Query psy17404
Match_columns 305
No_of_seqs 291 out of 2063
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 21:38:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17404.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17404hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03865 M14_CPE_H Peptidase M1 100.0 1.5E-76 3.2E-81 555.2 30.4 305 1-305 11-382 (402)
2 cd03863 M14_CPD_II The second 100.0 4.7E-76 1E-80 550.9 29.8 300 1-305 12-354 (375)
3 cd03869 M14_CPX_like Peptidase 100.0 4.1E-75 8.9E-80 545.2 30.8 299 1-305 11-385 (405)
4 cd03864 M14_CPN Peptidase M14 100.0 5.1E-74 1.1E-78 539.5 31.1 301 1-305 7-372 (392)
5 cd06245 M14_CPD_III The third 100.0 4.6E-72 9.9E-77 522.9 30.1 299 1-305 8-342 (363)
6 KOG2649|consensus 100.0 2.6E-71 5.7E-76 514.0 27.8 304 1-305 75-434 (500)
7 cd03866 M14_CPM Peptidase M14 100.0 1E-70 2.2E-75 516.4 31.4 297 1-305 11-353 (376)
8 cd03868 M14_CPD_I The first ca 100.0 6.3E-70 1.4E-74 512.9 30.0 298 1-305 7-352 (372)
9 cd03867 M14_CPZ Peptidase M14- 100.0 1.5E-68 3.2E-73 505.6 31.3 297 1-305 7-374 (395)
10 cd03858 M14_CP_N-E_like Carbox 100.0 2.6E-66 5.6E-71 489.6 30.3 300 1-305 7-354 (374)
11 KOG2650|consensus 100.0 2.3E-55 5E-60 411.3 15.6 242 1-246 127-417 (418)
12 cd06247 M14_CPO Peptidase M14 100.0 1.6E-53 3.4E-58 388.0 17.3 242 1-246 10-297 (298)
13 cd03872 M14_CPA6 Carboxypeptid 100.0 2.1E-53 4.6E-58 387.2 18.0 244 1-248 8-297 (300)
14 cd03870 M14_CPA Peptidase M14 100.0 5.4E-53 1.2E-57 385.7 20.6 243 1-248 12-299 (301)
15 cd03871 M14_CPB Peptidase M14 100.0 2.5E-53 5.3E-58 387.4 18.2 242 1-247 12-299 (300)
16 cd06246 M14_CPB2 Peptidase M14 100.0 7.8E-53 1.7E-57 384.8 17.2 243 1-247 11-299 (300)
17 cd06248 M14_CPA_CPB_like Pepti 100.0 9.3E-50 2E-54 365.8 21.5 244 1-246 10-303 (304)
18 cd03859 M14_CPT Peptidase M14- 100.0 8.9E-49 1.9E-53 358.7 15.4 237 1-240 10-295 (295)
19 cd03860 M14_CP_A-B_like The Pe 100.0 2.4E-46 5.2E-51 342.8 20.1 240 1-246 7-293 (294)
20 cd06226 M14_CPT_like Peptidase 100.0 1.7E-46 3.7E-51 341.1 17.2 231 12-243 1-292 (293)
21 cd06228 Peptidase_M14-like_3 A 100.0 2.4E-44 5.2E-49 329.7 15.2 216 20-241 5-332 (332)
22 PF00246 Peptidase_M14: Zinc c 100.0 1.1E-42 2.3E-47 316.8 18.3 233 1-239 1-279 (279)
23 cd06905 Peptidase_M14-like_8 A 100.0 3.7E-43 8.1E-48 326.8 14.8 230 1-230 10-352 (360)
24 smart00631 Zn_pept Zn_pept. 100.0 1.2E-42 2.6E-47 316.0 17.2 226 1-232 7-276 (277)
25 cd06227 Peptidase_M14-like_2 A 100.0 3.6E-41 7.8E-46 303.5 16.7 210 1-220 9-258 (272)
26 cd06229 M14_Endopeptidase_I Pe 100.0 1.1E-39 2.5E-44 292.8 14.5 206 24-239 1-254 (255)
27 cd06237 M14_Nna1_like_3 A bact 100.0 9.2E-34 2E-38 251.8 15.6 185 1-221 13-226 (244)
28 cd03856 M14_Nna1_like Peptidas 100.0 2.9E-30 6.3E-35 232.7 15.1 180 13-223 25-243 (269)
29 cd06908 M14_AGBL4_like Peptida 100.0 1.1E-29 2.4E-34 226.9 13.6 135 5-163 1-136 (261)
30 cd06234 M14_Nna1_like_1 A bact 100.0 5.2E-29 1.1E-33 223.0 15.8 192 2-223 17-240 (263)
31 cd03862 Peptidase_M14-like_7 A 100.0 1.4E-28 3E-33 221.5 15.6 176 26-221 8-241 (273)
32 PRK10602 murein peptide amidas 100.0 1.2E-28 2.6E-33 217.2 8.9 189 15-239 14-230 (237)
33 cd06242 Peptidase_M14-like_1_5 99.9 2E-27 4.4E-32 214.1 13.9 134 1-163 8-142 (268)
34 cd06235 M14_Nna1_like_2 Subgro 99.9 5.3E-26 1.1E-30 204.1 14.9 188 12-223 9-230 (258)
35 cd06238 Peptidase_M14-like_1_1 99.9 4.9E-26 1.1E-30 204.9 13.2 182 21-220 1-254 (271)
36 cd06239 Peptidase_M14-like_1_2 99.9 1E-25 2.2E-30 198.2 13.2 122 8-163 2-123 (231)
37 cd06241 Peptidase_M14-like_1_4 99.9 6E-25 1.3E-29 197.9 13.4 141 3-163 1-150 (266)
38 cd00596 Peptidase_M14_like The 99.9 3.7E-25 7.9E-30 191.3 9.0 170 49-239 1-195 (196)
39 cd06243 Peptidase_M14-like_1_6 99.9 4.4E-24 9.4E-29 188.6 11.1 116 21-163 1-119 (236)
40 cd06907 M14_AGBL2-3_like Pepti 99.9 2.6E-23 5.5E-28 184.9 12.2 128 12-163 10-139 (261)
41 cd06244 Peptidase_M14-like_1_7 99.9 3.5E-23 7.6E-28 184.3 12.1 118 21-163 1-158 (268)
42 cd06236 M14_AGBL5_like Peptida 99.9 4.8E-23 1E-27 186.9 12.4 126 15-163 15-161 (304)
43 cd06240 Peptidase_M14-like_1_3 99.9 3.3E-22 7.2E-27 179.6 11.7 130 17-163 1-167 (273)
44 cd03857 Peptidase_M14-like_1 P 99.9 3.2E-22 6.9E-27 176.6 11.1 115 21-163 1-120 (226)
45 cd06904 M14_MpaA_like Peptidas 99.9 5.3E-22 1.2E-26 169.0 8.1 150 49-222 1-164 (178)
46 cd06906 M14_Nna1 Peptidase M14 99.8 3.8E-20 8.3E-25 165.3 8.5 116 4-135 3-125 (278)
47 cd06232 Peptidase_M14-like_5 P 99.8 3.5E-19 7.6E-24 154.1 8.1 90 21-131 20-112 (240)
48 cd06231 Peptidase_M14-like_4 A 99.8 3.9E-18 8.4E-23 151.0 12.5 115 12-163 11-126 (236)
49 COG2866 Predicted carboxypepti 99.3 8.5E-12 1.8E-16 117.5 7.1 102 15-137 120-223 (374)
50 PF13715 DUF4480: Domain of un 99.2 2.9E-11 6.2E-16 90.8 6.2 55 251-305 2-57 (88)
51 cd06251 M14_ASTE_ASPA_like_1 A 99.2 6.9E-10 1.5E-14 101.5 14.2 211 30-293 9-238 (287)
52 cd06233 Peptidase_M14-like_6 P 99.1 2.3E-10 5.1E-15 103.4 9.6 83 29-138 39-122 (283)
53 PF13620 CarboxypepD_reg: Carb 99.1 1.5E-10 3.2E-15 85.6 5.5 55 251-305 2-61 (82)
54 cd06253 M14_ASTE_ASPA_like_3 A 99.1 2.4E-09 5.2E-14 98.4 14.3 217 29-293 9-248 (298)
55 cd06254 M14_ASTE_ASPA_like_4 A 99.0 7.2E-09 1.6E-13 94.9 15.2 83 29-138 5-87 (288)
56 cd06252 M14_ASTE_ASPA_like_2 A 99.0 5.1E-09 1.1E-13 97.1 13.6 82 28-138 22-103 (316)
57 cd06250 M14_PaAOTO_like An unc 99.0 9.5E-10 2.1E-14 103.5 8.5 101 20-138 4-106 (359)
58 KOG3641|consensus 99.0 2.9E-10 6.2E-15 108.6 4.6 117 2-137 386-504 (650)
59 TIGR02994 ectoine_eutE ectoine 99.0 1.3E-08 2.8E-13 94.5 14.1 213 29-293 36-274 (325)
60 cd06255 M14_ASTE_ASPA_like_5 A 98.8 2.1E-08 4.6E-13 92.0 7.7 87 22-137 3-92 (293)
61 cd06230 M14_ASTE_ASPA_like The 98.7 2.5E-08 5.4E-13 89.6 4.9 82 49-163 1-82 (252)
62 PF04952 AstE_AspA: Succinylgl 98.5 1.3E-07 2.8E-12 86.6 5.4 69 46-137 2-70 (292)
63 PF08400 phage_tail_N: Prophag 98.4 2.1E-06 4.6E-11 68.8 8.0 54 251-304 5-68 (134)
64 PRK02259 aspartoacylase; Provi 98.0 8.3E-06 1.8E-10 74.7 6.2 88 46-163 2-89 (288)
65 PRK05324 succinylglutamate des 98.0 1.2E-05 2.6E-10 75.0 6.9 70 45-139 46-115 (329)
66 cd03855 M14_ASTE Peptidase M14 98.0 1.3E-05 2.9E-10 74.5 6.7 70 45-139 41-110 (322)
67 cd06909 M14_ASPA Aspartoacylas 98.0 1.8E-05 3.8E-10 72.2 6.6 87 47-163 1-87 (282)
68 TIGR03242 arg_catab_astE succi 97.9 1.1E-05 2.4E-10 74.9 5.2 69 45-138 40-108 (319)
69 COG3608 Predicted deacylase [G 97.9 2.1E-05 4.5E-10 72.4 6.5 77 30-135 38-114 (331)
70 cd06256 M14_ASTE_ASPA_like_6 A 97.8 2.1E-05 4.5E-10 73.2 4.5 66 47-137 35-100 (327)
71 PRK15036 hydroxyisourate hydro 97.7 6.9E-05 1.5E-09 60.9 5.7 54 250-303 28-94 (137)
72 cd06910 M14_ASTE_ASPA_like_7 A 97.6 7.5E-05 1.6E-09 67.9 4.2 71 47-138 1-71 (272)
73 cd00421 intradiol_dioxygenase 97.5 0.00029 6.3E-09 58.0 6.2 54 250-303 13-95 (146)
74 PF10994 DUF2817: Protein of u 97.5 0.00034 7.4E-09 65.3 7.3 104 4-135 12-119 (341)
75 PF07210 DUF1416: Protein of u 97.2 0.002 4.3E-08 47.0 7.1 51 251-302 10-64 (85)
76 COG2988 Succinylglutamate desu 97.1 0.0045 9.8E-08 55.7 9.6 102 7-139 8-111 (324)
77 cd03458 Catechol_intradiol_dio 97.0 0.0019 4.1E-08 57.8 6.8 44 251-294 107-169 (256)
78 PF00775 Dioxygenase_C: Dioxyg 97.0 0.0024 5.3E-08 54.5 6.8 45 251-295 32-97 (183)
79 cd03462 1,2-CCD chlorocatechol 96.9 0.0026 5.7E-08 56.6 6.7 44 251-294 102-164 (247)
80 TIGR02465 chlorocat_1_2 chloro 96.9 0.003 6.5E-08 56.3 6.7 45 251-295 101-164 (246)
81 TIGR02439 catechol_proteo cate 96.8 0.0034 7.4E-08 57.0 6.7 45 251-295 131-194 (285)
82 cd03459 3,4-PCD Protocatechuat 96.8 0.0039 8.4E-08 52.0 6.4 53 251-303 18-106 (158)
83 cd03461 1,2-HQD Hydroxyquinol 96.7 0.0035 7.5E-08 56.8 6.3 45 251-295 123-186 (277)
84 cd03460 1,2-CTD Catechol 1,2 d 96.7 0.0041 8.8E-08 56.5 6.7 45 251-295 127-190 (282)
85 TIGR02423 protocat_alph protoc 96.7 0.0048 1E-07 53.1 6.8 53 251-303 42-130 (193)
86 cd03463 3,4-PCD_alpha Protocat 96.7 0.0045 9.7E-08 52.9 6.3 53 251-303 39-126 (185)
87 cd03863 M14_CPD_II The second 96.7 0.00083 1.8E-08 63.7 2.0 16 148-163 150-165 (375)
88 TIGR02422 protocat_beta protoc 96.6 0.007 1.5E-07 53.1 7.0 45 251-295 63-131 (220)
89 cd03869 M14_CPX_like Peptidase 96.5 0.0013 2.9E-08 62.7 2.3 16 148-163 180-195 (405)
90 cd03867 M14_CPZ Peptidase M14- 96.5 0.0012 2.6E-08 63.1 1.9 15 149-163 171-185 (395)
91 TIGR02438 catachol_actin catec 96.5 0.0066 1.4E-07 55.0 6.4 45 251-295 135-198 (281)
92 cd03464 3,4-PCD_beta Protocate 96.5 0.01 2.2E-07 52.0 7.3 45 251-295 68-136 (220)
93 cd03866 M14_CPM Peptidase M14 96.4 0.0017 3.6E-08 61.8 2.2 16 148-163 148-163 (376)
94 COG3485 PcaH Protocatechuate 3 96.3 0.0084 1.8E-07 52.7 5.5 46 250-295 74-142 (226)
95 PF02369 Big_1: Bacterial Ig-l 95.9 0.027 5.7E-07 43.2 6.1 53 251-303 27-91 (100)
96 PF05738 Cna_B: Cna protein B- 95.9 0.019 4.2E-07 40.5 5.0 42 263-304 1-51 (70)
97 smart00634 BID_1 Bacterial Ig- 95.8 0.044 9.4E-07 41.2 7.0 54 251-304 22-86 (92)
98 KOG1948|consensus 95.3 0.03 6.4E-07 57.2 5.6 53 250-303 317-372 (1165)
99 cd06245 M14_CPD_III The third 95.1 0.014 3.1E-07 55.2 2.7 15 148-162 146-160 (363)
100 COG5266 CbiK ABC-type Co2+ tra 94.9 0.095 2.1E-06 46.5 6.9 50 251-301 174-241 (264)
101 PF09430 DUF2012: Protein of u 94.8 0.047 1E-06 43.5 4.5 42 263-304 7-52 (123)
102 TIGR02962 hdxy_isourate hydrox 94.7 0.065 1.4E-06 42.0 5.0 53 251-303 3-69 (112)
103 PF14686 fn3_3: Polysaccharide 94.7 0.13 2.9E-06 39.0 6.6 52 251-302 5-70 (95)
104 PF08308 PEGA: PEGA domain; I 94.6 0.057 1.2E-06 38.3 4.0 38 263-305 10-48 (71)
105 PF10670 DUF4198: Domain of un 94.5 0.12 2.6E-06 44.6 6.8 50 251-301 153-212 (215)
106 PF09892 DUF2119: Uncharacteri 93.8 0.069 1.5E-06 45.2 3.5 70 47-129 7-87 (193)
107 cd03864 M14_CPN Peptidase M14 93.7 0.043 9.4E-07 52.4 2.4 44 121-164 126-184 (392)
108 KOG1948|consensus 93.2 0.15 3.2E-06 52.4 5.4 53 250-302 120-176 (1165)
109 PF11974 MG1: Alpha-2-macroglo 93.0 0.47 1E-05 36.1 6.7 51 250-300 14-70 (97)
110 cd03865 M14_CPE_H Peptidase M1 91.8 0.1 2.3E-06 49.9 2.3 43 122-164 131-192 (402)
111 PF06488 L_lac_phage_MSP: Lact 91.5 0.26 5.7E-06 42.3 4.1 28 277-304 260-289 (301)
112 PF01190 Pollen_Ole_e_I: Polle 91.3 0.57 1.2E-05 35.4 5.4 33 260-292 18-58 (97)
113 COG4073 Uncharacterized protei 91.2 0.2 4.3E-06 41.6 2.9 38 50-100 18-55 (198)
114 cd03457 intradiol_dioxygenase_ 91.1 0.42 9E-06 41.0 5.0 45 251-295 29-100 (188)
115 PF00576 Transthyretin: HIUase 90.8 0.21 4.5E-06 39.1 2.6 52 250-301 2-68 (112)
116 cd03859 M14_CPT Peptidase M14- 89.9 0.57 1.2E-05 43.0 5.2 58 106-167 176-234 (295)
117 PF14347 DUF4399: Domain of un 89.8 1.2 2.7E-05 33.1 5.9 52 249-303 20-73 (87)
118 cd05822 TLP_HIUase HIUase (5-h 89.5 1 2.2E-05 35.2 5.6 53 251-303 3-69 (112)
119 cd05469 Transthyretin_like Tra 88.4 1.1 2.5E-05 35.0 5.1 52 251-302 3-68 (113)
120 cd06227 Peptidase_M14-like_2 A 88.3 0.91 2E-05 41.3 5.2 65 106-176 162-226 (272)
121 PF10794 DUF2606: Protein of u 88.2 1.6 3.5E-05 34.2 5.7 53 250-302 43-108 (131)
122 smart00095 TR_THY Transthyreti 87.7 1.3 2.7E-05 35.2 5.0 52 250-301 5-70 (121)
123 cd05821 TLP_Transthyretin Tran 87.0 1.3 2.9E-05 35.0 4.8 54 250-303 8-75 (121)
124 cd06226 M14_CPT_like Peptidase 86.3 1.3 2.7E-05 40.8 5.0 54 107-167 163-232 (293)
125 PF12985 DUF3869: Domain of un 85.5 0.79 1.7E-05 35.2 2.7 44 250-304 23-68 (104)
126 COG2351 Transthyretin-like pro 84.2 3.5 7.7E-05 32.3 5.8 53 251-303 11-77 (124)
127 PF13115 YtkA: YtkA-like 81.8 6.7 0.00015 28.5 6.4 47 251-298 24-85 (86)
128 PF12866 DUF3823: Protein of u 81.5 3.3 7.2E-05 36.4 5.4 49 250-298 23-83 (222)
129 KOG3006|consensus 81.3 3.9 8.5E-05 32.1 5.0 54 250-303 22-89 (132)
130 cd06246 M14_CPB2 Peptidase M14 80.9 3 6.5E-05 38.4 5.2 61 108-175 171-237 (300)
131 smart00631 Zn_pept Zn_pept. 79.3 2.8 6E-05 38.1 4.3 68 106-175 160-228 (277)
132 cd06247 M14_CPO Peptidase M14 78.7 4.7 0.0001 37.1 5.7 62 108-176 170-237 (298)
133 cd03871 M14_CPB Peptidase M14 78.6 4.8 0.0001 37.1 5.7 61 108-175 171-237 (300)
134 PF07495 Y_Y_Y: Y_Y_Y domain; 77.1 3.8 8.3E-05 28.0 3.6 18 284-301 30-48 (66)
135 cd03872 M14_CPA6 Carboxypeptid 76.1 5.7 0.00012 36.6 5.4 62 108-176 168-235 (300)
136 PF13860 FlgD_ig: FlgD Ig-like 72.7 11 0.00024 27.3 5.3 49 250-301 26-78 (81)
137 cd03868 M14_CPD_I The first ca 71.7 1.9 4.1E-05 41.0 1.2 34 107-140 155-188 (372)
138 PF11008 DUF2846: Protein of u 69.7 11 0.00024 29.4 5.0 37 265-302 42-78 (117)
139 cd03860 M14_CP_A-B_like The Pe 68.2 8.8 0.00019 35.1 4.8 63 106-175 163-231 (294)
140 KOG2650|consensus 68.0 4.7 0.0001 38.9 3.0 60 109-175 290-355 (418)
141 PF05751 FixH: FixH; InterPro 67.5 29 0.00063 27.8 7.3 49 250-298 70-130 (146)
142 PF13953 PapC_C: PapC C-termin 64.4 13 0.00028 26.0 4.0 45 254-299 2-48 (68)
143 PF05688 DUF824: Salmonella re 63.4 10 0.00023 24.7 3.0 21 251-271 17-37 (47)
144 cd06228 Peptidase_M14-like_3 A 62.3 18 0.0004 33.8 5.7 67 109-175 171-267 (332)
145 PF14734 DUF4469: Domain of un 61.9 35 0.00075 26.2 6.2 11 289-299 74-84 (102)
146 smart00557 IG_FLMN Filamin-typ 60.4 37 0.0008 25.1 6.1 42 251-302 34-78 (93)
147 PF01835 A2M_N: MG2 domain; I 58.0 50 0.0011 24.4 6.6 50 251-300 19-85 (99)
148 PF04234 CopC: CopC domain; I 57.8 9.6 0.00021 28.7 2.5 45 252-302 36-82 (97)
149 COG1470 Predicted membrane pro 54.1 30 0.00064 33.8 5.6 52 251-304 189-241 (513)
150 PF07411 DUF1508: Domain of un 54.0 8.7 0.00019 25.2 1.5 26 280-305 1-26 (49)
151 COG3422 Uncharacterized conser 51.5 26 0.00056 23.9 3.4 29 277-305 7-35 (59)
152 PF00630 Filamin: Filamin/ABP2 50.3 79 0.0017 23.2 6.6 25 278-302 65-92 (101)
153 PF03785 Peptidase_C25_C: Pept 49.8 69 0.0015 23.4 5.7 41 264-305 26-74 (81)
154 PF01060 DUF290: Transthyretin 49.7 34 0.00074 24.7 4.3 35 253-288 2-44 (80)
155 PF01690 PLRV_ORF5: Potato lea 49.2 16 0.00034 35.6 3.0 23 283-305 90-112 (465)
156 PF13754 Big_3_4: Bacterial Ig 49.1 45 0.00098 22.1 4.5 27 275-301 4-33 (54)
157 PRK06655 flgD flagellar basal 48.7 23 0.00049 31.3 3.7 47 251-301 128-179 (225)
158 cd03858 M14_CP_N-E_like Carbox 45.2 11 0.00024 35.8 1.3 34 107-140 156-189 (374)
159 PRK15310 fimbrial outer membra 44.7 43 0.00094 35.3 5.5 39 250-291 787-825 (895)
160 PRK12633 flgD flagellar basal 42.5 35 0.00077 30.2 4.0 45 251-301 131-182 (230)
161 PF07523 Big_3: Bacterial Ig-l 41.3 28 0.00061 24.0 2.6 42 250-303 18-59 (67)
162 PF14054 DUF4249: Domain of un 40.6 55 0.0012 29.5 5.1 43 262-304 59-112 (298)
163 COG4932 Predicted outer membra 38.8 38 0.00083 37.1 4.1 47 251-297 1065-1118(1531)
164 cd06905 Peptidase_M14-like_8 A 38.5 50 0.0011 31.3 4.6 53 109-165 241-294 (360)
165 PF09154 DUF1939: Domain of un 38.3 47 0.001 22.5 3.2 22 276-297 35-56 (57)
166 PF07550 DUF1533: Protein of u 37.4 29 0.00064 24.0 2.2 16 290-305 45-60 (65)
167 smart00771 ZipA_C ZipA, C-term 37.3 34 0.00074 27.4 2.8 34 233-266 89-122 (131)
168 cd03870 M14_CPA Peptidase M14 37.2 27 0.00058 32.2 2.5 62 108-176 171-237 (301)
169 cd06907 M14_AGBL2-3_like Pepti 36.8 96 0.0021 28.0 5.9 26 114-139 140-166 (261)
170 COG4932 Predicted outer membra 36.5 51 0.0011 36.1 4.6 43 256-298 1163-1212(1531)
171 PF03404 Mo-co_dimer: Mo-co ox 36.5 1E+02 0.0022 24.7 5.4 52 250-301 30-100 (131)
172 PHA00691 hypothetical protein 36.4 42 0.00092 22.7 2.7 22 280-301 10-31 (68)
173 cd00231 ZipA ZipA C-terminal d 35.6 38 0.00082 27.2 2.8 34 233-266 88-121 (130)
174 cd00596 Peptidase_M14_like The 35.4 67 0.0014 27.0 4.6 53 107-166 84-136 (196)
175 cd06248 M14_CPA_CPB_like Pepti 34.9 30 0.00065 31.9 2.4 62 108-175 172-241 (304)
176 PRK12813 flgD flagellar basal 32.8 77 0.0017 27.9 4.5 45 251-301 126-174 (223)
177 TIGR03769 P_ac_wall_RPT actino 30.6 38 0.00083 21.3 1.7 14 289-302 10-23 (41)
178 cd03862 Peptidase_M14-like_7 A 30.5 89 0.0019 28.4 4.7 65 104-175 131-203 (273)
179 PF11589 DUF3244: Domain of un 28.7 91 0.002 23.7 3.9 44 258-301 42-94 (106)
180 cd06236 M14_AGBL5_like Peptida 28.5 1.7E+02 0.0037 27.1 6.2 24 116-139 164-188 (304)
181 TIGR03000 plancto_dom_1 Planct 28.4 79 0.0017 22.8 3.1 34 264-298 11-48 (75)
182 PF10994 DUF2817: Protein of u 27.7 58 0.0013 30.6 3.1 43 193-237 258-303 (341)
183 PRK10301 hypothetical protein; 27.6 75 0.0016 25.2 3.3 14 289-302 96-109 (124)
184 KOG2649|consensus 27.4 24 0.00051 34.6 0.4 43 121-163 190-247 (500)
185 PRK12812 flgD flagellar basal 27.3 75 0.0016 28.7 3.6 45 251-301 143-194 (259)
186 cd06229 M14_Endopeptidase_I Pe 27.0 92 0.002 27.8 4.1 50 107-168 151-200 (255)
187 COG4850 Uncharacterized conser 27.0 2.1E+02 0.0046 26.9 6.4 31 272-302 108-144 (373)
188 PF04354 ZipA_C: ZipA, C-termi 26.8 48 0.001 26.5 2.0 34 233-266 89-122 (131)
189 PRK09619 flgD flagellar basal 26.7 96 0.0021 27.2 4.1 45 251-301 125-172 (218)
190 PF04952 AstE_AspA: Succinylgl 25.7 1.9E+02 0.0042 25.9 6.1 44 200-247 152-195 (292)
191 PF15162 DUF4580: Domain of un 25.7 74 0.0016 26.3 2.9 43 45-105 74-117 (162)
192 PF12897 Aminotran_MocR: Alani 24.8 51 0.0011 31.6 2.1 39 67-114 160-199 (425)
193 PRK05842 flgD flagellar basal 24.7 1.1E+02 0.0024 28.2 4.2 47 250-300 167-220 (295)
194 PF05127 Helicase_RecD: Helica 24.5 69 0.0015 27.1 2.7 31 45-75 113-143 (177)
195 PF02246 B1: Protein L b1 doma 23.2 41 0.00088 23.0 0.8 25 278-302 44-68 (69)
196 PF01868 UPF0086: Domain of un 22.9 2.5E+02 0.0054 20.8 5.1 46 249-297 28-74 (89)
197 PRK06764 hypothetical protein; 22.7 59 0.0013 24.0 1.6 54 209-262 9-68 (105)
198 COG1588 POP4 RNase P/RNase MRP 22.4 2.4E+02 0.0052 21.3 4.9 42 249-294 31-72 (95)
199 PF04219 DUF413: Protein of un 21.7 73 0.0016 24.0 2.0 32 131-166 5-36 (93)
200 PLN02757 sirohydrochlorine fer 20.7 4.6E+02 0.01 21.4 6.9 60 45-105 12-88 (154)
201 PF10648 Gmad2: Immunoglobulin 20.3 2.5E+02 0.0054 20.7 4.7 45 251-300 31-80 (88)
202 PRK12634 flgD flagellar basal 20.2 1.4E+02 0.003 26.3 3.8 46 251-300 124-174 (221)
203 PF09087 Cyc-maltodext_N: Cycl 20.0 3.8E+02 0.0082 19.9 5.6 43 259-301 21-72 (88)
No 1
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3.4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
Probab=100.00 E-value=1.5e-76 Score=555.16 Aligned_cols=305 Identities=54% Similarity=0.995 Sum_probs=281.1
Q ss_pred CHHHHHHHHHhCCCcEEEEEeeeccCCceeeEEEEcCCCCCCCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcC-C
Q psy17404 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYK-I 79 (305)
Q Consensus 1 ~~~~l~~l~~~~p~~v~~~~iG~S~eGr~i~~~~i~~~~~~~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~-~ 79 (305)
|++||++|+++||+++++.+||+|+|||+|++++||++++.+...||.|+++|+||||||+|++++++++++||++|. .
T Consensus 11 ~~~~L~~l~~~~p~i~~l~~IG~S~eGR~I~~l~Is~~~~~~~~~kP~v~i~g~iHg~E~ig~~~~l~l~~~L~~~y~~~ 90 (402)
T cd03865 11 LREALVSVWLQCPSISRIYTVGRSFEGRELLVIEMSDNPGEHEPGEPEFKYIGNMHGNEAVGRELLIYLAQYLCNEYQKG 90 (402)
T ss_pred HHHHHHHHHHHCCCceEEEecccccCCCeEEEEEeecCCCCCCCCCCEEEEECCcCCCcHHHHHHHHHHHHHHHHhcccC
Confidence 678999999999999999999999999999999999876665667999999999999999999999999999999994 5
Q ss_pred ChHHHHhhccceEEEEeccCchhHHHHH------------H---------------------------------------
Q psy17404 80 DDRVTRMLQTTRIHLMPSMNPDGYERAR------------E--------------------------------------- 108 (305)
Q Consensus 80 d~~~~~ll~~~~~~iiP~~NPDG~~~~~------------~--------------------------------------- 108 (305)
|+.+++||++++|+|+|++||||+++.. |
T Consensus 91 d~~v~~LLd~~~i~IvP~~NPDG~e~~~~~~~~~~~w~~~R~Na~GvDLNRNFp~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (402)
T cd03865 91 NETIINLIHSTRIHIMPSLNPDGFEKAASQPGELKDWFVGRSNAQGIDLNRNFPDLDRIVYVNEREGGPNNHLLKNMKKA 170 (402)
T ss_pred CHHHHHHHhcCEEEEEeeeCCchHHhhhhcCccccchhhhcccccCcccCCCCCcccchhhhhhccCCCccccccccccc
Confidence 8999999999999999999999999742 1
Q ss_pred ------------hhhhhhhccccccccceecccccceecCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhcCccCCCC--
Q psy17404 109 ------------AVEKWLQDIPFVLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLLASSYANAHKKMYKDP-- 174 (305)
Q Consensus 109 ------------~~~~~~k~~~~~~~~~~~g~dlnrnyp~~~~~~~~p~~~~~~pe~~~~~~l~~~y~~~h~~~~~~~-- 174 (305)
++++|.++.+|++++|+||++|..||||++...+....|+.+||+.+|+.||.+|+..|+.|+..+
T Consensus 171 ~~~~~~~~pEt~Avm~w~~~~~FvlsanlHgG~lva~YP~D~~~~~~~~~~s~~pDd~~f~~lA~~Ya~~h~~m~~~~~~ 250 (402)
T cd03865 171 VDENTKLAPETKAVIHWIMDIPFVLSANLHGGDLVANYPYDETRSGSAHEYSACPDDAIFKSLARAYSSLNPAMSDPNRP 250 (402)
T ss_pred cccccCCChHHHHHHHHHHhCCcEEEEEccCccEEEECCCCCCCCCCcccccCCCChHHHHHHHHHHHhhCHHhhcCCCC
Confidence 345677778899999999999999999998765544567899999999999999999999998754
Q ss_pred CCCCC-CCCCCCCccccCceeeeccCccchhhhhhcceeEEEEEecCCCCCCCCCchhHHHhhhhhHHHHHhhhccceee
Q psy17404 175 GCPEY-PEENFPGGIVNGAQWYVVSGGMQDYNYIHANTLEITLELGCYKFPPAKDLPSYWEDNLPALLSYIEQVHRGVAG 253 (305)
Q Consensus 175 ~~~~~-~~~~~~~g~~~g~~~Y~~~G~~~Dw~y~~~~~~~~tiEl~~~~~pp~~~i~~~~~en~~~l~~~~~~~~~gi~G 253 (305)
+|... ....|..||+||+.||+..|+|+||.|.+.+|+.+|+||+|++||++++|+.+|++|+++|+++|++++.||+|
T Consensus 251 ~c~~~~~~~~f~~GitNGa~Wy~~~GgmqD~ny~~~nc~eiT~El~c~K~P~~~~L~~~W~~n~~all~~~~q~~~gI~G 330 (402)
T cd03865 251 PCRKNDDDSSFVDGTTNGGAWYSVPGGMQDFNYLSSNCFEITVELSCDKFPPEETLKQYWEDNKNSLVNYIEQVHRGVKG 330 (402)
T ss_pred CCCCCCccccCCCCeecCceecccCCcccchhhhccCceEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHhccceEE
Confidence 47543 24678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECcCCCCccccEEEEeeeeEeEeeCCCceEEEecCCceEEEEEEecCccC
Q psy17404 254 FVKGREGEGVAEASIAVEGLGHVVYSAQDGDYWRLLAPGNYTLHVSAPGEDQ 305 (305)
Q Consensus 254 ~v~d~~g~pi~~A~i~i~~~~~~~~t~~~G~y~~~l~~G~y~l~vs~~Gy~~ 305 (305)
+|+|++|+||++|+|.|+|+.++++|+.+|.|++.|+||+|+|+||+.||++
T Consensus 331 ~V~D~~g~pI~~AtV~V~g~~~~~~T~~~G~Y~~~L~pG~Ytv~vsa~Gy~~ 382 (402)
T cd03865 331 FVKDLQGNPIANATISVEGIDHDITSAKDGDYWRLLAPGNYKLTASAPGYLA 382 (402)
T ss_pred EEECCCCCcCCCeEEEEEcCccccEECCCeeEEECCCCEEEEEEEEecCccc
Confidence 9999999999999999999999999999999998999999999999999985
No 2
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=100.00 E-value=4.7e-76 Score=550.89 Aligned_cols=300 Identities=52% Similarity=0.931 Sum_probs=274.5
Q ss_pred CHHHHHHHHHhCCCcEEEEEeeeccCCceeeEEEEcCCCCCCCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcCCC
Q psy17404 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKID 80 (305)
Q Consensus 1 ~~~~l~~l~~~~p~~v~~~~iG~S~eGr~i~~~~i~~~~~~~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d 80 (305)
|++||++|+++||+++++.+||+|+|||+|++++|+++++....+||.|+++|+||||||+|++++++|+++||++|++|
T Consensus 12 i~~~l~~l~~~~P~i~~l~~IG~S~eGR~I~~l~Is~~~~~~~~~kp~v~~~g~iHg~E~ig~~~~l~li~~L~~~y~~d 91 (375)
T cd03863 12 MEIFLRRYANEYPSITRLYSVGKSVELRELYVMEISDNPGIHEPGEPEFKYIGNMHGNEVVGRELLLNLIEYLCKNFGTD 91 (375)
T ss_pred HHHHHHHHHHHCCCcEEEEEcccCCccceEEEEEEecCCCcccCCCCeEEEEccccCCcHHHHHHHHHHHHHHHHhccCC
Confidence 67899999999999999999999999999999999986655455799999999999999999999999999999999999
Q ss_pred hHHHHhhccceEEEEeccCchhHHHHHHhhhhhhhccccccccceecccccceecCCCCCCC---C--------------
Q psy17404 81 DRVTRMLQTTRIHLMPSMNPDGYERAREAVEKWLQDIPFVLSANLHGGSLVANYPYDDNQAM---K-------------- 143 (305)
Q Consensus 81 ~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~~~~~k~~~~~~~~~~~g~dlnrnyp~~~~~~~---~-------------- 143 (305)
+.+++||++++|+|+|++|||||+++++..+.|+|.| .|+.|+|||||||+.|.... .
T Consensus 92 ~~v~~ll~~~~i~IvP~~NPDG~e~~~~~~~~~~~~R-----~n~~GVDLNRNfp~~~~~~~~~~EpEt~Av~~~~~~~~ 166 (375)
T cd03863 92 PEVTDLVQSTRIHIMPSMNPDGYEKSQEGDRGGTVGR-----NNSNNYDLNRNFPDQFFQVTDPPQPETLAVMSWLKSYP 166 (375)
T ss_pred HHHHHHHhCCEEEEEeccCCchHHheecCCccccccc-----ccCCCcccccCCccccccCCCCCcHHHHHHHHHHhhCC
Confidence 9999999999999999999999999988788887765 46789999999998885321 0
Q ss_pred ----------------CCC--------CCCCCcHHHHHHHHHHHHhhcCccCCCCCCCCCC-CCCCCCccccCceeeecc
Q psy17404 144 ----------------PQV--------DSPTPDDSIFKLLASSYANAHKKMYKDPGCPEYP-EENFPGGIVNGAQWYVVS 198 (305)
Q Consensus 144 ----------------p~~--------~~~~pe~~~~~~l~~~y~~~h~~~~~~~~~~~~~-~~~~~~g~~~g~~~Y~~~ 198 (305)
|.. +..+||...|+.||+.|+..|..|+...+|.... .+.|..||+||+.||+++
T Consensus 167 f~l~~~lHsg~~~~~yPy~~~~~~~~~~~~~pd~~~~~~la~~~a~a~~~m~~~~~c~~~~~~~~~~~Gi~nga~wY~~~ 246 (375)
T cd03863 167 FVLSANLHGGSLVVNYPFDDDEQGIAIYSKSPDDAVFQQLALSYSKENKKMYQGSPCKDLYPTEYFPHGITNGAQWYNVP 246 (375)
T ss_pred ceEEEEecCCCEEEEccCcCCCcccccCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCccccccccCCCCccCCceEEecC
Confidence 322 3468999999999999999999999877887432 345889999999999999
Q ss_pred CccchhhhhhcceeEEEEEecCCCCCCCCCchhHHHhhhhhHHHHHhhhccceeeEEEC-cCCCCccccEEEEeeeeEeE
Q psy17404 199 GGMQDYNYIHANTLEITLELGCYKFPPAKDLPSYWEDNLPALLSYIEQVHRGVAGFVKG-REGEGVAEASIAVEGLGHVV 277 (305)
Q Consensus 199 G~~~Dw~y~~~~~~~~tiEl~~~~~pp~~~i~~~~~en~~~l~~~~~~~~~gi~G~v~d-~~g~pi~~A~i~i~~~~~~~ 277 (305)
|+|+||+|..++|+++|+||+|++||++++|+..|++|+++|++++++++.||+|+|+| .+|+||++|+|.|+|+++++
T Consensus 247 GgmqDw~y~~~~~~e~T~El~~~k~p~~~~l~~~w~~n~~all~~~~~~~~gI~G~V~D~~~g~pl~~AtV~V~g~~~~~ 326 (375)
T cd03863 247 GGMQDWNYLNTNCFEVTIELGCVKYPKEEELPKYWEQNRRSLLQFMKQVHRGVRGFVLDATDGRGILNATISVADINHPV 326 (375)
T ss_pred CChhhhhhhhcCeEEEEEecCcccCCCHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEeCCCCCCCCCeEEEEecCcCce
Confidence 99999999999999999999999999999999999999999999999999999999999 58999999999999999999
Q ss_pred eeCCCceEEEecCCceEEEEEEecCccC
Q psy17404 278 YSAQDGDYWRLLAPGNYTLHVSAPGEDQ 305 (305)
Q Consensus 278 ~t~~~G~y~~~l~~G~y~l~vs~~Gy~~ 305 (305)
+||.+|.|++.|+||+|+|+||++||++
T Consensus 327 ~Td~~G~f~~~l~pG~ytl~vs~~GY~~ 354 (375)
T cd03863 327 TTYKDGDYWRLLVPGTYKVTASARGYDP 354 (375)
T ss_pred EECCCccEEEccCCeeEEEEEEEcCccc
Confidence 9999999999999999999999999975
No 3
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Proteins belonging to this subgroup include CP-like protein X1 (CPX1), CP-like protein X2 (CPX2), and aortic CP-like protein (ACLP) and its isoform adipocyte enhancer binding protein-1 (AEBP1). AEBP1 is a truncated form of ACLP, which may arise from alternative splicing of the gene. These proteins are inactive towards standard CP substrates because they lack one or more critical active site and substrate-binding residues that are necessary for activity. They may function as binding proteins rather than as active CPs or display catalytic activity toward other substrates. Pro
Probab=100.00 E-value=4.1e-75 Score=545.23 Aligned_cols=299 Identities=45% Similarity=0.849 Sum_probs=271.1
Q ss_pred CHHHHHHHHHhCCCcEEEEEeeeccCCceeeEEEEcCCCCCCCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHc-CC
Q psy17404 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNY-KI 79 (305)
Q Consensus 1 ~~~~l~~l~~~~p~~v~~~~iG~S~eGr~i~~~~i~~~~~~~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y-~~ 79 (305)
|+++|++|+++||+++++.+||+|+|||+|++++|+++++.+...||.|+++|+||||||+|++++++++++||++| ..
T Consensus 11 m~~~L~~la~~yP~i~~l~sIGkS~EGR~L~~l~Is~~~~~~~~~kP~v~~~g~iHgrE~ig~~~~l~li~~L~~~y~~~ 90 (405)
T cd03869 11 MRQLMKVVNEMCPNITRIYNIGKSYQGLKLYAMEISDNPGEHELGEPEFRYVAGMHGNEVLGRELLLLLMQFLCQEYLAG 90 (405)
T ss_pred HHHHHHHHHHHCCCceEEEEeEECcCCceEEEEEEecCCccccCCCCeEEEEcccCCCcHHHHHHHHHHHHHHHHhhhcC
Confidence 67899999999999999999999999999999999987665556799999999999999999999999999999999 57
Q ss_pred ChHHHHhhccceEEEEeccCchhHHHHHHh---hhhhhhccccccccceecccccceec----CCCCCC-----------
Q psy17404 80 DDRVTRMLQTTRIHLMPSMNPDGYERAREA---VEKWLQDIPFVLSANLHGGSLVANYP----YDDNQA----------- 141 (305)
Q Consensus 80 d~~~~~ll~~~~~~iiP~~NPDG~~~~~~~---~~~~~k~~~~~~~~~~~g~dlnrnyp----~~~~~~----------- 141 (305)
|+.+++||++++|+|+|++|||||+++++. .+.|+|+|. ||.|+||||||| +.|+..
T Consensus 91 d~~v~~Ll~~~~i~IvP~~NPDG~e~s~~~~~~~~~Wrk~R~-----na~GVDLNRNFp~~~~~~W~~~~~~~~~~~~~~ 165 (405)
T cd03869 91 NPRVVHLVEETRIHLLPSMNPDGYEKAYEAGSELGGWALGRW-----TEEGIDINHNFPDLNTILWEAEDKKKVPRKVPN 165 (405)
T ss_pred CHHHHHHHhcCeEEEEeeeCCchhhhhhhcCccccccccCcc-----CCCCccccCCCcccccccccccccccccccccc
Confidence 999999999999999999999999998763 577998863 699999999999 466411
Q ss_pred ---------------CC------------------------------CC----------CCCCCCcHHHHHHHHHHHHhh
Q psy17404 142 ---------------MK------------------------------PQ----------VDSPTPDDSIFKLLASSYANA 166 (305)
Q Consensus 142 ---------------~~------------------------------p~----------~~~~~pe~~~~~~l~~~y~~~ 166 (305)
.. |. .|+.+||+.+|+.||++|+..
T Consensus 166 ~~~Pc~~~Y~G~~~~sEPET~Av~~~i~~~~FvLSanlHgG~lv~~YPyd~~~~~~~~~~~~~tpDd~~Fr~LA~~Ya~~ 245 (405)
T cd03869 166 HHIPIPEWYLSENATVAPETRAVIAWMEKIPFVLGANLQGGELVVSYPYDMTRTPWATQEATPTPDDAVFRWLATSYAST 245 (405)
T ss_pred cCCCCccccCCCCCCCcHHHHHHHHHHHhCCceEEEEecCccEEEEcCcccccCCccccCCCCCCCHHHHHHHHHHHHHh
Confidence 00 21 134689999999999999999
Q ss_pred cCccCCCC--CCCCCCCCCCCCccccCceeeeccCccchhhhhhcceeEEEEEecCCCCCCCCCchhHHHhhhhhHHHHH
Q psy17404 167 HKKMYKDP--GCPEYPEENFPGGIVNGAQWYVVSGGMQDYNYIHANTLEITLELGCYKFPPAKDLPSYWEDNLPALLSYI 244 (305)
Q Consensus 167 h~~~~~~~--~~~~~~~~~~~~g~~~g~~~Y~~~G~~~Dw~y~~~~~~~~tiEl~~~~~pp~~~i~~~~~en~~~l~~~~ 244 (305)
|+.|+... +|... ...|..||+||+.||++.|+|+||.|.+.+|+.+|+||+|++|||+++|+..|++|+++|+.+|
T Consensus 246 h~~M~~~~~~~c~~~-~~~~~~GitNGa~Wy~~~GgmqD~nY~~~ncfEiTlElsc~K~P~~~~L~~~W~~N~~all~~~ 324 (405)
T cd03869 246 HLLMTDASRRVCHTE-DFQKEDGIINGASWHTVAGSMNDFSYLHTNCFELSVYLGCDKFPHESELPEEWENNKESLLVFM 324 (405)
T ss_pred CHHhhcCCCCCCCCc-ccccCCCceeCCeeccCCCcccchhhhccCeEEEEEeccCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 99998764 47531 2346899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccceeeEEECcCCCCccccEEEEeeeeEeEeeCCCceEEEecCCceEEEEEEecCccC
Q psy17404 245 EQVHRGVAGFVKGREGEGVAEASIAVEGLGHVVYSAQDGDYWRLLAPGNYTLHVSAPGEDQ 305 (305)
Q Consensus 245 ~~~~~gi~G~v~d~~g~pi~~A~i~i~~~~~~~~t~~~G~y~~~l~~G~y~l~vs~~Gy~~ 305 (305)
++++.||+|.|+|++|.||++|+|.|+|+.+.++|..+|+||+.|.||+|+|++++.||.+
T Consensus 325 ~~vh~GikG~V~d~~g~~i~~a~i~v~g~~~~v~t~~~GdywRll~pG~y~v~~~a~gy~~ 385 (405)
T cd03869 325 EQVHRGIKGVVRDKTGKGIPNAIISVEGINHDIRTASDGDYWRLLNPGEYRVTAHAEGYTS 385 (405)
T ss_pred HHHhcCceEEEECCCCCcCCCcEEEEecCccceeeCCCCceEEecCCceEEEEEEecCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999964
No 4
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=100.00 E-value=5.1e-74 Score=539.47 Aligned_cols=301 Identities=54% Similarity=0.962 Sum_probs=271.9
Q ss_pred CHHHHHHHHHhCCCcEEEEEeeeccCCceeeEEEEcCCCCCCCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcC-C
Q psy17404 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYK-I 79 (305)
Q Consensus 1 ~~~~l~~l~~~~p~~v~~~~iG~S~eGr~i~~~~i~~~~~~~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~-~ 79 (305)
|+++|++|+++||+++++.+||+|+|||+|++++|+++++.+...||+|+++|+||||||+|++++++|+++||++|. .
T Consensus 7 m~~~L~~l~~~yP~i~~l~sIG~SveGR~i~~l~is~~~~~~~~~kp~v~~~g~iHg~E~ig~e~ll~l~~~L~~~y~~~ 86 (392)
T cd03864 7 LVRALYAVQNECPYITRIYSIGRSVEGRHLYVLEFSDNPGIHEPLEPEFKYVGNMHGNEVLGRELLIQLSEFLCEEYRNG 86 (392)
T ss_pred HHHHHHHHHHHCCCeEEEEEeeeccCCceEEEEEecCCCccccCCCCEEEEEcccCCCcHHHHHHHHHHHHHHHHhcccC
Confidence 678999999999999999999999999999999999977655567999999999999999999999999999999984 5
Q ss_pred ChHHHHhhccceEEEEeccCchhHHHHHH---------------------------------------------------
Q psy17404 80 DDRVTRMLQTTRIHLMPSMNPDGYERARE--------------------------------------------------- 108 (305)
Q Consensus 80 d~~~~~ll~~~~~~iiP~~NPDG~~~~~~--------------------------------------------------- 108 (305)
|+.+++||++++|+|||++||||++++.+
T Consensus 87 d~~v~~lL~~~~i~ivP~~NPDG~e~~~~~~~~~~~~~~~R~Na~GVDLNRNFp~~~~~~~~~~~~~g~~~~~P~~~~~~ 166 (392)
T cd03864 87 NERITRLIQDTRIHILPSMNPDGYEVAARQGPEFNGYLVGRNNANGVDLNRNFPDLNTLMYYNEKYGGPNHHLPLPDNWK 166 (392)
T ss_pred CHHHHHHHhcCeEEEEeeeCCchHHhhhccCCCcCccccccccccCcccccCCCcccccchhhhccCCccccCCCccccc
Confidence 89999999999999999999999988532
Q ss_pred --------hhhhhhhccccccccceecccccceecCCCCCCCC-----CCCCCCCCcHHHHHHHHHHHHhhcCccCCCCC
Q psy17404 109 --------AVEKWLQDIPFVLSANLHGGSLVANYPYDDNQAMK-----PQVDSPTPDDSIFKLLASSYANAHKKMYKDPG 175 (305)
Q Consensus 109 --------~~~~~~k~~~~~~~~~~~g~dlnrnyp~~~~~~~~-----p~~~~~~pe~~~~~~l~~~y~~~h~~~~~~~~ 175 (305)
++++|.++.+|++++|+||+++..+|||+...... ...|+.+||+.+|+.||.+|+..|+.|....+
T Consensus 167 ~~~epET~Av~~~~~~~~fvls~nlHgG~~v~~YPyd~~~~~~~~~~~~~~~~~tpDd~~f~~la~~ya~~h~~m~~~~~ 246 (392)
T cd03864 167 SQVEPETLAVIQWMQNYNFVLSANLHGGAVVANYPYDKSREPRVRGFRRTAYSPTPDDKLFQKLAKTYSYAHGWMHKGWN 246 (392)
T ss_pred cccCHHHHHHHHHHHhcCcEEEEEccCCceeeeCCcccccccccccccccccCCCCChHHHHHHHHHHHHhCCcccCCCC
Confidence 24455555567777777777777777777653321 13467899999999999999999999998777
Q ss_pred CCCCCCCCCCCccccCceeeeccCccchhhhhhcceeEEEEEecCCCCCCCCCchhHHHhhhhhHHHHHhhhccceeeEE
Q psy17404 176 CPEYPEENFPGGIVNGAQWYVVSGGMQDYNYIHANTLEITLELGCYKFPPAKDLPSYWEDNLPALLSYIEQVHRGVAGFV 255 (305)
Q Consensus 176 ~~~~~~~~~~~g~~~g~~~Y~~~G~~~Dw~y~~~~~~~~tiEl~~~~~pp~~~i~~~~~en~~~l~~~~~~~~~gi~G~v 255 (305)
|. +.|..||+||+.||+++|+|+||.|.+.+|+.+|+||+|++||++++|+..|++|+++|++++++++.||+|+|
T Consensus 247 c~----~~f~~gitnGa~wy~~~GgmqD~~Y~~~nc~e~t~el~c~k~p~~~~l~~~w~~n~~all~~~~~~~~gI~G~V 322 (392)
T cd03864 247 CG----DYFDEGITNGASWYSLSKGMQDFNYLHTNCFEITLELSCDKFPPEEELEREWLGNREALISYIEQVHQGIKGMV 322 (392)
T ss_pred Cc----ccCCCCcccCceeEecCCCchhhhhhccCeeEEEEeccccCCCCHHHHHHHHHHHHHHHHHHHHHhcCeEEEEE
Confidence 84 46899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECcCCCCccccEEEEeeeeEeEeeCCCceEEEecCCceEEEEEEecCccC
Q psy17404 256 KGREGEGVAEASIAVEGLGHVVYSAQDGDYWRLLAPGNYTLHVSAPGEDQ 305 (305)
Q Consensus 256 ~d~~g~pi~~A~i~i~~~~~~~~t~~~G~y~~~l~~G~y~l~vs~~Gy~~ 305 (305)
+|++|+||++|+|.|+|++++++||.+|.|++.|+||+|+|+||+.||++
T Consensus 323 ~D~~g~pi~~A~V~v~g~~~~~~T~~~G~y~r~l~pG~Y~l~vs~~Gy~~ 372 (392)
T cd03864 323 TDENNNGIANAVISVSGISHDVTSGTLGDYFRLLLPGTYTVTASAPGYQP 372 (392)
T ss_pred ECCCCCccCCeEEEEECCccceEECCCCcEEecCCCeeEEEEEEEcCcee
Confidence 99999999999999999999999999999988899999999999999974
No 5
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=100.00 E-value=4.6e-72 Score=522.94 Aligned_cols=299 Identities=38% Similarity=0.665 Sum_probs=264.2
Q ss_pred CHHHHHHHHHhCCCcEEEEEeeeccCCceeeEEEEcCCCCCCCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcCCC
Q psy17404 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKID 80 (305)
Q Consensus 1 ~~~~l~~l~~~~p~~v~~~~iG~S~eGr~i~~~~i~~~~~~~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d 80 (305)
|.+||++|+++||+++++.+||+|+|||+|++++|+++++.....||.|+++|+||||||+|++++++|+++|+.+|++|
T Consensus 8 i~~~l~~l~~~~p~i~~l~~IG~S~eGR~l~~l~Is~~~~~~~~~kp~v~~~~giHg~E~ig~e~~l~l~~~L~~~y~~d 87 (363)
T cd06245 8 LSEFLRGLTLNYPHITNLTSLGQSVEFRPILSLEISNKPNNSEPEEPKIRFVAGIHGNAPVGTELLLALAEFLCMNYGKN 87 (363)
T ss_pred HHHHHHHHHHHCCCceEEEEeeecCCCceEEEEEecCCCCCCCCCCCEEEEECCccCCcHHHHHHHHHHHHHHHHHccCC
Confidence 57899999999999999999999999999999999986654556799999999999999999999999999999999999
Q ss_pred hHHHHhhccceEEEEeccCchhHHHHHHhhhhhhhccccccccceecccccceecCCCCCC---CC--------------
Q psy17404 81 DRVTRMLQTTRIHLMPSMNPDGYERAREAVEKWLQDIPFVLSANLHGGSLVANYPYDDNQA---MK-------------- 143 (305)
Q Consensus 81 ~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~~~~~k~~~~~~~~~~~g~dlnrnyp~~~~~~---~~-------------- 143 (305)
+.+++||++++|+|+|++|||||+++++.. .|++++ +.||+|+|||||||+.|... ..
