 332 QALVNR 337
+
Sbjct: 442 LPYLFL 447
Score = 37.1 bits (86), Expect = 0.015
Identities = 11/79 (13%), Positives = 26/79 (32%), Gaps = 3/79 (3%)
Query: 259 NIEALGTISAAIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADK 318
+ + L + A + + L + I P+N DV + + E+ +
Sbjct: 304 SSDLL--LCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESG-EKNKLYL 360
Query: 319 MYFKALISYPEHGQALVNR 337
+ + +PE +
Sbjct: 361 ISNDLVDRHPEKAVTWLAV 379
Score = 36.0 bits (83), Expect = 0.031
Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 3/80 (3%)
Query: 258 TNIEALGTISAAIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITAD 317
N++ A+ + + G+ +K + P A G + + I A
Sbjct: 337 YNLDVYPLHLAS--LHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLC-VNKISEAR 393
Query: 318 KMYFKALISYPEHGQALVNR 337
+ + K+ P+ G A +
Sbjct: 394 RYFSKSSTMDPQFGPAWIGF 413
Score = 31.7 bits (72), Expect = 0.65
Identities = 6/36 (16%), Positives = 12/36 (33%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEE 308
A+ + AI+P+ + +EE
Sbjct: 561 LHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596
Score = 29.8 bits (67), Expect = 2.7
Identities = 8/73 (10%), Positives = 21/73 (28%), Gaps = 9/73 (12%)
Query: 269 AIEMKKMGKIDKALKLFEHAFAIAPHNPDVLN----AYGEFIEETQSDIITADKMYFKAL 324
A G+ D+A+ + A + + + +I+ A++ +
Sbjct: 414 AHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQ-----LGNILLANEYLQSSY 468
Query: 325 ISYPEHGQALVNR 337
+ L
Sbjct: 469 ALFQYDPLLLNEL 481
Score = 29.4 bits (66), Expect = 3.4
Identities = 7/58 (12%), Positives = 18/58 (31%)
Query: 246 KHERHTIKSTPGTNIEALGTISAAIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYG 303
K+ + G +EA + D+A + ++ A + + +
Sbjct: 184 KNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLV 241
Score = 28.3 bits (63), Expect = 6.4
Identities = 7/64 (10%), Positives = 17/64 (26%), Gaps = 1/64 (1%)
Query: 274 KMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQA 333
+ + + + + D+L + +S I + K L P +
Sbjct: 283 SHEDELRRAEDYLSSINGLEKSSDLLLCKAD-TLFVRSRFIDVLAITTKILEIDPYNLDV 341
Query: 334 LVNR 337
Sbjct: 342 YPLH 345
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 39.3 bits (92), Expect = 4e-04
Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 21/85 (24%)
Query: 275 MGKIDKALKLFEHAFAIAPHNPDVLNAY----------GEFIEETQSDIITADKMYFKAL 324
+G +A+ +E A A D+ Y GE+ + A+ + +
Sbjct: 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRK--------AEAVLANGV 54
Query: 325 ISYPEHGQALVNRQRTALVVEELDR 349
+P H V A+V+ L R
Sbjct: 55 KQFPNHQALRVFY---AMVLYNLGR 76
Score = 33.2 bits (76), Expect = 0.056
Identities = 5/31 (16%), Positives = 13/31 (41%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYG 303
+ +G+ KA + + P++ + Y
Sbjct: 38 RTLGEYRKAEAVLANGVKQFPNHQALRVFYA 68
Score = 26.6 bits (59), Expect = 8.9
Identities = 6/39 (15%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 269 AIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIE 307
A+ + +G+ ++ ++L A + + +Y + I
Sbjct: 68 AMVLYNLGRYEQGVELLLKIIAETSDDET-IQSYKQAIL 105
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 41.1 bits (97), Expect = 5e-04
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 270 IEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPE 329
+E A + F A +IAP +P V++ G + + TA+K + AL
Sbjct: 167 LEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGV-VAFQNGEWKTAEKWFLDALEKIKA 225
Query: 330 HGQALVN 336
G +
Sbjct: 226 IGNEVTV 232
Score = 40.4 bits (95), Expect = 0.001
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 4/78 (5%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQ 332
+K+ K +AL A + P N +A G +I + A + AL +
Sbjct: 247 RKLKKYAEALDYHRQALVLIPQNASTYSAIG-YIHSLMGNFENAVDYFHTALGLRRDDTF 305
Query: 333 ALVNRQRTALVVEELDRD 350
++ +E D
Sbjct: 306 SVTML---GHCIEMYIGD 320
Score = 36.5 bits (85), Expect = 0.016
Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 2/80 (2%)
Query: 258 TNIEALGTISAAIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITAD 317
+ L + ++ K ++ L + P NP A G + A
Sbjct: 54 FHASCLPVHIGT--LVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHAR 111
Query: 318 KMYFKALISYPEHGQALVNR 337
+ KA +G A +
Sbjct: 112 RYLSKATTLEKTYGPAWIAY 131
Score = 35.7 bits (83), Expect = 0.030
Identities = 11/79 (13%), Positives = 22/79 (27%), Gaps = 3/79 (3%)
Query: 259 NIEALGTISAAIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADK 318
N++ + +S A KL P + L + + E
Sbjct: 21 NLDVV--VSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELN-KANELFY 77
Query: 319 MYFKALISYPEHGQALVNR 337
+ K + YP + +
Sbjct: 78 LSHKLVDLYPSNPVSWFAV 96
Score = 28.0 bits (63), Expect = 8.4
Identities = 9/57 (15%), Positives = 16/57 (28%), Gaps = 1/57 (1%)
Query: 281 ALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQALVNR 337
+ + + N DV+ + E D K+ + P H L
Sbjct: 7 SETVIPESVDGLQENLDVVVSLAE-RHYYNCDFKMCYKLTSVVMEKDPFHASCLPVH 62
Score = 27.6 bits (62), Expect = 9.3
Identities = 10/70 (14%), Positives = 24/70 (34%), Gaps = 3/70 (4%)
Query: 269 AIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYG-EFIEETQSDIITADKMYFKALISY 327
+ D+A+ + A + + G E+ ++ A++ + +AL
Sbjct: 132 GHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL--TNNSKLAERFFSQALSIA 189
Query: 328 PEHGQALVNR 337
PE +
Sbjct: 190 PEDPFVMHEV 199
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 41.1 bits (96), Expect = 7e-04
Identities = 11/72 (15%), Positives = 22/72 (30%), Gaps = 3/72 (4%)
Query: 268 AAIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYG---EFIEETQSDIITADKMYFKAL 324
A+ + A+ A + P N + + E + +K+ +AL
Sbjct: 181 ASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEAL 240
Query: 325 ISYPEHGQALVN 336
P L +
Sbjct: 241 EKAPGVTDVLRS 252
Score = 40.3 bits (94), Expect = 0.001
Identities = 12/87 (13%), Positives = 24/87 (27%), Gaps = 18/87 (20%)
Query: 268 AAIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYG-----------EFIEETQSDIITA 316
AA ++ + DKA++L + A P+N + G E
Sbjct: 253 AAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKL 312
Query: 317 DKMYFKALISY-------PEHGQALVN 336
++ A+ +
Sbjct: 313 LELIGHAVAHLKKADEANDNLFRVCSI 339
Score = 39.5 bits (92), Expect = 0.002
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQ 332
++ + + KL E A AP DVL + +F + + A ++ KAL P +
Sbjct: 224 EEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRR-KDEPDKAIELLKKALEYIPNNAY 282
Query: 333 ALVN 336
Sbjct: 283 LHCQ 286
Score = 39.1 bits (91), Expect = 0.002
Identities = 12/81 (14%), Positives = 24/81 (29%), Gaps = 2/81 (2%)
Query: 259 NIEALGTISAAIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGE--FIEETQSDIITA 316
+ E + ++A FE A P NP+ + + + A
Sbjct: 135 SPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNA 194
Query: 317 DKMYFKALISYPEHGQALVNR 337
+A+ P++ V
Sbjct: 195 IDPLRQAIRLNPDNQYLKVLL 215
Score = 31.8 bits (72), Expect = 0.60
Identities = 6/32 (18%), Positives = 11/32 (34%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGE 304
+ K+ +A + E P + GE
Sbjct: 441 ELNEKMQQADEDSERGLESGSLIPSASSWNGE 472
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 40.6 bits (96), Expect = 0.001
Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 1/74 (1%)
Query: 264 GTISAAIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKA 323
G + A + G + A + + P N VL I + + A
Sbjct: 1 GPMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLS-SIHFQCRRLDRSAHFSTLA 59
Query: 324 LISYPEHGQALVNR 337
+ P +A N
Sbjct: 60 IKQNPLLAEAYSNL 73
Score = 39.4 bits (93), Expect = 0.002
Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQ 332
+ ++D++ A P + + G + + + + A + Y AL P+
Sbjct: 44 FQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGN-VYKERGQLQEAIEHYRHALRLKPDFID 102
Query: 333 ALVNR 337
+N
Sbjct: 103 GYINL 107
Score = 38.3 bits (90), Expect = 0.005
Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQ 332
++ G I++A++L+ A + P + + + Q + A Y +A+ P
Sbjct: 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLA-SVLQQQGKLQEALMHYKEAIRISPTFAD 374
Query: 333 ALVNR 337
A N
Sbjct: 375 AYSNM 379
Score = 37.9 bits (89), Expect = 0.006
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQ 332
+ G ID A+ + A + PH PD + + + A+ Y AL P H
Sbjct: 248 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLA-NALKEKGSVAEAEDCYNTALRLCPTHAD 306
Query: 333 ALVNR 337
+L N
Sbjct: 307 SLNNL 311
Score = 36.8 bits (86), Expect = 0.016
Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQ 332
K+ G++ +A++ + HA + P D D+ A + Y AL P+
Sbjct: 78 KERGQLQEAIEHYRHALRLKPDFIDGYINLA-AALVAAGDMEGAVQAYVSALQYNPDLYC 136
Query: 333 ALVNR 337
+
Sbjct: 137 VRSDL 141
Score = 36.4 bits (85), Expect = 0.020
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQ 332
G ++ A++ + A P V + G ++ + A Y KA+ + P
Sbjct: 112 VAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKA-LGRLEEAKACYLKAIETQPNFAV 170
Query: 333 ALVNR 337
A N
Sbjct: 171 AWSNL 175
Score = 35.2 bits (82), Expect = 0.047
Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQ 332
G+I A+ FE A + P+ D G ++E A Y +AL P H
Sbjct: 180 NAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKE-ARIFDRAVAAYLRALSLSPNHAV 238
Query: 333 ALVNR 337
N
Sbjct: 239 VHGNL 243
Score = 34.4 bits (80), Expect = 0.081
Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQ 332
K +G++++A + A P+ + G + Q +I A + KA+ P
Sbjct: 146 KALGRLEEAKACYLKAIETQPNFAVAWSNLGC-VFNAQGEIWLAIHHFEKAVTLDPNFLD 204
Query: 333 ALVNR 337
A +N
Sbjct: 205 AYINL 209
Score = 34.1 bits (79), Expect = 0.099
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQ 332
K+ D+A+ + A +++P++ V E Q I A Y +A+ P
Sbjct: 214 KEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE-QGLIDLAIDTYRRAIELQPHFPD 272
Query: 333 ALVNR 337
A N
Sbjct: 273 AYCNL 277
Score = 30.6 bits (70), Expect = 1.4
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYG 303
++ GK+ +AL ++ A I+P D + G
Sbjct: 350 QQQGKLQEALMHYKEAIRISPTFADAYSNMG 380
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 40.4 bits (94), Expect = 0.001
Identities = 13/62 (20%), Positives = 23/62 (37%)
Query: 276 GKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQALV 335
+++K L+ E A L G+ + T A+ + KA+ PE +A
Sbjct: 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWN 141
Query: 336 NR 337
Sbjct: 142 QL 143
Score = 34.6 bits (79), Expect = 0.077
Identities = 11/93 (11%), Positives = 24/93 (25%), Gaps = 9/93 (9%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYG--------EFIEETQSDIITADKMYFKAL 324
K G + A F A N L + +E ++ + + A+
Sbjct: 148 WKKGDVTSAHTCFSGALTHCK-NKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAV 206
Query: 325 ISYPEHGQALVNRQRTALVVEELDRDFLRKIDE 357
G++ L + + +
Sbjct: 207 QMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239
Score = 32.3 bits (73), Expect = 0.41
Identities = 13/115 (11%), Positives = 34/115 (29%), Gaps = 8/115 (6%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAY---GEFIEETQSDIITADKMYFKALISYPE 329
+ +AL + A + + + + + + A + + +A P
Sbjct: 232 QNPKISQQALSAYAQAEKVDRKASSNPDLHLNRA-TLHKYEESYGEALEGFSQAAALDPA 290
Query: 330 HGQALVNRQRTALVVEELDR--DFLRKIDEKRDQ--VSSIPESDPALCKAKKESY 380
+ Q+ + L + K K+ Q + S+ + C +
Sbjct: 291 WPEPQQREQQLLEFLSRLTSLLESKGKTKPKKLQSMLGSLRPAHLGPCGDGRYQS 345
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 40.2 bits (94), Expect = 0.001
Identities = 13/77 (16%), Positives = 25/77 (32%), Gaps = 4/77 (5%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQ 332
MG + A+ P +P+ + G Q A + +A + PEH
Sbjct: 34 LGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWT-QQRHAEAAVLLQQASDAAPEHPG 92
Query: 333 ALVNRQRTALVVEELDR 349
+ +E+ +
Sbjct: 93 IALWL---GHALEDAGQ 106
Score = 32.5 bits (74), Expect = 0.34
Identities = 5/31 (16%), Positives = 11/31 (35%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYG 303
+ G+ + A + A + P P +
Sbjct: 102 EDAGQAEAAAAAYTRAHQLLPEEPYITAQLL 132
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural
protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Length = 308
Score = 39.3 bits (91), Expect = 0.002
Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 266 ISAAIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALI 325
+A +E A K+FE P+ + AY +++ ++ ++ + L
Sbjct: 173 TAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH-LNEDNNTRVLFERVLT 231
Query: 326 SYP 328
S
Sbjct: 232 SGS 234
Score = 31.9 bits (72), Expect = 0.37
Identities = 11/64 (17%), Positives = 18/64 (28%)
Query: 266 ISAAIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALI 325
I ++ I +F+ A A V D A K++ L
Sbjct: 138 IQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK 197
Query: 326 SYPE 329
Y +
Sbjct: 198 KYGD 201
Score = 28.1 bits (62), Expect = 7.3
Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 2/71 (2%)
Query: 266 ISAAIEMKKMGKIDKALKLFEHAFAIAPHNPD-VLNAYGEFIEETQSDIITADKMYFKAL 324
+ A + K +K ++ AI +P V Y +F I + ++ KA
Sbjct: 103 FAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKF-ARRAEGIKSGRMIFKKAR 161
Query: 325 ISYPEHGQALV 335
V
Sbjct: 162 EDARTRHHVYV 172
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 37.8 bits (88), Expect = 0.002
Identities = 11/69 (15%), Positives = 22/69 (31%), Gaps = 1/69 (1%)
Query: 269 AIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYP 328
A + G+I++A F +N D + I + + A +Y A
Sbjct: 43 AYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAA-IYQIKEQFQQAADLYAVAFALGK 101
Query: 329 EHGQALVNR 337
+ +
Sbjct: 102 NDYTPVFHT 110
Score = 30.5 bits (69), Expect = 0.56
Identities = 6/33 (18%), Positives = 15/33 (45%)
Query: 272 MKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGE 304
+ + +A L+ AFA+ ++ + G+
Sbjct: 80 YQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQ 112
Score = 29.4 bits (66), Expect = 1.5
Identities = 5/29 (17%), Positives = 10/29 (34%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNA 301
++ KA + FE + + A
Sbjct: 115 LRLKAPLKAKECFELVIQHSNDEKLKIKA 143
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural
protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Length = 530
Score = 39.5 bits (91), Expect = 0.002
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 268 AAIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKAL 324
A +E A K+FE P+ + AY ++ ++ ++ + L
Sbjct: 397 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDY-LSHLNEDNNTRVLFERVL 452
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 38.5 bits (90), Expect = 0.004
Identities = 8/66 (12%), Positives = 21/66 (31%), Gaps = 3/66 (4%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGE-FIEETQSDIITADKMYFKALISYPEHG 331
+ A+ + + P+N L A + + A + + P++
Sbjct: 110 AENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQ--DACEALKNWIKQNPKYK 167
Query: 332 QALVNR 337
+ N+
Sbjct: 168 YLVKNK 173
Score = 32.7 bits (75), Expect = 0.25
Identities = 12/76 (15%), Positives = 27/76 (35%), Gaps = 15/76 (19%)
Query: 269 AIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISY- 327
++ K G + + E A P + + G TQ++ + A+++
Sbjct: 72 GLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLG----ITQAEN----ENEQAAIVALQ 123
