RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1740
(505 letters)
>d2f6sa1 a.265.1.1 (A:1-177) Cell filamentation protein Fic
{Helicobacter pylori [TaxId: 210]}
Length = 177
Score = 112 bits (280), Expect = 1e-29
Identities = 25/137 (18%), Positives = 56/137 (40%), Gaps = 8/137 (5%)
Query: 114 HNEILGLDLALKYINNTLVNRVGDITVADLLEIHKRVLGFADPLASGMFRRTQVFVGGHI 173
H + L+ A I + L++ + T+ L EIH+ + A G R + G
Sbjct: 2 HLDRQSLEKAKHLIQSGLIDTIEVGTIKGLQEIHRFLFEGLYEFA-GKIRDKNIAKGNFR 60
Query: 174 PPTPPHIIPLMDEFIAWLNSDVALRMHPVRFAAIAHYKLVHIHPFIDGNGRTSRLLMNLI 233
++ ++ + + + ++ HPF++GNGR +R+ ++L+
Sbjct: 61 FANCLYLDLILPRIESMPQ-------NNFNQIVEKYVEMNIAHPFLEGNGRATRIWLDLL 113
Query: 234 LMQAGFPPVIIPKHERH 250
L + V+ + ++
Sbjct: 114 LKKELKKIVLWDRIDKA 130
>d2g03a1 a.265.1.1 (A:11-187) Hypothetical protein NMA0004
{Neisseria meningitidis [TaxId: 487]}
Length = 177
Score = 100 bits (249), Expect = 3e-25
Identities = 25/135 (18%), Positives = 52/135 (38%), Gaps = 8/135 (5%)
Query: 116 EILGLDLALKYINNTLVNRVGDITVADLLEIHKRVLGFADPLASGMFRRTQVFVGGHIPP 175
+ L A + + ++R+ T A L +IH+ + G A G R + GG
Sbjct: 5 DEQSLHNARRLFESGDIDRIEVGTTAGLQQIHRYLFGGLYDFA-GQIREDNISKGGFRFA 63
Query: 176 TPPHIIPLMDEFIAWLNSDVALRMHPVRFAAIAHYKLVHIHPFIDGNGRTSRLLMNLILM 235
++ + + + ++ HPF++GNGR++R+ ++L+L
Sbjct: 64 NAMYLKEALVKIEQMPERTFEE-------IIAKYVEMNIAHPFLEGNGRSTRIWLDLVLK 116
Query: 236 QAGFPPVIIPKHERH 250
+ V +
Sbjct: 117 KNLKKVVNWQNVSKT 131
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT
{Human (Homo sapiens) [TaxId: 9606]}
Length = 388
Score = 45.0 bits (105), Expect = 1e-05
Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 1/74 (1%)
Query: 264 GTISAAIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKA 323
G + A + G + A + + P N VL I + + A
Sbjct: 1 GPMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSS-IHFQCRRLDRSAHFSTLA 59
Query: 324 LISYPEHGQALVNR 337
+ P +A N
Sbjct: 60 IKQNPLLAEAYSNL 73
Score = 44.3 bits (103), Expect = 2e-05
Identities = 22/133 (16%), Positives = 47/133 (35%), Gaps = 10/133 (7%)
Query: 206 AIAHY-KLVHIHPFIDGNGRTSRLLMNLILMQAGFPPVIIPKHERHTIKSTPGTNIEALG 264
AI Y + + + P + + + L + G + + E + A
Sbjct: 256 AIDTYRRAIELQP----HFPDAYCNLANALKEKGS----VAEAEDCYNTALRLCPTHADS 307
Query: 265 TISAAIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKAL 324
+ A ++ G I++A++L+ A + P + + + Q + A Y +A+
Sbjct: 308 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS-VLQQQGKLQEALMHYKEAI 366
Query: 325 ISYPEHGQALVNR 337
P A N
Sbjct: 367 RISPTFADAYSNM 379
Score = 39.3 bits (90), Expect = 0.001
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 269 AIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYP 328
A + G ID A+ + A + PH PD ++E + + A+ Y AL P
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE-KGSVAEAEDCYNTALRLCP 302
Query: 329 EH 330
H
Sbjct: 303 TH 304
Score = 35.0 bits (79), Expect = 0.020
Identities = 26/141 (18%), Positives = 44/141 (31%), Gaps = 22/141 (15%)
Query: 185 DEFIAWLNSDVALRMHPVRFAAIAHYKLVHIHPFIDGNGRTSRLLMNLILMQAGFPPVII 244
D I A+ + P A+ L + G + P
Sbjct: 254 DLAIDTYRR--AIELQP--HFPDAYCNLANAL---KEKGSVAEAEDCYNTALRLCPTHAD 306
Query: 245 PKHERHTIKSTPGTNIEALGTISAAIEMK---------------KMGKIDKALKLFEHAF 289
+ IK G EA+ A+E+ + GK+ +AL ++ A
Sbjct: 307 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366
Query: 290 AIAPHNPDVLNAYGEFIEETQ 310
I+P D + G ++E Q
Sbjct: 367 RISPTFADAYSNMGNTLKEMQ 387
Score = 33.9 bits (76), Expect = 0.040
Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 8/149 (5%)
Query: 189 AWLNSDVALRMHPVRFAAIAHYKLVHIHPFIDGNGRTSRLLMNLILMQAGFPPVIIPKHE 248
A++N L+ + A+A Y + N + + + G + I +
Sbjct: 205 AYINLGNVLKEARIFDRAVAAYL---RALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYR 261