T Consensus 88 ~~v~~ll~~~~i~ivP~~NPDG~e~~~~~~-~~~~~~----r~na~GvDLNRNf~~~~~g~~~~sepEt~Av~~~~~~~~ 162 (363)
T cd06245 88 PAVTKLIDRTRIVIVPSLNPDGREKAQEKQ-CTSKEG----HTNAHGKDLDTDFTSNASNMSADVQPETKAIIDNLISKD 162 (363)
T ss_pred HHHHHHHhCCEEEEEeccCCchHHHeecCC-CcccCC----CCCcccccCCCCCCcccCCCCCCCcHHHHHHHHHHHhCC
Confidence 999999999999999999999999987522 333322 35677777777777664211 00
Q ss_pred ----------------CCC--CCCCCcHHHHHHHHHHHHhhcCccCCCC-CCCCCCCCCCCCccccCceeeeccCccchh
Q psy17404 144 ----------------PQV--DSPTPDDSIFKLLASSYANAHKKMYKDP-GCPEYPEENFPGGIVNGAQWYVVSGGMQDY 204 (305)
Q Consensus 144 ----------------p~~--~~~~pe~~~~~~l~~~y~~~h~~~~~~~-~~~~~~~~~~~~g~~~g~~~Y~~~G~~~Dw 204 (305)
|.. ...+|+...|+.||++|+..|+.|+... .|.......|..||+||+.||+..|+|+||
T Consensus 163 f~l~~~lH~~~~~~~yPy~~~~~~~pd~~~~~~la~~~a~ah~~m~~~~~~c~~~~~~~~~~Gitnga~wy~~~g~mqd~ 242 (363)
T cd06245 163 FTLSVALDGGSVVATYPYDKPVQTVENKETLKHLAKVYANNHPTMHLGQPGCPNNSDENIPGGVMRGAEWNSHLGSMKDF 242 (363)
T ss_pred ceEEEEEcCCcEEEEecCCCCCcCCCCHHHHHHHHHHHHHhChhhhcCCCCCCCCcccccCCCccccceeecccCCcchh
Confidence 322 2357899999999999999999998655 365434567899999999999999999999
Q ss_pred hhhhcceeEEEEEecCCCCCCCCCchhHHHhhhhhHHHHHhhhccceeeEEECcCCCCccccEEEEeeeeEeEeeCCCce
Q psy17404 205 NYIHANTLEITLELGCYKFPPAKDLPSYWEDNLPALLSYIEQVHRGVAGFVKGREGEGVAEASIAVEGLGHVVYSAQDGD 284 (305)
Q Consensus 205 ~y~~~~~~~~tiEl~~~~~pp~~~i~~~~~en~~~l~~~~~~~~~gi~G~v~d~~g~pi~~A~i~i~~~~~~~~t~~~G~ 284 (305)
.|...+++.+|+|++|++|||+++|+..|++|+++|+.++++++.||+|+|+|.+|+||++|+|.|+|.. +++||.+|.
T Consensus 243 ~y~~~~~~e~t~e~~~~k~P~~~~l~~~w~~n~~all~~~~~~~~gI~G~V~d~~g~pi~~A~V~v~g~~-~~~T~~~G~ 321 (363)
T cd06245 243 SVDFGHCPEITVYTSCCLFPSASQLPDLWAENKKSLLSMIVEAHKGVHGVVTDKAGKPISGATIVLNGGH-RVYTKEGGY 321 (363)
T ss_pred hhhhcCCceeEEEeccccCCCHHHHHHHHHHHHHHHHHHHHHcCcEEEEEEEcCCCCCccceEEEEeCCC-ceEeCCCcE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999976 889999999
Q ss_pred EEEecCCceEEEEEEecCccC
Q psy17404 285 YWRLLAPGNYTLHVSAPGEDQ 305 (305)
Q Consensus 285 y~~~l~~G~y~l~vs~~Gy~~ 305 (305)
|++.|+||+|+|++|+.||++
T Consensus 322 y~~~L~pG~y~v~vs~~Gy~~ 342 (363)
T cd06245 322 FHVLLAPGQHNINVIAEGYQQ 342 (363)
T ss_pred EEEecCCceEEEEEEEeCcee
Confidence 988899999999999999974
No 6
>KOG2649|consensus
Probab=100.00 E-value=2.6e-71 Score=514.01 Aligned_cols=304 Identities=57% Similarity=1.036 Sum_probs=285.6
Q ss_pred CHHHHHHHHHhCCCcEEEEEeeeccCCceeeEEEEcCCCCCCCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcCCC
Q psy17404 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKID 80 (305)
Q Consensus 1 ~~~~l~~l~~~~p~~v~~~~iG~S~eGr~i~~~~i~~~~~~~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d 80 (305)
|+++|++++++||++.++.+||||+|||+||++.|++.|+.++..+|.+-++|+|||+|.+|.++++.+++.||.+|++|
T Consensus 75 m~~~l~~~~~~~p~itrlYSiGkSv~Gr~L~Vle~sd~PgeH~~gePEfKyv~nmHGnE~vGRElll~L~e~Lc~~y~~n 154 (500)
T KOG2649|consen 75 LEKALKDFTKRCPNITRLYSIGKSVEGRELWVIEISDRPGEHEPGEPEFKYIGNMHGNEVVGRELLLRLAEYLCDNYGKD 154 (500)
T ss_pred HHHHHHHHHhhCCcceeeeeccccccCceEEEEEcCCCCCcccCCCCcceeeeeccccccccHHHHHHHHHHHHHhcCCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhccceEEEEeccCchhHHHHHH----------------------------------------------------
Q psy17404 81 DRVTRMLQTTRIHLMPSMNPDGYERARE---------------------------------------------------- 108 (305)
Q Consensus 81 ~~~~~ll~~~~~~iiP~~NPDG~~~~~~---------------------------------------------------- 108 (305)
+.+++|+++++|+|+|.+|||||+...+
T Consensus 155 ~~i~~Lv~~trIHlmPSmNPDGyE~a~~~~~~~~~GR~Nang~DLNrnFPd~~~~~~~~~~~~~~n~~l~~~~~~~~~~~ 234 (500)
T KOG2649|consen 155 PRITQLVNNTRIHIMPSMNPDGYEIAKRGDRGWATGRNNANGVDLNRNFPDQFRLVYFIVTFDLLNSHLIMFNDDLNLRQ 234 (500)
T ss_pred hHHHHHHhhceEEEecccCcchhhhhhcccccceecccCccccchhccCcccccceeeeeeecccccccccccccccccC
Confidence 9999999999999999999999999866
Q ss_pred ----hhhhhhhccccccccceecccccceecCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhcCccCCCCCCCCCCCCCC
Q psy17404 109 ----AVEKWLQDIPFVLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLLASSYANAHKKMYKDPGCPEYPEENF 184 (305)
Q Consensus 109 ----~~~~~~k~~~~~~~~~~~g~dlnrnyp~~~~~~~~p~~~~~~pe~~~~~~l~~~y~~~h~~~~~~~~~~~~~~~~~ 184 (305)
+++.|.+..+|++++|+||+++..||||+-..... ..|+.+||...|+.||..|+..|..|+...+|........
T Consensus 235 pEt~Avm~W~~~~pFvLSAnLHGG~lvanYPfD~~~~~~-~~~s~tpDd~~F~~La~~YA~~h~~M~~~~~~~~~~~~~~ 313 (500)
T KOG2649|consen 235 PETIAVMKWLRDIPFVLSANLHGGALVANYPFDDTEDKR-KYYSASPDDATFRFLARIYAKSHRNMSLGKRCECDGNNGS 313 (500)
T ss_pred ccHHHHHHHHhhcceeeeccccCCceEEEccccCCcccc-cccCCCCCcHHHHHHHHHHHhhChhhhcCCCCcccccCCC
Confidence 67788888999999999999999999999765443 4567899999999999999999999997666654322222
Q ss_pred CCccccCceeeeccCccchhhhhhcceeEEEEEecCCCCCCCCCchhHHHhhhhhHHHHHhhhccceeeEEECcCCCCcc
Q psy17404 185 PGGIVNGAQWYVVSGGMQDYNYIHANTLEITLELGCYKFPPAKDLPSYWEDNLPALLSYIEQVHRGVAGFVKGREGEGVA 264 (305)
Q Consensus 185 ~~g~~~g~~~Y~~~G~~~Dw~y~~~~~~~~tiEl~~~~~pp~~~i~~~~~en~~~l~~~~~~~~~gi~G~v~d~~g~pi~ 264 (305)
..||+||+.||+..|+|+||.|.+.+|+.+||||+|++||++++|+..|++|+++|+.+++|++.||+|.|+|.+|+||+
T Consensus 314 ~~GItNGA~Wy~v~GgMqDfnYLhTNCfEiTiElgC~KfP~e~eLp~~WE~Nr~sLl~f~eqvH~GIkG~V~D~~G~~I~ 393 (500)
T KOG2649|consen 314 VGGITNGASWYPVYGGMQDWNYLHTNCFEITLELSCEKFPKESELPTLWEYNRKSLLNFVEQVHRGIKGLVFDDTGNPIA 393 (500)
T ss_pred cCceecCcceeecCCcccchhhhhcCeEEEEEEeccccCCchhhhHHHHHhhHHHHHHHHHHHHhccceeEEcCCCCccC
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEeeeeEeEeeCCCceEEEecCCceEEEEEEecCccC
Q psy17404 265 EASIAVEGLGHVVYSAQDGDYWRLLAPGNYTLHVSAPGEDQ 305 (305)
Q Consensus 265 ~A~i~i~~~~~~~~t~~~G~y~~~l~~G~y~l~vs~~Gy~~ 305 (305)
+|+|+|+|++++++|..+|+||+.|+||.|.|++++.||.+
T Consensus 394 NA~IsV~ginHdv~T~~~GDYWRLL~PG~y~vta~A~Gy~~ 434 (500)
T KOG2649|consen 394 NATISVDGINHDVTTAKEGDYWRLLPPGKYIITASAEGYDP 434 (500)
T ss_pred ceEEEEecCcCceeecCCCceEEeeCCcceEEEEecCCCcc
Confidence 99999999999999999999999999999999999999974
No 7
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=100.00 E-value=1e-70 Score=516.44 Aligned_cols=297 Identities=49% Similarity=0.870 Sum_probs=263.9
Q ss_pred CHHHHHHHHHhCCCcEEEEEeeeccCCceeeEEEEcCCCCCCCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcCCC
Q psy17404 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKID 80 (305)
Q Consensus 1 ~~~~l~~l~~~~p~~v~~~~iG~S~eGr~i~~~~i~~~~~~~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d 80 (305)
|.+||++|+++||+++++.+||+|+|||+|++++||+.+......||.|+++|+||||||+|++++++++++|+++|++|
T Consensus 11 i~~~l~~l~~~~p~i~~l~~IG~S~eGR~i~~l~ig~~~~~~~~~~P~v~~~~~iHg~E~ig~~~~l~l~~~L~~~y~~d 90 (376)
T cd03866 11 MEAYLKDVNKNYPSITHLHSIGQSVEGRELWVLVLGRFPREHRIGIPEFKYVANMHGNEVVGRELLLHLIDYLVTSYGSD 90 (376)
T ss_pred HHHHHHHHHHhCCCcEEEEEeeccCCCceEEEEEeccCCccccCCCCeEEEEcccCCCcHHHHHHHHHHHHHHHHhcCCC
Confidence 57899999999999999999999999999999999986554445799999999999999999999999999999999999
Q ss_pred hHHHHhhccceEEEEeccCchhHHHHHHhhhhhhhccccccccceecccccceecCCCCCCCC-----------------
Q psy17404 81 DRVTRMLQTTRIHLMPSMNPDGYERAREAVEKWLQDIPFVLSANLHGGSLVANYPYDDNQAMK----------------- 143 (305)
Q Consensus 81 ~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~~~~~k~~~~~~~~~~~g~dlnrnyp~~~~~~~~----------------- 143 (305)
+.++++|++++|+|+|++||||++++. ..+.|++.| .|+.|+|||||||+.|+....
T Consensus 91 ~~i~~lL~~~~i~ivP~~NPDG~e~~~-~~~~~~~~R-----~N~~GvDLNRnf~~~w~~~~~~sepEt~al~~~~~~~~ 164 (376)
T cd03866 91 PVITRLLNSTRIHIMPSMNPDGFEASK-PDCYYSVGR-----YNKNGYDLNRNFPDAFEENNEQRQPETRAVMEWLKSET 164 (376)
T ss_pred HHHHHHHhCCEEEEEeccCCchhhhcc-ccccccccc-----ccCCCcccCcCchhhhccCCCCCcHHHHHHHHHHHhcC
Confidence 999999999999999999999999974 345555443 457777788877777742210
Q ss_pred ----------------CCC-----------CCCCCcHHHHHHHHHHHHhhcCccCCCCCCCCCCCCCCCCccccCceeee
Q psy17404 144 ----------------PQV-----------DSPTPDDSIFKLLASSYANAHKKMYKDPGCPEYPEENFPGGIVNGAQWYV 196 (305)
Q Consensus 144 ----------------p~~-----------~~~~pe~~~~~~l~~~y~~~h~~~~~~~~~~~~~~~~~~~g~~~g~~~Y~ 196 (305)
|.. +...|+...|+.||+.|+..|..|+...+|.. +..|..|++||+.||+
T Consensus 165 ~~l~~~~H~~~~~~~YP~~~~~~~~~~~~~~~~~pd~~~~~~la~~~a~~~~~~~~g~~~~~--~~~~~~Gi~nga~~Y~ 242 (376)
T cd03866 165 FVLSANLHGGALVASYPYDNGNGGTGQQGYRSVSPDDDVFVHLAKTYSYNHANMYKGNHCSD--KQSFPSGITNGYQWYP 242 (376)
T ss_pred cEEEEEccCCceEEeccccCCCCccccccCCCCCCCHHHHHHHHHHHHHhCHHhhCCCCCCc--cccCCCCcccceEEEE
Confidence 211 23468999999999999999999987666764 4689999999999999
Q ss_pred ccCccchhhhhhcceeEEEEEecCCCCCCCCCchhHHHhhhhhHHHHHhhhccceeeEEECcCCCCccccEEEEeeeeE-
Q psy17404 197 VSGGMQDYNYIHANTLEITLELGCYKFPPAKDLPSYWEDNLPALLSYIEQVHRGVAGFVKGREGEGVAEASIAVEGLGH- 275 (305)
Q Consensus 197 ~~G~~~Dw~y~~~~~~~~tiEl~~~~~pp~~~i~~~~~en~~~l~~~~~~~~~gi~G~v~d~~g~pi~~A~i~i~~~~~- 275 (305)
++|+|+||+|..+++++||+||+|++|||+++|++.|++|+++|+.++++++.||+|+|+|.+|+||++|+|.|.|+..
T Consensus 243 ~sG~~~Dw~y~~~~~~~~T~El~~~k~p~~~~l~~~w~~n~~~ll~~i~q~~~gI~G~V~D~~g~pi~~A~V~v~g~~~~ 322 (376)
T cd03866 243 LQGGMQDYNYVWAQCFEITLELSCCKYPPEEQLPAFWEDNKAALIEYIKQVHLGVKGQVFDSNGNPIPNAIVEVKGRKHI 322 (376)
T ss_pred cCCCchhhhhhhCceEEEEEEecCCCCCCHHHHHHHHHHhHHHHHHHHHHhcCceEEEEECCCCCccCCeEEEEEcCCce
Confidence 9999999999889999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred -eEeeCCCceEEEecCCceEEEEEEecCccC
Q psy17404 276 -VVYSAQDGDYWRLLAPGNYTLHVSAPGEDQ 305 (305)
Q Consensus 276 -~~~t~~~G~y~~~l~~G~y~l~vs~~Gy~~ 305 (305)
.++||.+|.|++.|+||+|+|+||++||++
T Consensus 323 ~~~~T~~~G~y~~~l~pG~Y~v~vsa~Gy~~ 353 (376)
T cd03866 323 CPYRTNVNGEYFLLLLPGKYMINVTAPGFKT 353 (376)
T ss_pred eEEEECCCceEEEecCCeeEEEEEEeCCcce
Confidence 458999999988899999999999999974
No 8
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=100.00 E-value=6.3e-70 Score=512.94 Aligned_cols=298 Identities=50% Similarity=0.879 Sum_probs=262.1
Q ss_pred CHHHHHHHHHhCCCcEEEEEeeeccCCceeeEEEEcCCCCCCCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcCCC
Q psy17404 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKID 80 (305)
Q Consensus 1 ~~~~l~~l~~~~p~~v~~~~iG~S~eGr~i~~~~i~~~~~~~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d 80 (305)
|.++|++|+++||+++++.+||+|+|||+|++++||+.+......||.|+++|+||||||+|++++++|+++||++|..|
T Consensus 7 i~~~l~~l~~~~p~~~~l~~iG~S~eGR~i~~l~is~~~~~~~~~kp~v~~~~~iH~~E~ig~~~~l~l~~~L~~~y~~d 86 (372)
T cd03868 7 LTDLLHSLAKKYPNIARLHSIGRSVEGRELWVLRITDNVNRREPGEPMFKYVGNMHGDETVGRQVLIYLAQYLLENYGGD 86 (372)
T ss_pred HHHHHHHHHHHCCCcEEEEeccccCCCceEEEEEEecCCCCCCCCCCeEEEECCcCCCcHHHHHHHHHHHHHHHHhcccC
Confidence 57899999999999999999999999999999999986544445799999999999999999999999999999999899
Q ss_pred hHHHHhhccceEEEEeccCchhHHHHHHhh--hhhhhccccccccceecccccceecCCCCCCCC---------------
Q psy17404 81 DRVTRMLQTTRIHLMPSMNPDGYERAREAV--EKWLQDIPFVLSANLHGGSLVANYPYDDNQAMK--------------- 143 (305)
Q Consensus 81 ~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~--~~~~k~~~~~~~~~~~g~dlnrnyp~~~~~~~~--------------- 143 (305)
+.++++|++++|+|||++||||++++++.. +.|++.| .||.|+|||||||+.|+..+.
T Consensus 87 ~~~~~ll~~~~~~ivP~~NPDG~~~~~~~~~~~~~~~~R-----~n~~GvDLNRnf~~~~~~~~~~~~~sepEt~av~~~ 161 (372)
T cd03868 87 ERVTELVNTTDIYLMPSMNPDGFERSQEGDCSCGGYGGR-----ENANNVDLNRNFPDQFEGKLQRLSERQPETVAMMKW 161 (372)
T ss_pred HHHHHHHhCCEEEEEeeeCCchHHhhcccCccccCCCcc-----CCCCCccCCCCCCcccCCcCCCCCCCCHHHHHHHHH
Confidence 999999999999999999999999987654 4565544 489999999999999964321
Q ss_pred ---------------------CCCC----------CCCCcHHHHHHHHHHHHhhcCccCCCCCCCCCCCCCCCCccccCc
Q psy17404 144 ---------------------PQVD----------SPTPDDSIFKLLASSYANAHKKMYKDPGCPEYPEENFPGGIVNGA 192 (305)
Q Consensus 144 ---------------------p~~~----------~~~pe~~~~~~l~~~y~~~h~~~~~~~~~~~~~~~~~~~g~~~g~ 192 (305)
|..+ ..+|+.+.++.||+.|+..|..|....++. .+..|..|+++|+
T Consensus 162 ~~~~~~~l~~~lH~~~~~~~yP~~~~~~~~~~~~~~~~pd~~~~~~la~~~a~~~~~~~~~~~~~--~~~~~~~G~~~~~ 239 (372)
T cd03868 162 IRSNPFVLSGNLHGGSVVASYPYDDSSSHNECGVYSKSPDDAVFKYLALTYANNHPTMRTGKPCC--EGETFKDGITNGA 239 (372)
T ss_pred HhhCCcEEEEEccCccEEEeccccccCCCCCCcccCCCCCHHHHHHHHHHHHhhCHHhhCCCCCC--ccccCCCCcccCc
Confidence 2111 125667777777777777776665433221 2678999999999
Q ss_pred eeeeccCccchhhhhhcceeEEEEEecCCCCCCCCCchhHHHhhhhhHHHHHhhhccceeeEEECcCCCCccccEEEEee
Q psy17404 193 QWYVVSGGMQDYNYIHANTLEITLELGCYKFPPAKDLPSYWEDNLPALLSYIEQVHRGVAGFVKGREGEGVAEASIAVEG 272 (305)
Q Consensus 193 ~~Y~~~G~~~Dw~y~~~~~~~~tiEl~~~~~pp~~~i~~~~~en~~~l~~~~~~~~~gi~G~v~d~~g~pi~~A~i~i~~ 272 (305)
.||+++|+++||+|..+++++||+||+|++|||.++|++.|++|+++|+.++++++.+|+|+|+|++|+||++|+|.|++
T Consensus 240 ~~Y~~~G~~~Dw~y~~~~~~~~T~El~~~~~p~~~~l~~~w~~n~~al~~~~~~~~~~i~G~V~d~~g~pv~~A~V~v~~ 319 (372)
T cd03868 240 HWYDVPGGMQDYNYLHSNCFEITLELSCCKYPPASELPEEWNNNRESLLAYLEQVHIGVKGFVRDASGNPIEDATIMVAG 319 (372)
T ss_pred eeeeCCCCcchhhhhccCeeEEEEEecCCCCCCHHHHHHHHHHhHHHHHHHHHHhCCceEEEEEcCCCCcCCCcEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEeEeeCCCceEEEecCCceEEEEEEecCccC
Q psy17404 273 LGHVVYSAQDGDYWRLLAPGNYTLHVSAPGEDQ 305 (305)
Q Consensus 273 ~~~~~~t~~~G~y~~~l~~G~y~l~vs~~Gy~~ 305 (305)
+.+++.||.+|.|++.|+||+|+|+|++.||++
T Consensus 320 ~~~~~~td~~G~y~~~l~~G~Y~l~vs~~Gf~~ 352 (372)
T cd03868 320 IDHNVTTAKFGDYWRLLLPGTYTITAVAPGYEP 352 (372)
T ss_pred cccceEeCCCceEEecCCCEEEEEEEEecCCCc
Confidence 989999999999987899999999999999985
No 9
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPZ is a secreted Zn-dependent enzyme whose biological function is largely unknown. Unlike other members of the N/E subfamily, CPZ has a bipartite structure, which consists of an N-terminal cysteine-rich domain (CRD) whose sequence is similar to Wnt-binding proteins, and a C-terminal CP catalytic domain that removes C-terminal Arg residues from substrates. CPZ is enriched in the extracellular matrix and is widely distributed during early embryogenesis. That the CRD of CPZ can bind to Wnt4 suggests that CPZ plays a role in Wnt signaling.
Probab=100.00 E-value=1.5e-68 Score=505.63 Aligned_cols=297 Identities=47% Similarity=0.864 Sum_probs=265.4
Q ss_pred CHHHHHHHHHhCCCcEEEEEeeeccCCceeeEEEEcCCCCCCCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHc-CC
Q psy17404 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNY-KI 79 (305)
Q Consensus 1 ~~~~l~~l~~~~p~~v~~~~iG~S~eGr~i~~~~i~~~~~~~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y-~~ 79 (305)
|.+||++|+++||+++++.+||+|+|||+|++++|++++++....||+|+++|+||||||+|++++++|+++|+.+| ..
T Consensus 7 i~~~l~~la~~~p~~~~~~~iG~S~EGR~i~~l~is~~~~~~~~~kp~v~i~~giHg~E~ig~~~~~~l~~~L~~~~~~~ 86 (395)
T cd03867 7 MVSVLKRTAARCSHIARTYSIGRSFEGRDLLVIEFSSNPGQHELLEPEVKYIGNMHGNEVLGRELLIYLAQFLCSEYLLG 86 (395)
T ss_pred HHHHHHHHHHhCCCceEEEEccccCCCceEEEEEeccCCCcccccCCeEEEEccccCCcHHHHHHHHHHHHHHHHhhhcC
Confidence 57899999999999999999999999999999999986655445699999999999999999999999999999988 57
Q ss_pred ChHHHHhhccceEEEEeccCchhHHHHHHhh---hhhhhccccccccceecccccceecCCCCCC---------------
Q psy17404 80 DDRVTRMLQTTRIHLMPSMNPDGYERAREAV---EKWLQDIPFVLSANLHGGSLVANYPYDDNQA--------------- 141 (305)
Q Consensus 80 d~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~---~~~~k~~~~~~~~~~~g~dlnrnyp~~~~~~--------------- 141 (305)
|+.+++||++++|+|||++||||++++++.. +.|+|.| .||+|+|||||||+.|+..
T Consensus 87 d~~v~~ll~~~~i~ivP~~NPDG~e~~~~~~~~~~~wr~~R-----~n~~GvDLNRNf~~~~~~~~~~~~~~g~~~~~~p 161 (395)
T cd03867 87 NQRIQTLINTTRIHLLPSMNPDGYEAAASEGAGYNGWTNGR-----QNAQNIDLNRNFPDLTSEVYRRRRQRGARTDHIP 161 (395)
T ss_pred CHHHHHHhhCcEEEEEeccCCchHHhhhhcCccccccccCC-----cCCCCcccccCCCcchhhhcchhhcccccccCCC
Confidence 8999999999999999999999999987644 4688775 4699999999999877420
Q ss_pred ---------CC------------------------------CCCCC----------CCCcHHHHHHHHHHHHhhcCccCC
Q psy17404 142 ---------MK------------------------------PQVDS----------PTPDDSIFKLLASSYANAHKKMYK 172 (305)
Q Consensus 142 ---------~~------------------------------p~~~~----------~~pe~~~~~~l~~~y~~~h~~~~~ 172 (305)
.. |..+. .+|+...|+.||++|+..|..|+.
T Consensus 162 ~p~~~~~~~sepEt~Av~~~~~~~~~~l~~s~Hs~~~~~~yP~~~t~~~~~~~~~~~~~d~~~~~~lA~~~a~a~~~~~~ 241 (395)
T cd03867 162 IPDSYWFGKVAPETKAVMKWMRSIPFVLSASLHGGDLVVSYPYDFSRHPLEEKMFSPTPDEKVFKMLARTYADAHPTMSD 241 (395)
T ss_pred CccccccCccCHHHHHHHHHHhhCCceEEEEccCcceeEEcccccccCcccccccCCCCcHHHHHHHHHHHHHhCccccC
Confidence 01 32222 358899999999999999999976
Q ss_pred CCC--CCCCCCCC-CCCccccCceeeeccCccchhhhhhcceeEEEEEecCCCCCCCCCchhHHHhhhhhHHHHHhhhcc
Q psy17404 173 DPG--CPEYPEEN-FPGGIVNGAQWYVVSGGMQDYNYIHANTLEITLELGCYKFPPAKDLPSYWEDNLPALLSYIEQVHR 249 (305)
Q Consensus 173 ~~~--~~~~~~~~-~~~g~~~g~~~Y~~~G~~~Dw~y~~~~~~~~tiEl~~~~~pp~~~i~~~~~en~~~l~~~~~~~~~ 249 (305)
..+ |. +.. +..|+++|+.||+++|+++||+|..+++++||+||+|++|||+++|+++|+||+++++.++++++.
T Consensus 242 ~~~~~~~---~~~~~~g~i~~ga~~Y~~sG~~~Dw~y~~~~~~~~T~EL~~~~~pp~~~i~~~~~e~~~~l~~~~~~~~~ 318 (395)
T cd03867 242 RSTRRCG---GNFHKRGGIINGAEWYSFSGGMSDFNYLHTNCFEVTVELGCDKFPPEEELYTIWQENKEALLSFMEMVHR 318 (395)
T ss_pred CCCCCCc---cccccCCCceecceeeEcCCCcchhhhhccCceEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHhccc
Confidence 542 43 333 467888999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEECcCCCCccccEEEEeeeeEeEeeCCCceEEEecCCceEEEEEEecCccC
Q psy17404 250 GVAGFVKGREGEGVAEASIAVEGLGHVVYSAQDGDYWRLLAPGNYTLHVSAPGEDQ 305 (305)
Q Consensus 250 gi~G~v~d~~g~pi~~A~i~i~~~~~~~~t~~~G~y~~~l~~G~y~l~vs~~Gy~~ 305 (305)
+|+|+|+|++|+||++|+|.|+|++.+++||.+|.|++.|+||+|+|++++.||++
T Consensus 319 ~i~G~V~D~~g~pi~~A~V~v~g~~~~~~Td~~G~y~~~l~~G~y~l~vs~~Gy~~ 374 (395)
T cd03867 319 GIKGFVKDKDGNPIKGARISVRGIRHDITTAEDGDYWRLLPPGIHIVSAQAPGYTK 374 (395)
T ss_pred eeEEEEEcCCCCccCCeEEEEeccccceEECCCceEEEecCCCcEEEEEEecCeee
Confidence 99999999999999999999999999999999999998899999999999999974
No 10
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
Probab=100.00 E-value=2.6e-66 Score=489.62 Aligned_cols=300 Identities=57% Similarity=1.012 Sum_probs=260.9
Q ss_pred CHHHHHHHHHhCCCcEEEEEeeeccCCceeeEEEEcCCCCCCCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcC-C
Q psy17404 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYK-I 79 (305)
Q Consensus 1 ~~~~l~~l~~~~p~~v~~~~iG~S~eGr~i~~~~i~~~~~~~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~-~ 79 (305)
|.+||++|+++||+++++.+||+|+|||+|++++|++++......||.|+++|++|||||+|++++++|+++|+.+|. +
T Consensus 7 i~~~l~~l~~~~p~~~~~~~iG~S~eGR~i~~l~i~~~~~~~~~~kp~v~i~agiH~~E~~g~~~~~~l~~~L~~~~~~~ 86 (374)
T cd03858 7 LESFLKEVAANYPNITRLYSIGKSVQGRDLWVLEISDNPGVHEPGEPEFKYVGNMHGNEVVGRELLLRLAQYLCENYGAG 86 (374)
T ss_pred HHHHHHHHHHhCCCceEEEEcccCCCCCEEEEEEEecCCCCCCCCCceEEEeccccCCchhHHHHHHHHHHHHHHHhccC
Confidence 578999999999999999999999999999999999865443447999999999999999999999999999999986 8
Q ss_pred ChHHHHhhccceEEEEeccCchhHHHHHHhhhhhhhccccccccceecccccceecCCCCCCCCC-CCCCC---------
Q psy17404 80 DDRVTRMLQTTRIHLMPSMNPDGYERAREAVEKWLQDIPFVLSANLHGGSLVANYPYDDNQAMKP-QVDSP--------- 149 (305)
Q Consensus 80 d~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~~~~~k~~~~~~~~~~~g~dlnrnyp~~~~~~~~p-~~~~~--------- 149 (305)
|+.+++||++++|+|||++||||+++.++..+.|+++| .|+.|+|||||||+.|...+.+ ...++
T Consensus 87 d~~~~~ll~~~~~~ivP~~NPDG~~~~~~~~~~w~~~R-----~n~~GvDLNRnf~~~~~~~~~~G~~~~sepEt~al~~ 161 (374)
T cd03858 87 DPRITRLVDNTRIHIMPSMNPDGYEKAAEGDCGGLTGR-----YNANGVDLNRNFPDLFFTNYRSSDNGPRQPETKAVMN 161 (374)
T ss_pred CHHHHHHHhCCEEEEEcccCCchhhhhcccCCcccccC-----CCCcceecccCCCcccccccccCCCcccCHHHHHHHH
Confidence 99999999999999999999999999988888998876 3679999999999998643210 01123
Q ss_pred -------------------------------------CCcHHHHHHHHHHHHhhcCccCCCCCCCCCCCCCCCCccccCc
Q psy17404 150 -------------------------------------TPDDSIFKLLASSYANAHKKMYKDPGCPEYPEENFPGGIVNGA 192 (305)
Q Consensus 150 -------------------------------------~pe~~~~~~l~~~y~~~h~~~~~~~~~~~~~~~~~~~g~~~g~ 192 (305)
+||...++.|++.|+..|..|+..++|.......|..|+++++
T Consensus 162 ~~~~~~~~~~i~~Hs~~~~~~yp~~~~~~~~~~~~~~~~d~~~~~~la~~~a~~~~~~~~~~~~~~~~~~~y~~G~~~~~ 241 (374)
T cd03858 162 WIKSIPFVLSANLHGGALVANYPYDDSPSGKRTAYSATPDDELFRYLAKTYADAHPTMHKGGPCCCNDDEEFPGGITNGA 241 (374)
T ss_pred HHhhCCceEEEEccCCceEEEcccccCCCccccCCCCCCCHHHHHHHHHHHHHhCHHhcCCCCCCCcccccCCCCcEEcc
Confidence 3555566666666666665555444332211246888998899
Q ss_pred eeeeccCccchhhhhhcceeEEEEEecCCCCCCCCCchhHHHhhhhhHHHHHhhhccceeeEEECcCCCCccccEEEEee
Q psy17404 193 QWYVVSGGMQDYNYIHANTLEITLELGCYKFPPAKDLPSYWEDNLPALLSYIEQVHRGVAGFVKGREGEGVAEASIAVEG 272 (305)
Q Consensus 193 ~~Y~~~G~~~Dw~y~~~~~~~~tiEl~~~~~pp~~~i~~~~~en~~~l~~~~~~~~~gi~G~v~d~~g~pi~~A~i~i~~ 272 (305)
.||+++|+++||+|..+++++||+||+|+++||+++|+++|++|+++++.++++++.+|+|+|+|++|+|+++|+|.|+|
T Consensus 242 ~~Y~~~G~~~Dw~y~~~~~~~~t~El~~~~~p~~~~i~~i~~en~~all~l~~~a~~~i~G~V~d~~g~pl~~A~V~i~~ 321 (374)
T cd03858 242 AWYSVTGGMQDWNYLHTNCFEITLELSCCKFPPASELPKYWEENREALLAYIEQVHRGIKGFVRDANGNPIANATISVEG 321 (374)
T ss_pred eeeEcCCCchhhhhhccCceEEEEeccCCCCCChhHhHHHHHHHHHHHHHHHhhcCCceEEEEECCCCCccCCeEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEeEeeCCCceEEEecCCceEEEEEEecCccC
Q psy17404 273 LGHVVYSAQDGDYWRLLAPGNYTLHVSAPGEDQ 305 (305)
Q Consensus 273 ~~~~~~t~~~G~y~~~l~~G~y~l~vs~~Gy~~ 305 (305)
....+.||.+|.|.+.|++|+|+|+||+.||++
T Consensus 322 ~~~~~~Td~~G~f~~~l~~G~y~l~vs~~Gy~~ 354 (374)
T cd03858 322 INHDVTTAEDGDYWRLLLPGTYNVTASAPGYEP 354 (374)
T ss_pred ceeeeEECCCceEEEecCCEeEEEEEEEcCcce
Confidence 999999999999988899999999999999974
No 11
>KOG2650|consensus
Probab=100.00 E-value=2.3e-55 Score=411.26 Aligned_cols=242 Identities=22% Similarity=0.330 Sum_probs=208.3
Q ss_pred CHHHHHHHHHhCCCcEEEEEeeeccCCceeeEEEEcCCCCCCCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcCCC
Q psy17404 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKID 80 (305)
Q Consensus 1 ~~~~l~~l~~~~p~~v~~~~iG~S~eGr~i~~~~i~~~~~~~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d 80 (305)
|++||++|+++||++|++..||+|+|||+|.+++|+.+. ...||+|||+||+||||||++++++++|++|+..|++|
T Consensus 127 I~~~l~~l~~~~P~~v~~~~IG~s~EgR~i~~lkIs~~~---~~~k~~I~id~GiHAREWIspAta~~~i~qLv~~y~~~ 203 (418)
T KOG2650|consen 127 IYEWLDNLAERYPDLVSLIHIGRSYEGRPLKVLKISGGD---NRNKKAIFIDAGIHAREWISPATALWFINQLVSSYGRD 203 (418)
T ss_pred HHHHHHHHHHhCCCceEEEEcccccCCceEEEEEecCCC---CCCCceEEEecchhHHhhccHHHHHHHHHHHHhhhccC
Confidence 578999999999999999999999999999999999842 23699999999999999999999999999999999999
Q ss_pred hHHHHhhccceEEEEeccCchhHHHHHHhhhhhhhcccccc-ccceecccccceecCCCCC-CC---CCC--C-----CC
Q psy17404 81 DRVTRMLQTTRIHLMPSMNPDGYERAREAVEKWLQDIPFVL-SANLHGGSLVANYPYDDNQ-AM---KPQ--V-----DS 148 (305)
Q Consensus 81 ~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~~~~~k~~~~~~-~~~~~g~dlnrnyp~~~~~-~~---~p~--~-----~~ 148 (305)
+.++++|++++|+|+|++|||||+|+++.+|.|||+|.+.. ...|.|+|+||||+|+|+. .| +|| . .+
T Consensus 204 ~~~~~ll~~~dwyI~Pv~NPDGYeYS~t~~R~WRKnRs~~~~~~~C~GvDlNRNfd~~W~~~~Gas~~PCse~Y~G~~pf 283 (418)
T KOG2650|consen 204 PAVTKLLDKLDWYILPVVNPDGYEYSRTTDRLWRKNRSPNGCASRCIGVDLNRNFDFHWGGGKGASSDPCSETYAGPSPF 283 (418)
T ss_pred HHHHHHHhcCcEEEEeeecCCcceeeecccccccccCCCCCCCCeeeCCCCCCCccCcCCCCCCCCCCCCccccCCCCCC
Confidence 99999999999999999999999999999999999998764 3569999999999999987 23 463 2 37
Q ss_pred CCCcHHHHHHHHHHH-------HhhcCc----cCCCCCC----CC-----------------CCCCCCCCccccCceeee
Q psy17404 149 PTPDDSIFKLLASSY-------ANAHKK----MYKDPGC----PE-----------------YPEENFPGGIVNGAQWYV 196 (305)
Q Consensus 149 ~~pe~~~~~~l~~~y-------~~~h~~----~~~~~~~----~~-----------------~~~~~~~~g~~~g~~~Y~ 196 (305)
||||+++++++...+ -++|.. +|++|-+ ++ ..|..|..|.+ +..+|+
T Consensus 284 SEpEt~av~~fi~~~~~~i~~yislHSYsQ~llyPyg~~~~~~~~~~dl~~va~~a~~ai~~~~gt~Y~~G~~-~~~~y~ 362 (418)
T KOG2650|consen 284 SEPETRAVRDFITSFENNIKAYISLHSYSQLLLYPYGYTNDLPEDYEDLQEVARAAADALKSVYGTKYTVGSS-ADTLYP 362 (418)
T ss_pred CcHHHHHHHHHHHhcCcceEEEEEecccceeEEecccccCCCCCCHHHHHHHHHHHHHHHHHHhCCEEEeccc-cceeec
Confidence 999999999887643 335642 4666632 11 03566766744 357899
Q ss_pred ccCccchhhhh-hcceeEEEEEecCC---CC-CCCCCchhHHHhhhhhHHHHHhh
Q psy17404 197 VSGGMQDYNYI-HANTLEITLELGCY---KF-PPAKDLPSYWEDNLPALLSYIEQ 246 (305)
Q Consensus 197 ~~G~~~Dw~y~-~~~~~~~tiEl~~~---~~-pp~~~i~~~~~en~~~l~~~~~~ 246 (305)
++|++.||+|+ .+++++||+||++. || ||+++|.|+++|.+.++..++++
T Consensus 363 asG~S~Dway~~~gi~~~ft~ELrd~g~~GF~LP~~~I~pt~~Et~~~i~~i~~~ 417 (418)
T KOG2650|consen 363 ASGGSDDWAYDVLGIPYAFTFELRDTGRYGFLLPASQIIPTAKETWAGIKAIAEK 417 (418)
T ss_pred cCCchHHHhhhccCCCEEEEEEeccCCCCCccCChHHhhhhHHHHHHHHHHHHhh
Confidence 99999999998 89999999999964 57 99999999999999999999875
No 12
>cd06247 M14_CPO Peptidase M14 carboxypeptidase (CP) O (CPO, also known as metallocarboxypeptidase C; EC 3.4.17.) belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPO has not been well characterized as yet, and little is known about it. Based on modeling studies, CPO has been suggested to have specificity for acidic residues rather than aliphatic/aromatic residues as in A-like enzymes or basic residues as in B-like enzymes. It remains to be demonstrated that CPO is functional as an MCP.
Probab=100.00 E-value=1.6e-53 Score=388.03 Aligned_cols=242 Identities=17% Similarity=0.217 Sum_probs=206.3
Q ss_pred CHHHHHHHHHhCCCcEEEEEeeeccCCceeeEEEEcCCCCCCCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcCCC
Q psy17404 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKID 80 (305)
Q Consensus 1 ~~~~l~~l~~~~p~~v~~~~iG~S~eGr~i~~~~i~~~~~~~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d 80 (305)
|++||++|+++||+++++.+||+|+|||+|++|+|++... ..||.||++|++|||||+|++++++++++|+.+|+.|
T Consensus 10 i~~~l~~L~~~~p~~v~l~~iG~S~EgR~I~~l~i~~~~~---~~k~~i~i~~giHarEwi~~~~~l~~i~~Ll~~y~~d 86 (298)
T cd06247 10 IYNWMDQIKEKYSELVSQHYLGCTYELRPMYYLKIGWPSD---KPKKIIWMDCGIHAREWISPAFCQWFVKEILQNYKTD 86 (298)
T ss_pred HHHHHHHHHHHCCCcEEEEeceECcCCceEEEEEeecCCC---CCCcEEEEeccccccccccHHHHHHHHHHHHHHhccC
Confidence 5789999999999999999999999999999999997422 3589999999999999999999999999999999889
Q ss_pred hHHHHhhccceEEEEeccCchhHHHHHHhhhhhhhccccccccceecccccceecCCCCCCC---CCC-------CCCCC
Q psy17404 81 DRVTRMLQTTRIHLMPSMNPDGYERAREAVEKWLQDIPFVLSANLHGGSLVANYPYDDNQAM---KPQ-------VDSPT 150 (305)
Q Consensus 81 ~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~~~~~k~~~~~~~~~~~g~dlnrnyp~~~~~~~---~p~-------~~~~~ 150 (305)
+.+++||++++|+|||++|||||+++++..|.|||||.+....+|.||||||||+++|+..+ .|+ ..+||
T Consensus 87 ~~~~~ll~~~~i~ivP~~NPDGy~ys~~~~r~wRknr~~~~~~~c~GVDLNRNf~~~w~~~g~s~~p~~~~y~G~~pfSE 166 (298)
T cd06247 87 PILRKVLKNVDFYVLPVLNIDGYIYTWTTDRLWRKNRSPHNNGTCYGVDLNRNFNSQWCSIGASRNCRSNIFCGTGPESE 166 (298)
T ss_pred HHHHHHHhcCeEEEEeeecCCcceEEecccceecccCCCCCCCCccccccccCCCCccccCCCCCCCCCCCcCCCCCCCc
Confidence 99999999999999999999999999988999999998776778999999999999997543 232 23699
Q ss_pred CcHHHHHHHHHHH-------HhhcC----ccCCCCC----CCCC-----------------CCCCCCCccccCceeeecc
Q psy17404 151 PDDSIFKLLASSY-------ANAHK----KMYKDPG----CPEY-----------------PEENFPGGIVNGAQWYVVS 198 (305)
Q Consensus 151 pe~~~~~~l~~~y-------~~~h~----~~~~~~~----~~~~-----------------~~~~~~~g~~~g~~~Y~~~ 198 (305)
||+++++++...+ .+.|. .+|.++. .++. .+..|..|... ..+|+++
T Consensus 167 pEt~ai~~~~~~~~~~i~~~l~~Hsyg~~i~~P~g~~~~~~~n~~~~~~~a~~~~~ai~~~~~~~y~~g~~~-~~~y~a~ 245 (298)
T cd06247 167 PETKAVARLIESKKSDILCYLTIHSYGQLILLPYGYTKEPSSNHEEMMLVAQKAAAALKEKHGTEYRVGSSA-LILYSNS 245 (298)
T ss_pred HHHHHHHHHHHhcCcceEEEEEeccCCCeEEeCCcCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCccCCcc-cccccCC
Confidence 9999999988754 23453 2355542 1110 24556666653 4689999
Q ss_pred CccchhhhhhcceeEEEEEecCC---CC-CCCCCchhHHHhhhhhHHHHHhh
Q psy17404 199 GGMQDYNYIHANTLEITLELGCY---KF-PPAKDLPSYWEDNLPALLSYIEQ 246 (305)
Q Consensus 199 G~~~Dw~y~~~~~~~~tiEl~~~---~~-pp~~~i~~~~~en~~~l~~~~~~ 246 (305)
|++.||+|..+++++||+||++. +| ||+++|.|+++|+|.++..++++
T Consensus 246 G~s~Dwa~~~~~~~s~t~El~~~g~~gF~lp~~~I~p~~~E~~~~i~~~~~~ 297 (298)
T cd06247 246 GSSRDWAVDIGIPFSYTFELRDNGTYGFVLPEDQIQPTCEETMTAVMSMVEY 297 (298)
T ss_pred CChhhhhhccCCCEEEEEEeCCCCCCCCCCChHHCcchhHHHHHHHHHHHhh
Confidence 99999999999999999999974 57 99999999999999999998865
No 13
>cd03872 M14_CPA6 Carboxypeptidase (CP) A6 (CPA6, also known as CPAH; EC 3.4.17.1), belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPA6 prefers large hydrophobic C-terminal amino acids as well as histidine, while peptides with a penultimate glycine or proline are very poorly cleaved. Several neuropeptides are processed by CPA6, including Met- and Leu-enkephalin, angiotensin I, and neurotensin. CPA6 converts enkephalin and neurotensin into forms known to be inactive toward their receptors, but converts inactive angiotensin I into the biologically active angiotensin II. Thus, CPA6 plays a possible role in the regulation of neuropeptides in the extracellular environment within the olfactory bulb where it is highly expresse
Probab=100.00 E-value=2.1e-53 Score=387.18 Aligned_cols=244 Identities=18% Similarity=0.255 Sum_probs=207.5
Q ss_pred CHHHHHHHHHhCCCcEEEEEeeeccCCceeeEEEEcCCCCCCCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcCCC
Q psy17404 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKID 80 (305)
Q Consensus 1 ~~~~l~~l~~~~p~~v~~~~iG~S~eGr~i~~~~i~~~~~~~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d 80 (305)
|++||++|+++||+++++.+||+|+|||+|++++|++... ..||.|||+||+|||||+|++++++++++|+.+|+.|
T Consensus 8 i~~~l~~L~~~~p~~v~l~~iG~S~EGR~i~~l~i~~~~~---~~k~~i~i~~giHarEwi~~~~~~~~i~~Ll~~~~~d 84 (300)
T cd03872 8 IESWMFYMNKTHSDLVHLFSIGKSYEGRSLYVLKLGKRTR---SYKKAVWIDCGIHAREWIGPAFCQWFVKEALNSYQTD 84 (300)
T ss_pred HHHHHHHHHHHCCCceEEEEeeecCCCCceEEEEEecCCC---CCCCeEEEecccccccccCHHHHHHHHHHHHHhccCC
Confidence 5789999999999999999999999999999999997432 3699999999999999999999999999999999889
Q ss_pred hHHHHhhccceEEEEeccCchhHHHHHHhhhhhhhccccccccceecccccceecCCCCCCC---CCC--C-----CCCC
Q psy17404 81 DRVTRMLQTTRIHLMPSMNPDGYERAREAVEKWLQDIPFVLSANLHGGSLVANYPYDDNQAM---KPQ--V-----DSPT 150 (305)
Q Consensus 81 ~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~~~~~k~~~~~~~~~~~g~dlnrnyp~~~~~~~---~p~--~-----~~~~ 150 (305)
+.++++|++++|+|||++|||||+++++..|.|||+|+.....+|.||||||||++.|+..+ .|+ . .+||
T Consensus 85 ~~~~~lL~~~~~~ivP~vNPDGy~ys~~~~r~wrknR~~~~~~~c~GVDLNRNf~~~w~~~g~s~~Pcs~~Y~G~~pfSE 164 (300)
T cd03872 85 PAMKKMLNQLYFYVMPVFNVDGYHYSWTNDRFWRKTRSKNSRYQCRGVDANRNWKVKWCDEGASLHPCDDTYCGPFPESE 164 (300)
T ss_pred hHHHHHHhhCeEEEEeeecCCcceeeeccchhhhccCCCCCCCCccccccccccCcccCCCCCCCCCCCCCCCCCCCCCc
Confidence 99999999999999999999999999999999999998777789999999999999997543 342 2 3699
Q ss_pred CcHHHHHHHHHHH-------HhhcCc----cCCCCC-C---CCC-----------------CCCCCCCccccCceeeecc
Q psy17404 151 PDDSIFKLLASSY-------ANAHKK----MYKDPG-C---PEY-----------------PEENFPGGIVNGAQWYVVS 198 (305)
Q Consensus 151 pe~~~~~~l~~~y-------~~~h~~----~~~~~~-~---~~~-----------------~~~~~~~g~~~g~~~Y~~~ 198 (305)
||+++++++...+ .++|.. +|+++- + ++. .+..|..|... ..+|+++
T Consensus 165 pEt~al~~~~~~~~~~i~~~ls~Hsyg~~i~~P~g~~~~~~~~~~~~~~~~~~~~~ai~~~~~~~Y~~g~~~-~~lY~a~ 243 (300)
T cd03872 165 PEVKAVAQFLRKHRKHVRAYLSFHAYAQMLLYPYSYKYATIPNFGCVESAAYNAVNALQSAYGVRYRYGPAS-STLYVSS 243 (300)
T ss_pred HHHHHHHHHHHhCCccceEEEEEccCCcEEEecCCCcCCCCCChHHHHHHHHHHHHHHHHhhCCCCcccCcc-cceecCC
Confidence 9999998887653 235632 344441 1 110 23456655543 3679999
Q ss_pred CccchhhhhhcceeEEEEEecCC---CC-CCCCCchhHHHhhhhhHHHHHhhhc
Q psy17404 199 GGMQDYNYIHANTLEITLELGCY---KF-PPAKDLPSYWEDNLPALLSYIEQVH 248 (305)
Q Consensus 199 G~~~Dw~y~~~~~~~~tiEl~~~---~~-pp~~~i~~~~~en~~~l~~~~~~~~ 248 (305)
|++.||+|..+++++||+||++. +| ||+++|.|+++|++.++..++.++.
T Consensus 244 G~s~Dw~y~~~i~~s~t~EL~~~g~~gF~lp~~~I~p~~~E~~~~i~~~~~~~~ 297 (300)
T cd03872 244 GSSMDWAYKNGIPYAFAFELRDTGYYGFLLPEGLIKPTCTETMLAVKNITMHLL 297 (300)
T ss_pred CCHHHHhhcCCCcEEEEEEeCCCCCCCCcCCHHHCCcccHHHHHHHHHHHHHHH
Confidence 99999999989999999999985 57 9999999999999999999988764
No 14
>cd03870 M14_CPA Peptidase M14 Carboxypeptidase (CP) A (CPA) belongs to the A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPA enzymes generally favor hydrophobic residues. A/B subfamily enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The procarboxypeptidase A (PCPA) is produced by the exocrine pancreas and stored as a stable zymogen in the pancreatic granules until secretion into the digestive tract occurs. This subfamily includes CPA1, CPA2 and CPA4 forms. Within these A forms, there are slightly different specificities, with CPA1 preferring aliphatic and small aromatic residues, and CPA2 p
Probab=100.00 E-value=5.4e-53 Score=385.69 Aligned_cols=243 Identities=21% Similarity=0.281 Sum_probs=207.2
Q ss_pred CHHHHHHHHHhCCCcEEEEEeeeccCCceeeEEEEcCCCCCCCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcCCC
Q psy17404 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKID 80 (305)
Q Consensus 1 ~~~~l~~l~~~~p~~v~~~~iG~S~eGr~i~~~~i~~~~~~~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d 80 (305)
|.+||++|+++||+++++.+||+|+|||+|++++|++++. .||+||++||+|||||+|++++++++++|+.+|++|
T Consensus 12 i~~~l~~L~~~~p~~v~~~~iG~S~eGR~I~~l~is~~~~----~kp~v~i~~giHarE~i~~~~~l~~~~~L~~~~~~d 87 (301)
T cd03870 12 IYDFMDLLVAEHPNLVSKLQIGRSYEGRPIYVLKFSTGGS----NRPAIWIDAGIHSREWITQATGVWFAKKITEDYGQD 87 (301)
T ss_pred HHHHHHHHHHHCCCceEEEecccCCCCCeEEEEEEecCCC----CCceEEEeccccccchhhHHHHHHHHHHHHHhcccC
Confidence 5789999999999999999999999999999999997532 699999999999999999999999999999999889
Q ss_pred hHHHHhhccceEEEEeccCchhHHHHHHhhhhhhhccccccccceecccccceecCCCCCCC---CCC-------CCCCC
Q psy17404 81 DRVTRMLQTTRIHLMPSMNPDGYERAREAVEKWLQDIPFVLSANLHGGSLVANYPYDDNQAM---KPQ-------VDSPT 150 (305)
Q Consensus 81 ~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~~~~~k~~~~~~~~~~~g~dlnrnyp~~~~~~~---~p~-------~~~~~ 150 (305)
+.++++|++++|+|||++|||||+++++..+.|||+|......+|+|||||||||+.|+..+ .|+ ..+||
T Consensus 88 ~~~~~lLd~~~i~ivP~~NPDG~~~s~~~~r~wrknr~~~~~~~~~GVDLNRNf~~~w~~~g~s~~p~~~~Y~G~~pfSE 167 (301)
T cd03870 88 PSFTAILDSMDIFLEIVTNPDGYVFTHSQNRLWRKTRSVTSGSLCVGVDPNRNWDAGFGGAGASSNPCSETYHGPYANSE 167 (301)
T ss_pred HHHHHHHHhCcEEEEeeecCchhhheecccceeecCCCCCCCCCccccccccCCCcccCcCCCCCCCCccccCCCCCCcc
Confidence 99999999999999999999999999988899999998777788999999999999997543 342 23699
Q ss_pred CcHHHHHHHHHHH------HhhcCc----cCCCCC-C---CC-----------------CCCCCCCCccccCceeeeccC
Q psy17404 151 PDDSIFKLLASSY------ANAHKK----MYKDPG-C---PE-----------------YPEENFPGGIVNGAQWYVVSG 199 (305)
Q Consensus 151 pe~~~~~~l~~~y------~~~h~~----~~~~~~-~---~~-----------------~~~~~~~~g~~~g~~~Y~~~G 199 (305)
||+++++++.... .+.|.. +|.++- + ++ ..+..|..|... ..+|+++|
T Consensus 168 pEt~av~~~~~~~~~~~~~l~lHS~g~~i~yP~~~~~~~~~~~~~~~~la~~~~~ai~~~~g~~y~~g~~~-~~~y~a~G 246 (301)
T cd03870 168 VEVKSIVDFVKSHGNFKAFISIHSYSQLLLYPYGYTTQSIPDKTELNQVAKSAVAALKSLYGTSYKYGSII-TTIYQASG 246 (301)
T ss_pred HHHHHHHHHHhhCCCeEEEEEeccCCceEEecCcCCCCCCCCHHHHHHHHHHHHHHHHHhcCCcccccccc-ceeecCCC
Confidence 9999999887643 234532 344431 1 11 024556666543 36899999
Q ss_pred ccchhhhhhcceeEEEEEecCC---CC-CCCCCchhHHHhhhhhHHHHHhhhc
Q psy17404 200 GMQDYNYIHANTLEITLELGCY---KF-PPAKDLPSYWEDNLPALLSYIEQVH 248 (305)
Q Consensus 200 ~~~Dw~y~~~~~~~~tiEl~~~---~~-pp~~~i~~~~~en~~~l~~~~~~~~ 248 (305)
++.||+|..+++++|||||+++ +| ||+++|.++++|.+.++..+++++.
T Consensus 247 ~s~Dw~y~~~~~~s~t~El~~~g~~gF~lP~~~i~p~~~E~~~~i~~~~~~~~ 299 (301)
T cd03870 247 GSIDWSYNQGIKYSFTFELRDTGRYGFLLPASQIIPTAQETWLGLLTIMEHTR 299 (301)
T ss_pred ChhhhhhcCCCcEEEEEEeCCCCCCCCCCChHHCchhhHHHHHHHHHHHHHHh
Confidence 9999999999999999999984 56 9999999999999999999988764
No 15
>cd03871 M14_CPB Peptidase M14 Carboxypeptidase B (CPB) belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Carboxypeptidase B (CPB) enzymes only cleave the basic residues lysine or arginine. A/B subfamily enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The procarboxypeptidase B (PCPB) is produced by the exocrine pancreas and stored as stable zymogen in the pancreatic granules until secretion into the digestive tract occurs. PCPB has been reported to be a good serum marker for the diagnosis of acute pancreatitis and graft rejection in pancreas transplant recipients.