Query: 328 ------PEHGQALVNR 337
P + +AL+
Sbjct: 124 RCLELQPNNLKALMAL 139
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A {Salinibacter
ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 36.1 bits (84), Expect = 0.004
Identities = 20/85 (23%), Positives = 26/85 (30%), Gaps = 3/85 (3%)
Query: 269 AIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYP 328
A E K +AL LFE P G+ E A Y + +
Sbjct: 14 AQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYER-LDRTDDAIDTYAQGIEVAR 72
Query: 329 EHG--QALVNRQRTALVVEELDRDF 351
E G + L Q L E L+
Sbjct: 73 EEGTQKDLSELQDAKLKAEGLEHHH 97
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 38.0 bits (89), Expect = 0.004
Identities = 12/65 (18%), Positives = 19/65 (29%), Gaps = 1/65 (1%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQ 332
G A++ E +P V G + + AD + K L P
Sbjct: 119 YNKGNFPLAIQYMEKQIRPTTTDPKVFYELG-QAYYYNKEYVKADSSFVKVLELKPNIYI 177
Query: 333 ALVNR 337
+ R
Sbjct: 178 GYLWR 182
Score = 35.7 bits (83), Expect = 0.027
Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 10/75 (13%)
Query: 269 AIEMKKMGKIDKALKLFEHAFAIAPHNPDVLN----AYGEF--IEETQSDIITADKMYFK 322
A + K +A+++F A ++P + N Y E + Q DI + YF
Sbjct: 10 ADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDI----ETYFS 65
Query: 323 ALISYPEHGQALVNR 337
+ +
Sbjct: 66 KVNATKAKSADFEYY 80
Score = 32.6 bits (75), Expect = 0.23
Identities = 8/65 (12%), Positives = 20/65 (30%), Gaps = 1/65 (1%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQ 332
K G+ A++ ++ A D+ G + + + A + K + +
Sbjct: 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN-KGNFPLAIQYMEKQIRPTTTDPK 143
Query: 333 ALVNR 337
Sbjct: 144 VFYEL 148
Score = 30.3 bits (69), Expect = 1.3
Identities = 6/36 (16%), Positives = 13/36 (36%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEE 308
KA +++ A+ P N ++ +E
Sbjct: 232 TINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267
Score = 28.4 bits (64), Expect = 4.9
Identities = 10/71 (14%), Positives = 18/71 (25%), Gaps = 2/71 (2%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLN--AYGEFIEETQSDIITADKMYFKALISYPEH 330
+ KA F + P+ A ++ + A Y K +
Sbjct: 153 YYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPG 212
Query: 331 GQALVNRQRTA 341
G + A
Sbjct: 213 GAKYKDELIEA 223
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 36.3 bits (84), Expect = 0.006
Identities = 9/69 (13%), Positives = 20/69 (28%), Gaps = 1/69 (1%)
Query: 269 AIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYP 328
+ GK D A K+F+ + ++ G + A + Y +
Sbjct: 25 GFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS-LGLYEQALQSYSYGALMDI 83
Query: 329 EHGQALVNR 337
+ +
Sbjct: 84 NEPRFPFHA 92
Score = 32.8 bits (75), Expect = 0.11
Identities = 10/81 (12%), Positives = 27/81 (33%), Gaps = 1/81 (1%)
Query: 269 AIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYP 328
+ +G ++AL+ + + + + P E + D+ A+ ++ A
Sbjct: 59 GACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ-LGDLDGAESGFYSARALAA 117
Query: 329 EHGQALVNRQRTALVVEELDR 349
R ++E +
Sbjct: 118 AQPAHEALAARAGAMLEAVTA 138
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 291
Score = 37.8 bits (87), Expect = 0.006
Identities = 19/110 (17%), Positives = 38/110 (34%), Gaps = 6/110 (5%)
Query: 276 GKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQALV 335
K+ A +F+ +LN Q A+ + +AL H + L+
Sbjct: 180 EKLQDAYYIFQEMADKCSPTLLLLNGQAA-CHMAQGRWEAAEGVLQEALDKDSGHPETLI 238
Query: 336 NRQRTALVVEELDRDFLRKIDEKRDQVSSIPESDPALCK-AKKESYFQHI 384
N ++ + L + + Q+ S P + + KE+ F +
Sbjct: 239 NL---VVLSQHLGKP-PEVTNRYLSQLKDAHRSHPFIKEYRAKENDFDRL 284
Score = 35.9 bits (82), Expect = 0.023
Identities = 7/62 (11%), Positives = 19/62 (30%)
Query: 269 AIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYP 328
A G+ + A + + A +P+ L + ++ + ++
Sbjct: 207 AACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266
Query: 329 EH 330
H
Sbjct: 267 SH 268
Score = 35.5 bits (81), Expect = 0.034
Identities = 7/65 (10%), Positives = 17/65 (26%), Gaps = 1/65 (1%)
Query: 274 KMGKIDKALKLFEHAFAIAPHNPDVLNAYGEF-IEETQSDIITADKMYFKALISYPEHGQ 332
K+ ++D A K + A + + A ++ +
Sbjct: 142 KLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLL 201
Query: 333 ALVNR 337
L +
Sbjct: 202 LLNGQ 206
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha
subunit; ftase, farnesyltransferase, farnesyl
transferase, prenyltransferase, CAAX, RAS, lipid
modification, prenylation; HET: SUC FAR; 1.50A {Homo
sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A*
1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A*
2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A*
3ksq_A* 1o1t_A* 1o1s_A* ...
Length = 382
Score = 37.7 bits (87), Expect = 0.007
Identities = 14/78 (17%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 272 MKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHG 331
+++ + ++A KL A + N V + ++ Q D+ + P++
Sbjct: 107 LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY 166
Query: 332 QALVNRQRTALVVEELDR 349
Q +R+ ++VE L
Sbjct: 167 QVWHHRR---VLVEWLRD 181
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 35.9 bits (83), Expect = 0.007
Identities = 11/68 (16%), Positives = 19/68 (27%), Gaps = 1/68 (1%)
Query: 269 AIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYP 328
+ M K+ + +A FE P + + G E A A + P
Sbjct: 24 GLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE-NEKDGLAIIALNHARMLDP 82
Query: 329 EHGQALVN 336
+
Sbjct: 83 KDIAVHAA 90
Score = 35.1 bits (81), Expect = 0.010
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGE-FIEETQSDIITADKMYFKALISYPEHG 331
+ K A+ HA + P + V A E ++ A L+S P++
Sbjct: 62 AENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNAN--AALASLRAWLLSQPQYE 119
Query: 332 Q 332
Q
Sbjct: 120 Q 120
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.1 bits (82), Expect = 0.010
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 11/39 (28%)
Query: 271 EMKKMGKIDKALKLFEHAFAIAPHN-PDV-LNAYGEFIE 307
E + + K+ +LKL+ A + P + + A +E
Sbjct: 18 EKQALKKLQASLKLY------ADDSAPALAIKAT---ME 47
Score = 36.1 bits (82), Expect = 0.010
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 11/36 (30%)
Query: 44 DRDFLRKIDEKRDQVSSI----PESDPALC-KAKKE 74
++ L+K+ +S+ +S PAL KA E
Sbjct: 18 EKQALKKLQ------ASLKLYADDSAPALAIKATME 47
Score = 36.1 bits (82), Expect = 0.010
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 11/36 (30%)
Query: 348 DRDFLRKIDEKRDQVSSI----PESDPALC-KAKKE 378
++ L+K+ +S+ +S PAL KA E
Sbjct: 18 EKQALKKLQ------ASLKLYADDSAPALAIKATME 47
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat,
CLP1, PCF11, structural protein; 2.30A {Kluyveromyces
lactis} PDB: 4e85_A 4eba_A
Length = 679
Score = 37.3 bits (85), Expect = 0.011
Identities = 16/106 (15%), Positives = 33/106 (31%), Gaps = 3/106 (2%)
Query: 284 LFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHG---QALVNRQRT 340
++ A P++ + E +D K P +L +
Sbjct: 331 VYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYEL 390
Query: 341 ALVVEELDRDFLRKIDEKRDQVSSIPESDPALCKAKKESYFQHIYH 386
+ E++ L ID ++++ E DP A + + Y
Sbjct: 391 NTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYV 436
Score = 34.6 bits (78), Expect = 0.087
Identities = 9/66 (13%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
Query: 268 AAIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISY 327
A IE A K+ E + + +N Y +F+ ++ ++ ++
Sbjct: 476 AYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFL-IYVNEESQVKSLFESSIDKI 534