Query: 249 RHTIKSTPGTNIEALGTISAAIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEE 308
R I+ P +A + A +K+ G + +A + A + P + D LN I+
Sbjct: 262 R-AIELQPH-FPDAYCNL--ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN-IKR 316
Query: 309 TQSDIITADKMYFKALISYPEHGQALVNR 337
Q +I A ++Y KAL +PE A N
Sbjct: 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNL 345
Score = 33.5 bits (75), Expect = 0.054
Identities = 7/47 (14%), Positives = 16/47 (34%), Gaps = 2/47 (4%)
Query: 258 TNIEALGTISAAIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGE 304
N L +S+ + ++D++ A P + + G
Sbjct: 31 DNTGVLLLLSSI--HFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGN 75
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase
alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}
Length = 315
Score = 39.9 bits (92), Expect = 5e-04
Identities = 12/77 (15%), Positives = 28/77 (36%), Gaps = 2/77 (2%)
Query: 261 EALGTISAAIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMY 320
+ A +++ + ++A KL A + N V + ++ Q D+
Sbjct: 44 DVYDYFRAV--LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYI 101
Query: 321 FKALISYPEHGQALVNR 337
+ P++ Q +R
Sbjct: 102 TAIIEEQPKNYQVWHHR 118
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing
protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 201
Score = 38.4 bits (88), Expect = 9e-04
Identities = 28/181 (15%), Positives = 61/181 (33%), Gaps = 16/181 (8%)
Query: 206 AIAHYKLVHIHPFIDGNGRTSRLLMNLILMQAGFPPVIIPKHERHTIKSTPGTNIEALGT 265
A A Y I N + N L + G +++A
Sbjct: 23 AAACYGRA-----ITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 77
Query: 266 ISAAIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALI 325
+ +M D+A+ + A+++A F ++ S + A K + ++
Sbjct: 78 LGQC--QLEMESYDEAIANLQRAYSLAKEQRL------NFGDDIPSALRIAKKKRWNSIE 129
Query: 326 SYPEHGQALVNRQRTALVVEELDRDF--LRKIDEKRDQVSSIPESDPALCKAKKESYFQH 383
H ++ ++ T L+ E +R+ ++ E + I + +AK + Y
Sbjct: 130 ERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACI-EAKHDKYMAD 188
Query: 384 I 384
+
Sbjct: 189 M 189
Score = 31.9 bits (71), Expect = 0.11
Identities = 26/180 (14%), Positives = 52/180 (28%), Gaps = 6/180 (3%)
Query: 274 KMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQA 333
K +A + A P A +AL + +A
Sbjct: 16 VGRKYPEAAACYGRAITRNPLVAVYYTNR-ALCYLKMQQPEQALADCRRALELDGQSVKA 74
Query: 334 LVNRQRTALVVEELD---RDFLRKIDEKRDQVSSIPESDPALCKAKKESYFQHIYHTVGI 390
+ L +E D + R ++Q + + P+ + K+ + I
Sbjct: 75 HFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIH 134
Query: 391 EGNSMSLAQTRSIV-ETRMAIG-GKSIAEHNEILGLDLALKYINNTLVNSYYQVLEEANR 448
+ + + TR I E + + E +E G A + + Y ++E
Sbjct: 135 QESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFS 194
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio
parahaemolyticus [TaxId: 670]}
Length = 264
Score = 38.5 bits (89), Expect = 0.001
Identities = 12/66 (18%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 274 KMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQA 333
G++ +AL+L A +P + + +++ E + D AD+ +++ +PE+
Sbjct: 8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCI-DGDFERADEQLMQSIKLFPEYLPG 66
Query: 334 LVNRQR 339
+
Sbjct: 67 ASQLRH 72
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1
(PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 36.3 bits (82), Expect = 0.006
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 269 AIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYP 328
+ + G + A+ LFE A P + + G + + A + L P
Sbjct: 26 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGT-TQAENEQELLAISALRRCLELKP 84
Query: 329 EH 330
++
Sbjct: 85 DN 86
Score = 30.9 bits (68), Expect = 0.35
Identities = 8/44 (18%), Positives = 15/44 (34%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITA 316