Probab=100.00 E-value=2.5e-53 Score=387.44 Aligned_cols=242 Identities=16% Similarity=0.232 Sum_probs=205.3
Q ss_pred CHHHHHHHHHhCCCcEEEEEeeeccCCceeeEEEEcCCCCCCCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcCCC
Q psy17404 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKID 80 (305)
Q Consensus 1 ~~~~l~~l~~~~p~~v~~~~iG~S~eGr~i~~~~i~~~~~~~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d 80 (305)
|++||++|+++||+++++.+||+|+|||+|++++|++.. ..||+||++|++|||||++++++++++++|+.+|++|
T Consensus 12 i~~~l~~la~~~p~~v~~~~IG~S~eGR~i~~l~i~~~~----~~kp~v~i~~giHarE~i~~~~~l~~i~~l~~~y~~d 87 (300)
T cd03871 12 IEAWTEQVASENPDLISRSQIGTTFEGRPIYLLKVGKPG----VNKPAIFMDCGFHAREWISPAFCQWFVREAVRTYGRE 87 (300)
T ss_pred HHHHHHHHHHHCCCceEEEEeeeCCCCCeeEEEEEccCC----CCCCeEEEeccccccccccHHHHHHHHHHHHHHccCC
Confidence 578999999999999999999999999999999999842 3699999999999999999999999999999999999
Q ss_pred hHHHHhhccceEEEEeccCchhHHHHHHhhhhhhhccccccccceecccccceecCCCCCCC---CCC-------CCCCC
Q psy17404 81 DRVTRMLQTTRIHLMPSMNPDGYERAREAVEKWLQDIPFVLSANLHGGSLVANYPYDDNQAM---KPQ-------VDSPT 150 (305)
Q Consensus 81 ~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~~~~~k~~~~~~~~~~~g~dlnrnyp~~~~~~~---~p~-------~~~~~ 150 (305)
+.+++||++++|+|||++|||||+++++..+.|||+|+.....+|.|||||||||+.|+..+ .|+ ..+||
T Consensus 88 ~~~~~lL~~~~~~ivP~~NPDG~~~s~~~~r~wrknr~~~~~~~c~GVDLNRNf~~~w~~~g~s~~pc~~~Y~G~~p~SE 167 (300)
T cd03871 88 AIMTELLDKLDFYVLPVLNIDGYIYTWTKNRMWRKTRSTNAGSSCIGTDPNRNFNAGWCTVGASRNPCDETYCGSAPESE 167 (300)
T ss_pred HHHHHHHHcCeEEEEEeecCCcCeeeeccCHHHHHhcCCCCCCCccccccCcCCCCccCCCCCCCCCCCCCcCCCCCCCC
Confidence 99999999999999999999999999988999999998776778999999999999997543 342 23699
Q ss_pred CcHHHHHHHHHHHH-------hhcCc----cCCCCC----CCC-----------------CCCCCCCCccccCceeeecc
Q psy17404 151 PDDSIFKLLASSYA-------NAHKK----MYKDPG----CPE-----------------YPEENFPGGIVNGAQWYVVS 198 (305)
Q Consensus 151 pe~~~~~~l~~~y~-------~~h~~----~~~~~~----~~~-----------------~~~~~~~~g~~~g~~~Y~~~ 198 (305)
||+++++++...+. ++|.. +|+++- .++ ..+..|..|.. +..+|+++
T Consensus 168 pEt~Al~~~~~~~~~~~~~~l~~HSyg~~i~~Py~~~~~~~~~~~~~~~la~~~~~ai~~~~g~~y~~g~~-~~~~Y~a~ 246 (300)
T cd03871 168 KETKALADFIRNNLSSIKAYLTIHSYSQMLLYPYSYTYKLPENHAELNSVAKGAVKELASLYGTKYTYGPG-ATTIYPAA 246 (300)
T ss_pred HHHHHHHHHHHhcCcceeEEEEeccCccEEEecCcCCCCCCCCHHHHHHHHHHHHHHHHHhhCCCCcCCcc-ccccccCC
Confidence 99999998876542 35532 344431 111 02344555543 45789999
Q ss_pred CccchhhhhhcceeEEEEEecCC---CC-CCCCCchhHHHhhhhhHHHHHhhh
Q psy17404 199 GGMQDYNYIHANTLEITLELGCY---KF-PPAKDLPSYWEDNLPALLSYIEQV 247 (305)
Q Consensus 199 G~~~Dw~y~~~~~~~~tiEl~~~---~~-pp~~~i~~~~~en~~~l~~~~~~~ 247 (305)
|++.||+|..+++++||+||++. +| ||+++|.++++|.+.++..+++++
T Consensus 247 G~s~Dw~y~~~~~~s~t~El~~~g~~gf~lp~~~I~~~~~E~~~~i~~~~~~~ 299 (300)
T cd03871 247 GGSDDWAYDQGIKYSFTFELRDKGRYGFLLPESQIKPTCEETMLAVKYIANYV 299 (300)
T ss_pred CCHHHHHhcCCCcEEEEEEeCCCCCCCCCCCHHHCccccHHHHHHHHHHHHhh
Confidence 99999999999999999999874 57 899999999999999999988654
No 16
>cd06246 M14_CPB2 Peptidase M14 Carboxypeptidase (CP) B2 (CPB2, also known as plasma carboxypeptidase B, carboxypeptidase U, and CPU), belongs to the carboxpeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPB2 enzyme displays B-like activity; it only cleaves the basic residues lysine or arginine. It is produced and secreted by the liver as the inactive precursor, procarboxypeptidase U or PCPB2, commonly referred to as thrombin-activatable fibrinolysis inhibitor (TAFI). It circulates in plasma as a zymogen bound to plasminogen, and the active enzyme, TAFIa, inhibits fibrinolysis. It is highly regulated, increased TAFI concentrations are thought to increase the risk of thrombosis and coronary artery disease by reducing fibrinolytic activity whil
Probab=100.00 E-value=7.8e-53 Score=384.75 Aligned_cols=243 Identities=20% Similarity=0.291 Sum_probs=204.8
Q ss_pred CHHHHHHHHHhCCCcEEEEEeeeccCCceeeEEEEcCCCCCCCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcCCC
Q psy17404 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKID 80 (305)
Q Consensus 1 ~~~~l~~l~~~~p~~v~~~~iG~S~eGr~i~~~~i~~~~~~~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d 80 (305)
|.+||++|+++||+++++.+||+|+|||+|++++|++.+. ..||+|||+||+|||||+|++++++++++|++.|+.|
T Consensus 11 i~~~l~~l~~~~p~~v~~~~iG~S~egR~I~~l~is~~~~---~~k~~v~i~~giHarE~i~~~~~l~~i~~Ll~~~~~d 87 (300)
T cd06246 11 IYSWIEFITERHSDMLEKIHIGSSFEKRPLYVLKVSGKEQ---TAKNAIWIDCGIHAREWISPAFCLWFVGHATQFYGID 87 (300)
T ss_pred HHHHHHHHHHHCCCcEEEEecccCCCCCeEEEEEEeCCCC---CCCCeEEEecccCccchhhHHHHHHHHHHHHHHhcCC
Confidence 5789999999999999999999999999999999997432 3699999999999999999999999999999999889
Q ss_pred hHHHHhhccceEEEEeccCchhHHHHHHhhhhhhhccccccccceecccccceecCCCCCCC---CC--CC-----CCCC
Q psy17404 81 DRVTRMLQTTRIHLMPSMNPDGYERAREAVEKWLQDIPFVLSANLHGGSLVANYPYDDNQAM---KP--QV-----DSPT 150 (305)
Q Consensus 81 ~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~~~~~k~~~~~~~~~~~g~dlnrnyp~~~~~~~---~p--~~-----~~~~ 150 (305)
+.++++|++++|+|||++|||||+++++..+.|||||.+....+|.|||||||||+.|+..+ .| .. .+||
T Consensus 88 ~~~~~lL~~~~i~ivP~~NPDG~~~~~~~~r~wRknr~~~~~~~~~GVDLNRNf~~~w~~~g~s~~p~~~~y~G~~p~SE 167 (300)
T cd06246 88 GQMTNLLRHMDFYIMPVMNVDGYDYTWKKNRMWRKNRSFYANSHCIGTDLNRNFDAKWCCEGASSSSCSETYCGPYPESE 167 (300)
T ss_pred HHHHHHHHhCeEEEEEeecCCceeEEEeccceeecCCCCCCCCCccCcccccccccccCCCCCCCCCCCCCcCCCCCCcc
Confidence 99999999999999999999999999888899999998777778999999999999997543 34 22 3699
Q ss_pred CcHHHHHHHHHHHH-------hhcCc----cCCCCC----CCCC-----------------CCCCCCCccccCceeeecc
Q psy17404 151 PDDSIFKLLASSYA-------NAHKK----MYKDPG----CPEY-----------------PEENFPGGIVNGAQWYVVS 198 (305)
Q Consensus 151 pe~~~~~~l~~~y~-------~~h~~----~~~~~~----~~~~-----------------~~~~~~~g~~~g~~~Y~~~ 198 (305)
||++++.++..... +.|.. +|.++- ..+. .+..|..|... ..+|+++
T Consensus 168 pEt~av~~~~~~~~~~i~~~is~Hs~g~~i~~P~~~~~~~~~~~~~~~~la~~~~~ai~~~~~~~y~~g~~~-~~~Y~a~ 246 (300)
T cd06246 168 PEVKAVASFLRRHINQIKAYISMHSYSQMILFPYSYTRSKSKDHEELSLLAKEAVRAIRRTSNNRYTHGSGA-ETIYLAP 246 (300)
T ss_pred HHHHHHHHHHHhCCcceeEEEEeccCCcEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhhCCCCeecCCC-CeeeccC
Confidence 99999998876532 35532 344431 1110 13445444432 3689999
Q ss_pred CccchhhhhhcceeEEEEEecCC---CC-CCCCCchhHHHhhhhhHHHHHhhh
Q psy17404 199 GGMQDYNYIHANTLEITLELGCY---KF-PPAKDLPSYWEDNLPALLSYIEQV 247 (305)
Q Consensus 199 G~~~Dw~y~~~~~~~~tiEl~~~---~~-pp~~~i~~~~~en~~~l~~~~~~~ 247 (305)
|++.||+|..+++++||+||+++ +| ||+++|.|+++|+++++..+++++
T Consensus 247 G~s~Dw~y~~~~~~s~t~El~~~g~~gF~lp~~~I~p~~~E~~~~~~~~~~~~ 299 (300)
T cd06246 247 GGSDDWAYDLGIKYSFTFELRDTGTYGFLLPESYIKPTCSEALAAVKKIAWHV 299 (300)
T ss_pred CChhhHhhcCCCCEEEEEEecCCCCCCCCCCHHHcccccHHHHHHHHHHHHhh
Confidence 99999999999999999999985 67 999999999999999999998764
No 17
>cd06248 M14_CPA_CPB_like Peptidase M14 Carboxypeptidase A/B-like subfamily: This is one of two main M14 carboxypeptidase subfamilies, defined by sequence and structural homology, the other being N/E. Carboxypeptidases (CPs) hydrolyze single, C-terminal amino acids from polypeptide chains. They have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Majority of the proteins in this subfamily have not been characterized as yet. The A/B enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; the proenzymes are called procarboxypeptidases. These enzymes exhibit distinct substrate specificity pattern; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. There are nine members in the A/B family: CPA1, CPA2, CPA3, CPA4, CPA5,
Probab=100.00 E-value=9.3e-50 Score=365.84 Aligned_cols=244 Identities=22% Similarity=0.343 Sum_probs=203.6
Q ss_pred CHHHHHHHHHhCCCcEEEEEeeeccCCceeeEEEEcCCCCCCCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcCCC
Q psy17404 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKID 80 (305)
Q Consensus 1 ~~~~l~~l~~~~p~~v~~~~iG~S~eGr~i~~~~i~~~~~~~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d 80 (305)
|.+||++|+++||+++++.+||+|+|||+|++++|++... ....||+|+++|++|||||+|++++++++++|+++|..|
T Consensus 10 i~~~l~~la~~~p~~v~~~~iG~S~eGR~i~~l~I~~~~~-~~~~k~~v~i~~giHarE~~~~~~~l~~~~~L~~~~~~d 88 (304)
T cd06248 10 HLQWLRDLQAAFPNNSELFTIGKSYEGRTILGLHIWGSGG-EKGSKPAIVIHGTVHAREWISTMTVEYLAYQLLTGYGSD 88 (304)
T ss_pred HHHHHHHHHHHCCCceEEeceEECCCCCeEEEEEEecCCC-CCCCCcEEEEECCcCcCccccHHHHHHHHHHHHHhhccC
Confidence 5789999999999999999999999999999999997532 123699999999999999999999999999999999889
Q ss_pred hHHHHhhccceEEEEeccCchhHHHHHHhhhhhhhccccccccceecccccceecCCCCCCC---CCC--C-----CCCC
Q psy17404 81 DRVTRMLQTTRIHLMPSMNPDGYERAREAVEKWLQDIPFVLSANLHGGSLVANYPYDDNQAM---KPQ--V-----DSPT 150 (305)
Q Consensus 81 ~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~~~~~k~~~~~~~~~~~g~dlnrnyp~~~~~~~---~p~--~-----~~~~ 150 (305)
+.++++|++++|+|||++||||++++++..+.|||+|+.....+|.|||||||||+.|+..+ .|+ . .++|
T Consensus 89 ~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~wRknr~~~~~~~~~GVDLNRNf~~~w~~~g~s~~p~s~~Y~G~~~~sE 168 (304)
T cd06248 89 ATVTALLDKFDFYIIPVVNPDGFVYTQTSDRLWRKNRQPTSGSSCVGTDLNRNWPYKWDGGGSSTNPCSETYRGESPGDA 168 (304)
T ss_pred HHHHHHHHhCcEEEEeeecCchhhhhccchhhhhhcCCCCCCCCceeecCCCCCCCcccCCCCCCCCCCCCcCCCCCCcc
Confidence 99999999999999999999999999988899999998766678999999999999997533 342 2 3699
Q ss_pred CcHHHHHHHHHHHH---------hhcCc----cCCCCC-C----CCC-----------------CCCCCCCccccCceee
Q psy17404 151 PDDSIFKLLASSYA---------NAHKK----MYKDPG-C----PEY-----------------PEENFPGGIVNGAQWY 195 (305)
Q Consensus 151 pe~~~~~~l~~~y~---------~~h~~----~~~~~~-~----~~~-----------------~~~~~~~g~~~g~~~Y 195 (305)
||+++++++...+. ++|.. +|.++- + ++. .+..|..|... ..+|
T Consensus 169 pEt~av~~~~~~~~~~~~~~~~l~~Hs~~~~i~~P~~~~~~~~~~d~~~~~~la~~~a~ai~~~~g~~y~~g~~~-~~~y 247 (304)
T cd06248 169 PEAKALAAFLNKLAEGQGIVGYIDWHSYSQLILYPYGYSCDAVPPNLENLEELAAGLAKAIRAVSGTTYTVGPAC-NTLY 247 (304)
T ss_pred HHHHHHHHHHHhccccCceEEEEEeccCcceEEecCcCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCcccccc-cccc
Confidence 99999998877643 34532 243331 1 110 24456655543 4689
Q ss_pred eccCccchhhhhh-cceeEEEEEecCC---CC-CCCCCchhHHHhhhhhHHHHHhh
Q psy17404 196 VVSGGMQDYNYIH-ANTLEITLELGCY---KF-PPAKDLPSYWEDNLPALLSYIEQ 246 (305)
Q Consensus 196 ~~~G~~~Dw~y~~-~~~~~~tiEl~~~---~~-pp~~~i~~~~~en~~~l~~~~~~ 246 (305)
+++|++.||+|.. +++++||+||++. +| ||+++|.|+++|+|.++..++..
T Consensus 248 ~~~G~~~D~~y~~~gi~~~~t~El~~~~~~gf~~p~~~i~p~~~e~~~~~~~~~~~ 303 (304)
T cd06248 248 QTTGSSVDWVYHVAGAAWSYQLELRDTGTYGFVLPAKQIIPTGEETWAGIKYLLKF 303 (304)
T ss_pred cCCCCcchhhhccCCCcEEEEEEeCCCCCCCCCCCHHHCcchhHHHHHHHHHHHhh
Confidence 9999999999986 5599999999873 57 89999999999999999998764
No 18
>cd03859 M14_CPT Peptidase M14-like domain of carboxypeptidase (CP) T (CPT), CPT belongs to the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPT has moderate similarity to CPA and CPB, and exhibits dual-substrate specificity by cleaving C-terminal hydrophobic amino acid residues like CPA and C-terminal positively charged residues like CPB. CPA and CPB are M14 family peptidases but do not belong to this CPT group. The substrate specificity difference between CPT and CPA and CPB is ascribed to a few amino acid substitutions at the substrate-binding pocket while the spatial organization of the binding site remains the same as in all Zn-CPs. CPT has increased thermal stability in presence of Ca2+ ions, and two disulfide bridges which give an additional stabilization factor.
Probab=100.00 E-value=8.9e-49 Score=358.69 Aligned_cols=237 Identities=25% Similarity=0.440 Sum_probs=195.4
Q ss_pred CHHHHHHHHHhCCCcEEEEEeeeccCCceeeEEEEcCCCCCCCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcCCC
Q psy17404 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKID 80 (305)
Q Consensus 1 ~~~~l~~l~~~~p~~v~~~~iG~S~eGr~i~~~~i~~~~~~~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d 80 (305)
|.++|++|+++||+++++.+||+|++||+|++++|++++. ....||+|+|+|++|||||+|++++++++++|+++|..|
T Consensus 10 i~~~l~~l~~~~p~~v~~~~iG~S~eGR~i~~l~i~~~~~-~~~~kp~i~i~~~iH~~E~~g~~~~l~~i~~L~~~~~~d 88 (295)
T cd03859 10 MVDELNAAAAAYPNLTKVKSIGKSYEGRDIIAVKISDNVA-TDENKPEVLYTSTHHAREWLSLEMAIYLMHYLLENYGKD 88 (295)
T ss_pred HHHHHHHHHHHCCCceEEEeeeecCCCCeEEEEEEecCCC-CCCCCCEEEEECCcCccchhhHHHHHHHHHHHHHhhccC
Confidence 5789999999999999999999999999999999998643 234699999999999999999999999999999999889
Q ss_pred hHHHHhhccceEEEEeccCchhHHHHHH--hhhhhhhccccccc--cceecccccceecCCCCCC--C---CC--C----
Q psy17404 81 DRVTRMLQTTRIHLMPSMNPDGYERARE--AVEKWLQDIPFVLS--ANLHGGSLVANYPYDDNQA--M---KP--Q---- 145 (305)
Q Consensus 81 ~~~~~ll~~~~~~iiP~~NPDG~~~~~~--~~~~~~k~~~~~~~--~~~~g~dlnrnyp~~~~~~--~---~p--~---- 145 (305)
+.++++|++++|+|||++||||+++.++ ..+.||||++.... .+|.|||||||||+.|+.. + .| .
T Consensus 89 ~~~~~lL~~~~i~ivP~~NPDG~~~~~~~~~~~~wrkn~~~~~~~~~~~~GvDLNRNf~~~w~~~~~g~s~~p~~~~y~G 168 (295)
T cd03859 89 PRIQNLVDNRELWFVPVVNPDGYEYDETTGGYRSWRKNRRDNSGDISSSDGVDLNRNYGYKWGYDSGGSSNDPSSETYRG 168 (295)
T ss_pred HHHHHHHhcCeEEEEeeeCCCcceEEeeccCccceeccCCCCCCCcCcceeecCCCCCCcccCCCCCCCCCCCCCCCccC
Confidence 9999999999999999999999999987 68899999876443 6899999999999999752 2 23 1
Q ss_pred -CCCCCCcHHHHHHHHHHHH------hhcCc----cCCCCCC-------CCC-----CC------CCCCCccccCceeee
Q psy17404 146 -VDSPTPDDSIFKLLASSYA------NAHKK----MYKDPGC-------PEY-----PE------ENFPGGIVNGAQWYV 196 (305)
Q Consensus 146 -~~~~~pe~~~~~~l~~~y~------~~h~~----~~~~~~~-------~~~-----~~------~~~~~g~~~g~~~Y~ 196 (305)
..++|||+++++++...+. ++|.. +|.++.+ .+. .+ ..|..|.. ..+|+
T Consensus 169 ~~p~sepEt~av~~~~~~~~~~~~~l~~Hs~g~~i~~P~~~~~~~~~~~~d~~~~~~la~~~~~~~~y~~~~~--~~~Y~ 246 (295)
T cd03859 169 PSAFSEPETQAIRDFVESHKNIKTALNYHTYSNLWLYPYGYQYNEPMPSKDEIDFVALGGTMAESNGYTPKVS--SDLYT 246 (295)
T ss_pred CCCCchHHHHHHHHHHHhCCCeEEEEEeecCCceEEeCCcCCCCCCCCCccHHHHHHHHHHHHHHhCCcccCc--ceeEe
Confidence 2368999999999887662 24532 2444421 110 00 12333332 46899
Q ss_pred ccCccchhhhhhcceeEEEEEecCC----CC-CCCCCchhHHHhhhhhH
Q psy17404 197 VSGGMQDYNYIHANTLEITLELGCY----KF-PPAKDLPSYWEDNLPAL 240 (305)
Q Consensus 197 ~~G~~~Dw~y~~~~~~~~tiEl~~~----~~-pp~~~i~~~~~en~~~l 240 (305)
++|+++||+|...++++||+||++. +| ||.++|.++|+||++++
T Consensus 247 ~~G~~~Dw~y~~~~~~~~t~El~~~~~~~gf~~p~~~i~~~~~~~~~~~ 295 (295)
T cd03859 247 ANGDADDWMYGRHKIISLTPEMGPESGGTGFYPPDEEISRETSRNYPAL 295 (295)
T ss_pred cCCchHHHHhhCCCcEEEEEEeCCCCCCCCCcCCHHHHHHHHHhccCCC
Confidence 9999999999988889999999983 45 99999999999999874
No 19
>cd03860 M14_CP_A-B_like The Peptidase M14 Carboxypeptidase (CP) A/B subfamily is one of two main M14 CP subfamilies defined by sequence and structural homology, the other being the N/E subfamily. CPs hydrolyze single, C-terminal amino acids from polypeptide chains. They have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. There are nine members in the A/B family: CPA1, CPA2, CPA3, CPA4, CPA5, CPA6, CPB, CPO and CPU. CPA1, CPA2 and CPB are produced by the
Probab=100.00 E-value=2.4e-46 Score=342.76 Aligned_cols=240 Identities=23% Similarity=0.358 Sum_probs=198.9
Q ss_pred CHHHHHHHHHhCCCcEEEEEeeeccCCceeeEEEEcCCCCCCCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcCCC
Q psy17404 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKID 80 (305)
Q Consensus 1 ~~~~l~~l~~~~p~~v~~~~iG~S~eGr~i~~~~i~~~~~~~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d 80 (305)
|.++|++|+++||+++++.+||+|+|||+|++++|++.+ ...||+|+|+|++|||||+|++++++++++|+.++ +
T Consensus 7 i~~~l~~l~~~~p~~~~~~~iG~S~egr~i~~l~i~~~~---~~~k~~v~i~~~~Hg~E~~g~~~~~~~~~~L~~~~--~ 81 (294)
T cd03860 7 IYAWLDELAQKYPDLVTVETIGRSYEGRPIKGVKISNGG---RSNKPAIFIDAGIHAREWISPATALYIINQLVESY--D 81 (294)
T ss_pred HHHHHHHHHHHCCCceEEEeeeeCCCCCeEEEEEEecCC---CCCCcEEEEECCcCcCccccHHHHHHHHHHHHHcc--C
Confidence 578999999999999999999999999999999999853 23699999999999999999999999999999975 3
Q ss_pred hHHHHhhccceEEEEeccCchhHHHHHHhhhhhhhccccccccceecccccceecCCCCCCC---CC--CC-----CCCC
Q psy17404 81 DRVTRMLQTTRIHLMPSMNPDGYERAREAVEKWLQDIPFVLSANLHGGSLVANYPYDDNQAM---KP--QV-----DSPT 150 (305)
Q Consensus 81 ~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~~~~~k~~~~~~~~~~~g~dlnrnyp~~~~~~~---~p--~~-----~~~~ 150 (305)
+.++++|++++|+|||++||||++++++..+.|+|+|......++.|+|||||||+.|+..+ .| .. .+++
T Consensus 82 ~~~~~ll~~~~i~iiP~~NPDG~~~~~~~~~~wrknr~~~~~~~~~GvDLNRnf~~~w~~~~~~~~p~~~~y~G~~~~se 161 (294)
T cd03860 82 PEVTDLLDNYDWYILPVANPDGYEYTHTTDRLWRKNRSPNSGGGCVGVDLNRNFDYHWGGGGASSDPCSETYAGPSAFSE 161 (294)
T ss_pred HHHHHHHHcCeEEEEeeecCCchhhhccccchhcccCCCCCCCCceeeccCCCCCCCCccCCCCCCCCCCCccCCCCCch
Confidence 78999999999999999999999999888899999987666678999999999999997532 23 12 2689
Q ss_pred CcHHHHHHHHHHHH-------hhcCc----cCCCCCC----CCC-----------------CCCCCCCccccCceeeecc
Q psy17404 151 PDDSIFKLLASSYA-------NAHKK----MYKDPGC----PEY-----------------PEENFPGGIVNGAQWYVVS 198 (305)
Q Consensus 151 pe~~~~~~l~~~y~-------~~h~~----~~~~~~~----~~~-----------------~~~~~~~g~~~g~~~Y~~~ 198 (305)
||+++++++...+. ++|.. +|.++.+ .+. .+..|..|... ..+|+++
T Consensus 162 pEt~al~~~~~~~~~~~~~~ld~Hs~~~~i~~P~~~~~~~~~d~~~~~~la~~~~~~~~~~~g~~Y~~g~~~-~~~y~~~ 240 (294)
T cd03860 162 PETRAVRDFLLSLRGRIKAYLSLHSYGQLILYPWGYTSELPPNYEDLREVAKAAADAIRAVYGTRYTVGSSA-ETLYPAS 240 (294)
T ss_pred HHHHHHHHHHHhccccEEEEEEeccCCceEEcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCcccccc-CccccCC
Confidence 99999999887763 34532 2333321 110 12345544432 4689999
Q ss_pred Cccchhhhhhc-ceeEEEEEecCC---CC-CCCCCchhHHHhhhhhHHHHHhh
Q psy17404 199 GGMQDYNYIHA-NTLEITLELGCY---KF-PPAKDLPSYWEDNLPALLSYIEQ 246 (305)
Q Consensus 199 G~~~Dw~y~~~-~~~~~tiEl~~~---~~-pp~~~i~~~~~en~~~l~~~~~~ 246 (305)
|++.||+|... ++++||+||++. +| ||+++|.++++|++++++.++..
T Consensus 241 G~~~Dw~y~~~~~~~~~t~El~~~~~~gf~~p~~~i~~~~~e~~~~~~~~~~~ 293 (294)
T cd03860 241 GGSDDWAYGVAGIPYSYTLELRDTGRYGFLLPASQIIPTAEETFAGIKAMADE 293 (294)
T ss_pred CchhhhhhccCCCcEEEEEEecCCCCCCCcCChHHchhHHHHHHHHHHHHHhh
Confidence 99999999865 679999999985 67 99999999999999999998764
No 20
>cd06226 M14_CPT_like Peptidase M14-like domain of an uncharacterized group of Peptidase M14 Carboxypeptidase (CP) T (CPT)-like proteins. This group belongs to the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPT exhibits dual-substrate specificity by cleaving C-terminal hydrophobic amino acid residues and C-terminal positively charged residues. However, CPT does not belong to this CPT-like group.
Probab=100.00 E-value=1.7e-46 Score=341.13 Aligned_cols=231 Identities=24% Similarity=0.339 Sum_probs=183.5
Q ss_pred CCCcEEEEEeeecc------CCceeeEEEEcCCCCC-CCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcCCChHHH
Q psy17404 12 YPNLTRLYSVGQSV------EKRELWVLELSTHPGV-HKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKIDDRVT 84 (305)
Q Consensus 12 ~p~~v~~~~iG~S~------eGr~i~~~~i~~~~~~-~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d~~~~ 84 (305)
||+++++.+||+|+ +||+|++|+|++.... ....||+|||+|+||||||+|++++|+++++|+++|..|+.++
T Consensus 1 ~p~~~~~~~iG~S~~~~~~~eGR~I~~l~ig~~~~~~~~~~kp~v~i~~~iHarE~ig~~~~l~~i~~L~~~~~~d~~v~ 80 (293)
T cd06226 1 YPNLAQWVDIGDSWDKPGGPAGYDIRALKLTNKATNSPTGPKPVFFIMGAIHAREYTTAELVLRFAEDLLEGYGTDADAT 80 (293)
T ss_pred CCcceEEEEeeEecccCcccCCceEEEEEEecCCCCcCCCCCCEEEEECCcCCCcHHHHHHHHHHHHHHHHhcccCHHHH
Confidence 79999999999999 9999999999985431 2347999999999999999999999999999999998899999
Q ss_pred HhhccceEEEEeccCchhHHHHHHhhhhhhhccccc----cccceecccccceecCCCCCC----CCCC--C-----CCC
Q psy17404 85 RMLQTTRIHLMPSMNPDGYERAREAVEKWLQDIPFV----LSANLHGGSLVANYPYDDNQA----MKPQ--V-----DSP 149 (305)
Q Consensus 85 ~ll~~~~~~iiP~~NPDG~~~~~~~~~~~~k~~~~~----~~~~~~g~dlnrnyp~~~~~~----~~p~--~-----~~~ 149 (305)
+||++++|+|||++|||||+++++ .+.||||++.. +..++.|||||||||+.|+.. +.|+ . .+|
T Consensus 81 ~lL~~~~i~ivP~~NPDG~~~~~~-~~~wRkNr~~~~~~~~~~n~~GVDLNRNf~~~w~~~~~~~~~p~~~~y~G~~p~S 159 (293)
T cd06226 81 WLLDYHEIHVVPIVNPDGRKIAEQ-GLSQRKNANTSGGSNCSGSSYGVDLNRNYSFGWGGAGASSGDPCSETYRGPAPGS 159 (293)
T ss_pred HHHhcCeEEEEecccCCcceeecc-CcceeccCCCCCCCCccccccccccccCCCCcCCcCCCCCCCCCCCCcCCCCCCC
Confidence 999999999999999999999875 67899998642 566789999999999999743 2342 2 369
Q ss_pred CCcHHHHHHHHHHHH---------------------hhcCc----cCCCCC----CCCC-----CCCCCC--Ccc--ccC
Q psy17404 150 TPDDSIFKLLASSYA---------------------NAHKK----MYKDPG----CPEY-----PEENFP--GGI--VNG 191 (305)
Q Consensus 150 ~pe~~~~~~l~~~y~---------------------~~h~~----~~~~~~----~~~~-----~~~~~~--~g~--~~g 191 (305)
|||+++++++...+. +.|.. +|.++- +++. .+..+. .|. .+.
T Consensus 160 EpEt~Av~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~HS~g~~i~~P~g~~~~~~p~~~~~~~la~~~~~~~gy~~~~~ 239 (293)
T cd06226 160 EPETAALEDYIRGLFPDQRGPGDTDPAPDDTTGVYLDIHSYSNLVLYPWGWTTQPAPNDTQLRALGRKFASFNGYTPQQS 239 (293)
T ss_pred cHHHHHHHHHHHhccccccccccccccccccceEEEEeccCCCeEeecCcCCCCCCCCHHHHHHHHHHHhhcCCcccccc
Confidence 999999998876543 23432 233331 1110 111111 111 223
Q ss_pred ceeeeccCccchhhhhhcceeEEEEEecCCCCCCCCCc-hhHHHhhhhhHHHH
Q psy17404 192 AQWYVVSGGMQDYNYIHANTLEITLELGCYKFPPAKDL-PSYWEDNLPALLSY 243 (305)
Q Consensus 192 ~~~Y~~~G~~~Dw~y~~~~~~~~tiEl~~~~~pp~~~i-~~~~~en~~~l~~~ 243 (305)
..+|+++|+++||+|...++++||+||++++|++.+++ +.+|.||+++|+..
T Consensus 240 ~~~Y~~~G~~~Dw~y~~~gi~s~TiElg~~~~~~~~~~~~~~~~~n~~~~~~~ 292 (293)
T cd06226 240 VGLYPTDGTTDDWSYGELGVAAYTFEIGTSFFQSCSSFESGILPDNRPALYYA 292 (293)
T ss_pred ceEEecCCChhHhHhhcCCceEEEEEccCCCCCCcccccccccccCHHHHhhc
Confidence 46899999999999988777899999999999777655 78999999998753
No 21
>cd06228 Peptidase_M14-like_3 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=100.00 E-value=2.4e-44 Score=329.66 Aligned_cols=216 Identities=16% Similarity=0.237 Sum_probs=171.7
Q ss_pred EeeeccCCceeeEEEEcCCCCCCCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcC------------CChHHHHhh
Q psy17404 20 SVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYK------------IDDRVTRML 87 (305)
Q Consensus 20 ~iG~S~eGr~i~~~~i~~~~~~~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~------------~d~~~~~ll 87 (305)
.-++|+|||+|++|+|+++.. ..||+|||+|++|||||++++++++++++|+.+|. .|+++++||
T Consensus 5 ~~~~S~EgR~I~~l~I~~~~~---~~kp~V~i~ggiHAREwis~~~~l~~i~~Ll~~y~~~~~~~yg~~~~~d~~v~~lL 81 (332)
T cd06228 5 LPHKTYEGRTPHGAKIGAGTL---TSRYGALFIGGVHARERGSPDNLIYFVSDLLNARKAGRGIKYGGRTYTAADVKAIL 81 (332)
T ss_pred CCCCCCCCCeeEEEEEeCCCC---CCCCEEEEEccccccchhhHHHHHHHHHHHHHhhhccccccccccccccHHHHHHH
Confidence 347999999999999998532 36999999999999999999999999999999873 478899999
Q ss_pred ccceEEEEeccCchhHHHHHHhhhhhhhccccccc---cceecccccceecCCCCCC-------------CCCC--C---
Q psy17404 88 QTTRIHLMPSMNPDGYERAREAVEKWLQDIPFVLS---ANLHGGSLVANYPYDDNQA-------------MKPQ--V--- 146 (305)
Q Consensus 88 ~~~~~~iiP~~NPDG~~~~~~~~~~~~k~~~~~~~---~~~~g~dlnrnyp~~~~~~-------------~~p~--~--- 146 (305)
+ ++|+|||++|||||+++++..+.|||||+.... .+|.||||||||++.|+.. ..|+ .
T Consensus 82 ~-~~i~IvP~vNPDGy~~s~~~~r~WRKNr~~~~~~~~~~c~GVDLNRNf~~~W~~~~~~~~~~~~~g~S~~Pcse~Y~G 160 (332)
T cd06228 82 D-AGIVVFPLVNPDGRAHDQTANSCWRKNRNPASAGPNPSSVGVDINRNFDFLWDFQKYFDPGASRSVASTDPASETFHG 160 (332)
T ss_pred h-CeEEEEEeecCcchhheeccchhhhccCCCCcccccCcccccccCCCCCCCcCcccccccccccCCCCCCCCccccCC
Confidence 9 999999999999999999889999999976433 4899999999999999731 2342 2
Q ss_pred --CCCCCcHHHHHHHHHHHH------hhcC----ccCCCCC-CC-----------------------------------C
Q psy17404 147 --DSPTPDDSIFKLLASSYA------NAHK----KMYKDPG-CP-----------------------------------E 178 (305)
Q Consensus 147 --~~~~pe~~~~~~l~~~y~------~~h~----~~~~~~~-~~-----------------------------------~ 178 (305)
.+||||+++++.+..... ++|. .+|.++- +. +
T Consensus 161 ~~pfSEPET~av~~~~~~~~~~~~yls~HSygq~il~P~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (332)
T cd06228 161 TAAFSEPETRNVVWVMDTFKNIRWFVDLHSYGGDVLYSWGDDENQSTNPAMNFMNPAYDGKRGIVAAPDTRYGEYIDSDD 240 (332)
T ss_pred CCCCccHHHHHHHHHHhccCCeEEEEEeccCCceEEecccCCccccccccccccccccccccccccccccccccccCCCC
Confidence 379999999998876542 2452 2333331 10 0
Q ss_pred C-----------------CCCCCCCccccCceeeeccCccchhhhhh-------cceeEEEEEecCC------CC-CCCC
Q psy17404 179 Y-----------------PEENFPGGIVNGAQWYVVSGGMQDYNYIH-------ANTLEITLELGCY------KF-PPAK 227 (305)
Q Consensus 179 ~-----------------~~~~~~~g~~~g~~~Y~~~G~~~Dw~y~~-------~~~~~~tiEl~~~------~~-pp~~ 227 (305)
. .|..|..|.. ..+|+++|++.||+|.. +++++||+||++. +| ||++
T Consensus 241 ~~~l~~~a~~~~~ai~~~~g~~Y~~g~~--~~lY~~sG~s~D~ay~~~~~~~~~~~~~s~t~El~~~~~~~~~gF~~p~~ 318 (332)
T cd06228 241 WDAAVNLAARMGLAMAAARGRIYTVSQS--VGLYPTSGASDDYAFSRHFADAVKRKVFSYTIEFGETNSEAECPFYPTYS 318 (332)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCceeCCc--ccccCCCCChhhhhhhccccccccCceEEEEEEeCCCCCCCCcCCCCCHH
Confidence 0 1233444433 25899999999999974 5789999999863 67 9999
Q ss_pred CchhHHHhhhhhHH
Q psy17404 228 DLPSYWEDNLPALL 241 (305)
Q Consensus 228 ~i~~~~~en~~~l~ 241 (305)
+|.++.+|.+.+++
T Consensus 319 ~i~~~~~E~~~g~~ 332 (332)
T cd06228 319 EYNQIIKEVAAGLM 332 (332)
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999998763
No 22
>PF00246 Peptidase_M14: Zinc carboxypeptidase This is family M14 in the peptidase classification. ; InterPro: IPR000834 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of sequences contain a diverse range of gene families, which include metallopeptidases belonging to MEROPS peptidase family M14 (carboxypeptidase A, clan MC), subfamilies M14A and M14B. The carboxypeptidase A family can be divided into two subfamilies: carboxypeptidase H (regulatory) and carboxypeptidase A (digestive) []. Members of the H family have longer C-termini than those of family A [], and carboxypeptidase M (a member of the H family) is bound to the membrane by a glycosylphosphatidylinositol anchor, unlike the majority of the M14 family, which are soluble []. The zinc ligands have been determined as two histidines and a glutamate, and the catalytic residue has been identified as a C-terminal glutamate, but these do not form the characteristic metalloprotease HEXXH motif [, ]. Members of the carboxypeptidase A family are synthesised as inactive molecules with propeptides that must be cleaved to activate the enzyme. Structural studies of carboxypeptidases A and B reveal the propeptide to exist as a globular domain, followed by an extended alpha-helix; this shields the catalytic site, without specifically binding to it, while the substrate-binding site is blocked by making specific contacts [, ]. Other examples of protein families in this entry include: Intron maturase Putative mitochondrial processing peptidase alpha subunit Superoxide dismutase [Mn] (1.15.1.1 from EC) Asparagine synthetase [glutamine-hydrolysing] 3 (6.3.5.4 from EC) Glucose-6-phosphate isomerase (5.3.1.9 from EC) ; GO: 0004181 metallocarboxypeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 3DGV_A 3OSL_C 3D4U_A 2NSM_A 1QMU_A 1H8L_A 2PJ2_A 2PJ9_A 1ZG8_A 1Z5R_A ....
Probab=100.00 E-value=1.1e-42 Score=316.78 Aligned_cols=233 Identities=33% Similarity=0.640 Sum_probs=180.6
Q ss_pred CHHHHHHHHHhCCCcEEEEEeeeccCCceeeEEEEcCCCCCCCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcCCC
Q psy17404 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKID 80 (305)
Q Consensus 1 ~~~~l~~l~~~~p~~v~~~~iG~S~eGr~i~~~~i~~~~~~~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d 80 (305)
|++||++|+++||+++++.+||+|.+||+|++++|++........||.|+|+|++||+||+|++++++++++|++.| +|
T Consensus 1 i~~~l~~l~~~~p~~v~~~~iG~S~~Gr~i~~~~i~~~~~~~~~~k~~v~i~~~~Hg~E~~g~~~~l~~~~~L~~~~-~~ 79 (279)
T PF00246_consen 1 INAYLDALAARYPDIVRLESIGKSYEGRPIYALTIGSNSNGSDPGKPTVLIIAGIHGNEWIGSEALLYLIEELLSGY-DD 79 (279)
T ss_dssp HHHHHHHHHHHSTTTEEEEEEEE-TTS-EEEEEEESSSTTTTSTTSEEEEEEE-SSTT-THHHHHHHHHHHHHHHHT-TS
T ss_pred CHHHHHHHHHHCCCcEEEEEeeECCCCCeEEEEEeecccccccccccceEEEecccccccCchHHHHHHHHHhhccc-cc
Confidence 68999999999999999999999999999999999985333345799999999999999999999999999999987 79
Q ss_pred hHHHHhhccceEEEEeccCchhHHHHHHhhhhhhhccccccccceecccccceecCCCCCCC---CCC-------CCCCC
Q psy17404 81 DRVTRMLQTTRIHLMPSMNPDGYERAREAVEKWLQDIPFVLSANLHGGSLVANYPYDDNQAM---KPQ-------VDSPT 150 (305)
Q Consensus 81 ~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~~~~~k~~~~~~~~~~~g~dlnrnyp~~~~~~~---~p~-------~~~~~ 150 (305)
+.++.||++++|+|||++||||+++.+...+.|+++| .+..|+|||||||+.|+..+ .|+ ..+++
T Consensus 80 ~~~~~ll~~~~i~iiP~~NPDG~~~~~~~~~~w~~~R-----~n~~GvDlNRnf~~~w~~~~~~~~~~~~~y~g~~~~se 154 (279)
T PF00246_consen 80 PEVKELLDNVVIYIIPMVNPDGYEYGTSGDRGWRKNR-----SNANGVDLNRNFPYQWNEEGSSSNPCSETYRGPAPFSE 154 (279)
T ss_dssp HHHHHHHHHEEEEEES-SSHHHHHHHHHT-TTCCSTS-----SBTTS--GGGSSSSSTTSSSSBSSTTSTTB--SSTTTS
T ss_pred hhhhhhcccceEEEEeeecccceeeeeeccccccccc-----ccccccccccccCcccccccccCCCCCcccCCCcchhh
Confidence 9999999999999999999999999998888999885 46779999999999996542 121 22589
Q ss_pred CcHHHHHHHHHHHH-----hhcCcc----CCCCC-C----CCC------------------CCCCC-CCccccCceeeec
Q psy17404 151 PDDSIFKLLASSYA-----NAHKKM----YKDPG-C----PEY------------------PEENF-PGGIVNGAQWYVV 197 (305)
Q Consensus 151 pe~~~~~~l~~~y~-----~~h~~~----~~~~~-~----~~~------------------~~~~~-~~g~~~g~~~Y~~ 197 (305)
||+++++.+.+... ++|... |.++. + .+. .+..| ..|..++..+|++
T Consensus 155 pEt~al~~~~~~~~~~~~id~H~~~~~~~~p~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 234 (279)
T PF00246_consen 155 PETRALRNLIQDWNPDFFIDFHSGGNAILYPYGYSYDEPPPDADELRSLARAFAEALGSMSRGQNYDSYGITNGDNWYPA 234 (279)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEEESSSEEEESESSSSTSSTTTHHHHHHHHHHHHHHHHCHTTTTTBSEEEEEHHHHTTTT
T ss_pred hHHHHHHHHHhhcceeEEEeccccccceeeecccccccCCchhhhhhHHHHHHHHHhhhccccccccccCCccccccccc
Confidence 99999998876532 345321 23321 1 110 11223 3344444558999
Q ss_pred cCccchhhhhhcce-eEEEEEecCCC--CCCCCCchhHHHhhhhh
Q psy17404 198 SGGMQDYNYIHANT-LEITLELGCYK--FPPAKDLPSYWEDNLPA 239 (305)
Q Consensus 198 ~G~~~Dw~y~~~~~-~~~tiEl~~~~--~pp~~~i~~~~~en~~~ 239 (305)
+|++.||+|...++ ++||+|+++++ +||.++|.++|++++++
T Consensus 235 ~G~~~D~~~~~~g~~~~~t~E~~~~~~f~p~~~~i~~~~~~~~~~ 279 (279)
T PF00246_consen 235 SGSSDDYAYYHHGIPFSFTLELGCCGNFYPPASEIEPIWEENWEA 279 (279)
T ss_dssp SSSHHHHHHHHTTSSEEEEEEESSSSSTSS-GGGHHHHHHHHHH-
T ss_pred ccccceeehhhcCCcEEEEEEeCCCCCccCCHHHHHHHHHHHhhC
Confidence 99999999976665 99999999987 59999999999999874
No 23
>cd06905 Peptidase_M14-like_8 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=100.00 E-value=3.7e-43 Score=326.79 Aligned_cols=230 Identities=24% Similarity=0.299 Sum_probs=174.3
Q ss_pred CHHHHHHHHHhCCCcEEEEEeeeccCCceeeEEEEcCCCCCCCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcCCC
Q psy17404 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKID 80 (305)
Q Consensus 1 ~~~~l~~l~~~~p~~v~~~~iG~S~eGr~i~~~~i~~~~~~~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d 80 (305)
|.++|++|+++||+++++.+||+|+|||+|++|+|++........||.|||+|++|||||+|++++++++++|+++|++|
T Consensus 10 i~~~L~~La~~~P~lv~l~~IG~S~EGR~I~~l~Is~~~~~~~~~Kp~I~i~~giHarEwig~~~~l~li~~Ll~~y~~d 89 (360)
T cd06905 10 LTAALQAWASAYPQLCSLESIGKSYEGRDIWLLTLTNQATGPDREKPAFWIDANIHATEVTGSAVALYVIQTLLNGYGSD 89 (360)
T ss_pred HHHHHHHHHHHCCCceEEEEeeecCCCCceEEEEecCCCCCCCCCCcEEEEecCCCCCchHHHHHHHHHHHHHHHhccCC
Confidence 57899999999999999999999999999999999985433334699999999999999999999999999999999889
Q ss_pred hHHHHhhccceEEEEeccCchhHHHHHH-hhhhhhhccccccc-------------------------------------
Q psy17404 81 DRVTRMLQTTRIHLMPSMNPDGYERARE-AVEKWLQDIPFVLS------------------------------------- 122 (305)
Q Consensus 81 ~~~~~ll~~~~~~iiP~~NPDG~~~~~~-~~~~~~k~~~~~~~------------------------------------- 122 (305)
+.++++|++++|+|||++||||++++++ ..+.|||++.+...
T Consensus 90 ~~i~~lLd~~~~~IvP~vNPDG~e~~~~~~~r~wRk~r~~~~~~~~~~g~~~~D~n~D~~~~~mr~~d~~g~w~~~~~~p 169 (360)
T cd06905 90 PEVTRLLDGYTFYILPRLNPDGAEQALTHPPYVRRSSRRPYPYPDRIDGLYPEDIDGDGLILQMRVKDPCGAWKVSERDP 169 (360)
T ss_pred HHHHHHHhcCeEEEEeeeCCChheEEeeccccccccCCCCcccccccccccccccCccchhheeeccccccccccccccc
Confidence 9999999999999999999999999887 67889988743210
Q ss_pred -----------------------------------cceecccccceecCCCCCCCC---C-CCCCCCCcHHHHHHHHHHH
Q psy17404 123 -----------------------------------ANLHGGSLVANYPYDDNQAMK---P-QVDSPTPDDSIFKLLASSY 163 (305)
Q Consensus 123 -----------------------------------~~~~g~dlnrnyp~~~~~~~~---p-~~~~~~pe~~~~~~l~~~y 163 (305)
-.|.|+||||||||.|+..+. . ...+||||+++++++....
T Consensus 170 ~~m~~~~~~~~~g~~y~~~~eg~~~~~dg~~~~~~~~~~GvDlNRNf~~~W~~~~~~~y~G~~p~SEpEt~av~~~~~~~ 249 (360)
T cd06905 170 RIMVRREPDEFGGTYYRLLPEGLIRNYDGYNIKIAPPLEGLDFNRNFPHDWRPEGEQYGAGPFPFSEPETRAVVEFWTDH 249 (360)
T ss_pred hhhccccccccCceeeeecccccccccccccccccccccCCCcccCcCCCCCCCCCcCCCCCCCCChHHHHHHHHHHhcC
Confidence 013699999999999975432 0 1347999999999887643
Q ss_pred H------hhcC----ccCCCCC-CCCC-----------CCCCCC--Cc--cccCcee------eeccCccchhhhhhcce
Q psy17404 164 A------NAHK----KMYKDPG-CPEY-----------PEENFP--GG--IVNGAQW------YVVSGGMQDYNYIHANT 211 (305)
Q Consensus 164 ~------~~h~----~~~~~~~-~~~~-----------~~~~~~--~g--~~~g~~~------Y~~~G~~~Dw~y~~~~~ 211 (305)
. +.|. .++.++. +... .++... .| ..+++.. ++++|++.||+|+..++
T Consensus 250 ~~i~~~is~Hsyg~~il~P~g~~~~~~~~~~~~~~~~~la~~~~~~~~y~~~~~~~~~~~~~~~~~~G~~~Dw~y~~~gi 329 (360)
T cd06905 250 PNINGFISYHTYSGVILRPYSDKPDDQMPVDDLELYKALGEKGEELTGYPTVSVYHEFRYHPKEVTYGAFDDWAYDHLGI 329 (360)
T ss_pred CCeEEEEEecCCcCeeeeCCCCCcCcCCChhhHHHHHHHHHHHHHhcCccccccccceecCCcccccCChhhhhhhcCCe
Confidence 2 2342 2344442 2110 000000 01 1112122 38999999999987667
Q ss_pred eEEEEEecCCC----CCCCCCch
Q psy17404 212 LEITLELGCYK----FPPAKDLP 230 (305)
Q Consensus 212 ~~~tiEl~~~~----~pp~~~i~ 230 (305)
++||+||++.+ +++..++.
T Consensus 330 ~s~t~EL~~~~~~~~~~~~~~~~ 352 (360)
T cd06905 330 FAFTVELWDLPTEAGVKKYDFIQ 352 (360)
T ss_pred EEEEEEcCCCCcccCCChHHhhh
Confidence 99999999753 35555444
No 24
>smart00631 Zn_pept Zn_pept.
Probab=100.00 E-value=1.2e-42 Score=315.98 Aligned_cols=226 Identities=30% Similarity=0.474 Sum_probs=184.3
Q ss_pred CHHHHHHHHHhCCCcEEEEEeeeccCCceeeEEEEcCCCCCCCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcCCC
Q psy17404 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKID 80 (305)
Q Consensus 1 ~~~~l~~l~~~~p~~v~~~~iG~S~eGr~i~~~~i~~~~~~~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d 80 (305)
|.++|++|+++||+++++.+||+|++||+|++++|++.+. ..||.|+|+|++||+||+|++++++++++|+.+|+.|
T Consensus 7 ~~~~l~~l~~~~~~~v~~~~iG~S~~Gr~i~~~~i~~~~~---~~k~~v~i~a~~Hg~E~~g~~~~~~~i~~L~~~~~~~ 83 (277)
T smart00631 7 IEAWLKELAARYPDLVRLVSIGKSVEGRPIWVLKISDGGS---HNKPAIFIDAGIHAREWIGPATALYLINQLLENYGRD 83 (277)
T ss_pred HHHHHHHHHHHCCCceEEEeceecCCCCceEEEEEeCCCC---CCCcEEEEECCccccccccHHHHHHHHHHHHHhcccC
Confidence 5789999999999999999999999999999999998532 2599999999999999999999999999999999889
Q ss_pred hHHHHhhccceEEEEeccCchhHHHHHHhhhhhhhccccccccceecccccceecCCCCCCCCCC--C-----CCCCCcH
Q psy17404 81 DRVTRMLQTTRIHLMPSMNPDGYERAREAVEKWLQDIPFVLSANLHGGSLVANYPYDDNQAMKPQ--V-----DSPTPDD 153 (305)
Q Consensus 81 ~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~~~~~k~~~~~~~~~~~g~dlnrnyp~~~~~~~~p~--~-----~~~~pe~ 153 (305)
+.++++|++++|+|||++||||+++.+...+.|+++|... .++.|+|||||||++|+....|+ . .+++||+
T Consensus 84 ~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~wr~~r~~~--~~~~GvDLNRnf~~~w~~~~~p~~~~y~G~~~~sepEt 161 (277)
T smart00631 84 PRITKLLDKTDIYIVPVLNPDGYEYTHTGDRLWRKNRSPN--SNCRGVDLNRNFPFHWGKTGNPCSETYAGPSPFSEPET 161 (277)
T ss_pred HHHHHHHHcCcEEEEEeecCchhhheecccccccCCCCCC--CCCcCcccCCCCCCCCCCCCCCCCCCcCCCCCCCcHHH
Confidence 9999999999999999999999999887788999988654 68999999999999998744441 2 2689999
Q ss_pred HHHHHHHHHHH------hhcCc----cCCCCC-CC----C-----------------CCCCCCCCccccCceeeeccCcc
Q psy17404 154 SIFKLLASSYA------NAHKK----MYKDPG-CP----E-----------------YPEENFPGGIVNGAQWYVVSGGM 201 (305)
Q Consensus 154 ~~~~~l~~~y~------~~h~~----~~~~~~-~~----~-----------------~~~~~~~~g~~~g~~~Y~~~G~~ 201 (305)
+++.++...+. ++|.. +|.++. +. + ..+..|..|..++. +|++.|++
T Consensus 162 ~ai~~~~~~~~~~~~~id~Hs~~~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~y~~g~~~~~-~y~~~G~~ 240 (277)
T smart00631 162 KAVRDFIRSNRRFVLYIDLHSYSQLILYPYGYTKNDLPPNVDDLDAVAKALAKALASVHGTRYTYGISNGA-IYPASGGS 240 (277)
T ss_pred HHHHHHHHhcCCeeEEEEeccCCcEEEecCcCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCccccccccCc-ccCCCCch
Confidence 99998887662 34542 233321 11 0 01334666666654 68899999
Q ss_pred chhhhhhc-ceeEEEEEecCCC---C-CCCCCchhH
Q psy17404 202 QDYNYIHA-NTLEITLELGCYK---F-PPAKDLPSY 232 (305)
Q Consensus 202 ~Dw~y~~~-~~~~~tiEl~~~~---~-pp~~~i~~~ 232 (305)
.||+|... ++++||+||++++ | +|.++|.++
T Consensus 241 ~D~~~~~~gi~~~~t~El~~~~~~~~~~p~~~~~~~ 276 (277)
T smart00631 241 DDWAYGTLGIPFSFTLELRDDGRYGFLLPPSQIIPT 276 (277)
T ss_pred hhhhhccCCCcEEEEEEecCCCCCCccCCHHHccCC
Confidence 99999864 4799999999974 5 677776653
No 25
>cd06227 Peptidase_M14-like_2 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=100.00 E-value=3.6e-41 Score=303.50 Aligned_cols=210 Identities=20% Similarity=0.241 Sum_probs=168.1
Q ss_pred CHHHHHHHHHhCCCcEEEEEeeeccCCceeeEEEEcCCCCCCCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcCC-
Q psy17404 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKI- 79 (305)
Q Consensus 1 ~~~~l~~l~~~~p~~v~~~~iG~S~eGr~i~~~~i~~~~~~~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~- 79 (305)
|+++|++|+++||+ +++.+||+|+|||+|++|+|+...... ..||.||++||+|||||+|++++++|+++|+.++..