Query: 328 PEHGQA 333
+
Sbjct: 535 SDSHLL 540
Score = 31.2 bits (69), Expect = 0.97
Identities = 11/113 (9%), Positives = 34/113 (30%), Gaps = 6/113 (5%)
Query: 272 MKKMGKIDKALKLFEHAFAIAPHNPD---VLNAYGEFIEETQSDIITADKMYFKALISYP 328
+ + + + LFE + + + F E + + + + +P
Sbjct: 514 LIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFF-ESKVGSLNSVRTLEKRFFEKFP 572
Query: 329 EHG--QALVNRQRTALVVEELDRDFLRKIDEKRDQVSSIPESDPALCKAKKES 379
E + N+ + V + + + + ++ L + +E
Sbjct: 573 EVNKLEEFTNKYKVLDVNYLQRLELDYMVRDVMPEAIALDRGSNNLKRTMREE 625
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 36.9 bits (86), Expect = 0.013
Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 3/70 (4%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGE-FIEETQSDIITADKMYFKALISYPEHG 331
+ + A+ + P N L A F E+ A ++ L P +
Sbjct: 109 AENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQR--QACEILRDWLRYTPAYA 166
Query: 332 QALVNRQRTA 341
+ + A
Sbjct: 167 HLVTPAEEGA 176
Score = 35.0 bits (81), Expect = 0.055
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Query: 269 AIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYP 328
+ + G + A+ LFE A P + + G E + A + L P
Sbjct: 71 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAE-NEQELLAISALRRCLELKP 129
Query: 329 EHGQALVNR 337
++ AL+
Sbjct: 130 DNQTALMAL 138
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 36.9 bits (86), Expect = 0.013
Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 1/80 (1%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQ 332
+ K A+ HA + P + V A + + A L+S P++ Q
Sbjct: 66 AENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN-EHNANAALASLRAWLLSQPQYEQ 124
Query: 333 ALVNRQRTALVVEELDRDFL 352
+ + +++L+
Sbjct: 125 LGSVNLQADVDIDDLNVQSE 144
Score = 32.6 bits (75), Expect = 0.24
Identities = 7/57 (12%), Positives = 19/57 (33%)
Query: 247 HERHTIKSTPGTNIEALGTISAAIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYG 303
+ ++ +I+ L S + + L A + P++ + + G
Sbjct: 123 EQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179
Score = 31.5 bits (72), Expect = 0.68
Identities = 11/76 (14%), Positives = 22/76 (28%), Gaps = 15/76 (19%)
Query: 269 AIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISY- 327
+ M K+ + +A FE AP + + G ++ A+I+
Sbjct: 28 GLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGL--------TQAENEKDGLAIIALN 79
Query: 328 ------PEHGQALVNR 337
P+
Sbjct: 80 HARMLDPKDIAVHAAL 95
Score = 30.7 bits (70), Expect = 1.2
Identities = 9/52 (17%), Positives = 14/52 (26%), Gaps = 3/52 (5%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKAL 324
M + D A K A + GE E + +M +
Sbjct: 251 SNMSQYDLAAKQLVRAIYM---QVGGTTPTGEASREATRSMWDFFRMLLNVM 299
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 36.2 bits (84), Expect = 0.023
Identities = 11/104 (10%), Positives = 32/104 (30%), Gaps = 16/104 (15%)
Query: 261 EALGTISAAIEMK---------------KMGKIDKALKLFEHAFAIAPHNPDVLNAYGEF 305
A+ + +E+ K G+ KA+ + A + N +
Sbjct: 161 AAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKIS-T 219
Query: 306 IEETQSDIITADKMYFKALISYPEHGQALVNRQRTALVVEELDR 349
+ D + + L +H + + ++ + + ++
Sbjct: 220 LYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIES 263
Score = 35.0 bits (81), Expect = 0.059
Identities = 9/77 (11%), Positives = 21/77 (27%), Gaps = 1/77 (1%)
Query: 261 EALGTISAAIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMY 320
E S A+ G A+ + + + ++ E + + A
Sbjct: 142 EMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAE-CFIKEGEPRKAISDL 200
Query: 321 FKALISYPEHGQALVNR 337
A ++ +A
Sbjct: 201 KAASKLKNDNTEAFYKI 217
Score = 32.0 bits (73), Expect = 0.47
Identities = 15/104 (14%), Positives = 28/104 (26%), Gaps = 28/104 (26%)
Query: 261 EALGTISAAIEMK---------------KMGKIDKALKLFEHAFAIAPHNPDVLNAYGEF 305
AL ++ I++K K GK+D+A F+ P + A +
Sbjct: 78 AALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQL 137
Query: 306 IEETQSDIITADKMYFKALISYPEHGQALVNRQRTALVVEELDR 349
I+ + + LD+
Sbjct: 138 IK-------------SDEMQRLRSQALNAFGSGDYTAAIAFLDK 168
Score = 32.0 bits (73), Expect = 0.49
Identities = 19/110 (17%), Positives = 42/110 (38%), Gaps = 18/110 (16%)
Query: 266 ISAAIEMKKMGKIDKALKLFEHAFAIAPHNPDVL--------NAYGEFIEETQSDIITAD 317
I +A E+ + G+ A +E P + + + + + A
Sbjct: 261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSK-----DEKPVEAI 315
Query: 318 KMYFKALISYPEHGQALVNRQRTALVVEELD---RDF--LRKIDEKRDQV 362
++ + L P++ AL +R L+ E D +D+ ++ +E Q+
Sbjct: 316 RVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQI 365
Score = 30.8 bits (70), Expect = 1.0
Identities = 12/92 (13%), Positives = 23/92 (25%), Gaps = 27/92 (29%)
Query: 261 EALGTISAAIEM----KKMGKIDKALKLFEHAFAIAPHNPDVLN----AYGEFIEETQSD 312
+++ + +E+ G++ AL F A P N +
Sbjct: 21 QSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAM------- 73
Query: 313 IITADKMYFKALISY-------PEHGQALVNR 337
AL + A + R
Sbjct: 74 -----GKSKAALPDLTKVIQLKMDFTAARLQR 100
Score = 30.8 bits (70), Expect = 1.0
Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 23/89 (25%)
Query: 269 AIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGE-------------------FIEET 309
A D+A++ +E A ++ + +
Sbjct: 336 AEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAK 395
Query: 310 QSDIITADKMYFK-ALISYPEHGQALVNR 337
+ +II A Y K AL +P++ Q +
Sbjct: 396 KQEIIKA---YRKLALQWHPDNFQNEEEK 421
Score = 30.4 bits (69), Expect = 1.4
Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 1/68 (1%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQ 332
K K +A+++ + P N + L E + A + Y A Q
Sbjct: 306 SKDEKPVEAIRVCSEVLQMEPDNVNALKDRAE-AYLIEEMYDEAIQDYETAQEHNENDQQ 364
Query: 333 ALVNRQRT 340
++
Sbjct: 365 IREGLEKA 372
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 35.5 bits (82), Expect = 0.045
Identities = 12/108 (11%), Positives = 35/108 (32%), Gaps = 4/108 (3%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQ 332
+ + + + L + A + P + + G ++ + + +A P+
Sbjct: 287 QALETVQRLLPVLCQAHGLTPQQVVAIASNG-GGKQALETVQRLLPVLCQAHGLTPQQVV 345
Query: 333 ALVNRQRTALVVEELDR---DFLRKIDEKRDQVSSIPESDPALCKAKK 377
A+ + +E + R + +QV +I + +
Sbjct: 346 AIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALET 393
Score = 35.1 bits (81), Expect = 0.051
Identities = 7/65 (10%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQ 332
+ + + + L + A + P + ++ ++ + + +A PE
Sbjct: 117 QALETVQRLLPVLCQAHGLTPEQVVAIASHD-GGKQALETVQALLPVLCQAHGLTPEQVV 175
Query: 333 ALVNR 337
A+ +
Sbjct: 176 AIASN 180
Score = 34.3 bits (79), Expect = 0.083
Identities = 7/77 (9%), Positives = 26/77 (33%), Gaps = 1/77 (1%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQ 332
+ + + + L + A + P + ++ ++ + + +A P+
Sbjct: 389 QALETVQRLLPVLCQAHGLTPEQVVAIASHD-GGKQALETVQRLLPVLCQAHGLTPQQVV 447
Query: 333 ALVNRQRTALVVEELDR 349
A+ + +E +
Sbjct: 448 AIASNGGGRPALESIVA 464
Score = 30.5 bits (69), Expect = 1.3
Identities = 16/117 (13%), Positives = 37/117 (31%), Gaps = 7/117 (5%)
Query: 268 AAIEMKKMGKIDKALKLFEHAFAIAPH--NPDVLNAYGE--FIEETQSDIITADKMYFKA 323
I + +A+ + +A AP P+ + A ++ + + +A
Sbjct: 39 LKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQA 98
Query: 324 LISYPEHGQALVNRQRTALVVEELDR---DFLRKIDEKRDQVSSIPESDPALCKAKK 377
P+ A+ + +E + R + +QV +I D +
Sbjct: 99 HGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALET 155
>2kat_A Uncharacterized protein; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 33.1 bits (76), Expect = 0.051
Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 2/82 (2%)