+G +A++ F A + + G E S + A
Sbjct: 251 INLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLA 294
Score = 26.3 bits (56), Expect = 9.1
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Query: 285 FEHAFAIAPHNP--DVLNAYGEFIEETQS-DIITADKMYFKALISYPEHGQALVNR 337
++ + NP D + E + Q D+ A ++ A+ P+H +A
Sbjct: 4 YDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYL 59
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey
(Saimiri boliviensis) [TaxId: 27679]}
Length = 168
Score = 34.9 bits (79), Expect = 0.010
Identities = 7/55 (12%), Positives = 16/55 (29%), Gaps = 1/55 (1%)
Query: 272 MKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALIS 326
M + + A FE + P N ++ + D+ + +
Sbjct: 108 QLLMNEFESAKGDFEKVLEVNPQNKAARLQIFM-CQKKAKEHNERDRRTYANMFK 161
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl
isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}
Length = 153
Score = 33.8 bits (76), Expect = 0.021
Identities = 8/37 (21%), Positives = 19/37 (51%)
Query: 272 MKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEE 308
G +++A + A ++ P+N D+ N+Y + +
Sbjct: 111 NMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 147
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Length = 128
Score = 32.1 bits (72), Expect = 0.052
Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Query: 274 KMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQA 333
K D ALK ++ A + P N + E D ++ KA+ E+ +
Sbjct: 16 KKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKG-DYNKCRELCEKAIEVGRENRED 74
Query: 334 LVNRQRT 340
+
Sbjct: 75 YRQIAKA 81
Score = 30.2 bits (67), Expect = 0.26
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGE 304
K K A+ + + A PDVL +
Sbjct: 90 FKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQ 120
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 159
Score = 32.3 bits (72), Expect = 0.063
Identities = 13/74 (17%), Positives = 29/74 (39%), Gaps = 6/74 (8%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALISYPEHGQ 332
+GK AL+ +E + PH+ D Y E + + K + +A+
Sbjct: 89 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK------QKAFERAIAGDEHKRS 142
Query: 333 ALVNRQRTALVVEE 346
+ + ++ +E+
Sbjct: 143 VVDSLDIESMTIED 156
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 31.6 bits (70), Expect = 0.071
Identities = 4/32 (12%), Positives = 13/32 (40%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHNPDVLNAYGE 304
+ + + ++A + +E +NP +
Sbjct: 82 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 113
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 31.6 bits (70), Expect = 0.11
Identities = 5/55 (9%), Positives = 16/55 (29%), Gaps = 1/55 (1%)
Query: 272 MKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYFKALIS 326
+ + A F+ + P+N ++ + +K + +
Sbjct: 106 HLAVNDFELARADFQKVLQLYPNNKAAKTQLAV-CQQRIRRQLAREKKLYANMFE 159
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus)
[TaxId: 9913]}
Length = 169
Score = 30.8 bits (68), Expect = 0.23
Identities = 8/50 (16%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 272 MKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSDIITADKMYF 321
+ + + D+AL + A IAP + + + +++ +K +
Sbjct: 121 WQGLKEYDQALADLKKAQEIAPEDKAIQAELLK-VKQKIKAQKDKEKAAY 169
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa
subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 308
Score = 31.1 bits (69), Expect = 0.28
Identities = 20/128 (15%), Positives = 39/128 (30%), Gaps = 7/128 (5%)
Query: 266 ISAAIEMKKMGKIDKALKLFEHAFAIA-PHNPDVLNAYGEFIEETQSDIITADKMYFKAL 324
D+A ++E A + N + AY ++ EE++ +Y + L
Sbjct: 68 AEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADY-EESRMKYEKVHSIYNRLL 126