T Consensus 9 i~~~l~~l~~~~p~-~~~~~ig~S~egr~i~~i~~~~~~~~~-~~k~~i~i~agiHarE~i~~~~~l~li~~L~~~~~~~ 86 (272)
T cd06227 9 INEEADALVKNIRL-SRLGELIESVKVRNFSSITLNPNGDPS-KKKVKALLLFGEHARELISPETGLHLLSNLCGELAET 86 (272)
T ss_pred HHHHHHHHHHHCCC-cEEeeeeeccCCceeeEEEecCCCCCC-CCCCEEEEECCccCCchhhHHHHHHHHHHHHHhcccc
Confidence 57899999999999 999999999999999999999753211 359999999999999999999999999999998743
Q ss_pred ---ChHHHHhhccceEEEEeccCchhHHHHHHhhhhhhhccccccccceecccccceecCCCCCCCCC---C-----CCC
Q psy17404 80 ---DDRVTRMLQTTRIHLMPSMNPDGYERAREAVEKWLQDIPFVLSANLHGGSLVANYPYDDNQAMKP---Q-----VDS 148 (305)
Q Consensus 80 ---d~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~~~~~k~~~~~~~~~~~g~dlnrnyp~~~~~~~~p---~-----~~~ 148 (305)
++.++++|++++|+|||++||||+++.+...+.||||+ .|||||||||++|+..+.+ . ..+
T Consensus 87 ~~~~~~~~~lL~~~~i~ivP~~NPDG~~~~~~~~~~wR~N~--------~GVDLNRNf~~~w~~~~~~~~~~~y~G~~~~ 158 (272)
T cd06227 87 FDWGDLLKNILDNFDLKIIPNENPDGRKKVESGNYCLRENE--------NGVDLNRNYGADWGFKEDDYEDEEYSGPAPF 158 (272)
T ss_pred cchhHHHHHHHhcCcEEEEeccCCchheeEeccCcccccCC--------ccccccccCCcccccCCCCccccccCCCCCC
Confidence 37899999999999999999999999877777888775 5999999999999754421 1 236
Q ss_pred CCCcHHHHHHHHHHHH-----hhcCc----cCCCC----CC-CCC-------------CCCCCCCccccCceeeeccCcc
Q psy17404 149 PTPDDSIFKLLASSYA-----NAHKK----MYKDP----GC-PEY-------------PEENFPGGIVNGAQWYVVSGGM 201 (305)
Q Consensus 149 ~~pe~~~~~~l~~~y~-----~~h~~----~~~~~----~~-~~~-------------~~~~~~~g~~~g~~~Y~~~G~~ 201 (305)
+|||++++.++...+. ++|.. ++.++ .+ ++. .+..|..|.......|+++|++
T Consensus 159 sEpEt~av~~~~~~~~~~~~i~~Hs~~~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~G~~~~~~~Y~a~G~s 238 (272)
T cd06227 159 SEPETRVLRDLLTSFSPDVFLSVHSGTLALFTPYAYKKEQPEPNLAEDMRILLLISNKHCPRCQVGSAGKLVGYLAHGTS 238 (272)
T ss_pred CcHHHHHHHHHHHhCCCeEEEEeccCCCEEEecCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCceecCccceeecCCCCH
Confidence 8999999998877542 34532 22222 12 110 2455666665443459999999
Q ss_pred chhhhh-hcceeEEEEEecC
Q psy17404 202 QDYNYI-HANTLEITLELGC 220 (305)
Q Consensus 202 ~Dw~y~-~~~~~~~tiEl~~ 220 (305)
.||+|+ .+++++||+||+.
T Consensus 239 ~Dway~~~gip~s~t~EL~~ 258 (272)
T cd06227 239 MDYMYDVLKVPYSFTFEIYG 258 (272)
T ss_pred HHHHhhcCCCcEEEEEEccC
Confidence 999997 4677999999985
No 26
>cd06229 M14_Endopeptidase_I Peptidase M14-like domain of Gamma-D-glutamyl-L-diamino acid endopeptidase 1 (also known as Gamma-D-glutamyl-meso-diaminopimelate peptidase I, and Endopeptidase I (ENP1); EC 3.4.19.11). ENP1 is a member of the M14 family of metallocarboxypeptidases (MCPs). However it has an exceptional type of activity of hydrolyzing the gamma-D-Glu-(L)meso-diaminopimelic acid (gamma-D-Glu-Dap) bond of L-Ala-gamma-D-Glu-(L)meso-diaminopimelic acid and L-Ala-gamma-D-Glu-(L)meso-diaminopimelic acid(L)-D-Ala peptides. ENP1has a different substrate specificity and cellular role than MpaA (MpaA does not belong to this group). ENP1 hydrolyzes the gamma-D-Glu-Dap bond of MurNAc-tripeptide and MurNAc-tetrapeptide, as well as the amide bond of free tripeptide and tetrapeptide . ENP1 is active on spore cortex peptidoglycan, and is produced at stage IV of sporulation in forespore and spore integuments.
Probab=100.00 E-value=1.1e-39 Score=292.82 Aligned_cols=206 Identities=18% Similarity=0.232 Sum_probs=159.4
Q ss_pred ccCCceeeEEEEcCCCCCCCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcCCC-----hHHHHhhccceEEEEecc
Q psy17404 24 SVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKID-----DRVTRMLQTTRIHLMPSM 98 (305)
Q Consensus 24 S~eGr~i~~~~i~~~~~~~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d-----~~~~~ll~~~~~~iiP~~ 98 (305)
|+|||+|++++||++ +|.|+|+|++|||||+|++++++++++|+..|..+ ..+++||++++|+|||++
T Consensus 1 S~eGR~I~~~~ig~~-------~~~v~i~agiHarE~~~~~~~l~~i~~L~~~~~~~~~~~~~~~~~lL~~~~i~ivP~~ 73 (255)
T cd06229 1 SVLGRDIYEVKLGNG-------PKTVFYNASFHAREWITTLLLMKFIEEYARAYENNEKLGGYDLRELLENVTICFVPMV 73 (255)
T ss_pred CCCCceeeEEEEcCC-------CceEEEECCccccchhhHHHHHHHHHHHHHHhccCccccchhHHHHHhcCeEEEEeCc
Confidence 789999999999973 48899999999999999999999999999988543 457999999999999999
Q ss_pred CchhHHHHHHh----------hhhhhhcccc--ccccceecccccceecCCCCCCC----CC--C-----CCCCCCcHHH
Q psy17404 99 NPDGYERAREA----------VEKWLQDIPF--VLSANLHGGSLVANYPYDDNQAM----KP--Q-----VDSPTPDDSI 155 (305)
Q Consensus 99 NPDG~~~~~~~----------~~~~~k~~~~--~~~~~~~g~dlnrnyp~~~~~~~----~p--~-----~~~~~pe~~~ 155 (305)
||||++++++. .+.|++++.. .++.||.|||||||||++|+..+ .| . ..+||||+++
T Consensus 74 NPDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~GVDLNRNf~~~w~~~~~~s~~p~~~~y~G~~p~SEpEtra 153 (255)
T cd06229 74 NPDGVEIVQNGPYAIRNYYLELLVINAGSINFKEWKANARGVDLNRNFPAGWEKEKAGPKAPAPRNYKGEQPLSEPETIA 153 (255)
T ss_pred cCCchheeeecccccccchhhhHHhhcCCCcccccccCCcccccCCCCCCCCCcCCCCCCCCCccCcCCCCCCCchhHHH
Confidence 99999998752 4567777653 25789999999999999997532 23 1 2369999999
Q ss_pred HHHHHHHHH-----hhcCc----cCCCCCCCCC----------CCCCCCCccccCceeeeccCccchhhhhhcceeEEEE
Q psy17404 156 FKLLASSYA-----NAHKK----MYKDPGCPEY----------PEENFPGGIVNGAQWYVVSGGMQDYNYIHANTLEITL 216 (305)
Q Consensus 156 ~~~l~~~y~-----~~h~~----~~~~~~~~~~----------~~~~~~~g~~~g~~~Y~~~G~~~Dw~y~~~~~~~~ti 216 (305)
+..+...+. +.|.. +|.++..... ....|..+... . |+++|++.||+|...++++||+
T Consensus 154 l~~~~~~~~~~~~i~~Hs~g~~i~~~~~~~~~~~~~~~~~~~~~~~gy~~~~~~--~-~~~~G~~~Dw~~~~~gi~s~t~ 230 (255)
T cd06229 154 LAELTRENRFRAVLAYHSQGEEIYWGYGGLEPPESQKMAELLAEVSGYELVDSE--S-KRSYGGYKDWFIQKFRRPGFTI 230 (255)
T ss_pred HHHHHHhCCCeEEEEecCCCCeEEecCCCCCchHHHHHHHHHhhccCCcccccc--c-cCCCCCHHHHHHhhcCCeEEEE
Confidence 998886542 34422 1222210000 01123333322 2 8999999999999877779999
Q ss_pred EecCCCC-CCCCCchhHHHhhhhh
Q psy17404 217 ELGCYKF-PPAKDLPSYWEDNLPA 239 (305)
Q Consensus 217 El~~~~~-pp~~~i~~~~~en~~~ 239 (305)
||+..+- +|.+||.++|++|+..
T Consensus 231 El~~~~~~~~~~~~~~~~~~~~~~ 254 (255)
T cd06229 231 EIGRGTNPLPLSQFKTIYKENKGI 254 (255)
T ss_pred EeCCCCCCCChHHhHHHHHhhcCC
Confidence 9999766 7899999999999853
No 27
>cd06237 M14_Nna1_like_3 A bacterial subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP),-like proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins (such as alpha-tubulin in eukaryotes) to remove a C-terminal tyrosine. Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain.
Probab=100.00 E-value=9.2e-34 Score=251.80 Aligned_cols=185 Identities=18% Similarity=0.235 Sum_probs=143.0
Q ss_pred CHHHHHHHHHhCCCcEEEEEeeeccCCceeeEEEEcCCCCCCCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcCCC
Q psy17404 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKID 80 (305)
Q Consensus 1 ~~~~l~~l~~~~p~~v~~~~iG~S~eGr~i~~~~i~~~~~~~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d 80 (305)
|.+||++|++. +++++.+||+|+|||||++++|++.+ .||.|+++|++||+||+|+.++++|+++|+++ +
T Consensus 13 i~~~l~~L~~~--~~v~~~~iG~S~eGR~i~~l~ig~~~-----~k~~v~i~~~iH~~E~~g~~~~~~~~~~l~~~---~ 82 (244)
T cd06237 13 VKDWVDSLIKQ--PFVELELLGLSTQGRPLKALERGNPD-----SKEWIVVISRQHPPEVTGALAMKAFIETLLSD---S 82 (244)
T ss_pred HHHHHHHHhcC--CCeEEEEeeEcCCCCEEEEEEecCCC-----CCceEEEEcCcCCCcHHHHHHHHHHHHHHHhC---C
Confidence 46899999764 68999999999999999999998742 58999999999999999999999999999973 5
Q ss_pred hHHHHhhccceEEEEeccCchhHHHHHHhhhhhhhccccccccceecccccceecCCCCCCCCCCCCCCCCcHHHHHHHH
Q psy17404 81 DRVTRMLQTTRIHLMPSMNPDGYERAREAVEKWLQDIPFVLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLLA 160 (305)
Q Consensus 81 ~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~~~~~k~~~~~~~~~~~g~dlnrnyp~~~~~~~~p~~~~~~pe~~~~~~l~ 160 (305)
+.++++|++++|+|||++||||+++. .||+| ..|+||||||+- .++||++++..+.
T Consensus 83 ~~~~~ll~~~~i~ivP~~NPDG~~~~-----~wR~N--------~~GvDLNRnw~~-----------~sepEt~a~~~~~ 138 (244)
T cd06237 83 ELAKKFRAKYNVLLVPNMNPDGVDLG-----HWRHN--------ANGIDLNRDWSN-----------FNQPETRAIRDYL 138 (244)
T ss_pred HHHHHHHHhCEEEEEEeeCcchhhcC-----CccCC--------CCCcCCCCCCCC-----------CCCHHHHHHHHHH
Confidence 56799999999999999999999973 46655 469999999862 3689999998876
Q ss_pred HHH----------HhhcCc----cCCCCC-CCCC-----------CC---CCCCCccccCceeeeccCccchhhhhhcce
Q psy17404 161 SSY----------ANAHKK----MYKDPG-CPEY-----------PE---ENFPGGIVNGAQWYVVSGGMQDYNYIHANT 211 (305)
Q Consensus 161 ~~y----------~~~h~~----~~~~~~-~~~~-----------~~---~~~~~g~~~g~~~Y~~~G~~~Dw~y~~~~~ 211 (305)
... .+.|.. .|.++. .... .+ ..|..+. ....|+++|++.||++...++
T Consensus 139 ~~~~~~~~~~~~~id~Hs~~~~i~~~~~~~~~~~~p~~~~~~~~~l~~~~~~Y~~~~--~~~~~~~~g~~~Dw~~~~~~~ 216 (244)
T cd06237 139 VRLVKEGGKIVFALDFHSTWHDVFYTMPEDYKLQFPGFVADWLKELDKRILDYKVNN--RSGSSPDRGVSKQYFADEHGA 216 (244)
T ss_pred HHHhccCCCEEEEEEeccCCcceEecCCCCCCcccchHHHHHHHHhcCcCCCceecc--ccCcccCCCcHHHHHHHhCCC
Confidence 654 124532 122211 0000 11 1222221 223478999999999998777
Q ss_pred eEEEEEecCC
Q psy17404 212 LEITLELGCY 221 (305)
Q Consensus 212 ~~~tiEl~~~ 221 (305)
++||+||++.
T Consensus 217 ~~~T~E~g~~ 226 (244)
T cd06237 217 HAITYEVGDN 226 (244)
T ss_pred cEEEEecCCC
Confidence 8999999975
No 28
>cd03856 M14_Nna1_like Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This subfamily includes the human AGTPBP-1 and AGBL -2, -3, -4, and -5, and the mouse Nna1/CCP-1 and CCP -2 through -6. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induced in axotomized motor neurons. M
Probab=99.97 E-value=2.9e-30 Score=232.66 Aligned_cols=180 Identities=14% Similarity=0.114 Sum_probs=140.7
Q ss_pred CCcEEEEEeeeccCCceeeEEEEcCCCCCCCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcCCChHHHHhhccceE
Q psy17404 13 PNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKIDDRVTRMLQTTRI 92 (305)
Q Consensus 13 p~~v~~~~iG~S~eGr~i~~~~i~~~~~~~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d~~~~~ll~~~~~ 92 (305)
++.+++.+||+|.+||||++++++.. .+||.|||+|++||+||+|++++++++++|+++ ++.++++|++++|
T Consensus 25 ~~~v~l~~IG~s~egr~i~~~~~~~~-----~~k~~i~i~a~iH~~E~~~~~~~~~li~~Ll~~---~~~~~~ll~~~~~ 96 (269)
T cd03856 25 GNSCDLLTITSPPEGNDIKYEHLCSF-----ANKKYIFLIARVHPGETNASWVMKGFLEFLLSD---NPTAQSLRESFVF 96 (269)
T ss_pred CCceeEEEeccCCCCccccceeccCC-----CCCcEEEEEcCcCCCchHHHHHHHHHHHHHHhC---CHHHHHHHhcCeE
Confidence 78899999999999999999998763 269999999999999999999999999999984 5668999999999
Q ss_pred EEEeccCchhHHHHHHhhhhhhhccccccccceecccccceecCCCCCCCCCCCCCCCCcHHHHHHHHHHHH--------
Q psy17404 93 HLMPSMNPDGYERAREAVEKWLQDIPFVLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLLASSYA-------- 164 (305)
Q Consensus 93 ~iiP~~NPDG~~~~~~~~~~~~k~~~~~~~~~~~g~dlnrnyp~~~~~~~~p~~~~~~pe~~~~~~l~~~y~-------- 164 (305)
+|||++||||+++. .|| .|+.|+||||||+-. ...++||.++++.+...+.
T Consensus 97 ~ivP~~NPDG~~~g-----~~R--------~n~~G~DLNR~~~~p--------~~~~~pE~~~~~~~~~~~~~~~~~~~~ 155 (269)
T cd03856 97 KIVPMLNPDGVIRG-----NYR--------CSLSGVDLNRQWQNP--------SPDLHPEIYLVKGLMLYLAAGKRGVLF 155 (269)
T ss_pred EEEeeeCCcccccc-----CCc--------CCCCCCCcCCCCCCC--------CCCCCCCHHHHHHHHHHHHhccCCceE
Confidence 99999999999974 254 478999999999721 2357999999988877652
Q ss_pred --hhcCcc-----CCCCCCC-C----------------------CCCCCCCCccccCceeeeccCccchhhhhh-cceeE
Q psy17404 165 --NAHKKM-----YKDPGCP-E----------------------YPEENFPGGIVNGAQWYVVSGGMQDYNYIH-ANTLE 213 (305)
Q Consensus 165 --~~h~~~-----~~~~~~~-~----------------------~~~~~~~~g~~~g~~~Y~~~G~~~Dw~y~~-~~~~~ 213 (305)
++|+.. +-+|... . ..+..|..+. ....|+++|++.||+|.. +++++
T Consensus 156 ~idlH~~~~~~~~f~yG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~--~~~~~~~~gtsr~~~~~~~~i~~s 233 (269)
T cd03856 156 YCDFHGHSRKKNVFMYGCSFKDEVWDQGYRIIPKMLSQNAPLFCMFGCSFKVEK--SKASDPDRGTGRVVVAKQIKVQHS 233 (269)
T ss_pred EEEecCCCccCceEeecCCCchhhhhhHHHHHHHHHHhhChhhhhcCCCcCCCc--CCcccCCCChHHHHHHHhcCCcEE
Confidence 245332 2233211 0 0122333332 234789999999999975 66799
Q ss_pred EEEEecCCCC
Q psy17404 214 ITLELGCYKF 223 (305)
Q Consensus 214 ~tiEl~~~~~ 223 (305)
||+|++.++.
T Consensus 234 yTlE~~~~g~ 243 (269)
T cd03856 234 YTMEVTFNGN 243 (269)
T ss_pred EEEecCCCCc
Confidence 9999998764
No 29
>cd06908 M14_AGBL4_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-4, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human AGBL4 and the mouse cytosolic carboxypeptidase (CCP)-6. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal
Probab=99.96 E-value=1.1e-29 Score=226.86 Aligned_cols=135 Identities=21% Similarity=0.226 Sum_probs=117.5
Q ss_pred HHHHHHhCCCcEEEEEeeeccCCceeeEEEEcCCCC-CCCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcCCChHH
Q psy17404 5 LEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPG-VHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKIDDRV 83 (305)
Q Consensus 5 l~~l~~~~p~~v~~~~iG~S~eGr~i~~~~i~~~~~-~~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d~~~ 83 (305)
|++|++++|+++++.+||+|+|||+|++|+|++.++ .....||.|||+|++|++||+|+.++++++++|+.+ |+.+
T Consensus 1 l~~l~~~~p~~~~~~~iG~S~eGR~i~~l~It~~~~~~~~~~k~~I~i~ariHp~E~~~s~~~~~li~~L~~~---~~~~ 77 (261)
T cd06908 1 LDALEKRSLDYFRREQLGQSVQKRRLDLLTIDSPDNLREDSEKKVIFITARVHPGESPSSYVCQGLIDFLVSN---HPIA 77 (261)
T ss_pred ChHHHhhCCCcEEEEEeEEcCCCCeeEEEEEcCCCccccCCCCcEEEEECCcCCCChHHHHHHHHHHHHHhhC---CHHH
Confidence 578999999999999999999999999999998432 112369999999999999999999999999999984 8999
Q ss_pred HHhhccceEEEEeccCchhHHHHHHhhhhhhhccccccccceecccccceecCCCCCCCCCCCCCCCCcHHHHHHHHHHH
Q psy17404 84 TRMLQTTRIHLMPSMNPDGYERAREAVEKWLQDIPFVLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLLASSY 163 (305)
Q Consensus 84 ~~ll~~~~~~iiP~~NPDG~~~~~~~~~~~~k~~~~~~~~~~~g~dlnrnyp~~~~~~~~p~~~~~~pe~~~~~~l~~~y 163 (305)
+.|+++++|+||||+||||+++.. .+.+|.|+||||||+.. ..+++||..+++.+...+
T Consensus 78 ~~L~~~~~~~IvP~~NPDGv~~gn-------------~R~~~~G~DLNR~w~~p--------~~~~~PEv~av~~~i~~~ 136 (261)
T cd06908 78 KVLREHLVFKIVPMLNPDGVFLGN-------------YRCSLMGHDLNRHWHDP--------SPWAHPTLHAVKNLLKEL 136 (261)
T ss_pred HHHHHhCcEEEEeeecCcceeecC-------------CcCcCcCcCCCCCCCCC--------CcccChHHHHHHHHHHHh
Confidence 999999999999999999999863 24689999999999742 135789999998887665
No 30
>cd06234 M14_Nna1_like_1 A bacterial subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP)-like proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins (such as alpha-tubulin in eukaryotes) to remove a C-terminal tyrosine. Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain.
Probab=99.96 E-value=5.2e-29 Score=223.02 Aligned_cols=192 Identities=20% Similarity=0.238 Sum_probs=144.0
Q ss_pred HHHHHHHHHhCCCcEEEEEeeeccCCceeeEEEEcCCCCCCCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcCCCh
Q psy17404 2 QAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKIDD 81 (305)
Q Consensus 2 ~~~l~~l~~~~p~~v~~~~iG~S~eGr~i~~~~i~~~~~~~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d~ 81 (305)
.++|+.+++ . ..+++.+||+|+|||+|++++|++. + .+||.|||+|++||+|+++..+++.|+++|+.. .|+
T Consensus 17 ~~~l~~~~~-~-~~v~~~~iG~S~eGR~i~~l~I~~~-~---~~k~~V~i~a~iH~~E~~g~~~~~~ll~~L~~~--~d~ 88 (263)
T cd06234 17 LALIARAQG-A-PDVRLEVLGQTVQGRDIDLLTFGEP-G---PGKKKLWIIARQHPGETMAEWFMEGLLERLLDP--DDA 88 (263)
T ss_pred HHHHHHHhc-C-CCeEEEEEEEcCCCCeEEEEEEccC-C---CCCCEEEEECCCCCCcHHHHHHHHHHHHHHhhc--CCH
Confidence 568888876 3 4899999999999999999999873 2 269999999999999999999999999999984 588
Q ss_pred HHHHhhccceEEEEeccCchhHHHHHHhhhhhhhccccccccceecccccceecCCCCCCCCCCCCCCCCcHHHHHHHHH
Q psy17404 82 RVTRMLQTTRIHLMPSMNPDGYERAREAVEKWLQDIPFVLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLLAS 161 (305)
Q Consensus 82 ~~~~ll~~~~~~iiP~~NPDG~~~~~~~~~~~~k~~~~~~~~~~~g~dlnrnyp~~~~~~~~p~~~~~~pe~~~~~~l~~ 161 (305)
.++++|++++|+|||++||||+++.+ .+.||.|+||||||+-. ...++||+++++.+..
T Consensus 89 ~~~~ll~~~~~~IvP~~NPDG~~~g~-------------~R~n~~GvDLNRnw~~p--------~~~s~PEt~av~~~~~ 147 (263)
T cd06234 89 VARALLEKAVFYVVPNMNPDGSARGH-------------LRTNAAGANLNREWAEP--------SAERSPEVFAVRQRME 147 (263)
T ss_pred HHHHHHhcCEEEEEeeecchhhhhcC-------------CccCCCCCCCCCCCCCC--------CCCCCHHHHHHHHHHH
Confidence 99999999999999999999999853 13589999999998731 1347899998887765
Q ss_pred HH-----HhhcCcc-----CCCCCCCCC--------------------CCCCCC--CccccCceeeeccCccchhhhhhc
Q psy17404 162 SY-----ANAHKKM-----YKDPGCPEY--------------------PEENFP--GGIVNGAQWYVVSGGMQDYNYIHA 209 (305)
Q Consensus 162 ~y-----~~~h~~~-----~~~~~~~~~--------------------~~~~~~--~g~~~g~~~Y~~~G~~~Dw~y~~~ 209 (305)
.. .++|+.- |..+ |... ....|. .|.......+...|.+.||.+...
T Consensus 148 ~~~~~~~ld~Hs~~~~py~f~~g-~~~~p~~~~~l~~l~~~~~~al~~~~~~f~~~~~y~~~~~g~~~~~~a~~~~~~~~ 226 (263)
T cd06234 148 ETGVDFFLDVHGDEALPYNFIAG-SEGVPGWTPRLAALEARFKAALLRASPDFQTEHGYPKDAPGQANLTIATNWVAHRF 226 (263)
T ss_pred hcCCeEEEEeCCCCCCCccEecc-CCCCCCccHHHHHHHHHHHHHHHHhCcccccccccCCCCCCchhHHHHHHHHHhhc
Confidence 42 2355432 1111 2110 001111 111111122456678999999998
Q ss_pred ceeEEEEEecCCCC
Q psy17404 210 NTLEITLELGCYKF 223 (305)
Q Consensus 210 ~~~~~tiEl~~~~~ 223 (305)
++++||+|++..+.
T Consensus 227 ~~~s~TlEmpf~~~ 240 (263)
T cd06234 227 DCLSMTLEMPFKDN 240 (263)
T ss_pred CceEEEEEeecCCc
Confidence 89999999997653
No 31
>cd03862 Peptidase_M14-like_7 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=99.96 E-value=1.4e-28 Score=221.55 Aligned_cols=176 Identities=23% Similarity=0.400 Sum_probs=131.8
Q ss_pred CCceeeEEEEcCCCCCCCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcCCChHHHHhhccceEEEEeccCchhHHH
Q psy17404 26 EKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYER 105 (305)
Q Consensus 26 eGr~i~~~~i~~~~~~~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d~~~~~ll~~~~~~iiP~~NPDG~~~ 105 (305)
...||++++|++.. ..||+|+++||+||+||+|++++++++++|+.+|+.|+.++++|++++|+|||++||||+..
T Consensus 8 ~~~pi~~v~ig~~~----~~~p~v~i~~giHg~E~ig~~~~l~~l~~L~~~~~~d~~~~~ll~~~~i~ivP~vNPdG~~~ 83 (273)
T cd03862 8 LRFPIYALELGSPD----PKAPVLGLVGGVHGLERIGTQVLLAFLESLLERLRWDKLLQELLEKVRLVFLPLVNPVGMAL 83 (273)
T ss_pred CcceeEEEEecCCC----CCCCEEEEEcCcCCCcHHHHHHHHHHHHHHHHhccccHHHHHHHhCCeEEEEeccCcCHHHh
Confidence 35799999998742 25899999999999999999999999999999998899999999999999999999999654
Q ss_pred HHHhhhhhhhccccccccceecccccceecCCCCC------CC---CCC------C--CCCCCcHHHHHHHHHHH-----
Q psy17404 106 AREAVEKWLQDIPFVLSANLHGGSLVANYPYDDNQ------AM---KPQ------V--DSPTPDDSIFKLLASSY----- 163 (305)
Q Consensus 106 ~~~~~~~~~k~~~~~~~~~~~g~dlnrnyp~~~~~------~~---~p~------~--~~~~pe~~~~~~l~~~y----- 163 (305)
++| .|..|+|||||||+.|+. .+ +|+ . .++|||+++++++...+
T Consensus 84 ---------~~R-----~n~~GVDLNRNfp~~~~~~~~~~~~G~~~~p~~~~Y~G~~~~~sEpEt~al~~~~~~~~~~~~ 149 (273)
T cd03862 84 ---------KTR-----SNGNGVDLMRNAPVDAEDKPPFLVGGQRLSPRLPWYRGKNGAGMELEAQALCRFVRELLFESP 149 (273)
T ss_pred ---------ccc-----CCCCCcccCCCCCCCccccccccccCccCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcccCC
Confidence 332 356899999999999762 11 232 1 36899999998887654
Q ss_pred ----HhhcCc-------cCCCCC-C---CCC--------------CCCCCCCccccCceeeeccCccchhhhhh------
Q psy17404 164 ----ANAHKK-------MYKDPG-C---PEY--------------PEENFPGGIVNGAQWYVVSGGMQDYNYIH------ 208 (305)
Q Consensus 164 ----~~~h~~-------~~~~~~-~---~~~--------------~~~~~~~g~~~g~~~Y~~~G~~~Dw~y~~------ 208 (305)
.++|.. +|.++. + .+. .+..|..|. ....|+++|++.||+|..
T Consensus 150 ~~~~ld~HSg~G~~~~i~~Pyg~~~~~~~~~~~~~~l~~~~~~~~~~~~Y~~g~--~s~~Y~a~G~~~D~~y~~~~~~~~ 227 (273)
T cd03862 150 FSIALDCHSGFGLVDRIWFPYAYTKEPIPHLAEIYALKELLERTYPNHVYRFEP--QSRHYLTHGDLWDYLYDQHQKQQP 227 (273)
T ss_pred eEEEEEECCCCCccCEEEcCCcCCCCCCCCHHHHHHHHHHHHHhCCCCceEECC--cceeEECCCCHHHHHHhhcCcccc
Confidence 235652 133331 1 110 112333222 234799999999999974
Q ss_pred -cceeEEEEEecCC
Q psy17404 209 -ANTLEITLELGCY 221 (305)
Q Consensus 209 -~~~~~~tiEl~~~ 221 (305)
...++||+|++.-
T Consensus 228 ~~~~l~~TlE~Gt~ 241 (273)
T cd03862 228 NGRFLPLTLEMGSW 241 (273)
T ss_pred cccceeEEEEeecc
Confidence 3357999999974
No 32
>PRK10602 murein peptide amidase A; Provisional
Probab=99.95 E-value=1.2e-28 Score=217.16 Aligned_cols=189 Identities=17% Similarity=0.154 Sum_probs=134.8
Q ss_pred cEEEEEeeeccCCceeeEEEEcCCCCCCCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcCCChHHHHhhccceEEE
Q psy17404 15 LTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHL 94 (305)
Q Consensus 15 ~v~~~~iG~S~eGr~i~~~~i~~~~~~~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d~~~~~ll~~~~~~i 94 (305)
.++..+||+|+|||||++++++.. .|+.|+++||+||+||+|++++++++++|+.+ +..++|
T Consensus 14 ~~~~~~iG~S~egrpi~~l~~~~~------~~~~vli~agiHG~E~~g~~~~~~l~~~l~~~------------~~~~~i 75 (237)
T PRK10602 14 PPGTEHYGRSLLGAPLLWFPAPAA------SRESGLILAGTHGDETASVVTLSCALRTLTPS------------LRRHHV 75 (237)
T ss_pred cccccccccccCCCceEEEEcCCC------CCceEEEEecCCCCcHHHHHHHHHHHHhhhhh------------ccceEE
Confidence 367789999999999999999763 48899999999999999999999999988753 235789
Q ss_pred EeccCchhHHHHHHhhhhhhhccccccccceecccccceecC-CCCCCC--------CC---------CCCCCCCcHHHH
Q psy17404 95 MPSMNPDGYERAREAVEKWLQDIPFVLSANLHGGSLVANYPY-DDNQAM--------KP---------QVDSPTPDDSIF 156 (305)
Q Consensus 95 iP~~NPDG~~~~~~~~~~~~k~~~~~~~~~~~g~dlnrnyp~-~~~~~~--------~p---------~~~~~~pe~~~~ 156 (305)
||++||||+++..| .||.|+|||||||. .|...+ .| ...+|+||++++
T Consensus 76 ipvvNPDG~~~~~R--------------~n~~GvDLNRnFp~~~w~~~~~~~~w~~~~~~~~~~~y~G~~p~SepEt~al 141 (237)
T PRK10602 76 VLAVNPDGCQLGLR--------------ANANGVDLNRNFPAANWKEGETVYRWNSAAEERDVVLLTGDKPGSEPETQAL 141 (237)
T ss_pred EEEECccccccccc--------------cCCCCCchhhcCCCcccccccccccccCCCCccchhhccCCCCCCCHHHHHH
Confidence 99999999998642 47999999999997 665322 01 123589999999
Q ss_pred HHHHHHHH-----hhcCcc-CCCCCCCC----CCCCCCCCccccCceeeeccCccchhhhhhcceeEEEEEecCCCCCCC
Q psy17404 157 KLLASSYA-----NAHKKM-YKDPGCPE----YPEENFPGGIVNGAQWYVVSGGMQDYNYIHANTLEITLELGCYKFPPA 226 (305)
Q Consensus 157 ~~l~~~y~-----~~h~~~-~~~~~~~~----~~~~~~~~g~~~g~~~Y~~~G~~~Dw~y~~~~~~~~tiEl~~~~~pp~ 226 (305)
.++...+. +.|... +...+... ...+.|..+.+. ...|+++|++.||++..++ +.+|+|+++ .+..
T Consensus 142 ~~~i~~~~~~~~~s~HsP~~~~~~~~~~~~~~~la~af~~~~~~-~~~y~~~Gs~~~~a~~~gi-P~it~El~~--~~~~ 217 (237)
T PRK10602 142 CQLIHRLQPAWVVSFHDPLACIEDPRHSELGEWLAQAFELPLVT-SVGYETPGSFGSWCADLNL-HCITAELPP--ISAD 217 (237)
T ss_pred HHHHHHcCCCEEEEeeccccccCCccchHHHHHHHHHhCCCeEe-ecCCCCCCcHHHHHHHcCC-cEEEEecCC--cCcH
Confidence 88887653 234311 11111000 011234333322 3568999999999996554 559999996 6666
Q ss_pred CCchhHHHhhhhh
Q psy17404 227 KDLPSYWEDNLPA 239 (305)
Q Consensus 227 ~~i~~~~~en~~~ 239 (305)
+++...|..-+..
T Consensus 218 ~~v~~~~~~~~~~ 230 (237)
T PRK10602 218 EASEKYLFAMANL 230 (237)
T ss_pred HHHHHHHHHHHHH
Confidence 6777766554443
No 33
>cd06242 Peptidase_M14-like_1_5 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=99.95 E-value=2e-27 Score=214.10 Aligned_cols=134 Identities=21% Similarity=0.207 Sum_probs=114.9
Q ss_pred CHHHHHHHHHhCCCcEEEEEeeeccCCceeeEEEEcCCCC-CCCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcCC
Q psy17404 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPG-VHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKI 79 (305)
Q Consensus 1 ~~~~l~~l~~~~p~~v~~~~iG~S~eGr~i~~~~i~~~~~-~~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~ 79 (305)
|.+||++|++++|.+.++.+||+|+|||||++++|++.+. .....||.|||+|++||+||+|++++++++++|+.+
T Consensus 8 ~~~~l~~La~~~~~i~~~~~iG~S~eGR~i~~l~is~~~~~~~~~~kp~V~i~~giHg~E~~g~~a~l~ll~~L~~~--- 84 (268)
T cd06242 8 MESFMKSLASKNDWMSYHSDIGKSEEGRSIPYVYLSTSKSSSSSSKKLRVWLQGGVHGNEPAGDEAALALLGKLDNN--- 84 (268)
T ss_pred HHHHHHHHHHHCCCeEEEEECccccCCceeEEEEEecCCccccCCCCCEEEEECCcCCCCHHHHHHHHHHHHHHHhC---
Confidence 5789999999999877799999999999999999997431 113469999999999999999999999999999984
Q ss_pred ChHHHHhhccceEEEEeccCchhHHHHHHhhhhhhhccccccccceecccccceecCCCCCCCCCCCCCCCCcHHHHHHH
Q psy17404 80 DDRVTRMLQTTRIHLMPSMNPDGYERAREAVEKWLQDIPFVLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLL 159 (305)
Q Consensus 80 d~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~~~~~k~~~~~~~~~~~g~dlnrnyp~~~~~~~~p~~~~~~pe~~~~~~l 159 (305)
+..+++|++++|+|+|++||||+++.+| .|+.|+||||+|... ++||++++..+
T Consensus 85 -~~~~~lL~~~~i~ivP~~NPDG~~~~~R--------------~na~g~DlNRD~~~~-----------~~pEtra~~~~ 138 (268)
T cd06242 85 -PKWASVLEKIDIIVLPRYNPDGSAYFQR--------------TLATGYDPNRDHTKL-----------ARQQTRDIKEA 138 (268)
T ss_pred -chHHHHHhcCeEEEEeccCcchhhhccc--------------cCCcCcccCCCCCcc-----------cCHHHHHHHHH
Confidence 3345899999999999999999998653 579999999998542 58999998887
Q ss_pred HHHH
Q psy17404 160 ASSY 163 (305)
Q Consensus 160 ~~~y 163 (305)
...+
T Consensus 139 ~~~~ 142 (268)
T cd06242 139 FSKF 142 (268)
T ss_pred HHHh
Confidence 6654
No 34
>cd06235 M14_Nna1_like_2 Subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human Nna1/AGTPBP-1 and AGBL -2, -3, -4, and -5, and the mouse Nna1/CCP-1 and CCP -2 through -6. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induc
Probab=99.94 E-value=5.3e-26 Score=204.08 Aligned_cols=188 Identities=12% Similarity=0.078 Sum_probs=138.2
Q ss_pred CCCcEEEEEeeeccCCceeeEEEEcCCCC--CCCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcCCChHHHHhhcc
Q psy17404 12 YPNLTRLYSVGQSVEKRELWVLELSTHPG--VHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKIDDRVTRMLQT 89 (305)
Q Consensus 12 ~p~~v~~~~iG~S~eGr~i~~~~i~~~~~--~~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d~~~~~ll~~ 89 (305)
.++.+++.+||+|.+||+|++++|++... .....||.|+|+|++||+||+|+.+++.+++.|+.+ ++.++.||++
T Consensus 9 ~~~~~~~~~iG~S~eGr~i~~l~i~~~~~~~~~~~~k~~V~i~a~iH~~E~~~s~~~~~ll~~Ll~~---~~~~~~Ll~~ 85 (258)
T cd06235 9 NNQYLKRKILCTTLGGLPVPLLTITSPSSKSIPIKKKKVIVITARQHPGETNSSFVMQGFIDFLLSD---SPEAQYLREN 85 (258)
T ss_pred CCCceEEEEeEEcCCCCeeeEEEEeCCcccccccCCCcEEEEECCcCCCChHHHHHHHHHHHHHhcC---CHHHHHHHhc
Confidence 57899999999999999999999997321 122469999999999999999999999999999874 5778999999
Q ss_pred ceEEEEeccCchhHHHHHHhhhhhhhccccccccceecccccceecCCCCCCCCCCCCCCCCcHHHHHHHHHHHH-----
Q psy17404 90 TRIHLMPSMNPDGYERAREAVEKWLQDIPFVLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLLASSYA----- 164 (305)
Q Consensus 90 ~~~~iiP~~NPDG~~~~~~~~~~~~k~~~~~~~~~~~g~dlnrnyp~~~~~~~~p~~~~~~pe~~~~~~l~~~y~----- 164 (305)
++|+||||+||||+.+.. .+.|+.|+||||+|.... ..++||.++++.+.+.+.
T Consensus 86 ~~~~iiPm~NPDG~~~g~-------------~R~n~~GvDLNR~w~~p~--------~~~~PE~~~~~~~i~~~~~~~~~ 144 (258)
T cd06235 86 FIFKIIPMLNPDGVIHGN-------------YRCSLSGIDLNRQWKNPD--------KKLHPEIYHVKQLIKKLSQERNI 144 (258)
T ss_pred cEEEEEccccccceeecC-------------CcCCCCCCCcCCCCCCCC--------cccCcHHHHHHHHHHHHhccCCc
Confidence 999999999999998732 246899999999997421 247899999998887763
Q ss_pred ----hhcCcc-----CCCCCCCC-C----------------CCCCCCCccccCceeeeccCccchhhhhh-cceeEEEEE
Q psy17404 165 ----NAHKKM-----YKDPGCPE-Y----------------PEENFPGGIVNGAQWYVVSGGMQDYNYIH-ANTLEITLE 217 (305)
Q Consensus 165 ----~~h~~~-----~~~~~~~~-~----------------~~~~~~~g~~~g~~~Y~~~G~~~Dw~y~~-~~~~~~tiE 217 (305)
++|+.. +.+++... . ....|......-..-....|++..++|.. +.+.+||+|
T Consensus 145 ~~~iDlH~~s~~~~~F~yg~~~~~~~~~~~~~~~~p~~~~~~~~~f~~~~c~f~~~~~k~~tar~~~~~~~~~~~syTlE 224 (258)
T cd06235 145 ALFIDLHGHSRKKNSFMYGCSNSDDPLNYYKERLFPKLLSKLCPYFSFSSCSFKVQKDKEGTARVALWRELGIPNSYTLE 224 (258)
T ss_pred eEEEecccccccCCeeeecCCCCCcHHHHHHHHHHHHHHHhhCcccCccccccCCCCCCCCcHHHHHHHHcCCceEEEEe
Confidence 245332 22222100 0 01112211000001134568889999974 667999999
Q ss_pred ecCCCC
Q psy17404 218 LGCYKF 223 (305)
Q Consensus 218 l~~~~~ 223 (305)
++-+++
T Consensus 225 ~sf~g~ 230 (258)
T cd06235 225 TSFGGY 230 (258)
T ss_pred eecccc
Confidence 997655
No 35
>cd06238 Peptidase_M14-like_1_1 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. T
Probab=99.93 E-value=4.9e-26 Score=204.87 Aligned_cols=182 Identities=18% Similarity=0.096 Sum_probs=132.9
Q ss_pred eeeccCCceeeEEEEcCCCCCC-----------------------CCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHc
Q psy17404 21 VGQSVEKRELWVLELSTHPGVH-----------------------KPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNY 77 (305)
Q Consensus 21 iG~S~eGr~i~~~~i~~~~~~~-----------------------~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y 77 (305)
+|+|+|||||.++.|++. .+. ...+|.|||.|+|||+||+|++++++++++|+..
T Consensus 1 ~G~s~egR~l~~~~I~s~-~n~~~l~~~~~~~~~la~p~~~~~~~~~~~~~v~i~~~iH~~E~~g~~~~l~l~~~L~~~- 78 (271)
T cd06238 1 YGRTHEGRPLLLATITSP-ENIARLDQIREDHLALADPAATSSLISDQPVVVWLGYSVHGNEISGTEAALLTAYHLAAA- 78 (271)
T ss_pred CCcCCCCCeeEEEEEeCH-HHHHhHHHHHHHHHHhcCccccccccccCCcEEEEECCcCCCChHHHHHHHHHHHHHHHc-
Confidence 699999999999999983 221 1258999999999999999999999999999984
Q ss_pred CCChHHHHhhccceEEEEeccCchhHHHHH-----------Hhhhhhhhccc--cccccceecccccceecCCCCCCCCC
Q psy17404 78 KIDDRVTRMLQTTRIHLMPSMNPDGYERAR-----------EAVEKWLQDIP--FVLSANLHGGSLVANYPYDDNQAMKP 144 (305)
Q Consensus 78 ~~d~~~~~ll~~~~~~iiP~~NPDG~~~~~-----------~~~~~~~k~~~--~~~~~~~~g~dlnrnyp~~~~~~~~p 144 (305)
.++.++++|++++|+|+|++||||+++.. ...+.|+|.+. +..+.||.|+||||+|...
T Consensus 79 -~~~~~~~ll~~~~i~i~P~~NPDG~~r~~~w~~~~~~~~~~~d~~~r~~~~~wp~~R~n~~g~DLNRD~~~~------- 150 (271)
T cd06238 79 -QGDEIEALLDNAVVLIDPMQNPDGRDRFVNWYNSNRGMVPSADPQDREHNEPWPGGRTNHYWFDLNRDWLPL------- 150 (271)
T ss_pred -CCHHHHHHHhcCEEEEEeccCCCHHHHHHHhhhhccCCccccchhhhhcccCCccccccccCcccccccccc-------
Confidence 68899999999999999999999999632 23466777653 2346899999999999742
Q ss_pred CCCCCCCcHHHHHHHHHHH-----HhhcCc----cCCCCCCC----C-----------------------CCCCCCCCcc
Q psy17404 145 QVDSPTPDDSIFKLLASSY-----ANAHKK----MYKDPGCP----E-----------------------YPEENFPGGI 188 (305)
Q Consensus 145 ~~~~~~pe~~~~~~l~~~y-----~~~h~~----~~~~~~~~----~-----------------------~~~~~~~~g~ 188 (305)
++||++++..+...+ .++|.. .|...|+. + ..|..|..|.
T Consensus 151 ----s~pEtra~~~~~~~~~p~~~~D~H~~g~~~~~~~~P~~~~~~np~~~p~~~~~~~~~g~~~~~al~~~G~~Y~t~~ 226 (271)
T cd06238 151 ----TQPESRGRLAAYHEWRPNVVVDFHEMGTNSTYFFAPGAPPRTNPLTPDQNRDLTATIGRNHAKAFDEIGWLYFTRE 226 (271)
T ss_pred ----cCHHHHHHHHHHHhcCCeEEEEeccCCCccceEEeCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHhcCCcEEecc
Confidence 689998888776654 235531 11111100 0 0122222221
Q ss_pred ccCceeeeccCccchhhhhhcceeEEEEEecC
Q psy17404 189 VNGAQWYVVSGGMQDYNYIHANTLEITLELGC 220 (305)
Q Consensus 189 ~~g~~~Y~~~G~~~Dw~y~~~~~~~~tiEl~~ 220 (305)
.- ..+|++.|++.+|. ++.+.+|+|.+.
T Consensus 227 ~~-d~~ypg~g~s~~~~---~g~ig~l~E~~~ 254 (271)
T cd06238 227 VF-DDFYPGYGSTYPDL---NGAIGMLYEQAS 254 (271)
T ss_pred cc-cccccCcCcchhhh---cCceeEEEEecC
Confidence 11 36799999888776 557889999985
No 36
>cd06239 Peptidase_M14-like_1_2 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=99.93 E-value=1e-25 Score=198.23 Aligned_cols=122 Identities=23% Similarity=0.424 Sum_probs=107.1
Q ss_pred HHHhCCCcEEEEEeeeccCCceeeEEEEcCCCCCCCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcCCChHHHHhh
Q psy17404 8 ITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKIDDRVTRML 87 (305)
Q Consensus 8 l~~~~p~~v~~~~iG~S~eGr~i~~~~i~~~~~~~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d~~~~~ll 87 (305)
+.+++|+++++.+||+|++||||++++|++ +||+|++.|++||+|+.|++++++|+++|+.+ .++.++++|
T Consensus 2 ~~~~~p~~v~~~~iG~S~eGrpI~~l~ig~-------g~~~vli~agiHG~E~~g~~all~ll~~L~~~--~~~~~~~ll 72 (231)
T cd06239 2 LLEKLPAKFKVEVIGKSVEGRPIYSVKFGS-------GKIKILLWSQMHGNESTTTKALLDLLNFLGTS--KDQEAKKIL 72 (231)
T ss_pred hHHHCCCeeEEEEeeECCCCCeEEEEEEcC-------CCcEEEEEeccCCCCHHHHHHHHHHHHHHHHC--CCHHHHHHH
Confidence 456799999999999999999999999997 38999999999999999999999999999985 355668999
Q ss_pred ccceEEEEeccCchhHHHHHHhhhhhhhccccccccceecccccceecCCCCCCCCCCCCCCCCcHHHHHHHHHHH
Q psy17404 88 QTTRIHLMPSMNPDGYERAREAVEKWLQDIPFVLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLLASSY 163 (305)
Q Consensus 88 ~~~~~~iiP~~NPDG~~~~~~~~~~~~k~~~~~~~~~~~g~dlnrnyp~~~~~~~~p~~~~~~pe~~~~~~l~~~y 163 (305)
++.+|+|||++||||++..+ +.|..|+||||+|+-. ++||+++++.+.+.+
T Consensus 73 ~~~~v~iiP~lNPDG~~~~~--------------R~N~~GvDLNRdf~~~-----------s~PEtr~l~~~~~~~ 123 (231)
T cd06239 73 DEVTLVIIPMLNPDGAEAYT--------------RVNANGVDLNRDAQDL-----------SQPESRLLRDVYDGF 123 (231)
T ss_pred hCCEEEEEeccCccHHHHcc--------------cCCCcCCcCCCCCCCC-----------ChHHHHHHHHHHHhc
Confidence 99999999999999999843 2356799999999743 589999998887654
No 37
>cd06241 Peptidase_M14-like_1_4 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=99.92 E-value=6e-25 Score=197.86 Aligned_cols=141 Identities=26% Similarity=0.323 Sum_probs=114.5
Q ss_pred HHHHHHHHhCCCcEEEEEeeeccCCceeeEEEEcCCCCC-----CCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHc
Q psy17404 3 AELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGV-----HKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNY 77 (305)
Q Consensus 3 ~~l~~l~~~~p~~v~~~~iG~S~eGr~i~~~~i~~~~~~-----~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y 77 (305)
+||++|++++| .+++.+||+|.|||+|++++|+..... ....||+|||+||+||+|+.|.+++++++++|+...
T Consensus 1 a~~~~La~~~~-~v~~~~iG~S~eGR~i~~l~is~~~~~~~~~~~~~~kp~v~i~agiH~~E~~G~~a~~~ll~~L~~~~ 79 (266)
T cd06241 1 AFLERLAAASP-LIRLESFGKTPEGRPLHLLVLSKDGAFTPEEAKRSGKPVVLVQAGIHAGEIDGKDAGLMLLRDLADGK 79 (266)
T ss_pred CHHHHHHHhCC-ceEEEEeEeCCCCCeeEEEEEecCCccchhhhcccCCCEEEEeCCcCCCCchHHHHHHHHHHHHHhcc
Confidence 48999999886 699999999999999999999974311 124799999999999999999999999999999852
Q ss_pred CCChHHHHhhccceEEEEeccCchhHHHHHHhhhhhhhcc-cc---ccccceecccccceecCCCCCCCCCCCCCCCCcH
Q psy17404 78 KIDDRVTRMLQTTRIHLMPSMNPDGYERAREAVEKWLQDI-PF---VLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDD 153 (305)
Q Consensus 78 ~~d~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~~~~~k~~-~~---~~~~~~~g~dlnrnyp~~~~~~~~p~~~~~~pe~ 153 (305)
. .++|++++|+|||++||||+++.... ++.+. .+ .++.|..|+||||+|+-. ++||+
T Consensus 80 --~---~~ll~~~~i~ivP~~NpDG~~~~~~~---~r~~q~gp~~~~~R~na~g~DLNRdf~~~-----------~~pEt 140 (266)
T cd06241 80 --K---DALLDKVVLVFIPVFNVDGHERRSPY---NRTNQNGPEEYGWRGNARNLNLNRDFIKL-----------DAPEM 140 (266)
T ss_pred --h---HHHHhCCEEEEEeCCCccHHHhcccc---cccccCCCCccCceecccceecCCCCccc-----------CCHHH
Confidence 2 28999999999999999999986431 12221 22 267899999999999832 57999
Q ss_pred HHHHHHHHHH
Q psy17404 154 SIFKLLASSY 163 (305)
Q Consensus 154 ~~~~~l~~~y 163 (305)
+++..+...+
T Consensus 141 ra~~~~~~~~ 150 (266)
T cd06241 141 RAFAKLFNKW 150 (266)
T ss_pred HHHHHHHHHh
Confidence 8888876543
No 38
>cd00596 Peptidase_M14_like The M14 family of metallocarboxypeptidases (MCPs) are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly different specificities, with Carboxypeptidase A1 (CPA1) preferring
Probab=99.92 E-value=3.7e-25 Score=191.29 Aligned_cols=170 Identities=32% Similarity=0.527 Sum_probs=128.9
Q ss_pred EEEEecccCCchhHHHHHHHHHHHHHHHcCCChHHHHhhccceEEEEeccCchhHHHHHHhhhhhhhccccccccceecc
Q psy17404 49 FKYVANMHGNEVVGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYERAREAVEKWLQDIPFVLSANLHGG 128 (305)
Q Consensus 49 v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~~~~~k~~~~~~~~~~~g~ 128 (305)
|+|+|++||+|++|++++++++++|+..+... +.+|++.+|+|||++||||+++. .||+ +..|+
T Consensus 1 v~i~ag~Hg~E~~g~~~~~~~~~~l~~~~~~~---~~l~~~~~i~iiP~~NPdG~~~~-----~~R~--------n~~g~ 64 (196)
T cd00596 1 VLIIAGIHGNETIGVEAALALLRRLLSNYGRD---TKLLENGRLLVVPVLNPDGYEAV-----NWRK--------NANGV 64 (196)
T ss_pred CEEECCcCCCcHHHHHHHHHHHHHHHHcCcch---HHHHhCCeEEEEeCcccccceee-----eEEe--------CCCCc
Confidence 68999999999999999999999999975332 78999999999999999999983 2433 34599
Q ss_pred cccceecCCCCCCCCCCCCCCCCcHHHHHHHHHHH-----HhhcCc----cCCCCCCCC----C-----CCCC-------
Q psy17404 129 SLVANYPYDDNQAMKPQVDSPTPDDSIFKLLASSY-----ANAHKK----MYKDPGCPE----Y-----PEEN------- 183 (305)
Q Consensus 129 dlnrnyp~~~~~~~~p~~~~~~pe~~~~~~l~~~y-----~~~h~~----~~~~~~~~~----~-----~~~~------- 183 (305)
|||||||..|.. ...++||++++..+...+ .++|.. +|.++.+.. . .+..
T Consensus 65 DlNR~f~~~~~~-----~~~~~~e~~~~~~~~~~~~~~~~idlH~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~ 139 (196)
T cd00596 65 DLNRNFPGLWGK-----GPLSEPETRALAELIQQRKVDLYIDLHSGSLGVLYPYSHSDTPPPDAEIPKALAQLLADAARG 139 (196)
T ss_pred CccCCCCCcccC-----CCCCcHHHHHHHHHHHhCCceEEEEEecCCceEEecCCCCCCCCCCHHHHHHHHHHHHHhccC
Confidence 999999999852 124689999888877664 235643 233332110 0 0001
Q ss_pred CCCccccCceeeeccCccchhhhhhcceeEEEEEecCCCCCCCCCchhHHHhhhhh
Q psy17404 184 FPGGIVNGAQWYVVSGGMQDYNYIHANTLEITLELGCYKFPPAKDLPSYWEDNLPA 239 (305)
Q Consensus 184 ~~~g~~~g~~~Y~~~G~~~Dw~y~~~~~~~~tiEl~~~~~pp~~~i~~~~~en~~~ 239 (305)
...+......+|++.|++.||+|...++++||+|+++.+.++.+++.+.|++++..