Query: 269 AIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYP 328
+ + D AL A P G+ ++ Q D A + + L +
Sbjct: 26 GKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQG-QGDRAGARQAWESGLAAAQ 84
Query: 329 EHGQALVNRQRTALVVEELDRD 350
G V ++ + L R+
Sbjct: 85 SRGDQQVVKELQVF-LRRLARE 105
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 34.6 bits (80), Expect = 0.075
Identities = 13/86 (15%), Positives = 25/86 (29%), Gaps = 17/86 (19%)
Query: 259 NIEALGTISAAIEMKKMGKIDKALKLFEHAFAIAPHNPDVLN----AY---GEFIEETQS 311
++E + ++ G++ AL F A P N + G+
Sbjct: 2 DVEKH--LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKA---- 55
Query: 312 DIITADKMYFKALISYPEHGQALVNR 337
A K + + A + R
Sbjct: 56 ----ALPDLTKVIALKMDFTAARLQR 77
Score = 34.2 bits (79), Expect = 0.083
Identities = 11/104 (10%), Positives = 32/104 (30%), Gaps = 16/104 (15%)
Query: 261 EALGTISAAIEMK---------------KMGKIDKALKLFEHAFAIAPHNPDVLNAYGEF 305
A+ + +E+ K G+ KA+ + A + N +
Sbjct: 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKIS-T 196
Query: 306 IEETQSDIITADKMYFKALISYPEHGQALVNRQRTALVVEELDR 349
+ D + + L +H + + ++ + + ++
Sbjct: 197 LYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIES 240
Score = 33.8 bits (78), Expect = 0.13
Identities = 14/79 (17%), Positives = 22/79 (27%), Gaps = 14/79 (17%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEF--IEETQSDIITAD-----KMYFKALI 325
K GK+D+A F+ P + A + +E Q A Y A+
Sbjct: 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAIT 141
Query: 326 SY-------PEHGQALVNR 337
+ R
Sbjct: 142 FLDKILEVCVWDAELRELR 160
Score = 33.0 bits (76), Expect = 0.19
Identities = 8/77 (10%), Positives = 21/77 (27%), Gaps = 1/77 (1%)
Query: 261 EALGTISAAIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMY 320
E S A++ A+ + + + ++ E + + A
Sbjct: 119 EMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAE-CFIKEGEPRKAISDL 177
Query: 321 FKALISYPEHGQALVNR 337
A ++ +A
Sbjct: 178 KAASKLKSDNTEAFYKI 194
Score = 32.2 bits (74), Expect = 0.34
Identities = 12/83 (14%), Positives = 23/83 (27%), Gaps = 7/83 (8%)
Query: 249 RHTIKSTPGTNIEALGTISAAIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGE--FI 306
+ K N EA IS ++G + +L + + Y + +
Sbjct: 178 KAASKLKS-DNTEAFYKISTL--YYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKL 234
Query: 307 EETQSDIITADKM--YFKALISY 327
+ + Y A Y
Sbjct: 235 NKLIESAEELIRDGRYTDATSKY 257
Score = 31.5 bits (72), Expect = 0.69
Identities = 18/100 (18%), Positives = 28/100 (28%), Gaps = 16/100 (16%)
Query: 261 EALGTISAAIEMK---------------KMGKIDKALKLFEHAFAIAPHNPDVLNAYGEF 305
+AL AA++ MGK AL A+ G
Sbjct: 21 DALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRG-H 79
Query: 306 IEETQSDIITADKMYFKALISYPEHGQALVNRQRTALVVE 345
+ Q + A+ + K L S P + + E
Sbjct: 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE 119
Score = 30.7 bits (70), Expect = 1.1
Identities = 12/77 (15%), Positives = 27/77 (35%), Gaps = 13/77 (16%)
Query: 269 AIEMKKMGKIDKALKLFEHAFAIAPHNPDVL--------NAYGEFIEETQSDIITADKMY 320
A E+ + G+ A +E P + + + + + A ++
Sbjct: 241 AEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSK-----DEKPVEAIRIC 295
Query: 321 FKALISYPEHGQALVNR 337
+ L P++ AL +R
Sbjct: 296 SEVLQMEPDNVNALKDR 312
Score = 29.9 bits (68), Expect = 1.8
Identities = 4/32 (12%), Positives = 12/32 (37%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGE 304
D+A++ +E A ++ + +
Sbjct: 317 LIEEMYDEAIQDYEAAQEHNENDQQIREGLEK 348
Score = 28.8 bits (65), Expect = 4.3
Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 1/67 (1%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQ 332
K K +A+++ + P N + L E + A + Y A Q
Sbjct: 283 SKDEKPVEAIRICSEVLQMEPDNVNALKDRAE-AYLIEEMYDEAIQDYEAAQEHNENDQQ 341
Query: 333 ALVNRQR 339
++
Sbjct: 342 IREGLEK 348
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 34.6 bits (79), Expect = 0.081
Identities = 15/114 (13%), Positives = 36/114 (31%), Gaps = 7/114 (6%)
Query: 252 IKSTPGTNIEALGTISAAIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQS 311
TP + A+ S + + + + L + A + P + + ++
Sbjct: 219 HGLTP-AQVVAIA--SHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIG-GKQALE 274
Query: 312 DIITADKMYFKALISYPEHGQALVNRQRTALVVEELDR---DFLRKIDEKRDQV 362
+ + +A P+ A+ + +E + R + DQV
Sbjct: 275 TVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQV 328
Score = 33.9 bits (77), Expect = 0.15
Identities = 12/108 (11%), Positives = 30/108 (27%), Gaps = 16/108 (14%)
Query: 257 GTNIEALGTISAAIEMK---------------KMGKIDKALKLFEHAFAIAPHNPDVLNA 301
T L + A + + + + L + A + P + +
Sbjct: 613 ETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 672
Query: 302 YGEFIEETQSDIITADKMYFKALISYPEHGQALVNRQRTALVVEELDR 349
G ++ + + +A E A+ + +E + R
Sbjct: 673 NG-GGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQR 719
Score = 33.5 bits (76), Expect = 0.21
Identities = 11/96 (11%), Positives = 30/96 (31%), Gaps = 4/96 (4%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQ 332
+ + + + L + A + + + ++ + + +A P
Sbjct: 576 QALETVQRLLPVLCQAHGLTQVQVVAIASNI-GGKQALETVQRLLPVLCQAHGLTPAQVV 634
Query: 333 ALVNRQRTALVVEELDR---DFLRKIDEKRDQVSSI 365
A+ + +E + R + DQV +I
Sbjct: 635 AIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAI 670
Score = 33.1 bits (75), Expect = 0.28
Identities = 16/149 (10%), Positives = 38/149 (25%), Gaps = 19/149 (12%)
Query: 247 HERHTIKSTPGTNIEALGTISAAIEM---------------KKMGKIDKALKLFEHAFAI 291
K T L + A + + + + + L + A +
Sbjct: 501 ASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGL 560
Query: 292 APHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQALVNRQRTALVVEELDR-- 349
P + + G ++ + + +A A+ + +E + R
Sbjct: 561 TPDQVVAIASNGG-GKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLL 619
Query: 350 -DFLRKIDEKRDQVSSIPESDPALCKAKK 377
+ QV +I D +
Sbjct: 620 PVLCQAHGLTPAQVVAIASHDGGKQALET 648
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural
genomics, PSI-2, protein structure initiative; NMR
{Bacteroides fragilis}
Length = 99
Score = 31.9 bits (73), Expect = 0.089
Identities = 15/61 (24%), Positives = 20/61 (32%), Gaps = 10/61 (16%)
Query: 269 AIEMKKMGKIDKALKLFEHAFAIAPHNPDVL-----NAYGEFIEETQSDIITADKMYFKA 323
E+ G I+ AL+ E P D NAY + D A Y A
Sbjct: 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRK-----LGDWQKALNNYQSA 61
Query: 324 L 324
+
Sbjct: 62 I 62
Score = 27.7 bits (62), Expect = 2.6
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEH 330
+K+G KAL ++ A + P +P + + + ++ Y K + + EH
Sbjct: 46 RKLGDWQKALNNYQSAIELNPDSPAL---------QARKMVMDILNFYNKDMYNQLEH 94
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A
{Encephalitozoon cuniculi} PDB: 2uy1_B
Length = 493
Score = 34.1 bits (77), Expect = 0.11
Identities = 13/142 (9%), Positives = 29/142 (20%), Gaps = 29/142 (20%)
Query: 267 SAAIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFI-------------------- 306
A IE G +F P + + + F+
Sbjct: 325 CAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLEKTS 384
Query: 307 ---------EETQSDIITADKMYFKALISYPEHGQALVNRQRTALVVEELDRDFLRKIDE 357
E + ++ + + + R V E +
Sbjct: 385 RMWDSMIEYEFMVGSMELFRELVDQKMDAIKADAILPPLPPREHNVQMEGILGRYHCFLD 444
Query: 358 KRDQVSSIPESDPALCKAKKES 379
+ + + L E+
Sbjct: 445 SFNFLDLKIRDNSRLLDEFMEN 466
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 33.4 bits (77), Expect = 0.15
Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQ 332
+G A F A AI P P+V N G + A + + L P +
Sbjct: 54 DSLGLRALARNDFSQALAIRPDMPEVFNYLG-IYLTQAGNFDAAYEAFDSVLELDPTYNY 112
Query: 333 ALVNR 337
A +NR
Sbjct: 113 AHLNR 117