Query: 325 -ISYPEHGQALVNRQRTALVVEELDRDFLRKIDEKRDQVSSIPESDPALCKAKKESYFQH 383
I + + + A E + R I +K A Y+
Sbjct: 127 AIEDIDPTLVYIQYMKFARRAEGIKS--GRMIFKK--AREDARTRHHVYVTAALMEYYCS 182
Query: 384 IYHTVGIE 391
+V +
Sbjct: 183 KDKSVAFK 190
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId:
562]}
Length = 259
Score = 30.2 bits (66), Expect = 0.55
Identities = 28/186 (15%), Positives = 61/186 (32%), Gaps = 9/186 (4%)
Query: 269 AIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFI------EETQSDIITADKMYFK 322
+ +G A F A AI P P+V N G ++ + + ++
Sbjct: 44 GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 103
Query: 323 ALISYPEHGQALVNRQRTALVVEELDRDFLRKIDEKRDQVSSIPESDPALCKAKKESYFQ 382
++ G AL R L ++L F + + + ++ L + + + +
Sbjct: 104 YNYAHLNRGIALYYGGRDKLAQDDLLA-FYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLK 162
Query: 383 HIYHTVGIEGNSMSLAQTRSIVETRMAIGGKSIAEHNEILGLDLALKYINNTLVNSYYQV 442
+ E ++ + + + + A+ + L L N L Y +
Sbjct: 163 QHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSL 222
Query: 443 --LEEA 446
L+ A
Sbjct: 223 GDLDSA 228
Score = 29.0 bits (63), Expect = 1.1
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 273 KKMGKIDKALKLFEHAFAIAPHN 295
+G +D A LF+ A A HN
Sbjct: 220 LSLGDLDSATALFKLAVANNVHN 242
>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit
tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 145
Score = 28.3 bits (61), Expect = 1.2
Identities = 5/32 (15%), Positives = 14/32 (43%)
Query: 271 EMKKMGKIDKALKLFEHAFAIAPHNPDVLNAY 302
E ++ ++ + E+ + P + D L +
Sbjct: 6 EFDRILLFEQIRQDAENTYKSNPLDADNLTRW 37
>d1u0ma2 c.95.1.2 (A:202-349) Putative polyketide synthase SCO1206
{Streptomyces coelicolor [TaxId: 1902]}
Length = 148
Score = 28.4 bits (63), Expect = 1.3
Identities = 8/62 (12%), Positives = 19/62 (30%), Gaps = 1/62 (1%)
Query: 178 PHIIPLMDEFIAWLNSDVALRMHPVRFAAIAHYKLV-HIHPFIDGNGRTSRLLMNLILMQ 236
++IP +++I + + L + +G + L I+
Sbjct: 11 SYLIPKTEDWIMYDVKATGFHFLLDKRVPATMEPLAPALKELAGEHGWDASDLDFYIVHA 70
Query: 237 AG 238
G
Sbjct: 71 GG 72
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 122
Score = 27.8 bits (61), Expect = 1.3
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 269 AIEMKKMGKIDKALKLFEHAFAIAPHNPDVLN 300
A+ ++ + +KALK P N
Sbjct: 79 AVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 110
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 290
Score = 27.2 bits (59), Expect = 4.9
Identities = 9/52 (17%), Positives = 22/52 (42%)
Query: 261 EALGTISAAIEMKKMGKIDKALKLFEHAFAIAPHNPDVLNAYGEFIEETQSD 312
L ++ A+ ++ + K F++ + +LN E I++ + D
Sbjct: 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESIQQQEDD 290
>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 212
Score = 26.6 bits (58), Expect = 6.2
Identities = 7/39 (17%), Positives = 18/39 (46%)
Query: 430 YINNTLVNSYYQVLEEANRGDIRPFVRFIAPVTIKFSRR 468
++N+ ++ ++ + D V FI+P +F +
Sbjct: 26 WLNDHIIGFAFEYFANSQFHDSSDHVSFISPEVTQFIKC 64
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 124
Score = 25.9 bits (57), Expect = 7.0
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 274 KMGKIDKALKLFEHAFAIAPHNPDVLN 300
K+G+ A + + F +N V
Sbjct: 85 KLGEYSMAKRYVDTLFEHERNNKQVGA 111
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.396
Gapped
Lambda K H
0.267 0.0597 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,904,088
Number of extensions: 92940
Number of successful extensions: 222
Number of sequences better than 10.0: 1
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 38
Length of query: 505
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 416
Effective length of database: 1,185,626
Effective search space: 493220416
Effective search space used: 493220416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.3 bits)