T Consensus 140 ~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~tiE~g~~~~~~~~~~~~~~~~~~~~ 195 (196)
T cd00596 140 SKYGVGFGAKWYETGGGFDDWAYGNHGCPSFTIELGGQGYPPEEELPSRGEENKEA 195 (196)
T ss_pred CCCceeecceEEEcCCchhhhhhhCCCcEEEEEEeCCCCCCCHHHHHHHHHHHHhh
Confidence 11233333345899999999999988999999999999988899999999988765
No 39
>cd06243 Peptidase_M14-like_1_6 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=99.91 E-value=4.4e-24 Score=188.57 Aligned_cols=116 Identities=26% Similarity=0.425 Sum_probs=99.5
Q ss_pred eeeccCCceeeEEEEcCCCCC---CCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcCCChHHHHhhccceEEEEec
Q psy17404 21 VGQSVEKRELWVLELSTHPGV---HKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPS 97 (305)
Q Consensus 21 iG~S~eGr~i~~~~i~~~~~~---~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d~~~~~ll~~~~~~iiP~ 97 (305)
||+|+|||||++++|++.+.. ....||.|+++|++||+||+|+++++.++++|+. ++++.++++|++.+|+|+|+
T Consensus 1 iG~S~eGRpi~~l~i~~~~~~~~~~~~~~p~v~i~~giHG~E~~G~~a~l~ll~~L~~--~~~~~~~~lL~~~~i~ivP~ 78 (236)
T cd06243 1 IGTSQRGRPIHLVRVGFAEGPSALDIANRPTVLLVGTQHGDEPAGREALLIIARDLAF--GEDEELVPLLHQTTVLFVPT 78 (236)
T ss_pred CccCCCCCeeEEEEEecCCCccccccCCCCEEEEECCcCCCChHHHHHHHHHHHHHHh--cCCHHHHHHHhcceEEEEeC
Confidence 699999999999999985321 1246899999999999999999999999999987 56888999999999999999
Q ss_pred cCchhHHHHHHhhhhhhhccccccccceecccccceecCCCCCCCCCCCCCCCCcHHHHHHHHHHH
Q psy17404 98 MNPDGYERAREAVEKWLQDIPFVLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLLASSY 163 (305)
Q Consensus 98 ~NPDG~~~~~~~~~~~~k~~~~~~~~~~~g~dlnrnyp~~~~~~~~p~~~~~~pe~~~~~~l~~~y 163 (305)
+||||+++.. +.|+.|+||||+|+.. ++||++++..+...+
T Consensus 79 ~NPDG~~~~~--------------R~n~~g~DlNRd~~~~-----------~~pEt~al~~~~~~~ 119 (236)
T cd06243 79 ANPDGREADT--------------RSNADGIDINRDHLLL-----------NTPEAQALASVLRDY 119 (236)
T ss_pred cCccHhhcCC--------------cCCCCCcccCCCCCCC-----------CCHHHHHHHHHHHhc
Confidence 9999999843 3568999999999843 579998888776654
No 40
>cd06907 M14_AGBL2-3_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-2, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This subgroup includes the human AGBL-2, and -3, and the mouse cytosolic carboxypeptidase (CCPs)-2, and -3. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N
Probab=99.90 E-value=2.6e-23 Score=184.92 Aligned_cols=128 Identities=15% Similarity=0.195 Sum_probs=106.0
Q ss_pred CCCcEEEEEeeeccCCceeeEEEEcCCCCC--CCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcCCChHHHHhhcc
Q psy17404 12 YPNLTRLYSVGQSVEKRELWVLELSTHPGV--HKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKIDDRVTRMLQT 89 (305)
Q Consensus 12 ~p~~v~~~~iG~S~eGr~i~~~~i~~~~~~--~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d~~~~~ll~~ 89 (305)
.++.+++.++|+|+|||+|++|+|++.... ....||.|||+|++|+||+.++.++..+++.|+. .++..+.|+++
T Consensus 10 ~~~~~~~~~lg~S~eGR~i~~LtIt~~~~~~~~~~~K~~I~I~ariHp~E~~~s~~~~gll~~L~~---~~~~a~~Lr~~ 86 (261)
T cd06907 10 RSKFCKLRVLCRTLAGNTVYLLTITSPSSNPSLAAAKKAVVLTARVHPGETNASWMMKGFLDFLTS---NSPDAQLLRDT 86 (261)
T ss_pred cCCceEEEEEEECCCCCeeeEEEEcCCCccccccCCCCEEEEECCcCCChHHHHHHHHHHHHHHhc---CCHHHHHHHhc
Confidence 356899999999999999999999974321 1246999999999999999999999999999986 48899999999
Q ss_pred ceEEEEeccCchhHHHHHHhhhhhhhccccccccceecccccceecCCCCCCCCCCCCCCCCcHHHHHHHHHHH
Q psy17404 90 TRIHLMPSMNPDGYERAREAVEKWLQDIPFVLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLLASSY 163 (305)
Q Consensus 90 ~~~~iiP~~NPDG~~~~~~~~~~~~k~~~~~~~~~~~g~dlnrnyp~~~~~~~~p~~~~~~pe~~~~~~l~~~y 163 (305)
++|+||||+||||+.+.+. +.++.|+||||+|.-.|. ...|+...++.+...+
T Consensus 87 ~~f~IvPmlNPDGv~~G~~-------------R~~~~G~DLNR~w~~p~~--------~~~P~i~~~k~li~~l 139 (261)
T cd06907 87 FIFKIVPMLNPDGVIVGNY-------------RCSLAGRDLNRNYKTPLK--------DSFPTIWYTKNMVKRL 139 (261)
T ss_pred CCEEEEEeecCccccccCC-------------cCCCcCCCCCcCCCCCCc--------ccCchHHHHHHHHHHH
Confidence 9999999999999998642 468999999999875442 2467776666665543
No 41
>cd06244 Peptidase_M14-like_1_7 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=99.89 E-value=3.5e-23 Score=184.28 Aligned_cols=118 Identities=20% Similarity=0.240 Sum_probs=99.5
Q ss_pred eeeccCCceeeEEEEcCCCC---------------CC-----------CCCCCeEEEEecccCCchhHHHHHHHHHHHHH
Q psy17404 21 VGQSVEKRELWVLELSTHPG---------------VH-----------KPGVPEFKYVANMHGNEVVGRELLLLLAQYLC 74 (305)
Q Consensus 21 iG~S~eGr~i~~~~i~~~~~---------------~~-----------~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~ 74 (305)
||+|.|||+|+++.|++.+. .+ ...|+.|++++++||+|+.|+++++.++++|+
T Consensus 1 iGkS~eGR~l~~~~Is~~~a~ld~~~~~~~~l~l~dp~~~~~~~~~~~~~~~k~v~~~~~iHg~E~~g~~a~l~ll~~L~ 80 (268)
T cd06244 1 AGKSAEGRDIPVVVVAKPEAAVDKYENETLPLMLENPPELADKIEDGTIEDYKPPIINNNIHPDETPGIDAQTELIEELA 80 (268)
T ss_pred CCcCCCCCeeEEEEEeCcHHHHHHHHHHhhhhhhcCcccchhhhccccccccCeEEEEeCcCCCCHHHHHHHHHHHHHHH
Confidence 79999999999999998530 00 12577888899999999999999999999999
Q ss_pred HHcCC--------------ChHHHHhhccceEEEEeccCchhHHHHHHhhhhhhhccccccccceecccccceecCCCCC
Q psy17404 75 QNYKI--------------DDRVTRMLQTTRIHLMPSMNPDGYERAREAVEKWLQDIPFVLSANLHGGSLVANYPYDDNQ 140 (305)
Q Consensus 75 ~~y~~--------------d~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~~~~~k~~~~~~~~~~~g~dlnrnyp~~~~~ 140 (305)
.++.. ++.+++||+++.|+|+|++||||+++.. +.|+.|+||||+|.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~~lL~~~~i~i~P~~NPDG~~~~~--------------R~Na~G~DLNRD~~~~--- 143 (268)
T cd06244 81 QEDEIEFNTTDADGNEVTETLDVDDLLEKVIFLFNVTENPDGRVAGT--------------RENANGFDLNRDNSFQ--- 143 (268)
T ss_pred hcccccccccccccccccCCHHHHHHHhcCEEEEEecccCCcceeee--------------ecCCCccccCCCCCcc---
Confidence 87532 8899999999999999999999998742 3578999999999764
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHH
Q psy17404 141 AMKPQVDSPTPDDSIFKLLASSY 163 (305)
Q Consensus 141 ~~~p~~~~~~pe~~~~~~l~~~y 163 (305)
++||++++..+...+
T Consensus 144 --------sqpEt~av~~~~~~w 158 (268)
T cd06244 144 --------TQPETQAIVALIAEW 158 (268)
T ss_pred --------cCHHHHHHHHHHHHh
Confidence 578998888776654
No 42
>cd06236 M14_AGBL5_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-5, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human AGBL5 and the mouse cytosolic carboxypeptidase (CCP)-5. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal
Probab=99.89 E-value=4.8e-23 Score=186.92 Aligned_cols=126 Identities=20% Similarity=0.192 Sum_probs=105.7
Q ss_pred cEEEEEeeeccCCceeeEEEEcCCCCC---------------------CCCCCCeEEEEecccCCchhHHHHHHHHHHHH
Q psy17404 15 LTRLYSVGQSVEKRELWVLELSTHPGV---------------------HKPGVPEFKYVANMHGNEVVGRELLLLLAQYL 73 (305)
Q Consensus 15 ~v~~~~iG~S~eGr~i~~~~i~~~~~~---------------------~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L 73 (305)
.++.+++|+|.|||+|++|+|++.... ...+||.|||+|++||+||+|+.++++++++|
T Consensus 15 y~~~~~Lg~S~eGR~i~lLtITs~~~~~~~~~~~~~~l~~~~~~~~~~~~~~K~~V~I~ariHp~E~~~s~~~~~ll~~L 94 (304)
T cd06236 15 YYHREVLCYSLEGRRIDLLTITSCHGKLEQREPRLEGLFPDRKTPRPHFFFGKPVVFISSRVHPGETPSSFVFNGFLKFL 94 (304)
T ss_pred EEEEEEeEECCCCCceEEEEEecCcccccccccccccccccccccccccccCCcEEEEECCcCCCCchHHHHHHHHHHHH
Confidence 468899999999999999999974321 01479999999999999999999999999999
Q ss_pred HHHcCCChHHHHhhccceEEEEeccCchhHHHHHHhhhhhhhccccccccceecccccceecCCCCCCCCCCCCCCCCcH
Q psy17404 74 CQNYKIDDRVTRMLQTTRIHLMPSMNPDGYERAREAVEKWLQDIPFVLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDD 153 (305)
Q Consensus 74 ~~~y~~d~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~~~~~k~~~~~~~~~~~g~dlnrnyp~~~~~~~~p~~~~~~pe~ 153 (305)
+.+ .|+.++.|+++++|+||||+||||+++.+. +.+|.|+||||+|--. ...++||.
T Consensus 95 l~~--~d~~a~~L~~~~~~~IvPmlNPDGv~~g~~-------------R~~~~G~DLNR~y~~p--------~~~~~Pei 151 (304)
T cd06236 95 LNK--DDPRAALLRRRFVFKLIPMLNPDGVYRGHY-------------RTDTRGVNLNRVYLNP--------DPELHPSI 151 (304)
T ss_pred HhC--CCHHHHHHHhCCeEEEEEeEcccccccCcc-------------ccCCcCCCcCcCCCCC--------CcccCHHH
Confidence 984 488999999999999999999999998542 3689999999985421 12478999
Q ss_pred HHHHHHHHHH
Q psy17404 154 SIFKLLASSY 163 (305)
Q Consensus 154 ~~~~~l~~~y 163 (305)
.+++.+...+
T Consensus 152 ~aik~~i~~~ 161 (304)
T cd06236 152 YAIKKLILYL 161 (304)
T ss_pred HHHHHHHHHh
Confidence 8888877654
No 43
>cd06240 Peptidase_M14-like_1_3 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. T
Probab=99.88 E-value=3.3e-22 Score=179.60 Aligned_cols=130 Identities=21% Similarity=0.299 Sum_probs=102.1
Q ss_pred EEEEeeeccCCceeeEEEEcCCCCC---------------------------CCCCCCeEEEEecccCCchhHHHHHHHH
Q psy17404 17 RLYSVGQSVEKRELWVLELSTHPGV---------------------------HKPGVPEFKYVANMHGNEVVGRELLLLL 69 (305)
Q Consensus 17 ~~~~iG~S~eGr~i~~~~i~~~~~~---------------------------~~~~kp~v~i~~~~Hg~E~~~~~~~l~~ 69 (305)
++++||+|+|||+|+++.|++.... ....||.||+.|+|||+||+|+++++++
T Consensus 1 ~l~~iGkS~EGR~l~~~~Iss~~n~~~ld~~~~~~~~la~~~~~~~~~a~~~~~~~kp~v~i~~~iHg~E~~g~ea~l~l 80 (273)
T cd06240 1 KLVEIGKTEEGRPQIMAAISSPENLAKLDHYKAILRKLADPRGLTEEQARALIAEGKPIVWIDGGLHSTETGGPQMLMEL 80 (273)
T ss_pred CeeEeecCCCCCeEEEEEeeChhHhhhHHHHHHHHhhhhccccccchhhhhhhccCCCEEEEECCcCCCchHHHHHHHHH
Confidence 4789999999999999999973210 1235999999999999999999999999
Q ss_pred HHHHHHHcCCChHHHHhhccceEEEEeccCchhHHHHHHhhhhhhhccc----------cccccceecccccceecCCCC
Q psy17404 70 AQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYERAREAVEKWLQDIP----------FVLSANLHGGSLVANYPYDDN 139 (305)
Q Consensus 70 ~~~L~~~y~~d~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~~~~~k~~~----------~~~~~~~~g~dlnrnyp~~~~ 139 (305)
+++|+.. .|+.++++|++++|+|+|++||||+++.. +|.+... .....+..|.||||.|-..
T Consensus 81 ~~~L~~~--~d~~~~~lLd~~~i~i~P~~NPDG~er~~----~w~~~~~~~~~~~~~~~~~~~~~y~g~DlNRD~~~~-- 152 (273)
T cd06240 81 AYRLATE--EDPEIKRILDNVIVLIVPVANPDGRDRVV----DWYMRTLGPPKRDRSPLPPLYGKYVGHDNNRDGYMN-- 152 (273)
T ss_pred HHHHHhc--CCHHHHHHHhcCEEEEEeCcCCCHHHHhh----hhhhhccCCcccCCCCcccccCccCCcCCCcccchh--
Confidence 9999984 68999999999999999999999999843 3432211 1124566789999977542
Q ss_pred CCCCCCCCCCCCcHHHHHHHHHHH
Q psy17404 140 QAMKPQVDSPTPDDSIFKLLASSY 163 (305)
Q Consensus 140 ~~~~p~~~~~~pe~~~~~~l~~~y 163 (305)
..||++.+..+...+
T Consensus 153 ---------~~~et~~~~~~~~~w 167 (273)
T cd06240 153 ---------QQETTNNSRKLFLEW 167 (273)
T ss_pred ---------cCHHHHHHHHHHHhc
Confidence 367787777765543
No 44
>cd03857 Peptidase_M14-like_1 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The
Probab=99.87 E-value=3.2e-22 Score=176.63 Aligned_cols=115 Identities=32% Similarity=0.512 Sum_probs=96.9
Q ss_pred eeeccCCceeeEEEEcCCCCC-----CCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcCCChHHHHhhccceEEEE
Q psy17404 21 VGQSVEKRELWVLELSTHPGV-----HKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLM 95 (305)
Q Consensus 21 iG~S~eGr~i~~~~i~~~~~~-----~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d~~~~~ll~~~~~~ii 95 (305)
||+|+|||||++++|++.... ....||+|++.|++||+|+.|+++++.++++|+.. +...+.+|++.+|+||
T Consensus 1 iG~S~eGRpi~~~~i~~~~~~~~~~~~~~~k~~v~i~~giHg~E~~g~~a~~~l~~~l~~~---~~~~~~ll~~~~i~iv 77 (226)
T cd03857 1 IGKSVEGRPLWMVTLTTAEGMKKRALAKEGKPRVWIDAQIHGNESAGSDALLELLRQLASA---SDEEAKMLENIVIVLI 77 (226)
T ss_pred CccCCCCCeEEEEEEeCCccccccccccCCCcEEEEECCcCCCCchHHHHHHHHHHHHHhC---CHHHHHHHhCCEEEEE
Confidence 699999999999999983211 12368999999999999999999999999999874 4455899999999999
Q ss_pred eccCchhHHHHHHhhhhhhhccccccccceecccccceecCCCCCCCCCCCCCCCCcHHHHHHHHHHH
Q psy17404 96 PSMNPDGYERAREAVEKWLQDIPFVLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLLASSY 163 (305)
Q Consensus 96 P~~NPDG~~~~~~~~~~~~k~~~~~~~~~~~g~dlnrnyp~~~~~~~~p~~~~~~pe~~~~~~l~~~y 163 (305)
|++||||+++.+ +.|..|+||||+|+.. ++||++++..+...+
T Consensus 78 P~~NPDG~~~~~--------------R~n~~g~DLNRd~~~~-----------~~pEt~~~~~~~~~~ 120 (226)
T cd03857 78 PRANPDGAALFT--------------RENANGLDLNRDFLKL-----------TQPETRAVREVFIEW 120 (226)
T ss_pred eccCCChHHhcc--------------ccCCCcccCCCCCCCc-----------CCHHHHHHHHHHHHc
Confidence 999999999853 2467899999999864 478999888776654
No 45
>cd06904 M14_MpaA_like Peptidase M14-like domain of Escherichia coli Murein Peptide Amidase A (MpaA) and related proteins. MpaA is a member of the M14 family of metallocarboxypeptidases (MCPs), however it has an exceptional type of activity, it hydrolyzes the gamma-D-glutamyl-meso-diaminopimelic acid (gamma-D-Glu-Dap) bond in murein peptides. MpaA is specific for cleavage of the gamma-D-Glu-Dap bond of free murein tripeptide; it may also cleave murein tetrapeptide. MpaA has a different substrate specificity and cellular role than endopeptidase I, ENP1 (ENP1 does not belong to this group). MpaA works on free murein peptide in the recycling pathway.
Probab=99.86 E-value=5.3e-22 Score=168.99 Aligned_cols=150 Identities=23% Similarity=0.263 Sum_probs=104.6
Q ss_pred EEEEecccCCchhHHHHHHHHHHHHHHHcCCChHHHHhhccceEEEEeccCchhHHHHHHhhhhhhhccccccccceecc
Q psy17404 49 FKYVANMHGNEVVGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYERAREAVEKWLQDIPFVLSANLHGG 128 (305)
Q Consensus 49 v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~~~~~k~~~~~~~~~~~g~ 128 (305)
|+++|++||+|++|+++++++++.|+.. .|++.+|+|||++||||+++.+| .+..|+
T Consensus 1 vli~agiHG~E~~g~~~~~~l~~~l~~~---------~l~~~~i~ivP~~NPdG~~~~~R--------------~n~~gv 57 (178)
T cd06904 1 VLIIGGIHGDEPASVSDLEELLRILPGL---------ILRGLSWYVIPVLNPDGLLRATR--------------CNANGV 57 (178)
T ss_pred CEEEeccCCCCHHHHHHHHHHHHHHHHH---------hhcCCeEEEEeCcCccHHhhCcc--------------cCCCCc
Confidence 6899999999999999999999999874 27889999999999999998432 345699
Q ss_pred cccceecCCCCCCCCC-------CCCCCCCcHHHHHHHHHHHH-----hhcCcc-CCCCCCC-CCCCCCCCCccccCcee
Q psy17404 129 SLVANYPYDDNQAMKP-------QVDSPTPDDSIFKLLASSYA-----NAHKKM-YKDPGCP-EYPEENFPGGIVNGAQW 194 (305)
Q Consensus 129 dlnrnyp~~~~~~~~p-------~~~~~~pe~~~~~~l~~~y~-----~~h~~~-~~~~~~~-~~~~~~~~~g~~~g~~~ 194 (305)
|||||||+.|...+.+ ....++||++++.++..... +.|... +...... ....+.|..... ....
T Consensus 58 DLNRnFp~~~~~~~~~~~~~~~G~~~~sepEt~al~~~~~~~~~~~~idlHs~~~~~~~~~~~~~la~~~g~~~~-~~~~ 136 (178)
T cd06904 58 DLNRNFPTKDWPPGASRYRRYPGPKPGSEPESRALMDLIERFKPDVVVSFHAPLGVLDGDGPNEPLARKFGYLGF-DDLG 136 (178)
T ss_pred ChhhcCCccccccCCCcccccCCCCCCCCHHHHHHHHHHHhcCCeEEEEeCCCCCeecCCCchhHHHHHhCCCcc-ccCC
Confidence 9999999998643321 12358899998877765432 345321 0001110 001112211111 1123
Q ss_pred eeccCccchhhhhhcceeEEEEEecCCC
Q psy17404 195 YVVSGGMQDYNYIHANTLEITLELGCYK 222 (305)
Q Consensus 195 Y~~~G~~~Dw~y~~~~~~~~tiEl~~~~ 222 (305)
|++.|++.||+....+++++|+|++...
T Consensus 137 ~~~~G~~~~~a~~~~gip~it~Elg~~~ 164 (178)
T cd06904 137 YPTPGSLGSWAGVERNIPVITIELPYNL 164 (178)
T ss_pred ccCCCcHHHHHhhcCCCeEEEEEcCCcc
Confidence 6678999999999878999999999753
No 46
>cd06906 M14_Nna1 Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the mouse Nna1/CCP-1, and -4 proteins, and the human Nna1/AGTPBP-1 protein. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induced in axotomized motor neurons. Mutations in Nna
Probab=99.81 E-value=3.8e-20 Score=165.30 Aligned_cols=116 Identities=16% Similarity=0.211 Sum_probs=98.6
Q ss_pred HHHHHHHhCCCcEEEEEeeeccCCceeeEEEEcCCCCCC-------CCCCCeEEEEecccCCchhHHHHHHHHHHHHHHH
Q psy17404 4 ELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVH-------KPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQN 76 (305)
Q Consensus 4 ~l~~l~~~~p~~v~~~~iG~S~eGr~i~~~~i~~~~~~~-------~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~ 76 (305)
-|+.+....+..++...+++|.+||++.+|+|++.+... ...||.|||+|++|++|..|+.++..+++.|+.
T Consensus 3 ~l~~~~~~~~~y~~~~~Lc~Tl~G~~v~lltIt~~~~~~~~~~~~~~~~kp~I~I~ARvHPgEt~~Swi~~g~l~~L~~- 81 (278)
T cd06906 3 KLESLHDPQQIYFRQQVLCETLGGNSCPLLTITAMPESNYYEHICQFRNRPYIFLSARVHPGETNASWVMKGTLEFLMS- 81 (278)
T ss_pred hHhhhcCCcccEEeeecceeccCCCceeEEEEeCCCccccccccccccCCcEEEEEcccCCCcchHHHHHHHHHHHHhC-
Confidence 345555555678899999999999999999999854321 136999999999999999999999999998886
Q ss_pred cCCChHHHHhhccceEEEEeccCchhHHHHHHhhhhhhhccccccccceecccccceec
Q psy17404 77 YKIDDRVTRMLQTTRIHLMPSMNPDGYERAREAVEKWLQDIPFVLSANLHGGSLVANYP 135 (305)
Q Consensus 77 y~~d~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~~~~~k~~~~~~~~~~~g~dlnrnyp 135 (305)
.|+.++.|+++++|+||||+||||+.+.+ .+.++.|+||||+|.
T Consensus 82 --~d~~a~~Lr~~~~f~IvPmlNPDGvv~Gn-------------~Rc~~~G~DLNR~w~ 125 (278)
T cd06906 82 --SSPTAQSLRESYIFKIVPMLNPDGVINGN-------------HRCSLSGEDLNRQWQ 125 (278)
T ss_pred --CCHHHHHHHHhCcEEEEeeecCccceecc-------------cccCCCCCCCCCCCC
Confidence 48999999999999999999999999754 246789999999977
No 47
>cd06232 Peptidase_M14-like_5 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The
Probab=99.78 E-value=3.5e-19 Score=154.10 Aligned_cols=90 Identities=21% Similarity=0.144 Sum_probs=72.7
Q ss_pred eeeccCCceeeEEEEcCCCCCCCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcCCChHHHHhhccceEEEEeccCc
Q psy17404 21 VGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNP 100 (305)
Q Consensus 21 iG~S~eGr~i~~~~i~~~~~~~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d~~~~~ll~~~~~~iiP~~NP 100 (305)
-.+|+|||+|++++|+. +||+|||+||+|||||+|+..+++++++|++ +++++|+|+||+||
T Consensus 20 ~a~S~EGR~I~~l~i~~-------~Kp~I~I~gGvHarEwig~~~al~fi~~L~~-----------~~~~n~~I~P~vNP 81 (240)
T cd06232 20 AARSRQGRPVTGRYVAG-------LDHPVVISAGQHANETSGVVGALRAAEALAA-----------RPGAHFALIPLENP 81 (240)
T ss_pred cccccCCCeeeEEEecC-------CCcEEEEeCCcCCCcchhHHHHHHHHHHHhc-----------cCCceEEEEEeeCC
Confidence 45799999999999932 4999999999999999999999999999987 57899999999999
Q ss_pred hhHHHHHHhhhhhhhcccc---ccccceeccccc
Q psy17404 101 DGYERAREAVEKWLQDIPF---VLSANLHGGSLV 131 (305)
Q Consensus 101 DG~~~~~~~~~~~~k~~~~---~~~~~~~g~dln 131 (305)
|||++.++ .|+.+-+. ..+.+..|.|+|
T Consensus 82 DGYe~~~~---L~r~nP~~~hHaaR~~A~g~D~~ 112 (240)
T cd06232 82 DGYALHER---LRAEHPRHMHHAARYTALGDDLE 112 (240)
T ss_pred cHHHhhch---hhccCcccccchhhhcccCCCcc
Confidence 99999753 33333211 134566666665
No 48
>cd06231 Peptidase_M14-like_4 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=99.77 E-value=3.9e-18 Score=150.98 Aligned_cols=115 Identities=19% Similarity=0.274 Sum_probs=95.5
Q ss_pred CCCcEEEEEeeeccC-CceeeEEEEcCCCCCCCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcCCChHHHHhhccc
Q psy17404 12 YPNLTRLYSVGQSVE-KRELWVLELSTHPGVHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKIDDRVTRMLQTT 90 (305)
Q Consensus 12 ~p~~v~~~~iG~S~e-Gr~i~~~~i~~~~~~~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d~~~~~ll~~~ 90 (305)
..+.+++..+|+..+ ++||+++++.+.. ++||+|+|+||+||+|+.|++++++|+++|.. .+++++
T Consensus 11 ~~~~~~~~~~g~~~~~~~pL~~l~~~~~~----~~~p~vlI~gGiHG~E~~G~~a~l~~l~~l~~---------~~l~~~ 77 (236)
T cd06231 11 GASRLDVREYGQLAYQSYPLYALKSRGWD----SDLPRVLITAGIHGDEPAGPLGALEFLRAAAL---------ELAQDV 77 (236)
T ss_pred cccceEEEEccccccCCeeEEEEEcCCCC----CCCCEEEEECCCCCCcHHHHHHHHHHHHHHHH---------HHhcCC
Confidence 345689999999776 9999999997631 26899999999999999999999999999875 268899
Q ss_pred eEEEEeccCchhHHHHHHhhhhhhhccccccccceecccccceecCCCCCCCCCCCCCCCCcHHHHHHHHHHH
Q psy17404 91 RIHLMPSMNPDGYERAREAVEKWLQDIPFVLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLLASSY 163 (305)
Q Consensus 91 ~~~iiP~~NPDG~~~~~~~~~~~~k~~~~~~~~~~~g~dlnrnyp~~~~~~~~p~~~~~~pe~~~~~~l~~~y 163 (305)
+|+|+||+||||++..+| .|..|+|+||+||.. .++||.+++..+...+
T Consensus 78 ~i~ivP~vNPdG~~~~~R--------------~n~~g~DLNR~F~~~----------~~~~E~~al~~~~~~~ 126 (236)
T cd06231 78 NLSVYPCINPSGFEAITR--------------WNRNGIDPNRSFRSE----------SPSPEVRLLMEWLRRL 126 (236)
T ss_pred eEEEEECcChhHHhcCcc--------------CCCCCccccCCCCCC----------CCCHHHHHHHHHHHHh
Confidence 999999999999998543 356899999999974 2578888877766544
No 49
>COG2866 Predicted carboxypeptidase [Amino acid transport and metabolism]
Probab=99.26 E-value=8.5e-12 Score=117.47 Aligned_cols=102 Identities=25% Similarity=0.388 Sum_probs=84.0
Q ss_pred cEEEEEeeeccCCc-eeeEEEEcCCCCCCCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcCC-ChHHHHhhccceE
Q psy17404 15 LTRLYSVGQSVEKR-ELWVLELSTHPGVHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKI-DDRVTRMLQTTRI 92 (305)
Q Consensus 15 ~v~~~~iG~S~eGr-~i~~~~i~~~~~~~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~-d~~~~~ll~~~~~ 92 (305)
++....+|+|++|| +++..+-..++ .+++++|.+++|+| |..++..++..|+.+|.. +..++.+++++.+
T Consensus 120 ~~~~~~~g~sv~GR~~~~i~~~~~~~-----~~~~i~~~~~~H~~---g~~~~~~~~~~li~r~~~~~~~~~~lld~~~~ 191 (374)
T COG2866 120 LVELELIGRSVEGRDDPLITFPESNP-----EHKTILITAGQHAR---GEKMVEWFLYNLILRYLDPDVQVRKLLDRADL 191 (374)
T ss_pred cceeeecCccccccccceeeecCCCC-----ccceeeEecccccC---ccHHHHHHHHHHHHHhcCccchhhhhhccccE
Confidence 56778999999999 55555555432 48999999999997 777888888888888743 4788999999999
Q ss_pred EEEeccCchhHHHHHHhhhhhhhccccccccceecccccceecCC
Q psy17404 93 HLMPSMNPDGYERAREAVEKWLQDIPFVLSANLHGGSLVANYPYD 137 (305)
Q Consensus 93 ~iiP~~NPDG~~~~~~~~~~~~k~~~~~~~~~~~g~dlnrnyp~~ 137 (305)
++||.+||||+++.+. +.|..|+||||+|+..
T Consensus 192 ~vvp~~NpDG~~~~~l-------------r~na~~~dLnr~~~~~ 223 (374)
T COG2866 192 HVVPNVNPDGSDLGNL-------------RTNANGVDLNRNFIAP 223 (374)
T ss_pred EEecccCCchhhhccc-------------ccccCccchhhhccCC
Confidence 9999999999999753 5788999999999543
No 50
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=99.21 E-value=2.9e-11 Score=90.81 Aligned_cols=55 Identities=24% Similarity=0.407 Sum_probs=51.5
Q ss_pred eeeEEECcC-CCCccccEEEEeeeeEeEeeCCCceEEEecCCceEEEEEEecCccC
Q psy17404 251 VAGFVKGRE-GEGVAEASIAVEGLGHVVYSAQDGDYWRLLAPGNYTLHVSAPGEDQ 305 (305)
Q Consensus 251 i~G~v~d~~-g~pi~~A~i~i~~~~~~~~t~~~G~y~~~l~~G~y~l~vs~~Gy~~ 305 (305)
++|+|+|+. |+||++|+|.+.+....+.||++|.|.+.+++|.|+|.+|++||++
T Consensus 2 i~G~V~d~~t~~pl~~a~V~~~~~~~~~~Td~~G~F~i~~~~g~~~l~is~~Gy~~ 57 (88)
T PF13715_consen 2 ISGKVVDSDTGEPLPGATVYLKNTKKGTVTDENGRFSIKLPEGDYTLKISYIGYET 57 (88)
T ss_pred EEEEEEECCCCCCccCeEEEEeCCcceEEECCCeEEEEEEcCCCeEEEEEEeCEEE
Confidence 789999955 9999999999999888999999999988899999999999999974
No 51
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=99.16 E-value=6.9e-10 Score=101.54 Aligned_cols=211 Identities=17% Similarity=0.142 Sum_probs=114.7
Q ss_pred eeEEEEcCCCCCCCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcCCChHHHHhhccceEEEEeccCchhHHHHHHh
Q psy17404 30 LWVLELSTHPGVHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYERAREA 109 (305)
Q Consensus 30 i~~~~i~~~~~~~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d~~~~~ll~~~~~~iiP~~NPDG~~~~~~~ 109 (305)
|+++.|... . ..|+|+|+||+||+|+.|..++..++++|... .+ +-+++++|++||.|+....|
T Consensus 9 ~pv~~~~g~-~----~gp~v~i~~giHGdE~~G~~~~~~l~~~l~~~---------~~-~g~v~~vp~~Np~a~~~~~R- 72 (287)
T cd06251 9 IPVHVIRGK-K----PGPTLLLTAAIHGDELNGVEIIRRLLRQLDPK---------TL-RGTVIAVPVVNVFGFLNQSR- 72 (287)
T ss_pred eeEEEEeCC-C----CCCEEEEEcCccCCchhHHHHHHHHHhcCCcc---------cC-ceEEEEEeCCCHHHHHhccc-
Confidence 566666442 1 36899999999999999999999888876331 12 35778999999999987443
Q ss_pred hhhhhhccccccccceecccccceecCCCCCCCCCCCCCCCCcHHHHHHHHHHH---H----hhcCccCCCC--C---C-
Q psy17404 110 VEKWLQDIPFVLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLLASSY---A----NAHKKMYKDP--G---C- 176 (305)
Q Consensus 110 ~~~~~k~~~~~~~~~~~g~dlnrnyp~~~~~~~~p~~~~~~pe~~~~~~l~~~y---~----~~h~~~~~~~--~---~- 176 (305)
.+-.+.||||+||-... .+++.+....+.... . ++|....... + +
T Consensus 73 -------------~~~d~~dlNR~fpg~~~---------g~~~~~~a~~i~~~~~~~~d~~iDlHs~~~~~~~~~~v~~~ 130 (287)
T cd06251 73 -------------YLPDRRDLNRSFPGSKN---------GSLASRIAHLFFTEILSHADYGIDLHTGAIGRTNLPQIRAD 130 (287)
T ss_pred -------------cCCCccCHhhcCCCCCC---------CCHHHHHHHHHHHHHHhhCCEEEEcCCCCCCCCccceEEEc
Confidence 11248999999996532 123333333332211 1 2453321000 1 0
Q ss_pred -CCC----CCCCCCCccccCceee-eccCccchhhhhhcceeEEEEEecCCCCCCCCCchhHHHhhhhhHHHHHhhhccc
Q psy17404 177 -PEY----PEENFPGGIVNGAQWY-VVSGGMQDYNYIHANTLEITLELGCYKFPPAKDLPSYWEDNLPALLSYIEQVHRG 250 (305)
Q Consensus 177 -~~~----~~~~~~~g~~~g~~~Y-~~~G~~~Dw~y~~~~~~~~tiEl~~~~~pp~~~i~~~~~en~~~l~~~~~~~~~g 250 (305)
.+. ....|... ..+. ...+++-+.+....+++++|+|++..+...+ ...+....+++.++.+.. -
T Consensus 131 ~~~~~~~~la~~~g~~----~il~~~~~~g~l~~~~~~~g~~aitvE~G~~~~~~~----~~~~~~~~gi~~~L~~~g-~ 201 (287)
T cd06251 131 LDNPEVLELARAFGAP----VILNSPGRDGSLRAAAVDAGIPSITYEAGEALRFDE----DAIRAGVRGILNVLRHLG-M 201 (287)
T ss_pred CCCHHHHHHHHhcCCC----EEEeeCCCCchHHHHHHHcCCcEEEEeCCCCcccCH----HHHHHHHHHHHHHHHHCC-C
Confidence 000 00111111 1121 1123444445556789999999997543222 234445666666665432 1
Q ss_pred eeeEEECcCCCCccccEEEEeeeeEeEeeCCCceEEEecCCce
Q psy17404 251 VAGFVKGREGEGVAEASIAVEGLGHVVYSAQDGDYWRLLAPGN 293 (305)
Q Consensus 251 i~G~v~d~~g~pi~~A~i~i~~~~~~~~t~~~G~y~~~l~~G~ 293 (305)
+.|. -.+ +...+.+......+.+...|.|.....+|.
T Consensus 202 l~~~-----~~~-~~~~~~~~~~~~~v~A~~~G~~~~~~~~Gd 238 (287)
T cd06251 202 LDGR-----RTP-KESEPVIARSSVWVRAPQGGLLRSLVKLGD 238 (287)
T ss_pred ccCC-----CCC-CCCceEEecCCeEEecCCCeEEEEecCCCC
Confidence 2221 111 112333333334566788888865555554
No 52
>cd06233 Peptidase_M14-like_6 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The
Probab=99.13 E-value=2.3e-10 Score=103.42 Aligned_cols=83 Identities=20% Similarity=0.245 Sum_probs=68.1
Q ss_pred eeeEEEEcCCCCCCCCCCCeEEEEecccCCc-hhHHHHHHHHHHHHHHHcCCChHHHHhhccceEEEEeccCchhHHHHH
Q psy17404 29 ELWVLELSTHPGVHKPGVPEFKYVANMHGNE-VVGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYERAR 107 (305)
Q Consensus 29 ~i~~~~i~~~~~~~~~~kp~v~i~~~~Hg~E-~~~~~~~l~~~~~L~~~y~~d~~~~~ll~~~~~~iiP~~NPDG~~~~~ 107 (305)
+|.++.|+... ..|.+++++|+||.| .+|+.+++.+++++.. +.+..+..|++||++||.|+...+
T Consensus 39 ~i~v~~~g~~~-----~~~~l~i~sGvHG~Eg~~Gs~~~~~ll~~~~~--------~~~~~~~~vi~vh~vNP~Gf~~~~ 105 (283)
T cd06233 39 AIDVARLGPAD-----AKRLLVITSGTHGVEGFCGSAIQLALLRELLP--------RSLPAGVAVLLVHALNPYGFAHLR 105 (283)
T ss_pred eeeEEEEcCCC-----CCcEEEEEecccCCcccchHHHHHHHHHhcch--------hhccCCceEEEEeCcCHHHHhhcc
Confidence 68888888632 467999999999999 7999999999988764 245568899999999999998744
Q ss_pred HhhhhhhhccccccccceecccccceecCCC
Q psy17404 108 EAVEKWLQDIPFVLSANLHGGSLVANYPYDD 138 (305)
Q Consensus 108 ~~~~~~~k~~~~~~~~~~~g~dlnrnyp~~~ 138 (305)
| .|-+|+||||||-...
T Consensus 106 R--------------~nedgvDLNRnf~d~~ 122 (283)
T cd06233 106 R--------------VNENNVDLNRNFLDFS 122 (283)
T ss_pred c--------------CCCCCCChhhcccccC
Confidence 3 5789999999995443
No 53
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=99.09 E-value=1.5e-10 Score=85.55 Aligned_cols=55 Identities=35% Similarity=0.550 Sum_probs=45.5
Q ss_pred eeeEEECcCCCCccccEEEEe----eeeEeEeeCCCceEEEe-cCCceEEEEEEecCccC
Q psy17404 251 VAGFVKGREGEGVAEASIAVE----GLGHVVYSAQDGDYWRL-LAPGNYTLHVSAPGEDQ 305 (305)
Q Consensus 251 i~G~v~d~~g~pi~~A~i~i~----~~~~~~~t~~~G~y~~~-l~~G~y~l~vs~~Gy~~ 305 (305)
|+|+|+|++|+||++|.|.+. +....+.||.+|.|.+. |+||.|+|.+++.||++
T Consensus 2 I~G~V~d~~g~pv~~a~V~l~~~~~~~~~~~~Td~~G~f~~~~l~~g~Y~l~v~~~g~~~ 61 (82)
T PF13620_consen 2 ISGTVTDATGQPVPGATVTLTDQDGGTVYTTTTDSDGRFSFEGLPPGTYTLRVSAPGYQP 61 (82)
T ss_dssp EEEEEEETTSCBHTT-EEEET--TTTECCEEE--TTSEEEEEEE-SEEEEEEEEBTTEE-
T ss_pred EEEEEEcCCCCCcCCEEEEEEEeeCCCEEEEEECCCceEEEEccCCEeEEEEEEECCcce
Confidence 789999999999999999998 44567889999999776 99999999999999974
No 54
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=99.09 E-value=2.4e-09 Score=98.43 Aligned_cols=217 Identities=15% Similarity=0.150 Sum_probs=118.6
Q ss_pred eeeEEEEcCCCCCCCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcCCChHHHHhhccceEEEEeccCchhHHHHHH
Q psy17404 29 ELWVLELSTHPGVHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYERARE 108 (305)
Q Consensus 29 ~i~~~~i~~~~~~~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d~~~~~ll~~~~~~iiP~~NPDG~~~~~~ 108 (305)
.|...+++. +.|+|+|+|++||+|..|..++.+++++|....... .+.-+-++++||++||.|+....|
T Consensus 9 ~~~~~~~g~-------~gp~v~i~agvHGdE~~G~~~~~~L~~~l~~~~~~~----~~~l~g~v~~vP~~N~~a~~~~~R 77 (298)
T cd06253 9 RIEGFNFGG-------GEKRICIVGGIHGDELQGLYICSLLIRFLKELEKRG----PLKLNGIVDVIPSVNPLGLNLGTR 77 (298)
T ss_pred EEEeeecCC-------CCcEEEEEccCccchHHHHHHHHHHHHHHhhhhccc----ccccCceEEEEeCcCHHHHHHhhC
Confidence 455556663 368999999999999999999999999997632111 112368999999999999987443
Q ss_pred hhhhhhhccccccccceecccccceecCCCCCCCCCCCCCCCCcHHHHHHHHHHHH------hhcCcc-CCC-CC---CC
Q psy17404 109 AVEKWLQDIPFVLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLLASSYA------NAHKKM-YKD-PG---CP 177 (305)
Q Consensus 109 ~~~~~~k~~~~~~~~~~~g~dlnrnyp~~~~~~~~p~~~~~~pe~~~~~~l~~~y~------~~h~~~-~~~-~~---~~ 177 (305)
.....+.||||.||-.-. .+++.+....+..... ++|..- ... -| +.
T Consensus 78 -------------~~p~d~~dlNR~Fpg~~~---------g~~~~riA~~~~~~~~~~d~~iDLHsg~~~~~~~p~v~~~ 135 (298)
T cd06253 78 -------------FWPTDNSDINRMFPGDPQ---------GETTQRIAAAVFEDVKGADYCIDLHSSNIFLEEIPQVRLY 135 (298)
T ss_pred -------------cCCCCCCcccccCCCCCC---------CcHHHHHHHHHHHHhcCCCEEEEccCCCcccccCCeEEEc
Confidence 112357899999995421 1233333333322221 234321 000 01 00
Q ss_pred -CC------CCCCCCCccccCceee-e-c---cCccchhhhhhcceeEEEEEecCCCCCCCCCchhHHHhhhhhHHHHHh
Q psy17404 178 -EY------PEENFPGGIVNGAQWY-V-V---SGGMQDYNYIHANTLEITLELGCYKFPPAKDLPSYWEDNLPALLSYIE 245 (305)
Q Consensus 178 -~~------~~~~~~~g~~~g~~~Y-~-~---~G~~~Dw~y~~~~~~~~tiEl~~~~~pp~~~i~~~~~en~~~l~~~~~ 245 (305)
.. ....|.. ...+. . . .|++. +.....+++++|+|++...-.. +...+.-..+++.++.
T Consensus 136 ~~~~~~~~~lA~~fg~----~~i~~~~~~~~~~g~~~-~~~~~~g~paitvE~G~~~~~~----~~~~~~~~~gi~~~L~ 206 (298)
T cd06253 136 KTGSESLLPLAKFLNL----DVIWIHPSSTVDEATLA-HNLQVWGTPAFSVEMGVGMRID----KEYANQIVSGILRFMT 206 (298)
T ss_pred CCCCHHHHHHHHHhCC----CEEEecCCCCcchhhHH-HHHHHhCCeEEEEEcCCCcccC----HHHHHHHHHHHHHHHH
Confidence 00 0001111 11222 1 1 23433 4445678999999999754221 2234455677777775
Q ss_pred hhccceeeEEECcCCCCccccEEEEeeeeEeEeeCCCceEEEecCCce
Q psy17404 246 QVHRGVAGFVKGREGEGVAEASIAVEGLGHVVYSAQDGDYWRLLAPGN 293 (305)
Q Consensus 246 ~~~~gi~G~v~d~~g~pi~~A~i~i~~~~~~~~t~~~G~y~~~l~~G~ 293 (305)
+.- -+.|.. -.+.+...+.. .....+.+...|.|.....+|.
T Consensus 207 ~~g-~l~g~~----~~~~~~~~~~~-~~~~~v~A~~~Gl~~~~~~~G~ 248 (298)
T cd06253 207 KMG-ILKGNV----HNGYRSTIAEE-RDVVYVNAETSGIFVPAKHLGD 248 (298)
T ss_pred HCc-CccCCC----CCCCCCceeec-CceEEEEcCCCeEEEECcCCCC
Confidence 532 134321 11111111211 2234467788888876666665
No 55
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=99.03 E-value=7.2e-09 Score=94.89 Aligned_cols=83 Identities=19% Similarity=0.211 Sum_probs=61.9
Q ss_pred eeeEEEEcCCCCCCCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcCCChHHHHhhccceEEEEeccCchhHHHHHH
Q psy17404 29 ELWVLELSTHPGVHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYERARE 108 (305)
Q Consensus 29 ~i~~~~i~~~~~~~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d~~~~~ll~~~~~~iiP~~NPDG~~~~~~ 108 (305)
.|.+..|... + ..|+|+|+||+||+|+.|..++..|+++|-.. . -+-.++++|++||.|+....|
T Consensus 5 ~~pv~~~~g~-~----~gp~v~i~agvHG~E~~G~~~~~~l~~~l~~~---------~-~~g~v~~vp~~N~~a~~~~~r 69 (288)
T cd06254 5 AIPVTLINGV-N----PGPTLAITAGVHGGEYPGIQALQKLAREIDPA---------K-LSGTLIIVHVLNLSGFYARTP 69 (288)
T ss_pred cccEEEEeCC-C----CCCEEEEEecccCCchhHHHHHHHHHHhCCcc---------c-CeEEEEEEeCcCHHHHHhcCc
Confidence 4566666543 1 36899999999999999999999998876221 1 256789999999999986322
Q ss_pred hhhhhhhccccccccceecccccceecCCC
Q psy17404 109 AVEKWLQDIPFVLSANLHGGSLVANYPYDD 138 (305)
Q Consensus 109 ~~~~~~k~~~~~~~~~~~g~dlnrnyp~~~ 138 (305)
. .....+.||||+||-..
T Consensus 70 ---------~---~~~~d~~dlNR~fpg~~ 87 (288)
T cd06254 70 ---------Y---IVPEDGKNLNRVFPGDK 87 (288)
T ss_pred ---------c---cCCCCCCchhhcCCCCC
Confidence 0 11246789999999874
No 56
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=99.02 E-value=5.1e-09 Score=97.07 Aligned_cols=82 Identities=22% Similarity=0.335 Sum_probs=62.3
Q ss_pred ceeeEEEEcCCCCCCCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcCCChHHHHhhccceEEEEeccCchhHHHHH
Q psy17404 28 RELWVLELSTHPGVHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYERAR 107 (305)
Q Consensus 28 r~i~~~~i~~~~~~~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d~~~~~ll~~~~~~iiP~~NPDG~~~~~ 107 (305)
-.|++..|... .-|+|+|+||+||+|..|..++.+++++|... .+ +-+++++|++||-|+....
T Consensus 22 ~~iPv~v~~g~------~gp~v~I~aGiHGdE~~G~~~~~~L~~~l~~~---------~l-~G~vi~vP~~Np~a~~~~~ 85 (316)
T cd06252 22 VMIPITVIKNG------DGPTVLLTGGNHGDEYEGQIALLRLARRLDPE---------EV-RGRVIILPALNFPAVQAGT 85 (316)
T ss_pred eEeeEEEEeCC------CCCEEEEEccCCCCchHHHHHHHHHHHhCChh---------hC-eEEEEEEeCCCHHHHHhcc
Confidence 47777777653 15899999999999999999999999887431 12 4588999999999998643
Q ss_pred HhhhhhhhccccccccceecccccceecCCC
Q psy17404 108 EAVEKWLQDIPFVLSANLHGGSLVANYPYDD 138 (305)
Q Consensus 108 ~~~~~~~k~~~~~~~~~~~g~dlnrnyp~~~ 138 (305)
| +.-..|.||||.||-+.
T Consensus 86 R-------------~~p~D~~DLNR~Fpg~~ 103 (316)
T cd06252 86 R-------------TSPIDGGNLNRVFPGDP 103 (316)
T ss_pred c-------------cCCCCCCcHHhhCCCCC
Confidence 2 11124689999999653
No 57
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=99.01 E-value=9.5e-10 Score=103.50 Aligned_cols=101 Identities=21% Similarity=0.244 Sum_probs=72.8
Q ss_pred EeeeccCC--ceeeEEEEcCCCCCCCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcCCChHHHHhhccceEEEEec
Q psy17404 20 SVGQSVEK--RELWVLELSTHPGVHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPS 97 (305)
Q Consensus 20 ~iG~S~eG--r~i~~~~i~~~~~~~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d~~~~~ll~~~~~~iiP~ 97 (305)
.++++..| +.|++.+|+.. . ..|+|+|+|++||+|+.|..++.+++++|...... ..| +-+|++||+
T Consensus 4 ~~~~~~~g~~~~ipv~~~~g~-~----~gp~v~i~agiHGdE~~G~~~~~~L~~~l~~~~~~-----~~l-~G~v~ivP~ 72 (359)
T cd06250 4 PLPSPAPGTERELTVFRFGGA-G----AGPKVYIQASLHADELPGMLVLHHLIELLKKLEAE-----GRI-LGEITLVPV 72 (359)
T ss_pred ecccCCCCCeEEEEEEEEeCC-C----CCCEEEEEeccccCchHHHHHHHHHHHHHhhhccc-----ccc-CceEEEEeC
Confidence 34555555 67888888752 1 36999999999999999999999999999864211 123 347999999
Q ss_pred cCchhHHHHHHhhhhhhhccccccccceecccccceecCCC
Q psy17404 98 MNPDGYERAREAVEKWLQDIPFVLSANLHGGSLVANYPYDD 138 (305)
Q Consensus 98 ~NPDG~~~~~~~~~~~~k~~~~~~~~~~~g~dlnrnyp~~~ 138 (305)
+||+|+...++ .|...| .....|.|+||.||-.-
T Consensus 73 ~Np~g~~~~~~---~~~~~R----~~p~dg~dlNR~FPg~~ 106 (359)
T cd06250 73 ANPIGLNQRLG---GFHLGR----FDLASGTNFNRDFPDLA 106 (359)
T ss_pred cChHHHHhhcc---cccccc----ccCCCCCccCcCCCCcc
Confidence 99999987432 222111 12246899999999763
No 58
>KOG3641|consensus
Probab=99.00 E-value=2.9e-10 Score=108.58 Aligned_cols=117 Identities=15% Similarity=0.162 Sum_probs=95.6
Q ss_pred HHHHHHHHHhCC--CcEEEEEeeeccCCceeeEEEEcCCCCCCCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcCC
Q psy17404 2 QAELEHITKNYP--NLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKI 79 (305)
Q Consensus 2 ~~~l~~l~~~~p--~~v~~~~iG~S~eGr~i~~~~i~~~~~~~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~ 79 (305)
.-+|+.|+...+ =..+...+++|..||++.+++|... . -..+|.|++.+.+|..|.-+..++-.+++.|+.+
T Consensus 386 ~~hLn~les~~~~~~yfr~dVl~~tl~g~~~~l~tI~~a-e--~~~~~~IfLSaRVHpgeTnsSwvmkGilefl~s~--- 459 (650)
T KOG3641|consen 386 QCHLNGLESPKNPAFYFRYDVLLFTLVGRAMALATIDMA-E--CAPRPVIFLSARVHPGETNSSWVMKGILEFLVSN--- 459 (650)
T ss_pred HhhhhcccCCCCcCcccchheeeeeecCCccceEEeeHh-h--cCCcceEEEecccCCCCCcHHHHHHHHHHHhhcC---
Confidence 345666766544 2456778999999999999999842 1 1369999999999999999999999999999985
Q ss_pred ChHHHHhhccceEEEEeccCchhHHHHHHhhhhhhhccccccccceecccccceecCC
Q psy17404 80 DDRVTRMLQTTRIHLMPSMNPDGYERAREAVEKWLQDIPFVLSANLHGGSLVANYPYD 137 (305)
Q Consensus 80 d~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~~~~~k~~~~~~~~~~~g~dlnrnyp~~ 137 (305)
++....|.+.+.+.|+||+||||.-... -+.++.|-||||.|.-.
T Consensus 460 ~p~aq~LRe~~vFKI~PMLNPDGV~~Gn-------------yRCSL~G~DLNR~w~tp 504 (650)
T KOG3641|consen 460 SPLAQGLRESYVFKIVPMLNPDGVIVGN-------------YRCSLMGLDLNRMWSTP 504 (650)
T ss_pred CcHHHhhhhheeEecccccCCCceeccc-------------ceeccccchhhhhcCCC
Confidence 7777889999999999999999998753 24678899999988544
No 59
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=98.96 E-value=1.3e-08 Score=94.53 Aligned_cols=213 Identities=16% Similarity=0.153 Sum_probs=115.8
Q ss_pred eeeEEEEcCCCCCCCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcCCChHHHHhhccceEEEEeccCchhHHHHHH
Q psy17404 29 ELWVLELSTHPGVHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYERARE 108 (305)
Q Consensus 29 ~i~~~~i~~~~~~~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d~~~~~ll~~~~~~iiP~~NPDG~~~~~~ 108 (305)
.|.+..|..+ ..|+++|+||+||+|+.|..++.+|+++|-.. . + +=++++||++||-|+....|
T Consensus 36 ~ipv~vi~~~------~gp~v~i~agvHGdE~~G~~~~~~L~~~l~~~--------~-l-~G~v~~vP~~N~~g~~~~~r 99 (325)
T TIGR02994 36 MIPITVIKNG------IGPTALLTGGNHGDEYEGPIALFELARTLDAE--------D-V-SGRIIIVPAMNYPAFRAGTR 99 (325)
T ss_pred EeeEEEEeCC------CCCEEEEEeccCCCchHHHHHHHHHHhhCChh--------h-C-cEEEEEEcCCCHHHHHhhCC
Confidence 4555555432 25899999999999999999999999987331 1 2 45699999999999876432
Q ss_pred hhhhhhhccccccccceecccccceecCCCCCCCCCCCCCCCCcHHHHHHHHHHH-------HhhcCccC--CCCC-CC-
Q psy17404 109 AVEKWLQDIPFVLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLLASSY-------ANAHKKMY--KDPG-CP- 177 (305)
Q Consensus 109 ~~~~~~k~~~~~~~~~~~g~dlnrnyp~~~~~~~~p~~~~~~pe~~~~~~l~~~y-------~~~h~~~~--~~~~-~~- 177 (305)
. .-..|.|+||.||-+-. .+...+....+-... .++|..-. ...| +.
T Consensus 100 ---~----------~p~d~~nlNR~fPG~~~---------gs~~~riA~~l~~~l~~~aD~~iDlHs~~~~~~~~P~v~~ 157 (325)
T TIGR02994 100 ---T----------SPIDRGNLNRSFPGRPD---------GTVTEKIADYFQRHLLPLADIVLDFHSGGKTLDFVPFAAA 157 (325)
T ss_pred ---C----------CCCCCCccCCCCCCCCC---------CCHHHHHHHHHHHhHHhhCCEEEECCCCCccccccceEEE
Confidence 1 11358899999994311 122233322221111 12342110 0001 00
Q ss_pred CCCC------------CCCCCccccCcee---eeccCccchhhhhhcceeEEEEEecCCCCCCCCCchhHHHhhhhhHHH
Q psy17404 178 EYPE------------ENFPGGIVNGAQW---YVVSGGMQDYNYIHANTLEITLELGCYKFPPAKDLPSYWEDNLPALLS 242 (305)
Q Consensus 178 ~~~~------------~~~~~g~~~g~~~---Y~~~G~~~Dw~y~~~~~~~~tiEl~~~~~pp~~~i~~~~~en~~~l~~ 242 (305)
+... ..|... ..+ -..+|++-|++-...+++++|+|++..+.-..+ ..+.-.++++.
T Consensus 158 ~~~~~~~~~~~~~~lA~~fg~p----~~~~~~~~~~~gs~~~a~~~~Gip~i~~E~Gg~~~~~~~----~~~~~~~gi~~ 229 (325)
T TIGR02994 158 HILPDKAQEAKCFDAVAAFAAP----YSMKMLEIDSVGMYDTAAEEMGKVFVTTELGGGGTASAR----TIKIAKRGVRN 229 (325)
T ss_pred ecCCcchhhHHHHHHHHhcCCC----eEEEeccCCCCccHHHHHHHCCCeEEEEeCCCCCcCCHH----HHHHHHHHHHH
Confidence 0000 011111 111 113467888887777889999999986532222 33445677777
Q ss_pred HHhhhccceeeEEECcCCCCccccEEEEeeeeEeEeeCCCceEEEecCCce
Q psy17404 243 YIEQVHRGVAGFVKGREGEGVAEASIAVEGLGHVVYSAQDGDYWRLLAPGN 293 (305)
Q Consensus 243 ~~~~~~~gi~G~v~d~~g~pi~~A~i~i~~~~~~~~t~~~G~y~~~l~~G~ 293 (305)
++.+.- -+.|.+ .+.+...+.+.....-+.+...|.|.....+|.