Score = 30.7 bits (70), Expect = 0.90
Identities = 7/65 (10%), Positives = 17/65 (26%), Gaps = 2/65 (3%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQ 332
G+ A + P++P + E + D A ++ + +
Sbjct: 122 YYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY--LAEQKLDEKQAKEVLKQHFEKSDKEQW 179
Query: 333 ALVNR 337
Sbjct: 180 GWNIV 184
Score = 28.8 bits (65), Expect = 4.3
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPD 297
+G +D A LF+ A A HN
Sbjct: 226 LSLGDLDSATALFKLAVANNVHNFV 250
Score = 27.7 bits (62), Expect = 9.3
Identities = 6/67 (8%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Query: 271 EMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEH 330
+ + +++ ++A H + G++ D+ +A ++ A+ + +
Sbjct: 190 NISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLS-LGDLDSATALFKLAVANNVHN 248
Query: 331 GQALVNR 337
Sbjct: 249 FVEHRYA 255
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 33.1 bits (75), Expect = 0.16
Identities = 16/73 (21%), Positives = 22/73 (30%), Gaps = 6/73 (8%)
Query: 266 ISAAIEMKKMGKIDKALKLFEHAFAIAPHNP------DVLNAYGEFIEETQSDIITADKM 319
+ A K G A+ E+A I H + GE +E D A
Sbjct: 81 VEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDC 140
Query: 320 YFKALISYPEHGQ 332
Y A Y +
Sbjct: 141 YELAGEWYAQDQS 153
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT
protein-protein interactions, protein binding; 2.00A
{Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A
3asg_A 3ash_A 3as8_A 3asf_A
Length = 186
Score = 32.8 bits (76), Expect = 0.16
Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQ 332
K G+ +A+ L E + + DV G + + ++ ++L P++ +
Sbjct: 19 AKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVK-TGAVDRGTELLERSLADAPDNVK 77
Query: 333 ALVNR 337
Sbjct: 78 VATVL 82
Score = 28.6 bits (65), Expect = 3.1
Identities = 15/72 (20%), Positives = 22/72 (30%), Gaps = 15/72 (20%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPD-------VLNAYGEFIEETQSDIITADKMYFKALI 325
++ K D A+ L P N + L+ G F E A + AL
Sbjct: 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDE--------AIDSFKIALG 138
Query: 326 SYPEHGQALVNR 337
P G+
Sbjct: 139 LRPNEGKVHRAI 150
Score = 27.4 bits (62), Expect = 9.5
Identities = 6/31 (19%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYG 303
++MG+ ++AL F+ A + +
Sbjct: 155 EQMGRHEEALPHFKKANEL---DEGASVELA 182
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 32.2 bits (73), Expect = 0.18
Identities = 10/88 (11%), Positives = 21/88 (23%), Gaps = 8/88 (9%)
Query: 269 AIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYP 328
A + G + A +F+ + ++ G + A Y +
Sbjct: 28 AFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLG-ACRQAMGQYDLAIHSYSYGAVMDI 86
Query: 329 EH-------GQALVNRQRTALVVEELDR 349
+ L+ A L
Sbjct: 87 XEPRFPFHAAECLLQXGELAEAESGLFL 114
>3dd7_A DOC, death on curing protein; all alpha, ribosome inhibitor; HET:
MSE; 1.70A {Enterobacteria phage P1} PDB: 3dd9_A 3k33_A
3kh2_A
Length = 135
Score = 31.2 bits (70), Expect = 0.30
Identities = 17/103 (16%), Positives = 28/103 (27%), Gaps = 16/103 (15%)
Query: 138 ITVADLLEIHKRVLGFADPLASGMFRRTQVFVGGHIPPTPPHIIPLMDEFIAWLNSDVAL 197
I+ +L+ +H + L GM + + D F
Sbjct: 4 ISPEELIALHDANISRYGGL-PGMSDPGRAEAIIGRVQARVAYEEITDLF---------- 52
Query: 198 RMHPVRFAAIAHYKLVHIHPFIDGNGRTSRLLMNLILMQAGFP 240
+A + F D N RT+ L L + G
Sbjct: 53 -----EVSATYLVATARGYIFNDANKRTALNSALLFLRRNGVQ 90
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote
interaction, syphilis, lipoprotein, transport protein;
2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Length = 301
Score = 31.7 bits (71), Expect = 0.44
Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 6/98 (6%)
Query: 261 EALGTISAAIEMKKMGKIDKALKLFEHAFAIAP-HNPDVLNAYGEFIEETQSDIITADKM 319
L AA G ++KA FEH H+PD Y + + ++ D+
Sbjct: 203 NVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEA 262
Query: 320 YFKALISYPE--HGQALVN---RQRTALVVEELDRDFL 352
+AL PE L+ ++R + + FL
Sbjct: 263 LDRALAIDPESVPHNKLLVILSQKRARWLKAHVQDFFL 300
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 31.8 bits (72), Expect = 0.46
Identities = 10/95 (10%), Positives = 25/95 (26%)
Query: 274 KMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQA 333
+ + A F+ + P+N + + + K+Y E
Sbjct: 242 AVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENK 301
Query: 334 LVNRQRTALVVEELDRDFLRKIDEKRDQVSSIPES 368
+ + + +K + Q E+
Sbjct: 302 AKAEASSGDHPTDTEMKEEQKSNTAGSQSQVETEA 336
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A
{Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Length = 91
Score = 29.7 bits (68), Expect = 0.50
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLN----AYGEFIEETQSDIITADKMYFKALISYP 328
K G D+A++ ++ A + P+N + AY + Q D A + Y KAL P
Sbjct: 20 YKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-----QGDYDEAIEYYQKALELDP 74
Query: 329 EHGQALVNR 337
+ +A N
Sbjct: 75 NNAEAKQNL 83
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A
{Thermus thermophilus}
Length = 217
Score = 31.0 bits (71), Expect = 0.62
Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQ 332
+G+ D AL LFE A P +P+ L + + A + + P +
Sbjct: 16 YALGRYDAALTLFERALKENPQDPEALYWLARTQLK-LGLVNPALENGKTLVARTPRYLG 74
Query: 333 ALVNR 337
+
Sbjct: 75 GYMVL 79
Score = 29.4 bits (67), Expect = 1.9
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYG 303
MG++D+AL + A AP + D+ Y
Sbjct: 162 LSMGRLDEALAQYAKALEQAPKDLDLRVRYA 192
Score = 29.0 bits (66), Expect = 2.7
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQ 332
+G+ DKA + A A+ P++ +A E + A Y KAL P+
Sbjct: 129 ALLGERDKAEASLKQALALED-TPEIRSALAELYLS-MGRLDEALAQYAKALEQAPKDLD 186
Query: 333 ALVNR 337
V
Sbjct: 187 LRVRY 191
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 31.2 bits (70), Expect = 0.68
Identities = 9/52 (17%), Positives = 15/52 (28%), Gaps = 3/52 (5%)
Query: 275 MGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALIS 326
G +A + AF + P + Q+ + K L S
Sbjct: 323 KGMNREAADAYLTAFNLRPGANTLYWIENGIF---QTSVPYVVPYLDKFLAS 371
Score = 27.8 bits (61), Expect = 9.5
Identities = 12/125 (9%), Positives = 33/125 (26%), Gaps = 19/125 (15%)
Query: 244 IPKHERHTIKSTPGTNIEALGTISAAIEMKKMG---KIDKALKLFEHAFAIAPHNP---- 296
P+ + T++ L A + G +++A +L +P
Sbjct: 178 WPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARA 237
Query: 297 ---DVLNAYGEFIEETQSDIITADKMYFKAL---------ISYPEHGQALVNRQRTALVV 344
V + + + + I Y + + + +T
Sbjct: 238 EKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESY 297
Query: 345 EELDR 349
+ ++
Sbjct: 298 QAINT 302
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
1.60A {Caenorhabditis elegans}
Length = 126
Score = 29.5 bits (67), Expect = 1.0
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGE 304
M + KA + +E A + P N +
Sbjct: 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRN 123
>2haf_A Putative translation repressor; alpha/beta, X-RAY crystallography,
structural genomics, PSI, protein structure initiative;
2.88A {Vibrio cholerae} SCOP: d.310.1.1 PDB: 2aj2_A
Length = 211
Score = 30.2 bits (68), Expect = 1.3
Identities = 26/117 (22%), Positives = 39/117 (33%), Gaps = 29/117 (24%)
Query: 111 IAEHNE--ILGLDLALKYINNTLVNRVGDITVADLLEIHKRVLGFADPLASGMFRRTQVF 168
I EHN+ +GL ++N DITV +L+ + + A P + + VF
Sbjct: 41 ICEHNQDGAMGL----------MINAPIDITVGGMLK--QVDIEPAYPQSHQENLKKPVF 88
Query: 169 VGG----------HIPPTPPHIIPLMDEFIAWLNS-----DVALRMHPVRFAAIAHY 210
GG H P M + IA S + P + Y
Sbjct: 89 NGGPVSEDRGFILHRPRDHYESSMKMTDDIAVTTSKDILTVLGTEAEPEGYIVALGY 145
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 30.4 bits (68), Expect = 1.4
Identities = 9/73 (12%), Positives = 19/73 (26%)
Query: 274 KMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQA 333
M + + A FE + P N ++ + ++Y + E
Sbjct: 363 LMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKKFAEQDAK 422
Query: 334 LVNRQRTALVVEE 346
+ E
Sbjct: 423 EEANKAMGKKTSE 435
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics,
structural genomics conso SGC, microtubule, motor
protein, phosphoprotein; 2.70A {Homo sapiens} PDB:
3ceq_A
Length = 283
Score = 30.2 bits (69), Expect = 1.5
Identities = 11/69 (15%), Positives = 18/69 (26%), Gaps = 11/69 (15%)
Query: 273 KKMGKIDKALKLFEHAFAIA------PHNPDVLNAYG--EFIEETQSDIITADKMYFKAL 324
K GK A L++ A N D + E EE++ +
Sbjct: 180 LKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGS 239
Query: 325 ---ISYPEH 330
+
Sbjct: 240 WYKACKVDS 248
Score = 27.9 bits (63), Expect = 8.5
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 5/35 (14%)
Query: 273 KKMGKIDKALKLFEHAFAIA-----PHNPDVLNAY 302
+ GK ++ + A I P +P+V
Sbjct: 138 QNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 29.7 bits (67), Expect = 1.6
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 274 KMGKIDKALKLFEHAFAIAPHNPDVLNAY 302
G +++A + A ++ P+N D+ N+Y
Sbjct: 134 YFGFLEEAKENLYKAASLNPNNLDIRNSY 162
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, chaperone; NMR {Homo sapiens}
Length = 133
Score = 29.1 bits (66), Expect = 1.6
Identities = 5/32 (15%), Positives = 13/32 (40%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGE 304
+ M KA+ +++ A + + + Y
Sbjct: 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQR 126
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat,
consensus protein, superhelix, de novo protein; 2.30A
{Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Length = 136
Score = 28.9 bits (66), Expect = 2.0
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 9/69 (13%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLN----AYGEFIEETQSDIITADKMYFKALISYP 328
K G D+A++ ++ A + P + + AY + Q D A + Y KAL P
Sbjct: 12 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-----QGDYDEAIEYYQKALELDP 66
Query: 329 EHGQALVNR 337
+A N
Sbjct: 67 RSAEAWYNL 75
Score = 27.0 bits (61), Expect = 8.9
Identities = 7/30 (23%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAY 302
K G D+A++ ++ A + +P A+
Sbjct: 80 YKQGDYDEAIEYYQKALEL---DPRSAEAW 106
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 28.8 bits (65), Expect = 2.2
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGE 304
K K A+ + + A PDVL +
Sbjct: 90 FKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQ 120
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 29.4 bits (67), Expect = 2.3
Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 1/65 (1%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQ 332
+ G +KA + F A + + + + +++ A Y KAL
Sbjct: 34 SEFGDYEKAAEAFTKAIEENKEDAIPYINFA-NLLSSVNELERALAFYDKALELDSSAAT 92
Query: 333 ALVNR 337
A
Sbjct: 93 AYYGA 97
Score = 29.4 bits (67), Expect = 2.5
Identities = 9/69 (13%), Positives = 16/69 (23%), Gaps = 9/69 (13%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLN----AYGEFIEETQSDIITADKMYFKALISYP 328
+A +FE A N D+ + A +A+
Sbjct: 102 VVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVK-----LEQPKLALPYLQRAVELNE 156
Query: 329 EHGQALVNR 337
+A
Sbjct: 157 NDTEARFQF 165
Score = 29.0 bits (66), Expect = 2.7
Identities = 10/65 (15%), Positives = 21/65 (32%), Gaps = 1/65 (1%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQ 332
K+ + AL + A + ++ + +G + + A + P H
Sbjct: 136 VKLEQPKLALPYLQRAVELNENDTEARFQFG-MCLANEGMLDEALSQFAAVTEQDPGHAD 194
Query: 333 ALVNR 337
A N
Sbjct: 195 AFYNA 199
Score = 28.2 bits (64), Expect = 5.8
Identities = 9/63 (14%), Positives = 19/63 (30%), Gaps = 3/63 (4%)
Query: 278 IDKALKLFEHAFAIAPHNPDVLNAYGE---FIEETQSDIITADKMYFKALISYPEHGQAL 334
+ + H+ + P + + G D A + + KA+ E
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPY 60
Query: 335 VNR 337
+N
Sbjct: 61 INF 63
Score = 27.5 bits (62), Expect = 8.8
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAY 302
+KAL++ + A I PD + A
Sbjct: 204 AYKENREKALEMLDKAIDI---QPDHMLAL 230
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
HET: PGE; 1.85A {Caenorhabditis elegans}
Length = 127
Score = 28.4 bits (64), Expect = 2.5
Identities = 5/33 (15%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 272 MKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGE 304
+K + A++ F + + +P+++ E
Sbjct: 93 FQKQNDLSLAVQWFHRSLSEFR-DPELVKKVKE 124
Score = 27.6 bits (62), Expect = 4.4
Identities = 10/77 (12%), Positives = 26/77 (33%), Gaps = 8/77 (10%)
Query: 258 TNIEALGTISAAIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGE------FIEETQS 311
+NI +A + K + ++ E A + + + Q+
Sbjct: 40 SNITFYNNKAAVY--FEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQN 97
Query: 312 DIITADKMYFKALISYP 328
D+ A + + ++L +
Sbjct: 98 DLSLAVQWFHRSLSEFR 114
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A
{Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Length = 125
Score = 28.1 bits (64), Expect = 2.8
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLN----AYGEFIEETQSDIITADKMYFKALISYP 328
K G D+A++ ++ A + P+N + AY + Q D A + Y KAL P
Sbjct: 20 YKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-----QGDYDEAIEYYQKALELDP 74
Query: 329 EHGQALVNR 337
+ +A N
Sbjct: 75 NNAEAWYNL 83
Score = 28.1 bits (64), Expect = 2.9
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLN----AYGEFIEETQSDIITADKMYFKALISYP 328
K G D+A++ ++ A + P+N + AY + Q D A + Y KAL P
Sbjct: 54 YKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-----QGDYDEAIEYYQKALELDP 108
Query: 329 EHGQALVNR 337
+ +A N
Sbjct: 109 NNAEAKQNL 117
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus
interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 28.3 bits (64), Expect = 2.9
Identities = 5/32 (15%), Positives = 12/32 (37%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGE 304
+ K +A+ ++ A + P N +
Sbjct: 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKI 122
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, HSP70, protein binding, chaperone; 1.60A {Homo
sapiens} SCOP: a.118.8.1
Length = 118
Score = 27.9 bits (63), Expect = 2.9
Identities = 4/30 (13%), Positives = 13/30 (43%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAY 302
+ + + ++A + +E +NP +
Sbjct: 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGL 112
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 29.1 bits (65), Expect = 3.0
Identities = 9/62 (14%), Positives = 23/62 (37%), Gaps = 5/62 (8%)
Query: 268 AAIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIE-----ETQSDIITADKMYFK 322
A+ + + K D+A + ++ + Y + I ++D + A K +
Sbjct: 161 ASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220
Query: 323 AL 324
+
Sbjct: 221 SY 222
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium
(SGC), motor PR transport protein; 2.80A {Homo sapiens}
Length = 311
Score = 29.0 bits (66), Expect = 3.2
Identities = 9/60 (15%), Positives = 16/60 (26%), Gaps = 8/60 (13%)
Query: 273 KKMGKIDKALKLFEHAFAIA------PHNPDVLNAYG--EFIEETQSDIITADKMYFKAL 324
K GK +A L++ A + + + E EE +
Sbjct: 206 LKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265
Score = 28.3 bits (64), Expect = 5.4
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 5/35 (14%)
Query: 273 KKMGKIDKALKLFEHAFAIA-----PHNPDVLNAY 302
K GK +A L + A I +PDV