T Consensus 230 vL~~lg-ml~~~~-----~~~~~~~~~~~~~~~~v~Ap~~Gi~~~~v~~G~ 274 (325)
T TIGR02994 230 VLRHAG-ILKGEL-----EIAPTIWLDMPSDDCFIFAEDDGLIEFMIDLGD 274 (325)
T ss_pred HHHHcC-CcCCCC-----CCCCccceecCCCCeEEEcCCCeEEEEecCCCC
Confidence 775532 133221 111111222222222356777888866565554
No 60
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=98.75 E-value=2.1e-08 Score=92.00 Aligned_cols=87 Identities=23% Similarity=0.301 Sum_probs=64.9
Q ss_pred eeccCCce--eeEEEEcCCCCCCCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcCCChHHHHhhccceEEEEeccC
Q psy17404 22 GQSVEKRE--LWVLELSTHPGVHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMN 99 (305)
Q Consensus 22 G~S~eGr~--i~~~~i~~~~~~~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d~~~~~ll~~~~~~iiP~~N 99 (305)
++...|.+ |.++.|.... ..|+|+++|++||+|..|..++.+++++|... .+ +-+++++|++|
T Consensus 3 ~~~~~g~~~~~pv~~~~g~~-----~gp~v~i~agvHG~E~~G~~~~~~l~~~l~~~---------~~-~g~~~~vp~~N 67 (293)
T cd06255 3 GTMADGSAVALPVTILRGAE-----PGPTLWLHAQVHGNEYNGTQAIVDLYRSLDPA---------AL-KGRLVALPTAN 67 (293)
T ss_pred ccCCCCCccceeEEEEeCCC-----CCCEEEEEcccCCCcHHHHHHHHHHHHhCCHh---------hc-CCeEEEEeCcC
Confidence 44555554 6667775421 36899999999999999999999999887431 13 34778999999
Q ss_pred chhHHHHHHhhhhhhhccccccccc-eecccccceecCC
Q psy17404 100 PDGYERAREAVEKWLQDIPFVLSAN-LHGGSLVANYPYD 137 (305)
Q Consensus 100 PDG~~~~~~~~~~~~k~~~~~~~~~-~~g~dlnrnyp~~ 137 (305)
|.|+....| .+ ..+.||||.||-+
T Consensus 68 ~~a~~~~~R--------------~~p~d~~dlNR~fpg~ 92 (293)
T cd06255 68 PTALDARTR--------------MSPFDELDLNRTFPGN 92 (293)
T ss_pred HHHHHhhcc--------------cCCCCCCCcccCCCCC
Confidence 999988543 12 3678999999954
No 61
>cd06230 M14_ASTE_ASPA_like The Peptidase M14 Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily belongs to the M14 family of metallocarboxypeptidases (MCPs), and includes ASTE, which catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) which cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=98.65 E-value=2.5e-08 Score=89.59 Aligned_cols=82 Identities=23% Similarity=0.298 Sum_probs=60.4
Q ss_pred EEEEecccCCchhHHHHHHHHHHHHHHHcCCChHHHHhhccceEEEEeccCchhHHHHHHhhhhhhhccccccccceecc
Q psy17404 49 FKYVANMHGNEVVGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYERAREAVEKWLQDIPFVLSANLHGG 128 (305)
Q Consensus 49 v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~~~~~k~~~~~~~~~~~g~ 128 (305)
|+|+||+||+|..|..++..++++|.... . -+.+++++|++||+|++...| ... .
T Consensus 1 v~i~agiHG~E~~g~~~~~~l~~~~~~~~--------~-l~g~v~~vp~~N~~g~~~~~R-------------~~~---~ 55 (252)
T cd06230 1 VAVVGGVHGNEPCGVQAIRRLLAELDEGQ--------A-LRGPVKLVPAANPLALEAGQR-------------YLD---R 55 (252)
T ss_pred CEEEcccCCCcHHHHHHHHHHHHHHhhhc--------c-cccEEEEEeCcCHHHHHhCCC-------------CCC---c
Confidence 58999999999999999999999887631 2 356889999999999987443 111 8
Q ss_pred cccceecCCCCCCCCCCCCCCCCcHHHHHHHHHHH
Q psy17404 129 SLVANYPYDDNQAMKPQVDSPTPDDSIFKLLASSY 163 (305)
Q Consensus 129 dlnrnyp~~~~~~~~p~~~~~~pe~~~~~~l~~~y 163 (305)
||||+||-+... .+++.+..+.+...+
T Consensus 56 DLNR~fpg~~~~--------~~~~~~~a~~l~~~i 82 (252)
T cd06230 56 DLNRIFPGDPDS--------GTYEDRLAAELCPEL 82 (252)
T ss_pred CCCCCCCCCCCC--------CCHHHHHHHHHHHHH
Confidence 999999965321 245665555554433
No 62
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=98.51 E-value=1.3e-07 Score=86.65 Aligned_cols=69 Identities=26% Similarity=0.388 Sum_probs=54.8
Q ss_pred CCeEEEEecccCCchhHHHHHHHHHHHHHHHcCCChHHHHhhccceEEEEeccCchhHHHHHHhhhhhhhccccccccce
Q psy17404 46 VPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYERAREAVEKWLQDIPFVLSANL 125 (305)
Q Consensus 46 kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~~~~~k~~~~~~~~~~ 125 (305)
-|+++|+||+||+|+.|..++.+++++|... + -+-+++++|++||.|+....| ....
T Consensus 2 Gp~l~i~agvHGnE~~G~~a~~~L~~~l~~~--------~--~~G~~~~vp~~N~~a~~~~~R-------------~~~~ 58 (292)
T PF04952_consen 2 GPTLLITAGVHGNEYNGIEALQRLLRELDPA--------D--LSGTVIIVPVANPPAFRQGTR-------------FVPI 58 (292)
T ss_dssp S-EEEEEE-SSTTBCHHHHHHHHHHHHHHGG--------G--CTCEEEEEEESSHHHHHHTSS-------------SSTT
T ss_pred CCEEEEEcCcccChHHHHHHHHHHHhcchhc--------c--cCCceEEEEEeCHHHHHhccc-------------cCCC
Confidence 4889999999999999999999999988652 1 357889999999999998542 1235
Q ss_pred ecccccceecCC
Q psy17404 126 HGGSLVANYPYD 137 (305)
Q Consensus 126 ~g~dlnrnyp~~ 137 (305)
-|.||||.||-.
T Consensus 59 d~~dLNR~Fpg~ 70 (292)
T PF04952_consen 59 DGRDLNRCFPGD 70 (292)
T ss_dssp TSSBGGGSTTHH
T ss_pred CCCCHHHhCCCC
Confidence 679999999955
No 63
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=98.35 E-value=2.1e-06 Score=68.80 Aligned_cols=54 Identities=22% Similarity=0.438 Sum_probs=48.1
Q ss_pred eeeEEECcCCCCccccEEEEee----------eeEeEeeCCCceEEEecCCceEEEEEEecCcc
Q psy17404 251 VAGFVKGREGEGVAEASIAVEG----------LGHVVYSAQDGDYWRLLAPGNYTLHVSAPGED 304 (305)
Q Consensus 251 i~G~v~d~~g~pi~~A~i~i~~----------~~~~~~t~~~G~y~~~l~~G~y~l~vs~~Gy~ 304 (305)
|+|..+|..|+|+++++|.++- +.....|+++|.|...+.||.|.|.+...|+.
T Consensus 5 ISGvL~dg~G~pv~g~~I~L~A~~tS~~Vv~~t~as~~t~~~G~Ys~~~epG~Y~V~l~~~g~~ 68 (134)
T PF08400_consen 5 ISGVLKDGAGKPVPGCTITLKARRTSSTVVVGTVASVVTGEAGEYSFDVEPGVYRVTLKVEGRP 68 (134)
T ss_pred EEEEEeCCCCCcCCCCEEEEEEccCchheEEEEEEEEEcCCCceEEEEecCCeEEEEEEECCCC
Confidence 8999999999999999999983 23345789999999999999999999998875
No 64
>PRK02259 aspartoacylase; Provisional
Probab=98.04 E-value=8.3e-06 Score=74.72 Aligned_cols=88 Identities=20% Similarity=0.108 Sum_probs=58.5
Q ss_pred CCeEEEEecccCCchhHHHHHHHHHHHHHHHcCCChHHHHhhccceEEEEeccCchhHHHHHHhhhhhhhccccccccce
Q psy17404 46 VPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYERAREAVEKWLQDIPFVLSANL 125 (305)
Q Consensus 46 kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~~~~~k~~~~~~~~~~ 125 (305)
-++|+++||+||+|..|..++.++++++... + + .-..+++|+.||.++....| +.
T Consensus 2 ~~~v~i~aGvHGnE~~Gv~~v~~l~~~~~~~--------~-~-~g~~i~~~i~Np~A~~~~~R-------------y~-- 56 (288)
T PRK02259 2 INRVAIVGGTHGNEITGIYLVKKWQQQPNLI--------N-R-KGLEVQTVIGNPEAIEAGRR-------------YI-- 56 (288)
T ss_pred CcEEEEEcCccCChhHHHHHHHHHHhccccc--------c-c-CccEEEEEeeCHHHHHhCCC-------------CC--
Confidence 3679999999999999999888888765331 1 2 33457889999999987433 11
Q ss_pred ecccccceecCCCCCCCCCCCCCCCCcHHHHHHHHHHH
Q psy17404 126 HGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLLASSY 163 (305)
Q Consensus 126 ~g~dlnrnyp~~~~~~~~p~~~~~~pe~~~~~~l~~~y 163 (305)
..||||.||-+..... ..+..|.+..+.|...+
T Consensus 57 -~~DLNR~Fpg~~~~~~----~~~~~e~~~A~~l~~~~ 89 (288)
T PRK02259 57 -DRDLNRSFRLDLLQNP----DLSGYEQLRAKELVQQL 89 (288)
T ss_pred -cccCCCCCCCccccCC----CCCCHHHHHHHHHHHHH
Confidence 2699999996543211 01234555555555544
No 65
>PRK05324 succinylglutamate desuccinylase; Provisional
Probab=98.02 E-value=1.2e-05 Score=74.96 Aligned_cols=70 Identities=21% Similarity=0.210 Sum_probs=52.8
Q ss_pred CCCeEEEEecccCCchhHHHHHHHHHHHHHHHcCCChHHHHhhccceEEEEeccCchhHHHHHHhhhhhhhccccccccc
Q psy17404 45 GVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYERAREAVEKWLQDIPFVLSAN 124 (305)
Q Consensus 45 ~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~~~~~k~~~~~~~~~ 124 (305)
..|.|+|+||+||+|..|.+++.+++++|... . +......++|+.||.++....| + .
T Consensus 46 ~gp~v~IsaGvHGNE~~Gi~~l~~Ll~~l~~~--------~-~~~~~~v~~i~~Np~A~~~~~R----------~---v- 102 (329)
T PRK05324 46 STKALVLSAGIHGNETAPIELLDQLVRDLLAG--------E-LPLRARLLVILGNPPAMRAGKR----------Y---L- 102 (329)
T ss_pred CCCeEEEECCcccCcHHHHHHHHHHHHhhhcc--------c-cccCceEEEEecCHHHHHhCcc----------c---C-
Confidence 57899999999999999999999999988752 1 1112225566999999987443 1 1
Q ss_pred eecccccceecCCCC
Q psy17404 125 LHGGSLVANYPYDDN 139 (305)
Q Consensus 125 ~~g~dlnrnyp~~~~ 139 (305)
..||||.||-++.
T Consensus 103 --d~DLNR~FpG~~~ 115 (329)
T PRK05324 103 --DEDLNRLFGGRHQ 115 (329)
T ss_pred --CCCcccCCCCCcC
Confidence 3599999997654
No 66
>cd03855 M14_ASTE Peptidase M14 Succinylglutamate desuccinylase (ASTE, also known as N-succinyl-L-glutamate amidohydrolase, N2-succinylglutamate desuccinylase, and SGDS; EC 3.5.1.96) belongs to the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily of the M14 family of metallocarboxypeptidases. This group includes succinylglutamate desuccinylase that catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway. It hydrolyzes N-succinyl-L-glutamate to succinate and L-glutamate.
Probab=97.99 E-value=1.3e-05 Score=74.52 Aligned_cols=70 Identities=20% Similarity=0.169 Sum_probs=53.1
Q ss_pred CCCeEEEEecccCCchhHHHHHHHHHHHHHHHcCCChHHHHhhccceEEEEeccCchhHHHHHHhhhhhhhccccccccc
Q psy17404 45 GVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYERAREAVEKWLQDIPFVLSAN 124 (305)
Q Consensus 45 ~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~~~~~k~~~~~~~~~ 124 (305)
..|.|+|+||+||+|..|.+++.+++++|... . +......++|+.||.++....| +.
T Consensus 41 ~gp~v~IsaGvHGNE~~Gi~~l~~ll~~l~~~--------~-l~~~~~v~~~~~Np~A~~~~~R-------------~~- 97 (322)
T cd03855 41 ATKAIVISAGVHGNETAPIEILNQLIKDLLAG--------E-LPLAHRLLFIFGNPPAMRAGER-------------FV- 97 (322)
T ss_pred CCCeEEEEccccCCchhHHHHHHHHHHhhhhc--------c-ccCCeEEEEEeeCHHHHHhCcc-------------cC-
Confidence 46899999999999999999999999988763 1 2222335677999999987443 11
Q ss_pred eecccccceecCCCC
Q psy17404 125 LHGGSLVANYPYDDN 139 (305)
Q Consensus 125 ~~g~dlnrnyp~~~~ 139 (305)
..||||.||-+..
T Consensus 98 --d~DLNR~FpG~~~ 110 (322)
T cd03855 98 --DENLNRLFSGRHQ 110 (322)
T ss_pred --CCCccCCCCCCcc
Confidence 2599999996643
No 67
>cd06909 M14_ASPA Aspartoacylase (ASPA) belongs to the Succinylglutamate desuccinylase/aspartoacylase subfamily of the M14 family of metallocarboxypeptidases. ASPA (also known as aminoacylase 2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=97.95 E-value=1.8e-05 Score=72.23 Aligned_cols=87 Identities=17% Similarity=0.071 Sum_probs=56.6
Q ss_pred CeEEEEecccCCchhHHHHHHHHHHHHHHHcCCChHHHHhhccceEEEEeccCchhHHHHHHhhhhhhhcccccccccee
Q psy17404 47 PEFKYVANMHGNEVVGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYERAREAVEKWLQDIPFVLSANLH 126 (305)
Q Consensus 47 p~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~~~~~k~~~~~~~~~~~ 126 (305)
++|+|+||+||+|..|+.++..+++++... .......++|+.||.+++...| ..
T Consensus 1 ~~v~I~aGvHGnE~~Gv~~v~~l~~~~~~~----------~~~~~~v~~~i~Np~A~~~~~R----------------y~ 54 (282)
T cd06909 1 KRVAIVGGTHGNELTGVYLVKKWLQQPELI----------QRPSLEVHPVIANPRAVEACRR----------------YI 54 (282)
T ss_pred CeEEEEcCccCChHHHHHHHHHHHhccccc----------ccCCeEEEEEecCHHHHHhCCc----------------cC
Confidence 369999999999999999888888765331 1233445667789999886432 11
Q ss_pred cccccceecCCCCCCCCCCCCCCCCcHHHHHHHHHHH
Q psy17404 127 GGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLLASSY 163 (305)
Q Consensus 127 g~dlnrnyp~~~~~~~~p~~~~~~pe~~~~~~l~~~y 163 (305)
..||||.||-+...... ...+|.+..+.+...+
T Consensus 55 d~DLNR~Fpg~~~~~~~----~~~~e~~~A~~l~~~l 87 (282)
T cd06909 55 DTDLNRCFTLENLSNSE----LLPYEVKRAKELNQKL 87 (282)
T ss_pred CCCCCCCCCCCccCCCC----CCCHHHHHHHHHHHHH
Confidence 37999999976542110 1234555555554433
No 68
>TIGR03242 arg_catab_astE succinylglutamate desuccinylase. Members of this protein family are succinylglutamate desuccinylase, the fifth and final enzyme of the arginine succinyltransferase (AST) pathway for arginine catabolism. This model excludes the related protein aspartoacylase.
Probab=97.95 E-value=1.1e-05 Score=74.93 Aligned_cols=69 Identities=17% Similarity=0.162 Sum_probs=51.5
Q ss_pred CCCeEEEEecccCCchhHHHHHHHHHHHHHHHcCCChHHHHhhccceEEEEeccCchhHHHHHHhhhhhhhccccccccc
Q psy17404 45 GVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYERAREAVEKWLQDIPFVLSAN 124 (305)
Q Consensus 45 ~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~~~~~k~~~~~~~~~ 124 (305)
.-|.|+|+||+||+|..|..++..+++++... .+.-..++.+ ++.||.++....|
T Consensus 40 ~gp~v~IsaGvHGNE~~Gi~~l~~ll~~l~~~--------~~~~~~~l~~-i~~Np~A~~~~~R---------------- 94 (319)
T TIGR03242 40 PQKSLVISAGIHGNETAPIEILEQLLGDIAAG--------KLPLRVRLLV-ILGNPPAMRTGKR---------------- 94 (319)
T ss_pred CCCEEEEEcCcccchHHHHHHHHHHHhhhhhc--------cccCCceEEE-EEcCHHHHHhCcc----------------
Confidence 46889999999999999999999999987652 1222344544 4799999987543
Q ss_pred eecccccceecCCC
Q psy17404 125 LHGGSLVANYPYDD 138 (305)
Q Consensus 125 ~~g~dlnrnyp~~~ 138 (305)
....||||.||-+.
T Consensus 95 ~~~~DLNR~FpG~~ 108 (319)
T TIGR03242 95 YLHDDLNRMFGGRY 108 (319)
T ss_pred cCCCCccCCCCCcc
Confidence 11259999999654
No 69
>COG3608 Predicted deacylase [General function prediction only]
Probab=97.92 E-value=2.1e-05 Score=72.39 Aligned_cols=77 Identities=21% Similarity=0.242 Sum_probs=58.0
Q ss_pred eeEEEEcCCCCCCCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcCCChHHHHhhccceEEEEeccCchhHHHHHHh
Q psy17404 30 LWVLELSTHPGVHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYERAREA 109 (305)
Q Consensus 30 i~~~~i~~~~~~~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d~~~~~ll~~~~~~iiP~~NPDG~~~~~~~ 109 (305)
+.++.++++ .-|+++++++.||+|.-|+.++.+|+.+|-.. ++ .=+++|||.+||-+.+...|
T Consensus 38 ~~~~~~~~g------~gp~~~l~ag~HGdEl~G~~al~~Li~~L~~a--------~i--~GtV~iVP~aN~~a~~~~~R- 100 (331)
T COG3608 38 TPVFVFGNG------PGPSVLLQAGVHGDELPGVIALRRLIPALDPA--------DI--SGTVIIVPIANPPAFEAQGR- 100 (331)
T ss_pred ceEEEecCC------CCCEEEEEecccccccchHHHHHHHHHhcCHh--------hc--CceEEEEeccCHHHHHhhcc-
Confidence 345555554 36899999999999999999999999998542 22 45889999999887777443
Q ss_pred hhhhhhccccccccceecccccceec
Q psy17404 110 VEKWLQDIPFVLSANLHGGSLVANYP 135 (305)
Q Consensus 110 ~~~~~k~~~~~~~~~~~g~dlnrnyp 135 (305)
.| -..+.++||.||
T Consensus 101 --~~----------p~d~~N~NR~fP 114 (331)
T COG3608 101 --FS----------PGDDTNLNRAFP 114 (331)
T ss_pred --cC----------CCCCCcccccCC
Confidence 11 124577889999
No 70
>cd06256 M14_ASTE_ASPA_like_6 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=97.81 E-value=2.1e-05 Score=73.24 Aligned_cols=66 Identities=18% Similarity=0.121 Sum_probs=49.2
Q ss_pred CeEEEEecccCCchhHHHHHHHHHHHHHHHcCCChHHHHhhccceEEEEeccCchhHHHHHHhhhhhhhcccccccccee
Q psy17404 47 PEFKYVANMHGNEVVGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYERAREAVEKWLQDIPFVLSANLH 126 (305)
Q Consensus 47 p~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~~~~~k~~~~~~~~~~~ 126 (305)
|.|+|+||+||+|..|..++.++++++... . +... .++++.||-++....| +.. .
T Consensus 35 p~v~I~aGvHGNE~~Gi~al~~ll~~~~~~--------~-~~~~--~~l~i~Np~A~~~~~R-------------~~~-d 89 (327)
T cd06256 35 PPLFVSTLLHGNEPTGLQAVQRLLKALEAR--------P-LPRS--LLLFIGNVAAALAGVR-------------RLD-G 89 (327)
T ss_pred CeEEEEccccCCcHHHHHHHHHHHHhCChh--------h-cCCc--EEEEEeCHHHHHhCcc-------------cCC-C
Confidence 899999999999999999999888876431 1 3333 4455799999987433 112 3
Q ss_pred cccccceecCC
Q psy17404 127 GGSLVANYPYD 137 (305)
Q Consensus 127 g~dlnrnyp~~ 137 (305)
+.||||.||-+
T Consensus 90 ~~DLNR~Fpg~ 100 (327)
T cd06256 90 QPDYNRCWPGP 100 (327)
T ss_pred CCCccCCCCCC
Confidence 67999999955
No 71
>PRK15036 hydroxyisourate hydrolase; Provisional
Probab=97.72 E-value=6.9e-05 Score=60.85 Aligned_cols=54 Identities=13% Similarity=0.226 Sum_probs=46.3
Q ss_pred ceeeEEEC-cCCCCccccEEEEeeee-------EeEeeCCCceEEE-----ecCCceEEEEEEecCc
Q psy17404 250 GVAGFVKG-REGEGVAEASIAVEGLG-------HVVYSAQDGDYWR-----LLAPGNYTLHVSAPGE 303 (305)
Q Consensus 250 gi~G~v~d-~~g~pi~~A~i~i~~~~-------~~~~t~~~G~y~~-----~l~~G~y~l~vs~~Gy 303 (305)
.|++.|.| .+|.|.++..|.+.... ....||.||+|.. .+++|.|+|++...+|
T Consensus 28 ~Is~HVLDt~~G~PA~gV~V~L~~~~~~~w~~l~~~~Td~dGR~~~l~~~~~~~~G~Y~L~F~t~~Y 94 (137)
T PRK15036 28 ILSVHILNQQTGKPAADVTVTLEKKADNGWLQLNTAKTDKDGRIKALWPEQTATTGDYRVVFKTGDY 94 (137)
T ss_pred CeEEEEEeCCCCcCCCCCEEEEEEccCCceEEEEEEEECCCCCCccccCcccCCCeeEEEEEEcchh
Confidence 49999999 89999999999998543 4578999999943 2788999999998877
No 72
>cd06910 M14_ASTE_ASPA_like_7 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=97.56 E-value=7.5e-05 Score=67.88 Aligned_cols=71 Identities=21% Similarity=0.190 Sum_probs=48.3
Q ss_pred CeEEEEecccCCchhHHHHHHHHHHHHHHHcCCChHHHHhhccceEEEEeccCchhHHHHHHhhhhhhhcccccccccee
Q psy17404 47 PEFKYVANMHGNEVVGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYERAREAVEKWLQDIPFVLSANLH 126 (305)
Q Consensus 47 p~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~~~~~k~~~~~~~~~~~ 126 (305)
|+|+|+|++||+|..|.+++..+++. ++ . .|.. ++.++ ++||-++....+ . .+. ..-..
T Consensus 1 P~v~isagvHGnE~~Gi~al~~l~~~-------~~--~-~l~G-~li~~-~~N~~A~~~~~~---~-----~p~-~~R~~ 59 (272)
T cd06910 1 PHVMINALVHGNEICGAIALDALLRE-------GL--R-PRRG-RLTLA-FANVAAYARFDP---N-----NPT-ASRFV 59 (272)
T ss_pred CEEEEEcCcccChHHHHHHHHHHHhC-------cc--c-ccCC-CEEEE-EECHHHHHhccc---C-----CCc-ccccC
Confidence 78999999999999999999998863 11 1 1333 44455 899999876322 0 110 11133
Q ss_pred cccccceecCCC
Q psy17404 127 GGSLVANYPYDD 138 (305)
Q Consensus 127 g~dlnrnyp~~~ 138 (305)
+.||||.||=++
T Consensus 60 ~~dLNR~Fpg~~ 71 (272)
T cd06910 60 DEDMNRVWSPDV 71 (272)
T ss_pred CCCcCCCCCCcc
Confidence 469999999664
No 73
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=97.47 E-value=0.00029 Score=57.97 Aligned_cols=54 Identities=30% Similarity=0.490 Sum_probs=44.1
Q ss_pred ceeeEEECcCCCCccccEEEEeeee--------------------EeEeeCCCceE-EEecCCceEE--------EEEEe
Q psy17404 250 GVAGFVKGREGEGVAEASIAVEGLG--------------------HVVYSAQDGDY-WRLLAPGNYT--------LHVSA 300 (305)
Q Consensus 250 gi~G~v~d~~g~pi~~A~i~i~~~~--------------------~~~~t~~~G~y-~~~l~~G~y~--------l~vs~ 300 (305)
-+.|+|+|.+|.|+++|.|.|-... -...||++|.| +..+.||.|. +.|.+
T Consensus 13 ~l~G~V~D~~g~pv~~A~VeiW~~d~~G~Y~~~~~~~~~~~~~~rg~~~Td~~G~y~f~ti~Pg~Y~~~R~~HiH~~V~~ 92 (146)
T cd00421 13 TLTGTVLDGDGCPVPDALVEIWQADADGRYSGQDDSGLDPEFFLRGRQITDADGRYRFRTIKPGPYPIGRPPHIHFKVFA 92 (146)
T ss_pred EEEEEEECCCCCCCCCcEEEEEecCCCCccCCcCccccCCCCCCEEEEEECCCcCEEEEEEcCCCCCCCCCCEEEEEEEC
Confidence 3899999999999999999996211 14678999999 5669999998 67777
Q ss_pred cCc
Q psy17404 301 PGE 303 (305)
Q Consensus 301 ~Gy 303 (305)
.||
T Consensus 93 ~g~ 95 (146)
T cd00421 93 PGY 95 (146)
T ss_pred CCc
Confidence 776
No 74
>PF10994 DUF2817: Protein of unknown function (DUF2817); InterPro: IPR021259 This family of proteins has no known function.
Probab=97.46 E-value=0.00034 Score=65.31 Aligned_cols=104 Identities=16% Similarity=0.142 Sum_probs=71.4
Q ss_pred HHHHHHHhCCCcEEEEEeee-ccCCc--eeeEEEEcCCCCCCCCCCCeEEEEecccCCc-hhHHHHHHHHHHHHHHHcCC
Q psy17404 4 ELEHITKNYPNLTRLYSVGQ-SVEKR--ELWVLELSTHPGVHKPGVPEFKYVANMHGNE-VVGRELLLLLAQYLCQNYKI 79 (305)
Q Consensus 4 ~l~~l~~~~p~~v~~~~iG~-S~eGr--~i~~~~i~~~~~~~~~~kp~v~i~~~~Hg~E-~~~~~~~l~~~~~L~~~y~~ 79 (305)
|+.... +..-.++...+-. -.+|. -|.+..++.. . .+..+++++|.||=| ..|+.+-+.+++.+..
T Consensus 12 Fl~aA~-~~ga~~~~~~~p~~G~~ge~L~~Dva~lg~~-~----a~~lLv~~SGtHGVEGf~GSaiQ~~~L~~~~~---- 81 (341)
T PF10994_consen 12 FLAAAE-AAGAKLESYPHPLRGPDGEDLATDVAWLGPK-D----ASRLLVLTSGTHGVEGFAGSAIQIALLREDLA---- 81 (341)
T ss_pred HHHHHH-HcCCcceeeeCCCCCCCCCcceeEEEEecCC-C----CCeEEEEEecCCcccccccHHHHHHHHHcccc----
Confidence 344333 3443344433322 23444 4667777763 1 356788889999999 6677777788877522
Q ss_pred ChHHHHhhccceEEEEeccCchhHHHHHHhhhhhhhccccccccceecccccceec
Q psy17404 80 DDRVTRMLQTTRIHLMPSMNPDGYERAREAVEKWLQDIPFVLSANLHGGSLVANYP 135 (305)
Q Consensus 80 d~~~~~ll~~~~~~iiP~~NPDG~~~~~~~~~~~~k~~~~~~~~~~~g~dlnrnyp 135 (305)
..+.+++.+.+|=.+||-|+.+.+| .|-+.|||||||=
T Consensus 82 ----~~~~~~~avllVHAlNPyGfa~~RR--------------~nE~NVDLNRNfl 119 (341)
T PF10994_consen 82 ----RSLPAGVAVLLVHALNPYGFAWLRR--------------VNENNVDLNRNFL 119 (341)
T ss_pred ----cccCCCCeEEEEEccCccccceeec--------------cCCcCcCcccccC
Confidence 3456789999999999999998553 6778899999996
No 75
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=97.19 E-value=0.002 Score=46.99 Aligned_cols=51 Identities=29% Similarity=0.513 Sum_probs=44.4
Q ss_pred eeeEEECcCCCCccccEEEEee----eeEeEeeCCCceEEEecCCceEEEEEEecC
Q psy17404 251 VAGFVKGREGEGVAEASIAVEG----LGHVVYSAQDGDYWRLLAPGNYTLHVSAPG 302 (305)
Q Consensus 251 i~G~v~d~~g~pi~~A~i~i~~----~~~~~~t~~~G~y~~~l~~G~y~l~vs~~G 302 (305)
|.|+|+ .+|+|+++|-|.+.. ....+.|..+|.|..-..||+.+|.+-+.+
T Consensus 10 ItG~V~-~~G~Pv~gAyVRLLD~sgEFtaEvvts~~G~FRFfaapG~WtvRal~~~ 64 (85)
T PF07210_consen 10 ITGRVT-RDGEPVGGAYVRLLDSSGEFTAEVVTSATGDFRFFAAPGSWTVRALSRG 64 (85)
T ss_pred EEEEEe-cCCcCCCCeEEEEEcCCCCeEEEEEecCCccEEEEeCCCceEEEEEccC
Confidence 899999 999999999999973 245678999999998899999999886553
No 76
>COG2988 Succinylglutamate desuccinylase [Amino acid transport and metabolism]
Probab=97.07 E-value=0.0045 Score=55.68 Aligned_cols=102 Identities=22% Similarity=0.138 Sum_probs=62.7
Q ss_pred HHHHhCCCcEEEEEeeecc--CCceeeEEEEcCCCCCCCCCCCeEEEEecccCCchhHHHHHHHHHHHHHHHcCCChHHH
Q psy17404 7 HITKNYPNLTRLYSVGQSV--EKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKIDDRVT 84 (305)
Q Consensus 7 ~l~~~~p~~v~~~~iG~S~--eGr~i~~~~i~~~~~~~~~~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d~~~~ 84 (305)
.|..+.|..++.+.-|... -|+- ++++.+... ....+.|+|||||||..+.+++-.++..+...+ -|
T Consensus 8 tl~~~~p~v~q~~~~g~~~~wl~~g--~le~~p~~~----r~~~lvIsaGiHGNEtapvEll~kl~~~~~ag~--~p--- 76 (324)
T COG2988 8 TLSGKKPVVTQREINGVRWRWLGEG--VLELTPLAP----RDGSLVISAGIHGNETAPVELLDKLQQKISAGQ--LP--- 76 (324)
T ss_pred hhcCCCCeeeeeccCceEEEEeccc--eeeeccCCC----CCCceEEEecccCCccCcHHHHHHHHhhhhhcc--cC---
Confidence 3556677555544444432 2332 233333111 122699999999999999999999999988853 11
Q ss_pred HhhccceEEEEeccCchhHHHHHHhhhhhhhccccccccceecccccceecCCCC
Q psy17404 85 RMLQTTRIHLMPSMNPDGYERAREAVEKWLQDIPFVLSANLHGGSLVANYPYDDN 139 (305)
Q Consensus 85 ~ll~~~~~~iiP~~NPDG~~~~~~~~~~~~k~~~~~~~~~~~g~dlnrnyp~~~~ 139 (305)
+ ..+..+ -+-||-......| ...-|+||.|.-.|.
T Consensus 77 --~-a~r~L~-ilgNP~Ai~~gkR----------------YieqDlNR~F~gr~q 111 (324)
T COG2988 77 --L-AWRCLV-ILGNPPAIAAGKR----------------YIEQDLNRMFGGRPQ 111 (324)
T ss_pred --c-ceeEEE-EecCcHHHHhchH----------------HHhhhHHHHhCCCcc
Confidence 1 233333 3789987776544 222589999975553
No 77
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols. Almost all members of this family are homodimers containing one ferric ion (Fe3+) per monomer. They belong to the intradiol dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=97.01 E-value=0.0019 Score=57.84 Aligned_cols=44 Identities=32% Similarity=0.557 Sum_probs=36.1
Q ss_pred eeeEEECcCCCCccccEEEEe-----ee-------------eEeEeeCCCceE-EEecCCceE
Q psy17404 251 VAGFVKGREGEGVAEASIAVE-----GL-------------GHVVYSAQDGDY-WRLLAPGNY 294 (305)
Q Consensus 251 i~G~v~d~~g~pi~~A~i~i~-----~~-------------~~~~~t~~~G~y-~~~l~~G~y 294 (305)
++|+|+|.+|+||++|.|.|= |. .-...||++|.| +..+.||.|
T Consensus 107 l~G~V~D~~G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~lRG~~~Td~~G~y~f~Ti~P~~Y 169 (256)
T cd03458 107 VHGTVTDTDGKPLAGATVDVWHADPDGFYSQQDPDQPEFNLRGKFRTDEDGRYRFRTIRPVPY 169 (256)
T ss_pred EEEEEEcCCCCCCCCcEEEEEccCCCCCcCCCCCCCCCCCCEEEEEeCCCCCEEEEEECCCCc
Confidence 899999999999999999984 11 013678999999 667999988
No 78
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases. Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0003824 catalytic activity, 0008199 ferric iron binding, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 2BUV_A 2BUX_A 2BUU_A 2BUR_A 1EO9_A 2BUZ_A 2BV0_A 1EO2_A 1EOC_A 1EOA_A ....
Probab=96.97 E-value=0.0024 Score=54.49 Aligned_cols=45 Identities=29% Similarity=0.507 Sum_probs=32.4
Q ss_pred eeeEEECcCCCCccccEEEEe-----ee---------------eEeEeeCCCceE-EEecCCceEE
Q psy17404 251 VAGFVKGREGEGVAEASIAVE-----GL---------------GHVVYSAQDGDY-WRLLAPGNYT 295 (305)
Q Consensus 251 i~G~v~d~~g~pi~~A~i~i~-----~~---------------~~~~~t~~~G~y-~~~l~~G~y~ 295 (305)
+.|+|+|.+|+||++|.|.|= |. .-...||++|.| ++.+.||.|.
T Consensus 32 l~G~V~D~~g~Pv~~A~veiWqada~G~Ys~~~~~~~~~~~~~rG~~~Td~~G~y~f~Ti~Pg~Y~ 97 (183)
T PF00775_consen 32 LHGRVIDTDGKPVPGALVEIWQADADGRYSGQDPGSDQPDFNLRGRFRTDADGRYSFRTIKPGPYP 97 (183)
T ss_dssp EEEEEEETTSSB-TTEEEEEEE--TTS--TTTBTTSSSSTTTTEEEEEECTTSEEEEEEE----EE
T ss_pred EEEEEECCCCCCCCCcEEEEEecCCCCccccccccccccCCCcceEEecCCCCEEEEEeeCCCCCC
Confidence 899999999999999999993 11 113678999999 6679999987
No 79
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups. This reaction is part of the modified ortho-cleavage pathway which is a central oxidative bacterial pathway that channels chlorocatechols, derived from the degradation of chlorinated benzoic acids, phenoxyacetic acids, phenols, benzenes, and other aromatics into the energy-generating tricarboxylic acid pathway.
Probab=96.90 E-value=0.0026 Score=56.57 Aligned_cols=44 Identities=36% Similarity=0.431 Sum_probs=35.8
Q ss_pred eeeEEECcCCCCccccEEEEe-----ee-------------eEeEeeCCCceE-EEecCCceE
Q psy17404 251 VAGFVKGREGEGVAEASIAVE-----GL-------------GHVVYSAQDGDY-WRLLAPGNY 294 (305)
Q Consensus 251 i~G~v~d~~g~pi~~A~i~i~-----~~-------------~~~~~t~~~G~y-~~~l~~G~y 294 (305)
++|+|+|.+|+||++|.|.|= |. .-...||++|.| +..+.||.|
T Consensus 102 l~G~V~D~~G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~~RG~~~Td~~G~y~F~Ti~P~~Y 164 (247)
T cd03462 102 FRGTVKDLAGAPVAGAVIDVWHSTPDGKYSGFHPNIPEDYYRGKIRTDEDGRYEVRTTVPVPY 164 (247)
T ss_pred EEEEEEcCCCCCcCCcEEEEECCCCCCCcCCCCCCCCCCCCEEEEEeCCCCCEEEEEECCCCc
Confidence 899999999999999999984 10 113578999999 566889887
No 80
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Members of this protein family are chlorocatechol 1,2-dioxygenase. This protein is closely related to catechol 1,2-dioxygenase, TIGR02439, EC 1.13.11.1. Note that annotated database entries have appeared for the present protein family with the EC number that refers to that of family TIGR02439. This protein acts in pathways of the biodegradation of chlorinated aromatic compounds.
Probab=96.86 E-value=0.003 Score=56.29 Aligned_cols=45 Identities=36% Similarity=0.443 Sum_probs=36.4
Q ss_pred eeeEEECcCCCCccccEEEEe-----ee-------------eEeEeeCCCceE-EEecCCceEE
Q psy17404 251 VAGFVKGREGEGVAEASIAVE-----GL-------------GHVVYSAQDGDY-WRLLAPGNYT 295 (305)
Q Consensus 251 i~G~v~d~~g~pi~~A~i~i~-----~~-------------~~~~~t~~~G~y-~~~l~~G~y~ 295 (305)
++|+|+|.+|+||++|.|.|= |. .-...||++|.| +..+.||.|.
T Consensus 101 v~G~V~D~~G~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~lRG~~~Td~~G~y~F~Ti~P~~Yp 164 (246)
T TIGR02465 101 IRGTVRDLSGTPVAGAVIDVWHSTPDGKYSGFHDNIPDDYYRGKLVTAADGSYEVRTTMPVPYQ 164 (246)
T ss_pred EEEEEEcCCCCCcCCcEEEEECCCCCCCCCCCCCCCCCCCCeEEEEECCCCCEEEEEECCCCCC
Confidence 899999999999999999984 10 113578999999 6668898883
No 81
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=96.80 E-value=0.0034 Score=57.03 Aligned_cols=45 Identities=24% Similarity=0.483 Sum_probs=36.5
Q ss_pred eeeEEECcCCCCccccEEEEe-----ee-------------eEeEeeCCCceE-EEecCCceEE
Q psy17404 251 VAGFVKGREGEGVAEASIAVE-----GL-------------GHVVYSAQDGDY-WRLLAPGNYT 295 (305)
Q Consensus 251 i~G~v~d~~g~pi~~A~i~i~-----~~-------------~~~~~t~~~G~y-~~~l~~G~y~ 295 (305)
++|+|+|.+|+||++|.|.|= |. .-...||.+|.| +..+.||.|-
T Consensus 131 v~G~V~D~~G~PI~gA~VeIWqad~~G~Ys~~~~~~~~~~lRG~~~TD~~G~y~F~TI~P~~Yp 194 (285)
T TIGR02439 131 LHGQVTDADGKPIAGAKVELWHANTKGNYSHFDKSQSEFNLRRTIITDAEGRYRARSIVPSGYG 194 (285)
T ss_pred EEEEEECCCCCCcCCcEEEEEccCCCCCcCCCCCCCCCCCceEEEEECCCCCEEEEEECCCCCc
Confidence 899999999999999999984 11 013578999999 6679998884
No 82
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=96.78 E-value=0.0039 Score=51.98 Aligned_cols=53 Identities=32% Similarity=0.504 Sum_probs=42.3
Q ss_pred eeeEEECcCCCCccccEEEEe-----ee------------------eEeEeeCCCceE-EEecCCceEE-----------
Q psy17404 251 VAGFVKGREGEGVAEASIAVE-----GL------------------GHVVYSAQDGDY-WRLLAPGNYT----------- 295 (305)
Q Consensus 251 i~G~v~d~~g~pi~~A~i~i~-----~~------------------~~~~~t~~~G~y-~~~l~~G~y~----------- 295 (305)
++|+|+|.+|+||++|.|.|= |. .-...||.+|.| +..+.||.|.
T Consensus 18 l~g~V~D~~g~Pv~~A~veiWqad~~G~Y~~~~~~~~~~~~~~f~~rG~~~Td~~G~~~f~Ti~Pg~Y~~p~~~~R~~HI 97 (158)
T cd03459 18 LEGRVLDGDGRPVPDALVEIWQADAAGRYRHPRDSHRAPLDPNFTGFGRVLTDADGRYRFRTIKPGAYPWRNGAWRAPHI 97 (158)
T ss_pred EEEEEECCCCCCCCCCEEEEEccCCCCccCCccCCcccccCCCCCceeEEEECCCCcEEEEEECCCCcCCCCCCCcCCEE
Confidence 899999999999999999884 10 012568999999 6679999998
Q ss_pred -EEEEecCc
Q psy17404 296 -LHVSAPGE 303 (305)
Q Consensus 296 -l~vs~~Gy 303 (305)
+.|.+.||
T Consensus 98 H~~V~~~g~ 106 (158)
T cd03459 98 HVSVFARGL 106 (158)
T ss_pred EEEEECCCc
Confidence 56667776
No 83
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=96.74 E-value=0.0035 Score=56.80 Aligned_cols=45 Identities=33% Similarity=0.562 Sum_probs=36.6
Q ss_pred eeeEEECcCCCCccccEEEEe-----ee-------------eEeEeeCCCceE-EEecCCceEE
Q psy17404 251 VAGFVKGREGEGVAEASIAVE-----GL-------------GHVVYSAQDGDY-WRLLAPGNYT 295 (305)
Q Consensus 251 i~G~v~d~~g~pi~~A~i~i~-----~~-------------~~~~~t~~~G~y-~~~l~~G~y~ 295 (305)
++|+|+|.+|+||++|.|.|= |. .-...||++|.| +..+.||.|.
T Consensus 123 v~G~V~D~~G~Pv~gA~VeiWqad~~G~Y~~~~~~~~~~~lRGr~~Td~~G~y~F~Ti~Pg~Yp 186 (277)
T cd03461 123 VHGRVTDTDGKPLPGATVDVWQADPNGLYDVQDPDQPEFNLRGKFRTDEDGRYAFRTLRPTPYP 186 (277)
T ss_pred EEEEEEcCCCCCcCCcEEEEECcCCCCCcCCCCCCCCCCCCeEEEEeCCCCCEEEEEECCCCcC
Confidence 899999999999999999883 10 114678999999 6679999886
No 84
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate. 1,2-CTDs is homodimers with one catalytic non-heme ferric ion per monomer. They belong to the aromatic dioxygenase family, a family of mononuclear non-heme iron intradiol-cleaving enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings.
Probab=96.73 E-value=0.0041 Score=56.46 Aligned_cols=45 Identities=29% Similarity=0.578 Sum_probs=36.4
Q ss_pred eeeEEECcCCCCccccEEEEe-----ee-------------eEeEeeCCCceE-EEecCCceEE
Q psy17404 251 VAGFVKGREGEGVAEASIAVE-----GL-------------GHVVYSAQDGDY-WRLLAPGNYT 295 (305)
Q Consensus 251 i~G~v~d~~g~pi~~A~i~i~-----~~-------------~~~~~t~~~G~y-~~~l~~G~y~ 295 (305)
++|+|+|.+|+||++|.|.|= |. .-...||++|.| +..+.||.|.
T Consensus 127 l~G~V~D~~G~PI~~A~VeiWqad~~G~Ys~~~~~~~~f~~RGr~~TD~~G~y~F~TI~P~~Yp 190 (282)
T cd03460 127 MHGTVTDTDGKPVPGAKVEVWHANSKGFYSHFDPTQSPFNLRRSIITDADGRYRFRSIMPSGYG 190 (282)
T ss_pred EEEEEECCCCCCcCCcEEEEECCCCCCCcCCCCCCCCCCCCceEEEeCCCCCEEEEEECCCCCc
Confidence 899999999999999999984 11 013578999999 6678998884
No 85
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=96.73 E-value=0.0048 Score=53.10 Aligned_cols=53 Identities=25% Similarity=0.389 Sum_probs=41.5
Q ss_pred eeeEEECcCCCCccccEEEEee-----e--------------e----EeEeeCCCceE-EEecCCceEE-----------
Q psy17404 251 VAGFVKGREGEGVAEASIAVEG-----L--------------G----HVVYSAQDGDY-WRLLAPGNYT----------- 295 (305)
Q Consensus 251 i~G~v~d~~g~pi~~A~i~i~~-----~--------------~----~~~~t~~~G~y-~~~l~~G~y~----------- 295 (305)
++|+|+|.+|+||++|.|.|=. . . -...||++|.| +..+.||.|.
T Consensus 42 l~G~V~D~~g~Pv~~A~VeiWqad~~G~Y~~~~~~~~~~~~~~f~grGr~~Td~~G~y~f~TI~Pg~Yp~~~g~~R~~Hi 121 (193)
T TIGR02423 42 LEGRVLDGDGHPVPDALIEIWQADAAGRYNSPADLRAPATDPGFRGWGRTGTDESGEFTFETVKPGAVPDRDGVLQAPHI 121 (193)
T ss_pred EEEEEECCCCCCCCCCEEEEEccCCCCccCCccCCcccccCCCCCCeEEEEECCCCCEEEEEEcCCCcCCCCCCCcCCeE
Confidence 8999999999999999998831 0 0 12568999999 6679999885
Q ss_pred -EEEEecCc
Q psy17404 296 -LHVSAPGE 303 (305)
Q Consensus 296 -l~vs~~Gy 303 (305)
+.|++.||
T Consensus 122 H~~V~a~G~ 130 (193)
T TIGR02423 122 NVSVFARGI 130 (193)
T ss_pred EEEEECCCc
Confidence 46677776
No 86
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=96.70 E-value=0.0045 Score=52.90 Aligned_cols=53 Identities=26% Similarity=0.411 Sum_probs=42.4
Q ss_pred eeeEEECcCCCCccccEEEEe-----ee-------e---------E-eEeeCCCceE-EEecCCceEE------------
Q psy17404 251 VAGFVKGREGEGVAEASIAVE-----GL-------G---------H-VVYSAQDGDY-WRLLAPGNYT------------ 295 (305)
Q Consensus 251 i~G~v~d~~g~pi~~A~i~i~-----~~-------~---------~-~~~t~~~G~y-~~~l~~G~y~------------ 295 (305)
++|+|+|.+|+||++|.|.|= |. . . ...||++|.| +..+.||.|.
T Consensus 39 l~G~V~D~~g~Pi~gA~VeiWqad~~G~Y~~~~~~~~~~~~~f~~rGr~~TD~~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH 118 (185)
T cd03463 39 LEGRVYDGDGAPVPDAMLEIWQADAAGRYAHPADSRRRLDPGFRGFGRVATDADGRFSFTTVKPGAVPGRDGAGQAPHIN 118 (185)
T ss_pred EEEEEECCCCCCCCCCEEEEEcCCCCCccCCcCCcccccCCCCCcEEEEEECCCCCEEEEEEcCCCcCCCCCCCcCCeEE
Confidence 899999999999999999884 10 0 0 2578999999 6679999996
Q ss_pred EEEEecCc
Q psy17404 296 LHVSAPGE 303 (305)
Q Consensus 296 l~vs~~Gy 303 (305)
+.|++.||
T Consensus 119 ~~V~~~g~ 126 (185)
T cd03463 119 VWVFARGL 126 (185)
T ss_pred EEEECCCc
Confidence 57777777
No 87
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=96.69 E-value=0.00083 Score=63.72 Aligned_cols=16 Identities=25% Similarity=0.422 Sum_probs=12.8
Q ss_pred CCCCcHHHHHHHHHHH
Q psy17404 148 SPTPDDSIFKLLASSY 163 (305)
Q Consensus 148 ~~~pe~~~~~~l~~~y 163 (305)
.+|||++++.++...+
T Consensus 150 ~~EpEt~Av~~~~~~~ 165 (375)
T cd03863 150 PPQPETLAVMSWLKSY 165 (375)
T ss_pred CCcHHHHHHHHHHhhC
Confidence 4689999999887654
No 88
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit. This model represents the beta chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the alpha chain (TIGR02423), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=96.59 E-value=0.007 Score=53.07 Aligned_cols=45 Identities=31% Similarity=0.499 Sum_probs=36.1
Q ss_pred eeeEEECcCCCCccccEEEEe-----ee------------------eEeEeeCCCceE-EEecCCceEE
Q psy17404 251 VAGFVKGREGEGVAEASIAVE-----GL------------------GHVVYSAQDGDY-WRLLAPGNYT 295 (305)
Q Consensus 251 i~G~v~d~~g~pi~~A~i~i~-----~~------------------~~~~~t~~~G~y-~~~l~~G~y~ 295 (305)
|+|+|+|.+|+||++|.|.|= |. .-...||++|.| +..+.||.|.
T Consensus 63 l~G~V~D~~g~PV~~A~VEIWQada~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~TI~PG~Y~ 131 (220)
T TIGR02422 63 VHGRVLDEDGRPVPNTLVEVWQANAAGRYRHKNDQYLAPLDPNFGGVGRTLTDSDGYYRFRTIKPGPYP 131 (220)
T ss_pred EEEEEECCCCCCCCCCEEEEEecCCCCcccCccCccccccCCCCCCEEEEEECCCccEEEEEECCCCcc
Confidence 899999999999999999984 10 013468999999 6669999984
No 89
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Proteins belonging to this subgroup include CP-like protein X1 (CPX1), CP-like protein X2 (CPX2), and aortic CP-like protein (ACLP) and its isoform adipocyte enhancer binding protein-1 (AEBP1). AEBP1 is a truncated form of ACLP, which may arise from alternative splicing of the gene. These proteins are inactive towards standard CP substrates because they lack one or more critical active site and substrate-binding residues that are necessary for activity. They may function as binding proteins rather than as active CPs or display catalytic activity toward other substrates. Pro
Probab=96.54 E-value=0.0013 Score=62.73 Aligned_cols=16 Identities=6% Similarity=0.098 Sum_probs=12.8
Q ss_pred CCCCcHHHHHHHHHHH
Q psy17404 148 SPTPDDSIFKLLASSY 163 (305)
Q Consensus 148 ~~~pe~~~~~~l~~~y 163 (305)
++|||++++..+...+
T Consensus 180 ~sEPET~Av~~~i~~~ 195 (405)
T cd03869 180 TVAPETRAVIAWMEKI 195 (405)
T ss_pred CCcHHHHHHHHHHHhC
Confidence 3689999998887765
No 90
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPZ is a secreted Zn-dependent enzyme whose biological function is largely unknown. Unlike other members of the N/E subfamily, CPZ has a bipartite structure, which consists of an N-terminal cysteine-rich domain (CRD) whose sequence is similar to Wnt-binding proteins, and a C-terminal CP catalytic domain that removes C-terminal Arg residues from substrates. CPZ is enriched in the extracellular matrix and is widely distributed during early embryogenesis. That the CRD of CPZ can bind to Wnt4 suggests that CPZ plays a role in Wnt signaling.
Probab=96.51 E-value=0.0012 Score=63.13 Aligned_cols=15 Identities=13% Similarity=0.111 Sum_probs=12.0
Q ss_pred CCCcHHHHHHHHHHH
Q psy17404 149 PTPDDSIFKLLASSY 163 (305)
Q Consensus 149 ~~pe~~~~~~l~~~y 163 (305)
+|||++++.++...+
T Consensus 171 sepEt~Av~~~~~~~ 185 (395)
T cd03867 171 VAPETKAVMKWMRSI 185 (395)
T ss_pred cCHHHHHHHHHHhhC
Confidence 589999999887654
No 91
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial. Members of this family are catechol 1,2-dioxygenases of the Actinobacteria. They are more closely related to actinobacterial chlorocatechol 1,2-dioxygenases than to proteobacterial catechol 1,2-dioxygenases, and so are built in this separate model. The member from Rhodococcus rhodochrous NCIMB 13259 (GB|AAC33003.1) is described as a homodimer with bound Fe, similarly active on catechol, 3-methylcatechol and 4-methylcatechol.
Probab=96.50 E-value=0.0066 Score=55.04 Aligned_cols=45 Identities=22% Similarity=0.509 Sum_probs=36.3
Q ss_pred eeeEEECcCCCCccccEEEEe-----ee-------------eEeEeeCCCceE-EEecCCceEE
Q psy17404 251 VAGFVKGREGEGVAEASIAVE-----GL-------------GHVVYSAQDGDY-WRLLAPGNYT 295 (305)
Q Consensus 251 i~G~v~d~~g~pi~~A~i~i~-----~~-------------~~~~~t~~~G~y-~~~l~~G~y~ 295 (305)
+.|+|+|.+|+||++|.|.|= |. .-...||.+|.| +..+.||.|.
T Consensus 135 v~G~V~D~~G~Pv~gA~VdiWqada~G~Ys~~~~~~~~~~lRGr~~TDadG~y~F~TI~Pg~Yp 198 (281)
T TIGR02438 135 FSGQVTDLDGNGLAGAKVELWHADDDGFYSQFAPGIPEWNLRGTIIADDEGRFEITTMQPAPYQ 198 (281)
T ss_pred EEEEEEcCCCCCcCCCEEEEEecCCCCCcCCCCCCCCCCCCeEEEEeCCCCCEEEEEECCCCcC
Confidence 899999999999999999992 21 113578999999 5568898875
No 92
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=96.48 E-value=0.01 Score=52.01 Aligned_cols=45 Identities=27% Similarity=0.485 Sum_probs=36.1
Q ss_pred eeeEEECcCCCCccccEEEEeee-----------------------eEeEeeCCCceE-EEecCCceEE
Q psy17404 251 VAGFVKGREGEGVAEASIAVEGL-----------------------GHVVYSAQDGDY-WRLLAPGNYT 295 (305)
Q Consensus 251 i~G~v~d~~g~pi~~A~i~i~~~-----------------------~~~~~t~~~G~y-~~~l~~G~y~ 295 (305)
|+|+|+|.+|+||++|.|.|=.. .-...||++|.| +..+.||.|.
T Consensus 68 l~G~V~D~~G~PV~~A~VEIWQad~~G~Y~~~~d~~~~~~~~~f~grGr~~TD~~G~y~F~TI~Pg~Yp 136 (220)
T cd03464 68 VHGRVLDEDGRPVPNTLVEIWQANAAGRYRHKRDQHDAPLDPNFGGAGRTLTDDDGYYRFRTIKPGAYP 136 (220)
T ss_pred EEEEEECCCCCCCCCCEEEEEecCCCCcccCccCCcccccCCCCCCEEEEEECCCccEEEEEECCCCcc
Confidence 89999999999999999988410 113478999999 5669999883
No 93
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=96.42 E-value=0.0017 Score=61.76 Aligned_cols=16 Identities=13% Similarity=0.048 Sum_probs=12.6
Q ss_pred CCCCcHHHHHHHHHHH
Q psy17404 148 SPTPDDSIFKLLASSY 163 (305)
Q Consensus 148 ~~~pe~~~~~~l~~~y 163 (305)
.++||++++..+....