Sbjct: 122 GKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL 156
Score = 27.5 bits (62), Expect = 9.5
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 5/35 (14%)
Query: 273 KKMGKIDKALKLFEHAFAIA-----PHNPDVLNAY 302
+ GK ++ ++ A I P +P+V
Sbjct: 164 QNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTK 198
Score = 27.5 bits (62), Expect = 9.9
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 5/35 (14%)
Query: 273 KKMGKIDKALKLFEHAFAIA-----PHNPDVLNAY 302
G+ + A+ L + A +PDV
Sbjct: 38 ASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATML 72
>2dba_A Smooth muscle cell associated protein-1, isoform 2;
tetratricopeptide repeat, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 148
Score = 28.5 bits (64), Expect = 3.2
Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 258 TNIEALGTISAAIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAY 302
+++AL S A+E K+G++D+A+ + ++ P N A
Sbjct: 97 GDVKALYRRSQALE--KLGRLDQAVLDLQRCVSLEPKNKVFQEAL 139
>1iyn_A Chloroplastic ascorbate peroxidase; hydrogen peroxide, tobacco
plant, stromal ascorbate peroxidase, oxidoreductase;
HET: HEM; 1.60A {Nicotiana tabacum} SCOP: a.93.1.1
Length = 295
Score = 28.9 bits (65), Expect = 4.0
Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 16/56 (28%)
Query: 185 DEFIAWLNSDVALRMHPV------RFA----------AIAHYKLVHIHPFIDGNGR 224
DE + L +D AL P ++A A AH KL ++
Sbjct: 215 DEDLLVLPTDAALFEDPSFKVYAEKYAADPEAFFKDYAEAHAKLSNLGAKFGPAEG 270
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 28.7 bits (65), Expect = 4.5
Identities = 7/70 (10%), Positives = 14/70 (20%), Gaps = 4/70 (5%)
Query: 269 AIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYG-EFIEETQSDIITADKMYFKALISY 327
+ ++G L + L + I + K
Sbjct: 79 SKSFARIGNAYHKLGDLKKTIEY---YQKSLTEHRTADILTKLRNAEKELKKAEAEAYVN 135
Query: 328 PEHGQALVNR 337
PE +
Sbjct: 136 PEKAEEARLE 145
Score = 28.3 bits (64), Expect = 5.1
Identities = 19/103 (18%), Positives = 30/103 (29%), Gaps = 31/103 (30%)
Query: 257 GTNIEALGTISAAIEM--------------KKMGKIDKALKLFEHAFAIAPHNPDVLNAY 302
G LG + IE K+ +K LK E + P +
Sbjct: 86 GNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLE 145
Query: 303 G-EFIEETQSDIITADKMYFKALISY-------PEHGQALVNR 337
G E+ + + A+ +Y PE + NR
Sbjct: 146 GKEYFTK---------SDWPNAVKAYTEMIKRAPEDARGYSNR 179
Score = 28.3 bits (64), Expect = 6.1
Identities = 13/76 (17%), Positives = 21/76 (27%), Gaps = 15/76 (19%)
Query: 269 AIEMKKMGKIDKALKLFEHAFAIAPHNPDVLN----AY---GEFIEETQSDIITADKMYF 321
E A+K + AP + + A F E A
Sbjct: 146 GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPE--------AIADCN 197
Query: 322 KALISYPEHGQALVNR 337
KA+ P +A + +
Sbjct: 198 KAIEKDPNFVRAYIRK 213
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP:
a.118.8.1 PDB: 2bug_A
Length = 166
Score = 28.1 bits (63), Expect = 4.8
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGE 304
+GK AL+ +E + PH+ D Y E
Sbjct: 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQE 123
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 28.8 bits (65), Expect = 5.0
Identities = 9/55 (16%), Positives = 16/55 (29%), Gaps = 3/55 (5%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHN-PDVLNAYGE--FIEETQSDIITADKMYFKAL 324
K G + FE A + + + Y + D A + + L
Sbjct: 16 CKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL 70
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 27.7 bits (62), Expect = 5.3
Identities = 6/50 (12%), Positives = 19/50 (38%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFK 322
K+D+A + + P V+ + + E +++ ++ +
Sbjct: 108 IAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADSRVTYS 157
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 28.4 bits (64), Expect = 5.5
Identities = 7/54 (12%), Positives = 14/54 (25%), Gaps = 3/54 (5%)
Query: 274 KMGKIDKALKLFEHAFAIAPHN-PDVLNAYGE--FIEETQSDIITADKMYFKAL 324
G + F+ A + + Y + D A + + L
Sbjct: 60 NAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDL 113
Score = 28.0 bits (63), Expect = 7.0
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 273 KKMGKIDKALKLFEHAFAIA 292
+G ++ALK E +A
Sbjct: 354 SAIGGHERALKYAEQHLQLA 373
Score = 27.7 bits (62), Expect = 10.0
Identities = 8/57 (14%), Positives = 17/57 (29%), Gaps = 5/57 (8%)
Query: 273 KKMGKIDKALKLFEHAFAIA---PHNPDVLNAYGE--FIEETQSDIITADKMYFKAL 324
+G +KA++ +H +A + G + A + L
Sbjct: 97 FYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHL 153
>2gzo_A UPF0301 protein SO3346; GFT-protein structure, nesgc, alpha-beta,
structural genomics, PSI, protein structure initiative;
NMR {Shewanella oneidensis} SCOP: d.310.1.1
Length = 195
Score = 27.9 bits (62), Expect = 6.2
Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 30/117 (25%)
Query: 111 IAEHNE--ILGLDLALKYINNTLVNRVGDITVADLLEIHKRVLGFADPLASGMFRRTQVF 168
+ EH+E +GL ++N+ I V LLE ++ + +++ + +QV
Sbjct: 27 LCEHDEKGAMGL----------VINKPLGIEVNSLLE---QMDLPTEQVSADLAMGSQVL 73
Query: 169 VGG----------HIPPTPPHIIPLMDEFIAWLNS-----DVALRMHPVRFAAIAHY 210
+GG H + + S + + P +F Y
Sbjct: 74 MGGPVSQDRGFVLHTSQPYWANSTELGSGLMLTTSRDVLTAIGSKRSPDKFLVALGY 130
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Methanococcus maripaludis}
Length = 112
Score = 27.0 bits (61), Expect = 6.3
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLN 300
G +++ LFE A + P
Sbjct: 17 YDAGNYTESIDLFEKAIQLDPEESKYWL 44
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 28.1 bits (62), Expect = 6.7
Identities = 10/49 (20%), Positives = 20/49 (40%)
Query: 274 KMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFK 322
++G++D A F A AP + + E+ ++ +MY
Sbjct: 276 ELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKG 324
>3e2o_A CCP, cytochrome C peroxidase; cytochrome C peroxidase (CCP), heme,
hydrogen peroxide, iron, metal-binding, mitochondrion;
HET: HEM; 1.06A {Saccharomyces cerevisiae} PDB: 1z53_A*
1kok_A* 1sbm_A* 1sdq_A* 1s73_A* 1zby_A* 1zbz_A* 2b0z_A*
2b10_A* 2b11_A* 2b12_A* 2cyp_A* 2ycg_A* 2v23_A* 1ebe_A*
3r98_A* 3r99_A* 1mkr_A* 1mk8_A* 1mkq_A* ...
Length = 294
Score = 28.2 bits (63), Expect = 6.9
Identities = 7/41 (17%), Positives = 13/41 (31%), Gaps = 16/41 (39%)
Query: 190 WLNSDVALRMHPV------RFA----------AIAHYKLVH 214
L +B +L P +A + A KL+
Sbjct: 231 MLPTBYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKLLE 271
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 28.2 bits (63), Expect = 7.3
Identities = 6/56 (10%), Positives = 13/56 (23%)
Query: 269 AIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKAL 324
+ + K G+ KA + E + ++ L
Sbjct: 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLL 323
Score = 27.9 bits (62), Expect = 8.3
Identities = 9/64 (14%), Positives = 17/64 (26%), Gaps = 6/64 (9%)
Query: 273 KKMGKIDKALKLFEHAFAIA-----PHNPDVLNAYGEFIEETQSDIITADKMYFKALISY 327
+ G A++ F+ A ++ P VL A + + L
Sbjct: 233 DRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW-TLCKAGQTQKAFQFIEEGLDHI 291
Query: 328 PEHG 331
Sbjct: 292 TARS 295
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.396
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,980,751
Number of extensions: 514628
Number of successful extensions: 1233
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1165
Number of HSP's successfully gapped: 233
Length of query: 505
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 407
Effective length of database: 3,965,535
Effective search space: 1613972745
Effective search space used: 1613972745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.4 bits)