T Consensus 148 ~sepEt~al~~~~~~~ 163 (376)
T cd03866 148 QRQPETRAVMEWLKSE 163 (376)
T ss_pred CCcHHHHHHHHHHHhc
Confidence 4799999998887643
No 94
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.26 E-value=0.0084 Score=52.66 Aligned_cols=46 Identities=28% Similarity=0.513 Sum_probs=36.2
Q ss_pred ceeeEEECcCCCCccccEEEEe-----ee-----------------eEeEeeCCCceE-EEecCCceEE
Q psy17404 250 GVAGFVKGREGEGVAEASIAVE-----GL-----------------GHVVYSAQDGDY-WRLLAPGNYT 295 (305)
Q Consensus 250 gi~G~v~d~~g~pi~~A~i~i~-----~~-----------------~~~~~t~~~G~y-~~~l~~G~y~ 295 (305)
.++|+|+|.+|.||++|.|.|= |. .-...||++|.| +..+.||.|-
T Consensus 74 ~l~G~VlD~~G~Pv~~A~VEiWQAda~GrY~~~~d~~~~~~~~f~g~Gr~~Td~~G~y~F~Ti~Pg~yp 142 (226)
T COG3485 74 LLEGRVLDGNGRPVPDALVEIWQADADGRYSHPKDSRLAPLPNFNGRGRTITDEDGEYRFRTIKPGPYP 142 (226)
T ss_pred EEEEEEECCCCCCCCCCEEEEEEcCCCCcccCccccccCcCccccceEEEEeCCCceEEEEEeeccccc
Confidence 4999999999999999999983 11 012468999999 6679898763
No 95
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
Probab=95.89 E-value=0.027 Score=43.18 Aligned_cols=53 Identities=17% Similarity=0.255 Sum_probs=38.4
Q ss_pred eeeEEECcCCCCccccEEEE--ee----eeE---eEeeCCCceEEEe---cCCceEEEEEEecCc
Q psy17404 251 VAGFVKGREGEGVAEASIAV--EG----LGH---VVYSAQDGDYWRL---LAPGNYTLHVSAPGE 303 (305)
Q Consensus 251 i~G~v~d~~g~pi~~A~i~i--~~----~~~---~~~t~~~G~y~~~---l~~G~y~l~vs~~Gy 303 (305)
++.+|+|.+|+||++..|.+ .. ... ...||++|.+... -.+|.|+|+++..|-
T Consensus 27 ltatV~D~~gnpv~g~~V~f~~~~~~~~l~~~~~~~~Td~~G~a~~tltst~aG~~~VtA~~~~~ 91 (100)
T PF02369_consen 27 LTATVTDANGNPVPGQPVTFSSSSSGGTLSPTNTSATTDSNGIATVTLTSTKAGTYTVTATVDGG 91 (100)
T ss_dssp EEEEEEETTSEB-TS-EEEE--EESSSEES-CEE-EEE-TTSEEEEEEE-SS-EEEEEEEEETTE
T ss_pred EEEEEEcCCCCCCCCCEEEEEEcCCCcEEecCccccEECCCEEEEEEEEecCceEEEEEEEECCc
Confidence 88999999999999999999 31 111 3679999999543 567999999998764
No 96
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=95.88 E-value=0.019 Score=40.53 Aligned_cols=42 Identities=29% Similarity=0.487 Sum_probs=30.1
Q ss_pred ccccEEEEeee----eE--eEeeCCCceE-EEecCCceEEEEEEe--cCcc
Q psy17404 263 VAEASIAVEGL----GH--VVYSAQDGDY-WRLLAPGNYTLHVSA--PGED 304 (305)
Q Consensus 263 i~~A~i~i~~~----~~--~~~t~~~G~y-~~~l~~G~y~l~vs~--~Gy~ 304 (305)
|+||++.|... .. ...||++|.| +..|++|.|.|.-.. .||.
T Consensus 1 L~Ga~f~L~~~~~~~~~~~~~~Td~~G~~~f~~L~~G~Y~l~E~~aP~GY~ 51 (70)
T PF05738_consen 1 LAGATFELYDEDGNEVIEVTVTTDENGKYTFKNLPPGTYTLKETKAPDGYQ 51 (70)
T ss_dssp -STEEEEEEETTSEEEEEEEEEGGTTSEEEEEEEESEEEEEEEEETTTTEE
T ss_pred CCCeEEEEEECCCCEEEEEEEEECCCCEEEEeecCCeEEEEEEEECCCCCE
Confidence 46777777621 12 2678999999 446999999999876 5664
No 97
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=95.83 E-value=0.044 Score=41.19 Aligned_cols=54 Identities=17% Similarity=0.153 Sum_probs=43.4
Q ss_pred eeeEEECcCCCCccccEEEEe--ee------eEeEeeCCCceEEEe---cCCceEEEEEEecCcc
Q psy17404 251 VAGFVKGREGEGVAEASIAVE--GL------GHVVYSAQDGDYWRL---LAPGNYTLHVSAPGED 304 (305)
Q Consensus 251 i~G~v~d~~g~pi~~A~i~i~--~~------~~~~~t~~~G~y~~~---l~~G~y~l~vs~~Gy~ 304 (305)
++-+|+|++|.|++++.|.+. +. .....||.+|..... -.+|.++|+++..|..
T Consensus 22 i~v~v~D~~Gnpv~~~~V~f~~~~~~~~~~~~~~~~Td~~G~a~~~l~~~~~G~~~vta~~~~~~ 86 (92)
T smart00634 22 LTATVTDANGNPVAGQEVTFTTPSGGALTLSKGTATTDANGIATVTLTSTTAGVYTVTASLENGS 86 (92)
T ss_pred EEEEEECCCCCCcCCCEEEEEECCCceeeccCCeeeeCCCCEEEEEEECCCCcEEEEEEEECCCc
Confidence 888999999999999998886 21 133578999999544 3579999999998865
No 98
>KOG1948|consensus
Probab=95.33 E-value=0.03 Score=57.23 Aligned_cols=53 Identities=21% Similarity=0.194 Sum_probs=45.4
Q ss_pred ceeeEEEC-cCCCCccccEEEEeeeeEeEeeCCCceEEE-e-cCCceEEEEEEecCc
Q psy17404 250 GVAGFVKG-REGEGVAEASIAVEGLGHVVYSAQDGDYWR-L-LAPGNYTLHVSAPGE 303 (305)
Q Consensus 250 gi~G~v~d-~~g~pi~~A~i~i~~~~~~~~t~~~G~y~~-~-l~~G~y~l~vs~~Gy 303 (305)
.+.|||.+ +.|.|+++|.|.+.| .....||.+|+|.+ + +..|.|+|++.+.-+
T Consensus 317 SvtGRVl~g~~g~~l~gvvvlvng-k~~~kTdaqGyykLen~~t~gtytI~a~kehl 372 (1165)
T KOG1948|consen 317 SVTGRVLVGSKGLPLSGVVVLVNG-KSGGKTDAQGYYKLENLKTDGTYTITAKKEHL 372 (1165)
T ss_pred EeeeeEEeCCCCCCccceEEEEcC-cccceEcccceEEeeeeeccCcEEEEEeccce
Confidence 48999999 699999999999977 44567999999977 3 788999999987654
No 99
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=95.13 E-value=0.014 Score=55.17 Aligned_cols=15 Identities=13% Similarity=-0.011 Sum_probs=12.4
Q ss_pred CCCCcHHHHHHHHHH
Q psy17404 148 SPTPDDSIFKLLASS 162 (305)
Q Consensus 148 ~~~pe~~~~~~l~~~ 162 (305)
+++||++++.++...
T Consensus 146 ~sepEt~Av~~~~~~ 160 (363)
T cd06245 146 DVQPETKAIIDNLIS 160 (363)
T ss_pred CCcHHHHHHHHHHHh
Confidence 589999999888764
No 100
>COG5266 CbiK ABC-type Co2+ transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=94.87 E-value=0.095 Score=46.51 Aligned_cols=50 Identities=24% Similarity=0.334 Sum_probs=39.9
Q ss_pred eeeEEECcCCCCccccEEEEeee-----------------eEeEeeCCCceE-EEecCCceEEEEEEec
Q psy17404 251 VAGFVKGREGEGVAEASIAVEGL-----------------GHVVYSAQDGDY-WRLLAPGNYTLHVSAP 301 (305)
Q Consensus 251 i~G~v~d~~g~pi~~A~i~i~~~-----------------~~~~~t~~~G~y-~~~l~~G~y~l~vs~~ 301 (305)
++|+|.|. |+||++|+|.++-. .....||.+|.| ++++-.|...+.+-+.
T Consensus 174 f~~~vl~~-GkPv~nA~V~v~~~n~~~~d~~a~~~~~ek~~~~~~TD~kG~~~fip~r~G~W~~~~~~~ 241 (264)
T COG5266 174 FRGKVLDN-GKPVPNATVEVEFDNIDTKDNRAKTGNTEKTALVQFTDDKGEVSFIPLRAGVWGFAVEHK 241 (264)
T ss_pred EEEEEEEC-CccCCCcEEEEEEecccccccccccCCCCCcceEEEcCCCceEEEEEccCceEEEEeecc
Confidence 89999997 99999999999811 134578999999 6678889877776543
No 101
>PF09430 DUF2012: Protein of unknown function (DUF2012); InterPro: IPR019008 This domain is found in different proteins, including uncharacterised protein family UPF0480 and nodal modulators. A nodal modulator has been identified as part of a protein complex that participates in the nodal signaling pathway during vertebrate development [].
Probab=94.82 E-value=0.047 Score=43.49 Aligned_cols=42 Identities=21% Similarity=0.434 Sum_probs=32.6
Q ss_pred ccccEEEEeeeeE---eEeeCCCceEE-EecCCceEEEEEEecCcc
Q psy17404 263 VAEASIAVEGLGH---VVYSAQDGDYW-RLLAPGNYTLHVSAPGED 304 (305)
Q Consensus 263 i~~A~i~i~~~~~---~~~t~~~G~y~-~~l~~G~y~l~vs~~Gy~ 304 (305)
.+...|.+.+... .+..+.||.|. ..|++|+|.|+|.+..|.
T Consensus 7 ~~~t~V~L~~g~~~~~~~~v~~dG~F~f~~Vp~GsY~L~V~s~~~~ 52 (123)
T PF09430_consen 7 PSSTRVTLNGGQYRPISAFVRSDGSFVFHNVPPGSYLLEVHSPDYV 52 (123)
T ss_pred CCCEEEEEeCCCccceEEEecCCCEEEeCCCCCceEEEEEECCCcc
Confidence 3456777765444 67789999995 469999999999998773
No 102
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase. Members of this family, hydroxyisourate hydrolase, represent a distinct clade of transthyretin-related proteins. Bacterial members typically are encoded next to ureidoglycolate hydrolase and often near either xanthine dehydrogenase or xanthine/uracil permease genes and have been demonstrated to have hydroxyisourate hydrolase activity. In eukaryotes, a clade separate from the transthyretins (a family of thyroid-hormone binding proteins) has also been shown to have HIU hydrolase activity in urate catabolizing organisms. Transthyretin, then, would appear to be the recently diverged paralog of the more ancient HIUH family.
Probab=94.74 E-value=0.065 Score=41.99 Aligned_cols=53 Identities=21% Similarity=0.223 Sum_probs=41.0
Q ss_pred eeeEEEC-cCCCCccccEEEEeeee-------EeEeeCCCceEEE------ecCCceEEEEEEecCc
Q psy17404 251 VAGFVKG-REGEGVAEASIAVEGLG-------HVVYSAQDGDYWR------LLAPGNYTLHVSAPGE 303 (305)
Q Consensus 251 i~G~v~d-~~g~pi~~A~i~i~~~~-------~~~~t~~~G~y~~------~l~~G~y~l~vs~~Gy 303 (305)
|+-.|.| ..|.|-++..|.+.... ....||.||...- .+++|.|+|++....|
T Consensus 3 lstHVLDt~~G~PAagv~V~L~~~~~~~~~~i~~~~Tn~DGR~~~~l~~~~~~~~G~Y~l~F~~g~Y 69 (112)
T TIGR02962 3 LSTHVLDTTSGKPAAGVPVTLYRLDGSGWTPLAEGVTNADGRCPDLLPEGETLAAGIYKLRFDTGDY 69 (112)
T ss_pred ceEEEEeCCCCccCCCCEEEEEEecCCCeEEEEEEEECCCCCCcCcccCcccCCCeeEEEEEEhhhh
Confidence 6678999 99999999999996321 1467999999942 2578999999876544
No 103
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=94.71 E-value=0.13 Score=38.97 Aligned_cols=52 Identities=25% Similarity=0.376 Sum_probs=27.2
Q ss_pred eeeEEECcCC--CCcc--ccEEEEe-------e--eeEeEeeCCCceEEEe-cCCceEEEEEEecC
Q psy17404 251 VAGFVKGREG--EGVA--EASIAVE-------G--LGHVVYSAQDGDYWRL-LAPGNYTLHVSAPG 302 (305)
Q Consensus 251 i~G~v~d~~g--~pi~--~A~i~i~-------~--~~~~~~t~~~G~y~~~-l~~G~y~l~vs~~G 302 (305)
|+|+|..++| .+.. .+.|-+. . -..-+.+|.+|.|.+. +.||+|+|.+=..|
T Consensus 5 VsG~l~l~dg~~~~~~~~~~~Vgl~~~~d~~q~~~yqYwt~td~~G~Fti~~V~pGtY~L~ay~~g 70 (95)
T PF14686_consen 5 VSGRLTLSDGVTNPPAGANAVVGLAPPGDFQQNKGYQYWTRTDSDGNFTIPNVRPGTYRLYAYADG 70 (95)
T ss_dssp EEEEEE---SS--TT--S-EEEEEE--------SS-EEEEE--TTSEEE---B-SEEEEEEEEE--
T ss_pred EEEEEEEccCcccCccceeEEEEeeeccccccCCCCcEEEEeCCCCcEEeCCeeCcEeEEEEEEec
Confidence 8999886555 3333 3444443 1 1123678999999775 99999999986654
No 104
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=94.58 E-value=0.057 Score=38.33 Aligned_cols=38 Identities=26% Similarity=0.296 Sum_probs=29.2
Q ss_pred ccccEEEEeeeeEeEeeCCCceEEEe-cCCceEEEEEEecCccC
Q psy17404 263 VAEASIAVEGLGHVVYSAQDGDYWRL-LAPGNYTLHVSAPGEDQ 305 (305)
Q Consensus 263 i~~A~i~i~~~~~~~~t~~~G~y~~~-l~~G~y~l~vs~~Gy~~ 305 (305)
.++|.|+|.|...+ .|. ..+. |++|.|+|++++.||++
T Consensus 10 p~gA~V~vdg~~~G-~tp----~~~~~l~~G~~~v~v~~~Gy~~ 48 (71)
T PF08308_consen 10 PSGAEVYVDGKYIG-TTP----LTLKDLPPGEHTVTVEKPGYEP 48 (71)
T ss_pred CCCCEEEECCEEec-cCc----ceeeecCCccEEEEEEECCCee
Confidence 45799999987766 222 2334 89999999999999974
No 105
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=94.52 E-value=0.12 Score=44.60 Aligned_cols=50 Identities=16% Similarity=0.137 Sum_probs=41.7
Q ss_pred eeeEEECcCCCCccccEEEEeee---------eEeEeeCCCceEEEe-cCCceEEEEEEec
Q psy17404 251 VAGFVKGREGEGVAEASIAVEGL---------GHVVYSAQDGDYWRL-LAPGNYTLHVSAP 301 (305)
Q Consensus 251 i~G~v~d~~g~pi~~A~i~i~~~---------~~~~~t~~~G~y~~~-l~~G~y~l~vs~~ 301 (305)
++.+|+ -+|+|+++|.|.+... ...++||++|.+.+. ..+|.|-|.+++.
T Consensus 153 ~~~~vl-~~GkPl~~a~V~~~~~~~~~~~~~~~~~~~TD~~G~~~~~~~~~G~wli~a~~~ 212 (215)
T PF10670_consen 153 LPFQVL-FDGKPLAGAEVEAFSPGGWYDVEHEAKTLKTDANGRATFTLPRPGLWLIRASHK 212 (215)
T ss_pred EEEEEE-ECCeEcccEEEEEEECCCccccccceEEEEECCCCEEEEecCCCEEEEEEEEEe
Confidence 777887 7999999999999733 456889999999766 5789999999874
No 106
>PF09892 DUF2119: Uncharacterized protein conserved in archaea (DUF2119); InterPro: IPR019218 This entry represents a family of hypothetical archaeal proteins of unknown function.
Probab=93.77 E-value=0.069 Score=45.22 Aligned_cols=70 Identities=14% Similarity=0.180 Sum_probs=42.4
Q ss_pred CeEEEEecccCCchhHHHHHHHHHHHHHHHcCCChHHHHhhccceEEEEeccCchhHHHHHH-----------hhhhhhh
Q psy17404 47 PEFKYVANMHGNEVVGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYERARE-----------AVEKWLQ 115 (305)
Q Consensus 47 p~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d~~~~~ll~~~~~~iiP~~NPDG~~~~~~-----------~~~~~~k 115 (305)
|.=+|+||+||+||-.+.-++.-+ .. ..+.+-.++|+|+++ +|-.++.- .+.+...
T Consensus 7 p~rLFvgGlHG~Egk~t~~iL~~l---~~---------~~~~~G~l~i~plv~-~~kYiSTL~~~YY~s~~Gk~il~lIe 73 (193)
T PF09892_consen 7 PKRLFVGGLHGDEGKDTSPILKRL---KP---------NDFNNGNLIIIPLVE-NSKYISTLDPEYYKSEMGKKILDLIE 73 (193)
T ss_pred ceEEEEeeccCcchhhHHHHHHHh---Cc---------ccccCceEEEEeCCC-CCCceeecCHHHhcchhhhHHHHHHH
Confidence 888999999999997665554333 22 123457889999444 34433321 2233334
Q ss_pred ccccccccceeccc
Q psy17404 116 DIPFVLSANLHGGS 129 (305)
Q Consensus 116 ~~~~~~~~~~~g~d 129 (305)
..++..++-+|.++
T Consensus 74 ~y~P~~Y~ElHsY~ 87 (193)
T PF09892_consen 74 KYKPEFYFELHSYS 87 (193)
T ss_pred HhCCceEEEEeecC
Confidence 44556677777765
No 107
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=93.65 E-value=0.043 Score=52.43 Aligned_cols=44 Identities=18% Similarity=0.220 Sum_probs=30.6
Q ss_pred cccceecccccceecCCCC------C-CC----CC--CC--CCCCCcHHHHHHHHHHHH
Q psy17404 121 LSANLHGGSLVANYPYDDN------Q-AM----KP--QV--DSPTPDDSIFKLLASSYA 164 (305)
Q Consensus 121 ~~~~~~g~dlnrnyp~~~~------~-~~----~p--~~--~~~~pe~~~~~~l~~~y~ 164 (305)
.+.|++|||||||||..|. . .+ .| .. ..+|||++++..+.+.+.
T Consensus 126 ~R~Na~GVDLNRNFp~~~~~~~~~~~~~g~~~~~P~~~~~~~~~epET~Av~~~~~~~~ 184 (392)
T cd03864 126 GRNNANGVDLNRNFPDLNTLMYYNEKYGGPNHHLPLPDNWKSQVEPETLAVIQWMQNYN 184 (392)
T ss_pred ccccccCcccccCCCcccccchhhhccCCccccCCCccccccccCHHHHHHHHHHHhcC
Confidence 3678999999999995432 1 11 12 22 357999999998887653
No 108
>KOG1948|consensus
Probab=93.19 E-value=0.15 Score=52.36 Aligned_cols=53 Identities=28% Similarity=0.493 Sum_probs=44.3
Q ss_pred ceeeEEECcCCCCccccEEEEeee---eEeEeeCCCceE-EEecCCceEEEEEEecC
Q psy17404 250 GVAGFVKGREGEGVAEASIAVEGL---GHVVYSAQDGDY-WRLLAPGNYTLHVSAPG 302 (305)
Q Consensus 250 gi~G~v~d~~g~pi~~A~i~i~~~---~~~~~t~~~G~y-~~~l~~G~y~l~vs~~G 302 (305)
+++|+|.-+.|-..++..|.+... -..+.|+.+|.| ++++.||+|.|.++++-
T Consensus 120 sv~GkVlgaaggGpagV~velrs~e~~iast~T~~~Gky~f~~iiPG~Yev~ashp~ 176 (1165)
T KOG1948|consen 120 SVRGKVLGAAGGGPAGVLVELRSQEDPIASTKTEDGGKYEFRNIIPGKYEVSASHPA 176 (1165)
T ss_pred eEeeEEeeccCCCcccceeecccccCcceeeEecCCCeEEEEecCCCceEEeccCcc
Confidence 489999887777778888888654 456789999999 77899999999999864
No 109
>PF11974 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: IPR021868 This is the N-terminal MG1 domain from alpha-2-macroglobulin [].
Probab=92.95 E-value=0.47 Score=36.07 Aligned_cols=51 Identities=16% Similarity=0.081 Sum_probs=37.8
Q ss_pred ceeeEEEC-cCCCCccccEEEEee-ee----EeEeeCCCceEEEecCCceEEEEEEe
Q psy17404 250 GVAGFVKG-REGEGVAEASIAVEG-LG----HVVYSAQDGDYWRLLAPGNYTLHVSA 300 (305)
Q Consensus 250 gi~G~v~d-~~g~pi~~A~i~i~~-~~----~~~~t~~~G~y~~~l~~G~y~l~vs~ 300 (305)
++.-.|.+ ++|+|+++|.|.+-. .+ ...+||.+|...+......+-+.++.
T Consensus 14 ~~~v~v~~L~tg~Pv~ga~V~l~~~~~~~~l~~g~TD~~G~a~~~~~~~~~~viA~~ 70 (97)
T PF11974_consen 14 GLLVWVTSLSTGKPVAGAEVELYDSRNGQVLASGKTDADGFASFDSTKKPFLVIARK 70 (97)
T ss_pred CEEEEEeeCCCCCccCCCEEEEEECCCCcEeeeeeeCCCceEEecCCCCCEEEEEEE
Confidence 45556888 999999999999976 22 24679999999776555556666654
No 110
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3.4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
Probab=91.84 E-value=0.1 Score=49.91 Aligned_cols=43 Identities=16% Similarity=0.161 Sum_probs=28.9
Q ss_pred ccceecccccceecCCCC------CC-CCC------------CCCCCCCcHHHHHHHHHHHH
Q psy17404 122 SANLHGGSLVANYPYDDN------QA-MKP------------QVDSPTPDDSIFKLLASSYA 164 (305)
Q Consensus 122 ~~~~~g~dlnrnyp~~~~------~~-~~p------------~~~~~~pe~~~~~~l~~~y~ 164 (305)
+.|++|+|||||||..+. .. +.+ .....+||++++......+.
T Consensus 131 R~Na~GvDLNRNFp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pEt~Avm~w~~~~~ 192 (402)
T cd03865 131 RSNAQGIDLNRNFPDLDRIVYVNEREGGPNNHLLKNMKKAVDENTKLAPETKAVIHWIMDIP 192 (402)
T ss_pred cccccCcccCCCCCcccchhhhhhccCCCccccccccccccccccCCChHHHHHHHHHHhCC
Confidence 468999999999996421 11 111 01246899999988887763
No 111
>PF06488 L_lac_phage_MSP: Lactococcus lactis bacteriophage major structural protein; InterPro: IPR010517 This family consists of several Lactococcus lactis bacteriophage F4-1 major structural proteins []. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=91.51 E-value=0.26 Score=42.33 Aligned_cols=28 Identities=32% Similarity=0.474 Sum_probs=21.5
Q ss_pred EeeCCCceEEE--ecCCceEEEEEEecCcc
Q psy17404 277 VYSAQDGDYWR--LLAPGNYTLHVSAPGED 304 (305)
Q Consensus 277 ~~t~~~G~y~~--~l~~G~y~l~vs~~Gy~ 304 (305)
++||..|.-.. .|.+|.|+++.|+.||.
T Consensus 260 VITnssG~~vTNgqLsaGtYtVTySAsGY~ 289 (301)
T PF06488_consen 260 VITNSSGNVVTNGQLSAGTYTVTYSASGYA 289 (301)
T ss_pred EEEcCCCcEeecCcccCceEEEEEeccccc
Confidence 34565555532 59999999999999996
No 112
>PF01190 Pollen_Ole_e_I: Pollen proteins Ole e I like; InterPro: IPR006041 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ole e 1. A number of plant pollen proteins, whose biological function is not yet known, are structurally related []. These proteins are most probably secreted and consist of about 145 residues. There are six cysteines which are conserved in the sequence of these proteins. They seem to be involved in disulphide bonds.
Probab=91.26 E-value=0.57 Score=35.43 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=26.4
Q ss_pred CCCccccEEEEeee--------eEeEeeCCCceEEEecCCc
Q psy17404 260 GEGVAEASIAVEGL--------GHVVYSAQDGDYWRLLAPG 292 (305)
Q Consensus 260 g~pi~~A~i~i~~~--------~~~~~t~~~G~y~~~l~~G 292 (305)
..||+||.|.|+.. .....||.+|.|.+.|+..
T Consensus 18 ~~~l~GA~V~v~C~~~~~~~~~~~~~~Td~~G~F~i~l~~~ 58 (97)
T PF01190_consen 18 AKPLPGAKVSVECKDGNGGVVFSAEAKTDENGYFSIELPSD 58 (97)
T ss_pred CccCCCCEEEEECCCCCCCcEEEEEEEeCCCCEEEEEecCc
Confidence 57999999999833 2346789999999988654
No 113
>COG4073 Uncharacterized protein conserved in archaea [Function unknown]
Probab=91.16 E-value=0.2 Score=41.59 Aligned_cols=38 Identities=21% Similarity=0.419 Sum_probs=28.3
Q ss_pred EEEecccCCchhHHHHHHHHHHHHHHHcCCChHHHHhhccceEEEEeccCc
Q psy17404 50 KYVANMHGNEVVGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNP 100 (305)
Q Consensus 50 ~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~~d~~~~~ll~~~~~~iiP~~NP 100 (305)
+++||.||+||-.++-+++ +..|-. .|-++.|+|.+|+
T Consensus 18 lfV~GlHGdEgk~te~ilr-l~~~~~------------~ng~l~Vip~v~n 55 (198)
T COG4073 18 LFVGGLHGDEGKATEPILR-LRVLPE------------ENGVLRVIPKVEN 55 (198)
T ss_pred EEEeeccCcccchhhhhhh-hcccCc------------cCceEEEEeccCC
Confidence 8999999999999888887 322211 3578889995554
No 114
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=91.06 E-value=0.42 Score=41.01 Aligned_cols=45 Identities=22% Similarity=0.265 Sum_probs=34.0
Q ss_pred eeeEEEC-cCCCCccccEEEEe-----e----e---e------------E-eEeeCCCceE-EEecCCceEE
Q psy17404 251 VAGFVKG-REGEGVAEASIAVE-----G----L---G------------H-VVYSAQDGDY-WRLLAPGNYT 295 (305)
Q Consensus 251 i~G~v~d-~~g~pi~~A~i~i~-----~----~---~------------~-~~~t~~~G~y-~~~l~~G~y~ 295 (305)
+.|+|+| .+++||++|.|.|= | . . + ...||++|.| +..+.||-|.
T Consensus 29 l~g~V~D~~~c~Pv~~a~VdiWh~da~G~Ys~~~~~~~~~~~~~~~~flRG~~~TD~~G~~~F~TI~PG~Y~ 100 (188)
T cd03457 29 LDLQVVDVATCCPPPNAAVDIWHCDATGVYSGYSAGGGGGEDTDDETFLRGVQPTDADGVVTFTTIFPGWYP 100 (188)
T ss_pred EEEEEEeCCCCccCCCeEEEEecCCCCCCCCCccCCccccccccCCCcCEEEEEECCCccEEEEEECCCCCC
Confidence 7999999 67999999999883 1 0 0 1 2467999999 5668898864
No 115
>PF00576 Transthyretin: HIUase/Transthyretin family; InterPro: IPR023416 This family includes transthyretin that is a thyroid hormone-binding protein that transports thyroxine from the bloodstream to the brain. However, most of the sequences listed in this family do not bind thyroid hormones. They are actually enzymes of the purine catabolism that catalyse the conversion of 5-hydroxyisourate (HIU) to OHCU [, ]. HIU hydrolysis is the original function of the family and is conserved from bacteria to mammals; transthyretins arose by gene duplications in the vertebrate lineage [, ]. HIUases are distinguished in the alignment from the conserved C-terminal YRGS sequence. Transthyretin (formerly prealbumin) is one of 3 thyroid hormone-binding proteins found in the blood of vertebrates []. It is produced in the liver and circulates in the bloodstream, where it binds retinol and thyroxine (T4) []. It differs from the other 2 hormone-binding proteins (T4-binding globulin and albumin) in 3 distinct ways: (1) the gene is expressed at a high rate in the brain choroid plexus; (2) it is enriched in cerebrospinal fluid; and (3) no genetically caused absence has been observed, suggesting an essential role in brain function, distinct from that played in the bloodstream []. The protein consists of around 130 amino acids, which assemble as a homotetramer that contains an internal channel in which T4 is bound. Within this complex, T4 appears to be transported across the blood-brain barrier, where, in the choroid plexus, the hormone stimulates further synthesis of transthyretin. The protein then diffuses back into the bloodstream, where it binds T4 for transport back to the brain [].; PDB: 1TFP_B 1KGJ_D 1IE4_C 1GKE_C 1KGI_D 2H0J_B 2H0E_B 2H0F_B 1ZD6_A 3DGD_D ....
Probab=90.81 E-value=0.21 Score=39.15 Aligned_cols=52 Identities=21% Similarity=0.246 Sum_probs=37.4
Q ss_pred ceeeEEEC-cCCCCccccEEEEeeee--------EeEeeCCCceEE--E----ecCCceEEEEEEec
Q psy17404 250 GVAGFVKG-REGEGVAEASIAVEGLG--------HVVYSAQDGDYW--R----LLAPGNYTLHVSAP 301 (305)
Q Consensus 250 gi~G~v~d-~~g~pi~~A~i~i~~~~--------~~~~t~~~G~y~--~----~l~~G~y~l~vs~~ 301 (305)
.|+-.|.| ..|.|-++..|.+.... ....||.||+.. . .+.+|.|+|++...
T Consensus 2 ~iStHVLDt~~G~PA~gv~V~L~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~~~ 68 (112)
T PF00576_consen 2 PISTHVLDTTTGKPAAGVPVTLYRLDSDGSWTLLAEGVTDADGRIKQPLLEGESLEPGIYKLVFDTG 68 (112)
T ss_dssp SEEEEEEETTTTEE-TT-EEEEEEEETTSCEEEEEEEEBETTSEESSTSSETTTS-SEEEEEEEEHH
T ss_pred CcEEEEeeCCCCCCccCCEEEEEEecCCCCcEEEEEEEECCCCcccccccccccccceEEEEEEEHH
Confidence 36778999 99999999999997433 346789999981 1 26789999987543
No 116
>cd03859 M14_CPT Peptidase M14-like domain of carboxypeptidase (CP) T (CPT), CPT belongs to the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPT has moderate similarity to CPA and CPB, and exhibits dual-substrate specificity by cleaving C-terminal hydrophobic amino acid residues like CPA and C-terminal positively charged residues like CPB. CPA and CPB are M14 family peptidases but do not belong to this CPT group. The substrate specificity difference between CPT and CPA and CPB is ascribed to a few amino acid substitutions at the substrate-binding pocket while the spatial organization of the binding site remains the same as in all Zn-CPs. CPT has increased thermal stability in presence of Ca2+ ions, and two disulfide bridges which give an additional stabilization factor.
Probab=89.94 E-value=0.57 Score=43.04 Aligned_cols=58 Identities=21% Similarity=0.293 Sum_probs=46.8
Q ss_pred HHHhhhhhhhcc-ccccccceecccccceecCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhc
Q psy17404 106 AREAVEKWLQDI-PFVLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLLASSYANAH 167 (305)
Q Consensus 106 ~~~~~~~~~k~~-~~~~~~~~~g~dlnrnyp~~~~~~~~p~~~~~~pe~~~~~~l~~~y~~~h 167 (305)
..+++++|.++. ++.+.+++|++.....|||++.... ....|+...++.|++.++..+
T Consensus 176 Et~av~~~~~~~~~~~~~l~~Hs~g~~i~~P~~~~~~~----~~~~~d~~~~~~la~~~~~~~ 234 (295)
T cd03859 176 ETQAIRDFVESHKNIKTALNYHTYSNLWLYPYGYQYNE----PMPSKDEIDFVALGGTMAESN 234 (295)
T ss_pred HHHHHHHHHHhCCCeEEEEEeecCCceEEeCCcCCCCC----CCCCccHHHHHHHHHHHHHHh
Confidence 345788999888 7889999999999999999986321 124678899999999888765
No 117
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=89.82 E-value=1.2 Score=33.14 Aligned_cols=52 Identities=23% Similarity=0.283 Sum_probs=37.0
Q ss_pred cceeeEEECcCCCCccccEEEEeeeeEeEeeCCCce--EEEecCCceEEEEEEecCc
Q psy17404 249 RGVAGFVKGREGEGVAEASIAVEGLGHVVYSAQDGD--YWRLLAPGNYTLHVSAPGE 303 (305)
Q Consensus 249 ~gi~G~v~d~~g~pi~~A~i~i~~~~~~~~t~~~G~--y~~~l~~G~y~l~vs~~Gy 303 (305)
.|-.-.+.|..+.|.++..|........ . .+|. -.+.|+||+|+|++.+..+
T Consensus 20 tgh~hlliD~~~~~~~~~~I~~~~n~vh-y--~~Gqte~~I~L~PG~htLtl~~~d~ 73 (87)
T PF14347_consen 20 TGHHHLLIDGDGPPLANEPIPFNINGVH-Y--GKGQTELNIELPPGKHTLTLQLGDG 73 (87)
T ss_pred CccEEEEECCCCCcCCCCeeeecCCeEE-e--CCCEEEEEEEeCCCCEEEEEEeCCC
Confidence 3566678999999999999988532221 1 3343 3677999999999987543
No 118
>cd05822 TLP_HIUase HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU). HIUase has high sequence similarity with transthyretins and is a member of the transthyretin-like protein (TLP) family. HIUase is distinguished from transthyretins by a conserved signature motif at its C-terminus that forms part of the active site. In HIUase, this motif is YRGS, while transthyretins have a conserved TAVV sequence in the same location. Most HIUases are cytosolic but in plants and slime molds, they are peroxisomal based on the presence of N-terminal periplasmic localization sequences. HIUase forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located betw
Probab=89.50 E-value=1 Score=35.24 Aligned_cols=53 Identities=21% Similarity=0.221 Sum_probs=40.5
Q ss_pred eeeEEEC-cCCCCccccEEEEeee-------eEeEeeCCCceEEE------ecCCceEEEEEEecCc
Q psy17404 251 VAGFVKG-REGEGVAEASIAVEGL-------GHVVYSAQDGDYWR------LLAPGNYTLHVSAPGE 303 (305)
Q Consensus 251 i~G~v~d-~~g~pi~~A~i~i~~~-------~~~~~t~~~G~y~~------~l~~G~y~l~vs~~Gy 303 (305)
|+-.|.| ..|.|-++..|.+.-. -...+||.||.... .+.+|.|+|++....|
T Consensus 3 lstHVLDt~~G~PAagv~V~L~~~~~~~~~~i~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~~~~Y 69 (112)
T cd05822 3 LSTHVLDTATGKPAAGVAVTLYRLDGNGWTLLATGVTNADGRCDDLLPPGAQLAAGTYKLTFDTGAY 69 (112)
T ss_pred ceeEEEeCCCCcccCCCEEEEEEecCCCeEEEEEEEECCCCCccCcccccccCCCeeEEEEEEhhhh
Confidence 6678999 9999999999999632 12467999999832 2567999999866544
No 119
>cd05469 Transthyretin_like Transthyretin_like. This domain is present in the transthyretin-like protein (TLP) family which includes transthyretin (TTR) and a transthyretin-related protein called 5-hydroxyisourate hydrolase (HIUase). TTR and HIUase are homotetrameric proteins with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits. TTR transports thyroid hormones and retinol in the blood serum of vertebrates while HIUase catalyzes the second step in a three-step ureide pathway. TTRs are highly conserved and found only in vertebrates while the HIUases are found in a wide range of bacterial, plant, fungal, slime mold and vertebrate organisms.
Probab=88.43 E-value=1.1 Score=35.02 Aligned_cols=52 Identities=17% Similarity=0.150 Sum_probs=39.2
Q ss_pred eeeEEEC-cCCCCccccEEEEeee-----e---EeEeeCCCceEEE-----ecCCceEEEEEEecC
Q psy17404 251 VAGFVKG-REGEGVAEASIAVEGL-----G---HVVYSAQDGDYWR-----LLAPGNYTLHVSAPG 302 (305)
Q Consensus 251 i~G~v~d-~~g~pi~~A~i~i~~~-----~---~~~~t~~~G~y~~-----~l~~G~y~l~vs~~G 302 (305)
|+-.|.| ..|.|-+|..|.+.-. + ...+||.||...- .+.+|.|+|++.-..
T Consensus 3 lStHVLDt~~G~PAagv~V~L~~~~~~~~w~~l~~~~Tn~DGR~~~~l~~~~~~~G~Y~l~F~t~~ 68 (113)
T cd05469 3 LMVKVLDAVRGSPAANVAIKVFRKTADGSWEIFATGKTNEDGELHGLITEEEFXAGVYRVEFDTKS 68 (113)
T ss_pred ceEEEEeCCCCccCCCCEEEEEEecCCCceEEEEEEEECCCCCccCccccccccceEEEEEEehHH
Confidence 5668999 9999999999999521 1 2357899999832 357899999986443
No 120
>cd06227 Peptidase_M14-like_2 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=88.30 E-value=0.91 Score=41.26 Aligned_cols=65 Identities=15% Similarity=0.161 Sum_probs=48.0
Q ss_pred HHHhhhhhhhccccccccceecccccceecCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhcCccCCCCCC
Q psy17404 106 AREAVEKWLQDIPFVLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLLASSYANAHKKMYKDPGC 176 (305)
Q Consensus 106 ~~~~~~~~~k~~~~~~~~~~~g~dlnrnyp~~~~~~~~p~~~~~~pe~~~~~~l~~~y~~~h~~~~~~~~~ 176 (305)
..+++++|.++.++.+.+++|++.+...|||+++... .+|+...+..++...+..|...|..|++
T Consensus 162 Et~av~~~~~~~~~~~~i~~Hs~~~~i~~P~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~y~~G~~ 226 (272)
T cd06227 162 ETRVLRDLLTSFSPDVFLSVHSGTLALFTPYAYKKEQ------PEPNLAEDMRILLLISNKHCPRCQVGSA 226 (272)
T ss_pred HHHHHHHHHHhCCCeEEEEeccCCCEEEecCCCCCCC------CCCCHHHHHHHHHHHHHHhCCCCceecC
Confidence 3447888988888999999999999999999986421 1355555666666555567777877764
No 121
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function.
Probab=88.20 E-value=1.6 Score=34.19 Aligned_cols=53 Identities=15% Similarity=0.292 Sum_probs=41.3
Q ss_pred ceeeEEECcCCCCccccEEEEee---e------eE---eEeeCCCceE-EEecCCceEEEEEEecC
Q psy17404 250 GVAGFVKGREGEGVAEASIAVEG---L------GH---VVYSAQDGDY-WRLLAPGNYTLHVSAPG 302 (305)
Q Consensus 250 gi~G~v~d~~g~pi~~A~i~i~~---~------~~---~~~t~~~G~y-~~~l~~G~y~l~vs~~G 302 (305)
.+.=.|.|+.|+|+.+.+|.+-. . .. --.||+.|.+ |+...-|+|.|.....|
T Consensus 43 pVT~hVen~e~~pi~~~ev~lmKa~ds~~qPs~eig~~IGKTD~~Gki~Wk~~~kG~Y~v~l~n~e 108 (131)
T PF10794_consen 43 PVTFHVENAEGQPIKDFEVTLMKAADSDPQPSKEIGISIGKTDEEGKIIWKNGRKGKYIVFLPNGE 108 (131)
T ss_pred cEEEEEecCCCCcccceEEEEEeccccCCCCchhhceeecccCCCCcEEEecCCcceEEEEEcCCC
Confidence 36777899999999999999853 1 11 1368999999 88899999999876544
No 122
>smart00095 TR_THY Transthyretin.
Probab=87.69 E-value=1.3 Score=35.21 Aligned_cols=52 Identities=12% Similarity=0.103 Sum_probs=39.5
Q ss_pred ceeeEEEC-cCCCCccccEEEEeeee--------EeEeeCCCceEE--E---ecCCceEEEEEEec
Q psy17404 250 GVAGFVKG-REGEGVAEASIAVEGLG--------HVVYSAQDGDYW--R---LLAPGNYTLHVSAP 301 (305)
Q Consensus 250 gi~G~v~d-~~g~pi~~A~i~i~~~~--------~~~~t~~~G~y~--~---~l~~G~y~l~vs~~ 301 (305)
.|+-.|.| ..|.|-+|..|.+.... ....||.||+.. + .+.+|.|+|++.-.
T Consensus 5 plTtHVLDt~~G~PAagv~V~L~~~~~~~~w~~la~~~Tn~DGR~~~ll~~~~~~~G~Y~l~F~tg 70 (121)
T smart00095 5 PLMVKVLDAVRGSPAVNVAVKVFKKTEEGTWEPFASGKTNESGEIHELTTDEKFVEGLYKVEFDTK 70 (121)
T ss_pred CeEEEEEECCCCccCCCCEEEEEEeCCCCceEEEEEEecCCCccccCccCcccccceEEEEEEehh
Confidence 37778999 99999999999995321 235789999993 2 25689999998543
No 123
>cd05821 TLP_Transthyretin Transthyretin (TTR) is a 55 kDa protein responsible for the transport of thyroid hormones and retinol in vertebrates. TTR distributes the two thyroid hormones T3 (3,5,3'-triiodo-L-thyronine) and T4 (Thyroxin, or 3,5,3',5'-tetraiodo-L-thyronine), as well as retinol (vitamin A) through the formation of a macromolecular complex that includes each of these as well as retinol-binding protein. Misfolded forms of TTR are implicated in the amyloid diseases familial amyloidotic polyneuropathy and senile systemic amyloidosis. TTR forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits, which differ in their ligand binding affinity. A negative cooperativity has been observed for the binding of T4 and other TTR ligands. A fraction of plasma TTR is carried in high density lipoproteins by bindi
Probab=86.99 E-value=1.3 Score=35.03 Aligned_cols=54 Identities=13% Similarity=0.108 Sum_probs=40.6
Q ss_pred ceeeEEEC-cCCCCccccEEEEeeee--------EeEeeCCCceEEE-----ecCCceEEEEEEecCc
Q psy17404 250 GVAGFVKG-REGEGVAEASIAVEGLG--------HVVYSAQDGDYWR-----LLAPGNYTLHVSAPGE 303 (305)
Q Consensus 250 gi~G~v~d-~~g~pi~~A~i~i~~~~--------~~~~t~~~G~y~~-----~l~~G~y~l~vs~~Gy 303 (305)
.|+-.|.| ..|.|-++..|.+.... ...+||.||+..- .+.+|.|+|++....|
T Consensus 8 ~ittHVLDt~~G~PAaGV~V~L~~~~~~~~w~~l~~~~Tn~DGR~~~ll~~~~~~~G~Y~l~F~tg~Y 75 (121)
T cd05821 8 PLMVKVLDAVRGSPAANVAVKVFKKTADGSWEPFASGKTTETGEIHGLTTDEQFTEGVYKVEFDTKAY 75 (121)
T ss_pred CcEEEEEECCCCccCCCCEEEEEEecCCCceEEEEEEEECCCCCCCCccCccccCCeeEEEEEehhHh
Confidence 37788999 99999999999995211 2367899999832 2568999999865443
No 124
>cd06226 M14_CPT_like Peptidase M14-like domain of an uncharacterized group of Peptidase M14 Carboxypeptidase (CP) T (CPT)-like proteins. This group belongs to the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPT exhibits dual-substrate specificity by cleaving C-terminal hydrophobic amino acid residues and C-terminal positively charged residues. However, CPT does not belong to this CPT-like group.
Probab=86.29 E-value=1.3 Score=40.78 Aligned_cols=54 Identities=20% Similarity=0.414 Sum_probs=42.3
Q ss_pred HHhhhhhhhccc----------------cccccceecccccceecCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhc
Q psy17404 107 REAVEKWLQDIP----------------FVLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLLASSYANAH 167 (305)
Q Consensus 107 ~~~~~~~~k~~~----------------~~~~~~~~g~dlnrnyp~~~~~~~~p~~~~~~pe~~~~~~l~~~y~~~h 167 (305)
.+++++|.++.. +.+.+++|++.....|||++.. ...|+...++.|++.++..+
T Consensus 163 t~Av~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~HS~g~~i~~P~g~~~-------~~~p~~~~~~~la~~~~~~~ 232 (293)
T cd06226 163 TAALEDYIRGLFPDQRGPGDTDPAPDDTTGVYLDIHSYSNLVLYPWGWTT-------QPAPNDTQLRALGRKFASFN 232 (293)
T ss_pred HHHHHHHHHhccccccccccccccccccceEEEEeccCCCeEeecCcCCC-------CCCCCHHHHHHHHHHHhhcC
Confidence 347888887654 5678999999999999999862 24678888999999887643
No 125
>PF12985 DUF3869: Domain of unknown function (DUF3869); InterPro: IPR024620 This functionally uncharacterised domain is found in bacterial sequences, including the N-terminal region of a putative pore-forming toxin (YP_001301288.1) from Bacteroides vulgatus ATCC 8482.; PDB: 3G3L_A 3KOG_A.
Probab=85.54 E-value=0.79 Score=35.17 Aligned_cols=44 Identities=32% Similarity=0.398 Sum_probs=31.6
Q ss_pred ceeeEEEC-cCCCCcc-ccEEEEeeeeEeEeeCCCceEEEecCCceEEEEEEecCcc
Q psy17404 250 GVAGFVKG-REGEGVA-EASIAVEGLGHVVYSAQDGDYWRLLAPGNYTLHVSAPGED 304 (305)
Q Consensus 250 gi~G~v~d-~~g~pi~-~A~i~i~~~~~~~~t~~~G~y~~~l~~G~y~l~vs~~Gy~ 304 (305)
-|.|.|.| .+|++|. +|.+++.+.. +| .|.++..++.+|+.||.
T Consensus 23 tI~~tV~da~tG~~vt~~a~vti~~~~-------~~----~~A~~a~~vtas~~~y~ 68 (104)
T PF12985_consen 23 TIAGTVYDAETGEDVTTTATVTISAGS-------DG----TLAAKAVTVTASKDGYM 68 (104)
T ss_dssp EEEEEEEETTTTEE-CGCSEEEETTCC-------CC----CE--ECCEEEEEECTCE
T ss_pred EEEEEEEecCCCCeeeccceEEEccCC-------Cc----ccccccEEEEEEccCCe
Confidence 48999999 7999998 8999886432 44 45677778888777775
No 126
>COG2351 Transthyretin-like protein [General function prediction only]
Probab=84.18 E-value=3.5 Score=32.35 Aligned_cols=53 Identities=23% Similarity=0.223 Sum_probs=40.6
Q ss_pred eeeEEEC-cCCCCccccEEEEe---ee----eEeEeeCCCceEEE------ecCCceEEEEEEecCc
Q psy17404 251 VAGFVKG-REGEGVAEASIAVE---GL----GHVVYSAQDGDYWR------LLAPGNYTLHVSAPGE 303 (305)
Q Consensus 251 i~G~v~d-~~g~pi~~A~i~i~---~~----~~~~~t~~~G~y~~------~l~~G~y~l~vs~~Gy 303 (305)
++-.|.| .+|.|-++..|.+. +. -..+.||.||+--. .+.+|.|+|.+...-|
T Consensus 11 LTTHVLDta~GkPAagv~V~L~rl~~~~~~~l~t~~Tn~DGR~d~pll~g~~~~~G~Y~l~F~~gdY 77 (124)
T COG2351 11 LTTHVLDTASGKPAAGVKVELYRLEGNQWELLKTVVTNADGRIDAPLLAGETLATGIYELVFHTGDY 77 (124)
T ss_pred eeeeeeecccCCcCCCCEEEEEEecCCcceeeeEEEecCCCcccccccCccccccceEEEEEEcchh
Confidence 7788999 99999999999986 22 13568999998842 2567889999876544
No 127
>PF13115 YtkA: YtkA-like
Probab=81.84 E-value=6.7 Score=28.52 Aligned_cols=47 Identities=17% Similarity=0.205 Sum_probs=29.4
Q ss_pred eeeEEECcCCCCccccEEEEeeeeE------------eEeeCCCceEEEe--c-CCceEEEEE
Q psy17404 251 VAGFVKGREGEGVAEASIAVEGLGH------------VVYSAQDGDYWRL--L-APGNYTLHV 298 (305)
Q Consensus 251 i~G~v~d~~g~pi~~A~i~i~~~~~------------~~~t~~~G~y~~~--l-~~G~y~l~v 298 (305)
+.-+ .|.+|+||.+|.|.+.-... .......|.|... + -+|.|.|++
T Consensus 24 i~v~-~~~~g~pv~~a~V~~~~~m~~~~g~~~~~~~~~~~~~~~G~Y~~~~~f~m~G~W~i~v 85 (86)
T PF13115_consen 24 ITVT-VDQGGKPVTDADVQFEIWMPDMEGMEPMTSKVELEETGPGVYEAEVTFSMAGTWQITV 85 (86)
T ss_pred EEEE-ECCCCCCCCCCEEEEEEEeCCCCCCCCCceeeeeecCCCCeEEEEeecCCCeeEEEEE
Confidence 3334 67999999999999873211 1111367888432 3 357777775
No 128
>PF12866 DUF3823: Protein of unknown function (DUF3823); InterPro: IPR024278 This is a family of uncharacterised proteins from Bacteroidetes. These proteins have characteristic DN and DR sequence-motifs but their function is not known.; PDB: 3HN5_B 4EIU_A.
Probab=81.54 E-value=3.3 Score=36.44 Aligned_cols=49 Identities=27% Similarity=0.389 Sum_probs=35.5
Q ss_pred ceeeEEEC-cCCCCcc----ccEEEEeee------eEeEeeCCCceE-EEecCCceEEEEE
Q psy17404 250 GVAGFVKG-REGEGVA----EASIAVEGL------GHVVYSAQDGDY-WRLLAPGNYTLHV 298 (305)
Q Consensus 250 gi~G~v~d-~~g~pi~----~A~i~i~~~------~~~~~t~~~G~y-~~~l~~G~y~l~v 298 (305)
.++|+|.| .+|+||. ++.|.+-.. .+.+....||.| ...|=.|.|+|++
T Consensus 23 ~l~G~iiD~~tgE~i~~~~~gv~i~l~e~gy~~~~~~~~~v~qDGtf~n~~lF~G~Yki~~ 83 (222)
T PF12866_consen 23 TLTGRIIDVYTGEPIQTDIGGVRIQLYELGYGDNTPQDVYVKQDGTFRNTKLFDGDYKIVP 83 (222)
T ss_dssp EEEEEEEECCTTEE----STSSEEEEECS-CCG--SEEEEB-TTSEEEEEEE-SEEEEEEE
T ss_pred eEEEEEEEeecCCeeeecCCceEEEEEecccccCCCcceEEccCCceeeeeEeccceEEEE
Confidence 59999999 8998876 456666521 245677999999 6678899999998
No 129
>KOG3006|consensus
Probab=81.25 E-value=3.9 Score=32.12 Aligned_cols=54 Identities=19% Similarity=0.284 Sum_probs=40.3
Q ss_pred ceeeEEEC-cCCCCccccEEEEee-----eeE---eEeeCCCceE-EEe----cCCceEEEEEEecCc
Q psy17404 250 GVAGFVKG-REGEGVAEASIAVEG-----LGH---VVYSAQDGDY-WRL----LAPGNYTLHVSAPGE 303 (305)
Q Consensus 250 gi~G~v~d-~~g~pi~~A~i~i~~-----~~~---~~~t~~~G~y-~~~----l~~G~y~l~vs~~Gy 303 (305)
.|..+|.| ..|.|-.|..|.+-- .+. ...|+++|+- +.. |.||.|++.+--.-|
T Consensus 22 ~itahVLd~s~GsPA~gVqV~~f~~~~~~~w~~igs~~T~~nGrv~~~~~~~tl~~GtYr~~~dT~~Y 89 (132)
T KOG3006|consen 22 PITAHVLDISRGSPAAGVQVHLFILANDDTWTPIGSGFTQDNGRVDWVSPDFTLIPGTYRLVFDTEPY 89 (132)
T ss_pred CcEeEEeecccCCcccceEEEEEEecCCCcccCccccccccCceeecccchhhhccceEEEEEecccc
Confidence 38999999 899999999988851 121 2357899988 442 789999998865444
No 130
>cd06246 M14_CPB2 Peptidase M14 Carboxypeptidase (CP) B2 (CPB2, also known as plasma carboxypeptidase B, carboxypeptidase U, and CPU), belongs to the carboxpeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPB2 enzyme displays B-like activity; it only cleaves the basic residues lysine or arginine. It is produced and secreted by the liver as the inactive precursor, procarboxypeptidase U or PCPB2, commonly referred to as thrombin-activatable fibrinolysis inhibitor (TAFI). It circulates in plasma as a zymogen bound to plasminogen, and the active enzyme, TAFIa, inhibits fibrinolysis. It is highly regulated, increased TAFI concentrations are thought to increase the risk of thrombosis and coronary artery disease by reducing fibrinolytic activity whil
Probab=80.92 E-value=3 Score=38.44 Aligned_cols=61 Identities=20% Similarity=0.291 Sum_probs=44.4
Q ss_pred Hhhhhhhhccc--cccccceecccccceecCCCCCCCCCCCCCCCCcHHHHHHHHHHH----HhhcCccCCCCC
Q psy17404 108 EAVEKWLQDIP--FVLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLLASSY----ANAHKKMYKDPG 175 (305)
Q Consensus 108 ~~~~~~~k~~~--~~~~~~~~g~dlnrnyp~~~~~~~~p~~~~~~pe~~~~~~l~~~y----~~~h~~~~~~~~ 175 (305)
+++++|.++.. +...+++|++.+...|||++... ..|+.+.++.|+..+ ...|+..|..++
T Consensus 171 ~av~~~~~~~~~~i~~~is~Hs~g~~i~~P~~~~~~-------~~~~~~~~~~la~~~~~ai~~~~~~~y~~g~ 237 (300)
T cd06246 171 KAVASFLRRHINQIKAYISMHSYSQMILFPYSYTRS-------KSKDHEELSLLAKEAVRAIRRTSNNRYTHGS 237 (300)
T ss_pred HHHHHHHHhCCcceeEEEEeccCCcEEEeccccCCC-------CCCCHHHHHHHHHHHHHHHHHhhCCCCeecC
Confidence 37888887654 45678999999999999997632 357777788877644 445666676664
No 131
>smart00631 Zn_pept Zn_pept.
Probab=79.27 E-value=2.8 Score=38.07 Aligned_cols=68 Identities=28% Similarity=0.340 Sum_probs=46.7
Q ss_pred HHHhhhhhhhcc-ccccccceecccccceecCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhcCccCCCCC
Q psy17404 106 AREAVEKWLQDI-PFVLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLLASSYANAHKKMYKDPG 175 (305)
Q Consensus 106 ~~~~~~~~~k~~-~~~~~~~~~g~dlnrnyp~~~~~~~~p~~~~~~pe~~~~~~l~~~y~~~h~~~~~~~~ 175 (305)
..+++++|..+. ++...+++|++.....|||++.....|.. .+++..+++.+++++...++..|..+.
T Consensus 160 Et~ai~~~~~~~~~~~~~id~Hs~~~~i~~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~y~~g~ 228 (277)
T smart00631 160 ETKAVRDFIRSNRRFVLYIDLHSYSQLILYPYGYTKNDLPPN--VDDLDAVAKALAKALASVHGTRYTYGI 228 (277)
T ss_pred HHHHHHHHHHhcCCeeEEEEeccCCcEEEecCcCCCCCCCCC--HHHHHHHHHHHHHHHHHhcCCcccccc
Confidence 344778888877 78899999999999999999753321100 011235677888888888776665553
No 132
>cd06247 M14_CPO Peptidase M14 carboxypeptidase (CP) O (CPO, also known as metallocarboxypeptidase C; EC 3.4.17.) belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPO has not been well characterized as yet, and little is known about it. Based on modeling studies, CPO has been suggested to have specificity for acidic residues rather than aliphatic/aromatic residues as in A-like enzymes or basic residues as in B-like enzymes. It remains to be demonstrated that CPO is functional as an MCP.
Probab=78.71 E-value=4.7 Score=37.13 Aligned_cols=62 Identities=16% Similarity=0.285 Sum_probs=43.7
Q ss_pred Hhhhhhhhcccc--ccccceecccccceecCCCCCCCCCCCCCCCCcHHHHHHHH----HHHHhhcCccCCCCCC
Q psy17404 108 EAVEKWLQDIPF--VLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLLA----SSYANAHKKMYKDPGC 176 (305)
Q Consensus 108 ~~~~~~~k~~~~--~~~~~~~g~dlnrnyp~~~~~~~~p~~~~~~pe~~~~~~l~----~~y~~~h~~~~~~~~~ 176 (305)
+++++|.++.++ .+.+++|++.+...|||++... ..|+...++.++ .+....|+..|..|++
T Consensus 170 ~ai~~~~~~~~~~i~~~l~~Hsyg~~i~~P~g~~~~-------~~~n~~~~~~~a~~~~~ai~~~~~~~y~~g~~ 237 (298)
T cd06247 170 KAVARLIESKKSDILCYLTIHSYGQLILLPYGYTKE-------PSSNHEEMMLVAQKAAAALKEKHGTEYRVGSS 237 (298)
T ss_pred HHHHHHHHhcCcceEEEEEeccCCCeEEeCCcCCCC-------CCCCHHHHHHHHHHHHHHHHHhcCCCCccCCc
Confidence 367777776543 4689999999999999998632 345666666554 4555667777887753
No 133
>cd03871 M14_CPB Peptidase M14 Carboxypeptidase B (CPB) belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Carboxypeptidase B (CPB) enzymes only cleave the basic residues lysine or arginine. A/B subfamily enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The procarboxypeptidase B (PCPB) is produced by the exocrine pancreas and stored as stable zymogen in the pancreatic granules until secretion into the digestive tract occurs. PCPB has been reported to be a good serum marker for the diagnosis of acute pancreatitis and graft rejection in pancreas transplant recipients.
Probab=78.59 E-value=4.8 Score=37.14 Aligned_cols=61 Identities=15% Similarity=0.177 Sum_probs=43.3
Q ss_pred Hhhhhhhhccc--cccccceecccccceecCCCCCCCCCCCCCCCCcHHHHHHHHHH----HHhhcCccCCCCC
Q psy17404 108 EAVEKWLQDIP--FVLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLLASS----YANAHKKMYKDPG 175 (305)
Q Consensus 108 ~~~~~~~k~~~--~~~~~~~~g~dlnrnyp~~~~~~~~p~~~~~~pe~~~~~~l~~~----y~~~h~~~~~~~~ 175 (305)
+++++|.++.. +...+++|++.+...|||++... ..|+.+.++.|+++ ....++..|..++
T Consensus 171 ~Al~~~~~~~~~~~~~~l~~HSyg~~i~~Py~~~~~-------~~~~~~~~~~la~~~~~ai~~~~g~~y~~g~ 237 (300)
T cd03871 171 KALADFIRNNLSSIKAYLTIHSYSQMLLYPYSYTYK-------LPENHAELNSVAKGAVKELASLYGTKYTYGP 237 (300)
T ss_pred HHHHHHHHhcCcceeEEEEeccCccEEEecCcCCCC-------CCCCHHHHHHHHHHHHHHHHHhhCCCCcCCc
Confidence 37888887654 45678999999999999997532 34566777777764 4455666666664
No 134
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=77.12 E-value=3.8 Score=28.05 Aligned_cols=18 Identities=44% Similarity=0.735 Sum_probs=13.1
Q ss_pred eE-EEecCCceEEEEEEec
Q psy17404 284 DY-WRLLAPGNYTLHVSAP 301 (305)
Q Consensus 284 ~y-~~~l~~G~y~l~vs~~ 301 (305)
.+ +..|+||+|+|.|.+.
T Consensus 30 ~~~~~~L~~G~Y~l~V~a~ 48 (66)
T PF07495_consen 30 SISYTNLPPGKYTLEVRAK 48 (66)
T ss_dssp EEEEES--SEEEEEEEEEE
T ss_pred EEEEEeCCCEEEEEEEEEE
Confidence 55 5679999999999874
No 135
>cd03872 M14_CPA6 Carboxypeptidase (CP) A6 (CPA6, also known as CPAH; EC 3.4.17.1), belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPA6 prefers large hydrophobic C-terminal amino acids as well as histidine, while peptides with a penultimate glycine or proline are very poorly cleaved. Several neuropeptides are processed by CPA6, including Met- and Leu-enkephalin, angiotensin I, and neurotensin. CPA6 converts enkephalin and neurotensin into forms known to be inactive toward their receptors, but converts inactive angiotensin I into the biologically active angiotensin II. Thus, CPA6 plays a possible role in the regulation of neuropeptides in the extracellular environment within the olfactory bulb where it is highly expresse
Probab=76.05 E-value=5.7 Score=36.62 Aligned_cols=62 Identities=18% Similarity=0.211 Sum_probs=43.6
Q ss_pred Hhhhhhhhcc--ccccccceecccccceecCCCCCCCCCCCCCCCCcHHHHHH----HHHHHHhhcCccCCCCCC
Q psy17404 108 EAVEKWLQDI--PFVLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKL----LASSYANAHKKMYKDPGC 176 (305)
Q Consensus 108 ~~~~~~~k~~--~~~~~~~~~g~dlnrnyp~~~~~~~~p~~~~~~pe~~~~~~----l~~~y~~~h~~~~~~~~~ 176 (305)
+++++|..+. .+.+.+++|++.+...|||++... ..|+...++. .+.++...|+..|..|+.
T Consensus 168 ~al~~~~~~~~~~i~~~ls~Hsyg~~i~~P~g~~~~-------~~~~~~~~~~~~~~~~~ai~~~~~~~Y~~g~~ 235 (300)
T cd03872 168 KAVAQFLRKHRKHVRAYLSFHAYAQMLLYPYSYKYA-------TIPNFGCVESAAYNAVNALQSAYGVRYRYGPA 235 (300)
T ss_pred HHHHHHHHhCCccceEEEEEccCCcEEEecCCCcCC-------CCCChHHHHHHHHHHHHHHHHhhCCCCcccCc
Confidence 3788888764 356789999999999999998632 2344444444 445666678888888864
No 136
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=72.73 E-value=11 Score=27.29 Aligned_cols=49 Identities=24% Similarity=0.383 Sum_probs=26.8
Q ss_pred ceeeEEECcCCCCccccEEEEeee-eEeEe---eCCCceEEEecCCceEEEEEEec
Q psy17404 250 GVAGFVKGREGEGVAEASIAVEGL-GHVVY---SAQDGDYWRLLAPGNYTLHVSAP 301 (305)
Q Consensus 250 gi~G~v~d~~g~pi~~A~i~i~~~-~~~~~---t~~~G~y~~~l~~G~y~l~vs~~ 301 (305)
.++-.|+|++|+.|....+.-... .+.+. +|.+|. .+|+|.|++.|.+.
T Consensus 26 ~v~v~I~d~~G~~V~t~~~~~~~~G~~~~~WdG~d~~G~---~~~~G~Y~~~v~a~ 78 (81)
T PF13860_consen 26 NVTVTIYDSNGQVVRTISLGSQSAGEHSFTWDGKDDDGN---PVPDGTYTFRVTAT 78 (81)
T ss_dssp EEEEEEEETTS-EEEEEEEEECSSEEEEEEE-SB-TTS----B--SEEEEEEEEEE
T ss_pred EEEEEEEcCCCCEEEEEEcCCcCCceEEEEECCCCCCcC---CCCCCCEEEEEEEE
Confidence 367789999999885333322110 11111 257773 58999999999763
No 137
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=71.73 E-value=1.9 Score=40.96 Aligned_cols=34 Identities=62% Similarity=1.130 Sum_probs=29.9
Q ss_pred HHhhhhhhhccccccccceecccccceecCCCCC
Q psy17404 107 REAVEKWLQDIPFVLSANLHGGSLVANYPYDDNQ 140 (305)
Q Consensus 107 ~~~~~~~~k~~~~~~~~~~~g~dlnrnyp~~~~~ 140 (305)
.+++++|.++.+|.+++++||+.+..+|||++..
T Consensus 155 t~av~~~~~~~~~~l~~~lH~~~~~~~yP~~~~~ 188 (372)
T cd03868 155 TVAMMKWIRSNPFVLSGNLHGGSVVASYPYDDSS 188 (372)
T ss_pred HHHHHHHHhhCCcEEEEEccCccEEEeccccccC
Confidence 3478889988899999999999999999999863
No 138
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=69.69 E-value=11 Score=29.35 Aligned_cols=37 Identities=16% Similarity=0.203 Sum_probs=27.7
Q ss_pred ccEEEEeeeeEeEeeCCCceEEEecCCceEEEEEEecC
Q psy17404 265 EASIAVEGLGHVVYSAQDGDYWRLLAPGNYTLHVSAPG 302 (305)
Q Consensus 265 ~A~i~i~~~~~~~~t~~~G~y~~~l~~G~y~l~vs~~G 302 (305)
...|.|.|...+ .+..+++|+..++||.|+|.++...
T Consensus 42 ~~~v~vdg~~ig-~l~~g~y~~~~v~pG~h~i~~~~~~ 78 (117)
T PF11008_consen 42 KPDVYVDGELIG-ELKNGGYFYVEVPPGKHTISAKSEF 78 (117)
T ss_pred cceEEECCEEEE-EeCCCeEEEEEECCCcEEEEEecCc
Confidence 367888775554 3566666688999999999997653
No 139
>cd03860 M14_CP_A-B_like The Peptidase M14 Carboxypeptidase (CP) A/B subfamily is one of two main M14 CP subfamilies defined by sequence and structural homology, the other being the N/E subfamily. CPs hydrolyze single, C-terminal amino acids from polypeptide chains. They have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. There are nine members in the A/B family: CPA1, CPA2, CPA3, CPA4, CPA5, CPA6, CPB, CPO and CPU. CPA1, CPA2 and CPB are produced by the
Probab=68.24 E-value=8.8 Score=35.14 Aligned_cols=63 Identities=17% Similarity=0.224 Sum_probs=46.0
Q ss_pred HHHhhhhhhhcc--ccccccceecccccceecCCCCCCCCCCCCCCCCcHHHHHHHHHHHHh----hcCccCCCCC
Q psy17404 106 AREAVEKWLQDI--PFVLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLLASSYAN----AHKKMYKDPG 175 (305)
Q Consensus 106 ~~~~~~~~~k~~--~~~~~~~~~g~dlnrnyp~~~~~~~~p~~~~~~pe~~~~~~l~~~y~~----~h~~~~~~~~ 175 (305)
..+++++|.++. ++.+.+++|+......|||++.. ..+|+.+.++.|+..++. .|+..|..++
T Consensus 163 Et~al~~~~~~~~~~~~~~ld~Hs~~~~i~~P~~~~~-------~~~~d~~~~~~la~~~~~~~~~~~g~~Y~~g~ 231 (294)
T cd03860 163 ETRAVRDFLLSLRGRIKAYLSLHSYGQLILYPWGYTS-------ELPPNYEDLREVAKAAADAIRAVYGTRYTVGS 231 (294)
T ss_pred HHHHHHHHHHhccccEEEEEEeccCCceEEcCCCCCC-------CCCCCHHHHHHHHHHHHHHHHHhcCCCCcccc
Confidence 344788888777 68899999999999999999752 246777888888765543 4455565554
No 140
>KOG2650|consensus
Probab=68.04 E-value=4.7 Score=38.88 Aligned_cols=60 Identities=18% Similarity=0.212 Sum_probs=42.2
Q ss_pred hhhhhhhcc--ccccccceecccccceecCCCCCCCCCCCCCCCCcHHHHHHH----HHHHHhhcCccCCCCC
Q psy17404 109 AVEKWLQDI--PFVLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLL----ASSYANAHKKMYKDPG 175 (305)
Q Consensus 109 ~~~~~~k~~--~~~~~~~~~g~dlnrnyp~~~~~~~~p~~~~~~pe~~~~~~l----~~~y~~~h~~~~~~~~ 175 (305)
+++++.... ++..++++|++.+...|||++... ..++.+.+..+ +++....++.-|+.|+
T Consensus 290 av~~fi~~~~~~i~~yislHSYsQ~llyPyg~~~~-------~~~~~~dl~~va~~a~~ai~~~~gt~Y~~G~ 355 (418)
T KOG2650|consen 290 AVRDFITSFENNIKAYISLHSYSQLLLYPYGYTND-------LPEDYEDLQEVARAAADALKSVYGTKYTVGS 355 (418)
T ss_pred HHHHHHHhcCcceEEEEEecccceeEEecccccCC-------CCCCHHHHHHHHHHHHHHHHHHhCCEEEecc
Confidence 667776653 257889999999999999998642 12444445544 4566667888888775
No 141
>PF05751 FixH: FixH; InterPro: IPR008620 This family consists of several Rhizobium FixH like proteins. It has been suggested that the four proteins FixG, FixH, FixI, and FixS may participate in a membrane-bound complex coupling the FixI cation pump with a redox process catalysed by FixG [].
Probab=67.46 E-value=29 Score=27.82 Aligned_cols=49 Identities=16% Similarity=0.264 Sum_probs=36.7
Q ss_pred ceeeEEECcCCCCccccEEEEe---------eeeEeEeeCCCceEEEe---cCCceEEEEE
Q psy17404 250 GVAGFVKGREGEGVAEASIAVE---------GLGHVVYSAQDGDYWRL---LAPGNYTLHV 298 (305)
Q Consensus 250 gi~G~v~d~~g~pi~~A~i~i~---------~~~~~~~t~~~G~y~~~---l~~G~y~l~v 298 (305)
.+.=++.|.+|.|+.++.+++. ..+.......+|.|... +.+|.+.|.+
T Consensus 70 ~~~i~~~d~~g~~~~~~~~~l~l~rp~~~~~D~~~~l~~~~~g~y~~~~~~~~~G~W~l~l 130 (146)
T PF05751_consen 70 SLTIRLTDPNGAPVSGAKLTLSLYRPTDAKLDFTLTLTESAPGVYRAPVPLLKKGRWYLRL 130 (146)
T ss_pred eEEEEEEcCCCCcCcCceEEEEEECCCCccCCeeEEeeECCCceEEEEcCCCCCccEEEEE
Confidence 3677788899999999999885 11223445789999553 5679999988
No 142
>PF13953 PapC_C: PapC C-terminal domain; PDB: 3L48_E 2XET_A 3RFZ_E 2KT6_A.
Probab=64.42 E-value=13 Score=26.04 Aligned_cols=45 Identities=24% Similarity=0.276 Sum_probs=22.9
Q ss_pred EEECcCCCCccc-cEEEEeeeeEeEeeCCCceEEEe-cCCceEEEEEE
Q psy17404 254 FVKGREGEGVAE-ASIAVEGLGHVVYSAQDGDYWRL-LAPGNYTLHVS 299 (305)
Q Consensus 254 ~v~d~~g~pi~~-A~i~i~~~~~~~~t~~~G~y~~~-l~~G~y~l~vs 299 (305)
++++++|+|||. |.|.............+|.-++. ++ ..=+|+|+
T Consensus 2 ~l~~~~G~~lPfGA~v~~~~g~~~g~Vg~~G~vyl~~~~-~~~~L~V~ 48 (68)
T PF13953_consen 2 TLRDADGKPLPFGASVSDEDGNNIGIVGQDGQVYLSGLP-PKGTLTVK 48 (68)
T ss_dssp EEEETTSEE--TT-EEEETTSSEEEEB-GCGEEEEEEE--TCEEEEEE
T ss_pred EEEcCCCCcCCCCcEEEcCCCCEEEEEcCCCEEEEECCC-CCcEEEEE
Confidence 467889988774 56665433333455777777655 54 33334433
No 143
>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli. These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].
Probab=63.44 E-value=10 Score=24.74 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=18.7
Q ss_pred eeeEEECcCCCCccccEEEEe
Q psy17404 251 VAGFVKGREGEGVAEASIAVE 271 (305)
Q Consensus 251 i~G~v~d~~g~pi~~A~i~i~ 271 (305)
++=+++|.+|.|++++.+.|+
T Consensus 17 ltVt~kda~G~pv~n~~f~l~ 37 (47)
T PF05688_consen 17 LTVTVKDANGNPVPNAPFTLT 37 (47)
T ss_pred EEEEEECCCCCCcCCceEEEE
Confidence 677789999999999999984
No 144
>cd06228 Peptidase_M14-like_3 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=62.33 E-value=18 Score=33.83 Aligned_cols=67 Identities=18% Similarity=0.132 Sum_probs=44.4
Q ss_pred hhhhhhhccc-cccccceecccccceecCCCCCCC--CCC--------------------C---CCCCCcHHHHHHHH--
Q psy17404 109 AVEKWLQDIP-FVLSANLHGGSLVANYPYDDNQAM--KPQ--------------------V---DSPTPDDSIFKLLA-- 160 (305)
Q Consensus 109 ~~~~~~k~~~-~~~~~~~~g~dlnrnyp~~~~~~~--~p~--------------------~---~~~~pe~~~~~~l~-- 160 (305)
+++++.++.+ +.+.+++|++.....|||+++... .|. . +...++.+.+..++
T Consensus 171 av~~~~~~~~~~~~yls~HSygq~il~P~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~ 250 (332)
T cd06228 171 NVVWVMDTFKNIRWFVDLHSYGGDVLYSWGDDENQSTNPAMNFMNPAYDGKRGIVAAPDTRYGEYIDSDDWDAAVNLAAR 250 (332)
T ss_pred HHHHHHhccCCeEEEEEeccCCceEEecccCCccccccccccccccccccccccccccccccccccCCCCHHHHHHHHHH
Confidence 6776666654 678999999999999999987321 110 0 12245555555554
Q ss_pred --HHHHhhcCccCCCCC
Q psy17404 161 --SSYANAHKKMYKDPG 175 (305)
Q Consensus 161 --~~y~~~h~~~~~~~~ 175 (305)
.++..+|+..|..++
T Consensus 251 ~~~ai~~~~g~~Y~~g~ 267 (332)
T cd06228 251 MGLAMAAARGRIYTVSQ 267 (332)
T ss_pred HHHHHHHHhCCCceeCC
Confidence 456667888888775
No 145
>PF14734 DUF4469: Domain of unknown function (DUF4469) with IG-like fold
Probab=61.89 E-value=35 Score=26.20 Aligned_cols=11 Identities=64% Similarity=0.972 Sum_probs=8.7
Q ss_pred cCCceEEEEEE
Q psy17404 289 LAPGNYTLHVS 299 (305)
Q Consensus 289 l~~G~y~l~vs 299 (305)
|+.|.|+|.|.
T Consensus 74 L~~G~Y~l~V~ 84 (102)
T PF14734_consen 74 LAAGEYTLEVR 84 (102)
T ss_pred cCceEEEEEEE
Confidence 66788988875
No 146
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=60.37 E-value=37 Score=25.10 Aligned_cols=42 Identities=33% Similarity=0.481 Sum_probs=27.3
Q ss_pred eeeEEECcCCCCccccEEEEeeeeEeEeeCCCceEEE---ecCCceEEEEEEecC
Q psy17404 251 VAGFVKGREGEGVAEASIAVEGLGHVVYSAQDGDYWR---LLAPGNYTLHVSAPG 302 (305)
Q Consensus 251 i~G~v~d~~g~pi~~A~i~i~~~~~~~~t~~~G~y~~---~l~~G~y~l~vs~~G 302 (305)
++-.|.+.+|..++ + .+.-+.+|.|.. .-.+|.|+|.|.+-|
T Consensus 34 ~~v~i~~p~g~~~~---~-------~v~d~~dGty~v~y~P~~~G~~~i~V~~~g 78 (93)
T smart00557 34 LEVEVTGPSGKKVP---V-------EVKDNGDGTYTVSYTPTEPGDYTVTVKFGG 78 (93)
T ss_pred EEEEEECCCCCeeE---e-------EEEeCCCCEEEEEEEeCCCEeEEEEEEECC
Confidence 56666666664332 1 234477899944 345699999999876
No 147
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=58.01 E-value=50 Score=24.42 Aligned_cols=50 Identities=22% Similarity=0.324 Sum_probs=29.7
Q ss_pred eeeEEECcC--CCCccccEEEEe-----ee---eEeE-eeCCCceEEE--ecC----CceEEEEEEe
Q psy17404 251 VAGFVKGRE--GEGVAEASIAVE-----GL---GHVV-YSAQDGDYWR--LLA----PGNYTLHVSA 300 (305)
Q Consensus 251 i~G~v~d~~--g~pi~~A~i~i~-----~~---~~~~-~t~~~G~y~~--~l~----~G~y~l~vs~ 300 (305)
+++.+.|.+ ..+..+..+.+. |. .... .++..|.|.. .|| .|.|+|.+..
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~ 85 (99)
T PF01835_consen 19 FRAIVRDLDNDFKPPANSPVTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKT 85 (99)
T ss_dssp EEEEEEEECTTCSCESSEEEEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEE
T ss_pred EEEEEeccccccccccCCceEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEE
Confidence 667766755 345555555554 22 1234 4588998833 343 5999999988
No 148
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=57.84 E-value=9.6 Score=28.69 Aligned_cols=45 Identities=24% Similarity=0.277 Sum_probs=23.4
Q ss_pred eeEEECcCCCCccccEEEEee--eeEeEeeCCCceEEEecCCceEEEEEEecC
Q psy17404 252 AGFVKGREGEGVAEASIAVEG--LGHVVYSAQDGDYWRLLAPGNYTLHVSAPG 302 (305)
Q Consensus 252 ~G~v~d~~g~pi~~A~i~i~~--~~~~~~t~~~G~y~~~l~~G~y~l~vs~~G 302 (305)
+=+|+|.+|+.+......+.+ ....+.... .|++|.|+|..+..+
T Consensus 36 ~v~v~~~~g~~v~~~~~~~~~~~~~~~~~l~~------~l~~G~YtV~wrvvs 82 (97)
T PF04234_consen 36 SVTVTDPDGKRVDLGEPTVDGDGKTLTVPLPP------PLPPGTYTVSWRVVS 82 (97)
T ss_dssp EEEEEEEEETTSCTCEEEEEESTTEEEEEESS---------SEEEEEEEEEEE
T ss_pred EEEEEcCCCceeecCcceecCCceEEEEECCC------CCCCceEEEEEEEEe
Confidence 445677777776655555543 111111111 278899999877654
No 149
>COG1470 Predicted membrane protein [Function unknown]
Probab=54.14 E-value=30 Score=33.80 Aligned_cols=52 Identities=17% Similarity=0.304 Sum_probs=43.1
Q ss_pred eeeEEECcCCCCccccEEEEeeeeEeEeeCCCceEEEecCCceEEEEEEecC-cc
Q psy17404 251 VAGFVKGREGEGVAEASIAVEGLGHVVYSAQDGDYWRLLAPGNYTLHVSAPG-ED 304 (305)
Q Consensus 251 i~G~v~d~~g~pi~~A~i~i~~~~~~~~t~~~G~y~~~l~~G~y~l~vs~~G-y~ 304 (305)
++-++.|.+|.+++.|-+.... ...-|+..|+=.+.+.||.|.+.+...| |+
T Consensus 189 ~~l~~vd~~G~gv~~~~v~~g~--e~~ets~~g~~~~e~t~g~y~~~i~~~g~ye 241 (513)
T COG1470 189 SKLRLVDDDGAGVPKALVKDGN--ESFETSSKGNLEVEITPGKYVVLIAKKGIYE 241 (513)
T ss_pred EEEEEEccCCCccchheeecCc--eeEEeecccceeEEecCcceEEEecccccee
Confidence 6778999999999999888742 3345788888888899999999999999 54
No 150
>PF07411 DUF1508: Domain of unknown function (DUF1508); InterPro: IPR010879 This domain is found in a family of proteins, which have no known function. Members of this family are often found as tandem repeats and in some cases represent the whole protein.; PDB: 3BID_H 2K49_A 2K8E_A 2K7I_A.
Probab=54.03 E-value=8.7 Score=25.20 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=19.4
Q ss_pred CCCceEEEecCCceEEEEEEecCccC
Q psy17404 280 AQDGDYWRLLAPGNYTLHVSAPGEDQ 305 (305)
Q Consensus 280 ~~~G~y~~~l~~G~y~l~vs~~Gy~~ 305 (305)
|.+|.|...|..+.-++.++..||.+
T Consensus 1 d~~g~~~f~L~a~ng~viasse~Y~s 26 (49)
T PF07411_consen 1 DSDGQFRFRLKAGNGEVIASSEGYSS 26 (49)
T ss_dssp ETTSEEEEEEE-TTS-EEEEBEEBSS
T ss_pred CCCCCEEEEEEcCCCCEEEecCCcCC
Confidence 46889977777888888889999864
No 151
>COG3422 Uncharacterized conserved protein [Function unknown]
Probab=51.53 E-value=26 Score=23.93 Aligned_cols=29 Identities=21% Similarity=0.406 Sum_probs=24.7
Q ss_pred EeeCCCceEEEecCCceEEEEEEecCccC
Q psy17404 277 VYSAQDGDYWRLLAPGNYTLHVSAPGEDQ 305 (305)
Q Consensus 277 ~~t~~~G~y~~~l~~G~y~l~vs~~Gy~~ 305 (305)
+.-|.+|.|...|...+-++.++..||++
T Consensus 7 i~kdk~Ge~rfrlkA~N~eiI~~sEgY~s 35 (59)
T COG3422 7 IYKDKAGEYRFRLKAANGEIILTSEGYKS 35 (59)
T ss_pred EEEcCCCcEEEEEEccCccEEEeecccch
Confidence 45699999988888889899999999974
No 152
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=50.31 E-value=79 Score=23.22 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=19.0
Q ss_pred eeCCCceEEEe---cCCceEEEEEEecC
Q psy17404 278 YSAQDGDYWRL---LAPGNYTLHVSAPG 302 (305)
Q Consensus 278 ~t~~~G~y~~~---l~~G~y~l~vs~~G 302 (305)
.-+.+|.|... -.+|.|+|.|.+.|
T Consensus 65 ~~~~~G~y~v~y~p~~~G~y~i~V~~~g 92 (101)
T PF00630_consen 65 IDNGDGTYTVSYTPTEPGKYKISVKING 92 (101)
T ss_dssp EEESSSEEEEEEEESSSEEEEEEEEESS
T ss_pred EECCCCEEEEEEEeCccEeEEEEEEECC
Confidence 34678999443 45799999999876
No 153
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=49.78 E-value=69 Score=23.45 Aligned_cols=41 Identities=20% Similarity=0.088 Sum_probs=23.9
Q ss_pred cccEEEEe--eeeEe-EeeCCCceEEEecC-----CceEEEEEEecCccC
Q psy17404 264 AEASIAVE--GLGHV-VYSAQDGDYWRLLA-----PGNYTLHVSAPGEDQ 305 (305)
Q Consensus 264 ~~A~i~i~--~~~~~-~~t~~~G~y~~~l~-----~G~y~l~vs~~Gy~~ 305 (305)
+|+.|.+. |.-.+ ..++ .|.+.+.|+ +|.|+|++..-.|.+
T Consensus 26 ~gs~ValS~dg~l~G~ai~~-sG~ati~l~~~it~~~~~tlTit~~n~~t 74 (81)
T PF03785_consen 26 PGSYVALSQDGDLYGKAIVN-SGNATINLTNPITDEGTLTLTITAFNYVT 74 (81)
T ss_dssp TT-EEEEEETTEEEEEEE-B-TTEEEEE-SS--TT-SEEEEEEE-TTB--
T ss_pred CCcEEEEecCCEEEEEEEec-CceEEEECCcccCCCceEEEEEEEEccEE
Confidence 45555554 43333 3456 999988877 689999999877754
No 154
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=49.69 E-value=34 Score=24.68 Aligned_cols=35 Identities=11% Similarity=0.116 Sum_probs=24.3
Q ss_pred eEEECcCCCCccccEEEEeeee--------EeEeeCCCceEEEe
Q psy17404 253 GFVKGREGEGVAEASIAVEGLG--------HVVYSAQDGDYWRL 288 (305)
Q Consensus 253 G~v~d~~g~pi~~A~i~i~~~~--------~~~~t~~~G~y~~~ 288 (305)
|++.= .|+|++++.|.+-... ..+.||.+|.|.+.
T Consensus 2 G~L~C-~~~P~~~~~V~L~e~d~~~~Ddll~~~~Td~~G~F~l~ 44 (80)
T PF01060_consen 2 GQLMC-GGKPAKNVKVKLWEDDYFDPDDLLDETKTDSDGNFELS 44 (80)
T ss_pred eEEEe-CCccCCCCEEEEEECCCCCCCceeEEEEECCCceEEEE
Confidence 45443 5789999988885322 24678999999664
No 155
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=49.24 E-value=16 Score=35.56 Aligned_cols=23 Identities=13% Similarity=0.277 Sum_probs=19.9
Q ss_pred ceEEEecCCceEEEEEEecCccC
Q psy17404 283 GDYWRLLAPGNYTLHVSAPGEDQ 305 (305)
Q Consensus 283 G~y~~~l~~G~y~l~vs~~Gy~~ 305 (305)
=+|.+.++-|+|.|.|+|.||+.
T Consensus 90 p~f~~Pvp~G~~sV~isceG~q~ 112 (465)
T PF01690_consen 90 PMFVFPVPKGKWSVEISCEGYQA 112 (465)
T ss_pred eEEEEecCCceEEEEEEecceec
Confidence 45677899999999999999974
No 156
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=49.12 E-value=45 Score=22.09 Aligned_cols=27 Identities=33% Similarity=0.465 Sum_probs=19.1
Q ss_pred EeEeeCCCceEEEe---cCCceEEEEEEec
Q psy17404 275 HVVYSAQDGDYWRL---LAPGNYTLHVSAP 301 (305)
Q Consensus 275 ~~~~t~~~G~y~~~---l~~G~y~l~vs~~ 301 (305)
..+..+.+|.+... +..|.|.+++++.
T Consensus 4 ~~~t~~~~G~Ws~t~~~~~dG~y~itv~a~ 33 (54)
T PF13754_consen 4 YTTTVDSDGNWSFTVPALADGTYTITVTAT 33 (54)
T ss_pred EEEEECCCCcEEEeCCCCCCccEEEEEEEE
Confidence 34556888988654 3459999998763
No 157
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=48.69 E-value=23 Score=31.28 Aligned_cols=47 Identities=28% Similarity=0.410 Sum_probs=26.7
Q ss_pred eeeEEECcCCCCccccEEE-Ee-ee---eEeEeeCCCceEEEecCCceEEEEEEec
Q psy17404 251 VAGFVKGREGEGVAEASIA-VE-GL---GHVVYSAQDGDYWRLLAPGNYTLHVSAP 301 (305)
Q Consensus 251 i~G~v~d~~g~pi~~A~i~-i~-~~---~~~~~t~~~G~y~~~l~~G~y~l~vs~~ 301 (305)
++=+|.|++|+.|....+- .. |. .++- .|.+|. .+|+|.|++.|++.
T Consensus 128 vti~I~D~~G~~Vrt~~lg~~~aG~~~f~WDG-~d~~G~---~lp~G~Yt~~V~A~ 179 (225)
T PRK06655 128 VTVTITDSAGQVVRTIDLGAQSAGVVSFTWDG-TDTDGN---ALPDGNYTIKASAS 179 (225)
T ss_pred EEEEEEcCCCCEEEEEecCCcCCCceeEEECC-CCCCCC---cCCCeeEEEEEEEE
Confidence 5567888888877533321 11 21 1111 255662 37889998888753
No 158
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
Probab=45.21 E-value=11 Score=35.75 Aligned_cols=34 Identities=71% Similarity=1.275 Sum_probs=29.6
Q ss_pred HHhhhhhhhccccccccceecccccceecCCCCC
Q psy17404 107 REAVEKWLQDIPFVLSANLHGGSLVANYPYDDNQ 140 (305)
Q Consensus 107 ~~~~~~~~k~~~~~~~~~~~g~dlnrnyp~~~~~ 140 (305)
.+++++|.++.+|.+.+++|++.+...|||++..
T Consensus 156 t~al~~~~~~~~~~~~i~~Hs~~~~~~yp~~~~~ 189 (374)
T cd03858 156 TKAVMNWIKSIPFVLSANLHGGALVANYPYDDSP 189 (374)
T ss_pred HHHHHHHHhhCCceEEEEccCCceEEEcccccCC
Confidence 3477888888889999999999999999999863
No 159
>PRK15310 fimbrial outer membrane usher protein TcfC; Provisional
Probab=44.72 E-value=43 Score=35.30 Aligned_cols=39 Identities=13% Similarity=0.043 Sum_probs=31.5
Q ss_pred ceeeEEECcCCCCccccEEEEeeeeEeEeeCCCceEEEecCC
Q psy17404 250 GVAGFVKGREGEGVAEASIAVEGLGHVVYSAQDGDYWRLLAP 291 (305)
Q Consensus 250 gi~G~v~d~~g~pi~~A~i~i~~~~~~~~t~~~G~y~~~l~~ 291 (305)
.+.|+++|.+|.|+.+|.|.= .+.+.||++|.|...++-
T Consensus 787 ~yiGr~~~~~G~~l~~a~IlN---~~~~~td~~GgF~~d~d~ 825 (895)
T PRK15310 787 LYVGRVLDKDGRPLLDAQPLN---YPFLSLGPSGRFSLQSEH 825 (895)
T ss_pred EEEEEEECCCCCCcccceeec---CccceecCCCCEEEEccc
Confidence 478999999999999987743 334789999999887643
No 160
>PRK12633 flgD flagellar basal body rod modification protein; Provisional
Probab=42.52 E-value=35 Score=30.15 Aligned_cols=45 Identities=29% Similarity=0.370 Sum_probs=27.5
Q ss_pred eeeEEECcCCCCccccEEEEe----ee---eEeEeeCCCceEEEecCCceEEEEEEec
Q psy17404 251 VAGFVKGREGEGVAEASIAVE----GL---GHVVYSAQDGDYWRLLAPGNYTLHVSAP 301 (305)
Q Consensus 251 i~G~v~d~~g~pi~~A~i~i~----~~---~~~~~t~~~G~y~~~l~~G~y~l~vs~~ 301 (305)
++=.|+|++|+.|. ++.+. |. .++- .|.+|. .+|+|.|++.|++.
T Consensus 131 v~v~I~D~~G~vV~--t~~lg~~~aG~~~f~WDG-~d~~G~---~~~~G~Y~~~V~a~ 182 (230)
T PRK12633 131 VTVKVLDPSGAVVR--TMELGDLKTGVHTLQWDG-NNDGGQ---PLADGKYSITVSAS 182 (230)
T ss_pred EEEEEEeCCCCEEE--EEecCCCCCCceeEEECC-CCCCCC---cCCCcceEEEEEEE
Confidence 66678888888875 33332 11 1111 255562 37889999999763
No 161
>PF07523 Big_3: Bacterial Ig-like domain (group 3); InterPro: IPR011080 This entry represents bacterial domains with an Ig-like fold. These domains are found in a variety of bacterial surface proteins.; PDB: 2L7Y_A 2KPN_A.
Probab=41.29 E-value=28 Score=24.02 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=24.3
Q ss_pred ceeeEEECcCCCCccccEEEEeeeeEeEeeCCCceEEEecCCceEEEEEEecCc
Q psy17404 250 GVAGFVKGREGEGVAEASIAVEGLGHVVYSAQDGDYWRLLAPGNYTLHVSAPGE 303 (305)
Q Consensus 250 gi~G~v~d~~g~pi~~A~i~i~~~~~~~~t~~~G~y~~~l~~G~y~l~vs~~Gy 303 (305)
++.-.++|++|..++...+.+.+ ..-.-.+|.|+|++++.|.
T Consensus 18 ~~~v~at~~dG~~~~~~~~~vs~------------~~d~~~~G~y~Vt~~y~~~ 59 (67)
T PF07523_consen 18 GLFVTATYSDGTSLPLSDVTVSG------------TVDTSKAGTYTVTYTYKGV 59 (67)
T ss_dssp CHEEEEEETTS-ES-GCCSEEES---------------TTS-CCEEEEEEECTE
T ss_pred CCEEEEEEcCCCEeceeeeEEEe------------eeecCCCceEEEEEEECCE
Confidence 34445667888887766666655 1112357888998888763
No 162
>PF14054 DUF4249: Domain of unknown function (DUF4249)
Probab=40.58 E-value=55 Score=29.48 Aligned_cols=43 Identities=30% Similarity=0.634 Sum_probs=26.8
Q ss_pred CccccEEEE-ee-eeEeE-ee--CCC-ceEE-E---ecCCce-EEEEEEecCcc
Q psy17404 262 GVAEASIAV-EG-LGHVV-YS--AQD-GDYW-R---LLAPGN-YTLHVSAPGED 304 (305)
Q Consensus 262 pi~~A~i~i-~~-~~~~~-~t--~~~-G~y~-~---~l~~G~-y~l~vs~~Gy~ 304 (305)
++.+|+|.| .+ ..... .. +.+ |.|. . .+.+|. |+|.|+.+|.+
T Consensus 59 ~v~~A~V~i~~~~~~~~~~~~~~~~~~g~Y~~~~~~~~~~G~~Y~L~V~~~~~~ 112 (298)
T PF14054_consen 59 PVSGATVTIYEDGQGNEYLFEESSNNDGVYYSSNSFRGRPGRTYRLEVETPGGK 112 (298)
T ss_pred ccCCcEEEEEeCCCcceEeecccCCCcceEEecccccccCCCEEEEEEEECCCC
Confidence 499999999 32 22221 12 222 7776 2 355666 99999996654
No 163
>COG4932 Predicted outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=38.82 E-value=38 Score=37.07 Aligned_cols=47 Identities=28% Similarity=0.358 Sum_probs=36.6
Q ss_pred eeeEEEC-cCCCCccccEEEEe---eee--EeEeeCCCceEEEe-cCCceEEEE
Q psy17404 251 VAGFVKG-REGEGVAEASIAVE---GLG--HVVYSAQDGDYWRL-LAPGNYTLH 297 (305)
Q Consensus 251 i~G~v~d-~~g~pi~~A~i~i~---~~~--~~~~t~~~G~y~~~-l~~G~y~l~ 297 (305)
+.=..+| ++|+.++||.-.+. |.. -...||++|.-.+. |.||.|.+.
T Consensus 1065 V~L~K~D~at~~~LaGA~FeLQdk~G~~l~enL~TD~~G~v~itdLaPGDYqfV 1118 (1531)
T COG4932 1065 VQLTKKDSATGATLAGAEFELQDKDGNTLQENLTTDEDGKVEITDLAPGDYQFV 1118 (1531)
T ss_pred eeEEEecccccccccCceEEEeeccCcchhhhccccccCcEEeccccCCceeeE
Confidence 4445556 99999999999997 322 24678999999775 999999864
No 164
>cd06905 Peptidase_M14-like_8 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=38.48 E-value=50 Score=31.30 Aligned_cols=53 Identities=25% Similarity=0.219 Sum_probs=36.8
Q ss_pred hhhhhhhcc-ccccccceecccccceecCCCCCCCCCCCCCCCCcHHHHHHHHHHHHh
Q psy17404 109 AVEKWLQDI-PFVLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLLASSYAN 165 (305)
Q Consensus 109 ~~~~~~k~~-~~~~~~~~~g~dlnrnyp~~~~~~~~p~~~~~~pe~~~~~~l~~~y~~ 165 (305)
++++|.+++ ++.+.+++|++.+...|||++.... ....++...++.++.....
T Consensus 241 av~~~~~~~~~i~~~is~Hsyg~~il~P~g~~~~~----~~~~~~~~~~~~la~~~~~ 294 (360)
T cd06905 241 AVVEFWTDHPNINGFISYHTYSGVILRPYSDKPDD----QMPVDDLELYKALGEKGEE 294 (360)
T ss_pred HHHHHHhcCCCeEEEEEecCCcCeeeeCCCCCcCc----CCChhhHHHHHHHHHHHHH
Confidence 788888765 3568899999999999999986321 1123455666777765543
No 165
>PF09154 DUF1939: Domain of unknown function (DUF1939); InterPro: IPR015237 This entry represents a C-terminal domain associated with prokaryotic alpha-amylases. It adopts a secondary structure consisting of an eight-stranded antiparallel beta-sheet containing a Greek key motif. Its exact function has not, as yet, been determined []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1MXD_A 1MWO_A 1MXG_A 1W9X_A 2DIE_A 1VJS_A 1BPL_B 1BLI_A 1OB0_A 1E3Z_A ....
Probab=38.26 E-value=47 Score=22.53 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=17.0
Q ss_pred eEeeCCCceEEEecCCceEEEE
Q psy17404 276 VVYSAQDGDYWRLLAPGNYTLH 297 (305)
Q Consensus 276 ~~~t~~~G~y~~~l~~G~y~l~ 297 (305)
.+++|++|.=.+.+||++|.|-
T Consensus 35 ~vtid~dG~~~f~v~~~s~SVW 56 (57)
T PF09154_consen 35 TVTIDEDGWGEFPVPPGSVSVW 56 (57)
T ss_dssp EEEE-TTSEEEEEE-TTEEEEE
T ss_pred eEEECCCeEEEEEECCCEEEEe
Confidence 5788999988889999999873
No 166
>PF07550 DUF1533: Protein of unknown function (DUF1533); InterPro: IPR011432 This domain is found duplicated in proteins of unknown function. The proteins typically also contain leucine-rich repeats.
Probab=37.36 E-value=29 Score=24.02 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=14.1
Q ss_pred CCceEEEEEEecCccC
Q psy17404 290 APGNYTLHVSAPGEDQ 305 (305)
Q Consensus 290 ~~G~y~l~vs~~Gy~~ 305 (305)
..|.|+|+|++.||+.
T Consensus 45 ~~G~~~I~I~A~GY~d 60 (65)
T PF07550_consen 45 KDGENTIVIKATGYKD 60 (65)
T ss_pred cCCceEEEEEeCCccc
Confidence 5799999999999974
No 167
>smart00771 ZipA_C ZipA, C-terminal domain (FtsZ-binding). C-terminal domain of ZipA, a component of cell division in E.coli. It interacts with the FtsZ protein in one of the initial steps of septum formation. The structure of this domain is composed of three alpha-helices and a beta-sheet consisting of six antiparallel beta-strands.
Probab=37.27 E-value=34 Score=27.42 Aligned_cols=34 Identities=12% Similarity=0.166 Sum_probs=29.6
Q ss_pred HHhhhhhHHHHHhhhccceeeEEECcCCCCcccc
Q psy17404 233 WEDNLPALLSYIEQVHRGVAGFVKGREGEGVAEA 266 (305)
Q Consensus 233 ~~en~~~l~~~~~~~~~gi~G~v~d~~g~pi~~A 266 (305)
..+++..|+..+++....+.|.|.|.+++|+...
T Consensus 89 ~~~~F~~M~~~A~~lA~~L~g~llDd~r~~lt~~ 122 (131)
T smart00771 89 ALQNFDLMLQTARRLADDLGGVVLDDQRRPLTPQ 122 (131)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEECCCCCcCCHH
Confidence 5678899999999888889999999999998754
No 168
>cd03870 M14_CPA Peptidase M14 Carboxypeptidase (CP) A (CPA) belongs to the A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPA enzymes generally favor hydrophobic residues. A/B subfamily enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The procarboxypeptidase A (PCPA) is produced by the exocrine pancreas and stored as a stable zymogen in the pancreatic granules until secretion into the digestive tract occurs. This subfamily includes CPA1, CPA2 and CPA4 forms. Within these A forms, there are slightly different specificities, with CPA1 preferring aliphatic and small aromatic residues, and CPA2 p
Probab=37.24 E-value=27 Score=32.24 Aligned_cols=62 Identities=18% Similarity=0.284 Sum_probs=46.5
Q ss_pred Hhhhhhhhcc-ccccccceecccccceecCCCCCCCCCCCCCCCCcHHHHHHHHH----HHHhhcCccCCCCCC
Q psy17404 108 EAVEKWLQDI-PFVLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLLAS----SYANAHKKMYKDPGC 176 (305)
Q Consensus 108 ~~~~~~~k~~-~~~~~~~~~g~dlnrnyp~~~~~~~~p~~~~~~pe~~~~~~l~~----~y~~~h~~~~~~~~~ 176 (305)
+++++|.+.. ++...+++|++.+...|||++... ..|+.+.++.++. ++...|+..|..|++
T Consensus 171 ~av~~~~~~~~~~~~~l~lHS~g~~i~yP~~~~~~-------~~~~~~~~~~la~~~~~ai~~~~g~~y~~g~~ 237 (301)
T cd03870 171 KSIVDFVKSHGNFKAFISIHSYSQLLLYPYGYTTQ-------SIPDKTELNQVAKSAVAALKSLYGTSYKYGSI 237 (301)
T ss_pred HHHHHHHhhCCCeEEEEEeccCCceEEecCcCCCC-------CCCCHHHHHHHHHHHHHHHHHhcCCccccccc
Confidence 3788888765 567889999999999999998632 3566666666554 466678888888763
No 169
>cd06907 M14_AGBL2-3_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-2, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This subgroup includes the human AGBL-2, and -3, and the mouse cytosolic carboxypeptidase (CCPs)-2, and -3. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N
Probab=36.78 E-value=96 Score=28.02 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=20.9
Q ss_pred hhccccccccceecccccce-ecCCCC
Q psy17404 114 LQDIPFVLSANLHGGSLVAN-YPYDDN 139 (305)
Q Consensus 114 ~k~~~~~~~~~~~g~dlnrn-yp~~~~ 139 (305)
.+.++..+++++||.+...+ |+|++.
T Consensus 140 ~~~~~i~~ylDlHghs~~~~~F~yG~~ 166 (261)
T cd06907 140 LEEREVILYCDLHGHSRKNNVFMYGCE 166 (261)
T ss_pred HhcCCeEEEEEeccchhccceEeecCC
Confidence 34466778999999998877 899975
No 170
>COG4932 Predicted outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=36.54 E-value=51 Score=36.15 Aligned_cols=43 Identities=19% Similarity=0.245 Sum_probs=34.2
Q ss_pred EC-cCCCCccccEEEEee---e--eEeEeeCCCceEEE-ecCCceEEEEE
Q psy17404 256 KG-REGEGVAEASIAVEG---L--GHVVYSAQDGDYWR-LLAPGNYTLHV 298 (305)
Q Consensus 256 ~d-~~g~pi~~A~i~i~~---~--~~~~~t~~~G~y~~-~l~~G~y~l~v 298 (305)
+| ..+.+++||+-.+.. . +-+.+||++|.-.. .|.||.|.+.=
T Consensus 1163 ~Ds~t~a~LaGA~Fel~d~dG~~VqegLtTD~nG~i~VtdL~PGdYqFVE 1212 (1531)
T COG4932 1163 VDSATKATLAGAEFELQDEDGTLVQEGLTTDENGKINVTDLAPGDYQFVE 1212 (1531)
T ss_pred ecccccccccCcEEEEEcCCCcEeeccceecCCCcEEecccCCcceeeee
Confidence 45 589999999999973 2 35678999999955 59999988653
No 171
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=36.52 E-value=1e+02 Score=24.66 Aligned_cols=52 Identities=19% Similarity=0.319 Sum_probs=32.9
Q ss_pred ceeeEEECcCCCCccccEEEEee--eeEeEee-CCCc------------eE--EEecCC--ceEEEEEEec
Q psy17404 250 GVAGFVKGREGEGVAEASIAVEG--LGHVVYS-AQDG------------DY--WRLLAP--GNYTLHVSAP 301 (305)
Q Consensus 250 gi~G~v~d~~g~pi~~A~i~i~~--~~~~~~t-~~~G------------~y--~~~l~~--G~y~l~vs~~ 301 (305)
-|+|.-.+..|.+|..+.|++.| ++..+.. ...+ .| ...+++ |.|+|.+++.
T Consensus 30 ~i~G~A~~g~g~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~g~~~~aW~~W~~~~~~~~~~G~~~i~~RA~ 100 (131)
T PF03404_consen 30 TIRGYAWSGGGRGIARVEVSTDGGKTWQEATLDGPESPPRYGEARWAWRLWEYDWPPPSLPGEYTIMVRAT 100 (131)
T ss_dssp EEEEEEE-STT--EEEEEEESSTTSSEEE-EEESTSCCCHHTS-TTS-EEEEEEEEECSHCCEEEEEEEEE
T ss_pred EEEEEEEeCCCcceEEEEEEeCCCCCcEEeEeccCCCcccccccCcccceeeeccCcCccccceEEEEEEe
Confidence 38899888888899889999884 3444443 3333 13 234555 9999999874
No 172
>PHA00691 hypothetical protein
Probab=36.45 E-value=42 Score=22.73 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=18.5
Q ss_pred CCCceEEEecCCceEEEEEEec
Q psy17404 280 AQDGDYWRLLAPGNYTLHVSAP 301 (305)
Q Consensus 280 ~~~G~y~~~l~~G~y~l~vs~~ 301 (305)
-++|.||..-..|.|+|-||-.
T Consensus 10 ~ENGr~WVL~K~~~Y~V~vSG~ 31 (68)
T PHA00691 10 YENGRVWVLKKSDSYTVFVSGV 31 (68)
T ss_pred ccCCeEEEEEeCCcEEEEEecc
Confidence 5799998877899999998854
No 173
>cd00231 ZipA ZipA C-terminal domain. ZipA, a membrane-anchored protein, is one of at least nine essential gene products necessary for assembly of the septal ring which mediates cell division in E.coli. ZipA and FtsA directly bind FtsZ, a homolog of eukaryotic tubulins, at the prospective division site, followed by the sequential addition of FtsK, FtsQ, FtsL, FtsW, FtsI, and FtsN. ZipA contains three domains: a short N-terminal membrane-anchored domain, a central P/Q domain that is rich in proline and glutamine and a C-terminal domain, which comprises almost half the protein.
Probab=35.56 E-value=38 Score=27.17 Aligned_cols=34 Identities=12% Similarity=0.169 Sum_probs=29.5
Q ss_pred HHhhhhhHHHHHhhhccceeeEEECcCCCCcccc
Q psy17404 233 WEDNLPALLSYIEQVHRGVAGFVKGREGEGVAEA 266 (305)
Q Consensus 233 ~~en~~~l~~~~~~~~~gi~G~v~d~~g~pi~~A 266 (305)
..+++..|+..+++....+.|.|.|.+.+|+...
T Consensus 88 ~~~~F~~Ml~~A~~lA~~LgG~llDd~r~~lt~~ 121 (130)
T cd00231 88 ALQNFKLMLQAAQRIADDLGGVVLDDQRRMMTPQ 121 (130)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEECCCCCcCCHH
Confidence 4578899999999988889999999999998754
No 174
>cd00596 Peptidase_M14_like The M14 family of metallocarboxypeptidases (MCPs) are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly different specificities, with Carboxypeptidase A1 (CPA1) preferring
Probab=35.37 E-value=67 Score=27.03 Aligned_cols=53 Identities=38% Similarity=0.542 Sum_probs=40.4
Q ss_pred HHhhhhhhhccccccccceecccccceecCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhh
Q psy17404 107 REAVEKWLQDIPFVLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLLASSYANA 166 (305)
Q Consensus 107 ~~~~~~~~k~~~~~~~~~~~g~dlnrnyp~~~~~~~~p~~~~~~pe~~~~~~l~~~y~~~ 166 (305)
.++++.+..+.++.+.+++|+......|||++... ..|+....+.++..+...
T Consensus 84 ~~~~~~~~~~~~~~~~idlH~~~~~~~~p~~~~~~-------~~~~~~~~~~~a~~~~~~ 136 (196)
T cd00596 84 TRALAELIQQRKVDLYIDLHSGSLGVLYPYSHSDT-------PPPDAEIPKALAQLLADA 136 (196)
T ss_pred HHHHHHHHHhCCceEEEEEecCCceEEecCCCCCC-------CCCCHHHHHHHHHHHHHh
Confidence 34577777777888999999999889999987532 126777888888887754
No 175
>cd06248 M14_CPA_CPB_like Peptidase M14 Carboxypeptidase A/B-like subfamily: This is one of two main M14 carboxypeptidase subfamilies, defined by sequence and structural homology, the other being N/E. Carboxypeptidases (CPs) hydrolyze single, C-terminal amino acids from polypeptide chains. They have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Majority of the proteins in this subfamily have not been characterized as yet. The A/B enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; the proenzymes are called procarboxypeptidases. These enzymes exhibit distinct substrate specificity pattern; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. There are nine members in the A/B family: CPA1, CPA2, CPA3, CPA4, CPA5,
Probab=34.90 E-value=30 Score=31.90 Aligned_cols=62 Identities=21% Similarity=0.243 Sum_probs=46.9
Q ss_pred Hhhhhhhhcc----ccccccceecccccceecCCCCCCCCCCCCCCCCcHHHHHHHHHHHH----hhcCccCCCCC
Q psy17404 108 EAVEKWLQDI----PFVLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLLASSYA----NAHKKMYKDPG 175 (305)
Q Consensus 108 ~~~~~~~k~~----~~~~~~~~~g~dlnrnyp~~~~~~~~p~~~~~~pe~~~~~~l~~~y~----~~h~~~~~~~~ 175 (305)
+++++|..+. ++.+.+++|++.....|||++.... .+|+.+.++.|+..++ ..|+..|..|+
T Consensus 172 ~av~~~~~~~~~~~~~~~~l~~Hs~~~~i~~P~~~~~~~------~~~d~~~~~~la~~~a~ai~~~~g~~y~~g~ 241 (304)
T cd06248 172 KALAAFLNKLAEGQGIVGYIDWHSYSQLILYPYGYSCDA------VPPNLENLEELAAGLAKAIRAVSGTTYTVGP 241 (304)
T ss_pred HHHHHHHHhccccCceEEEEEeccCcceEEecCcCCCCC------CCCCHHHHHHHHHHHHHHHHHhcCCCCcccc
Confidence 4788887764 5789999999999999999976321 3567788888877655 45777787775
No 176
>PRK12813 flgD flagellar basal body rod modification protein; Reviewed
Probab=32.78 E-value=77 Score=27.91 Aligned_cols=45 Identities=27% Similarity=0.344 Sum_probs=27.5
Q ss_pred eeeEEECcCCCCccccEEEEe-ee---eEeEeeCCCceEEEecCCceEEEEEEec
Q psy17404 251 VAGFVKGREGEGVAEASIAVE-GL---GHVVYSAQDGDYWRLLAPGNYTLHVSAP 301 (305)
Q Consensus 251 i~G~v~d~~g~pi~~A~i~i~-~~---~~~~~t~~~G~y~~~l~~G~y~l~vs~~ 301 (305)
++=.|+|++|+.|.. +.+. |. .++- .|.+|. .+|+|.|++.|++.
T Consensus 126 v~v~I~D~~G~vV~t--~~~~~G~~~f~WDG-~d~~G~---~l~~G~Yt~~V~A~ 174 (223)
T PRK12813 126 AELVVRDAAGAEVAR--ETVPVGAGPVEWAG-EDADGN---PLPNGAYSFVVESY 174 (223)
T ss_pred EEEEEEcCCCCEEEE--EeeCCCceeEEeCC-cCCCCC---cCCCccEEEEEEEE
Confidence 566788888888753 3332 21 1111 245662 37889999998763
No 177
>TIGR03769 P_ac_wall_RPT actinobacterial surface-anchored protein domain. This model describes a repeat domain that one to three times in Actinobacterial proteins, some of which have LPXTG-type sortase recognition motifs for covalent attachment to the Gram-positive cell wall. Where it occurs with duplication in an LPXTG-anchored protein, it tends to be adjacent to the substrate-binding protein of the gene trio of an ABC transporter system, where that substrate-binding protein has a single copy of this same domain. This arrangement suggests a substrate-binding relay system, with the LPXTG protein acting as a substrate receptor.
Probab=30.64 E-value=38 Score=21.31 Aligned_cols=14 Identities=50% Similarity=0.800 Sum_probs=11.5
Q ss_pred cCCceEEEEEEecC
Q psy17404 289 LAPGNYTLHVSAPG 302 (305)
Q Consensus 289 l~~G~y~l~vs~~G 302 (305)
-.||.|+|.+++.+
T Consensus 10 T~PG~Y~l~~~a~~ 23 (41)
T TIGR03769 10 TKPGTYTLTVQATA 23 (41)
T ss_pred CCCeEEEEEEEEEE
Confidence 47999999998754
No 178
>cd03862 Peptidase_M14-like_7 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=30.51 E-value=89 Score=28.39 Aligned_cols=65 Identities=18% Similarity=0.343 Sum_probs=40.3
Q ss_pred HHHHHhhhhhhhc----cccccccceecc---cccceecCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhc-CccCCCCC
Q psy17404 104 ERAREAVEKWLQD----IPFVLSANLHGG---SLVANYPYDDNQAMKPQVDSPTPDDSIFKLLASSYANAH-KKMYKDPG 175 (305)
Q Consensus 104 ~~~~~~~~~~~k~----~~~~~~~~~~g~---dlnrnyp~~~~~~~~p~~~~~~pe~~~~~~l~~~y~~~h-~~~~~~~~ 175 (305)
+...+++++|.++ .++.+.+++|++ .....|||++... ..|+...+..++..+...+ ...|..++
T Consensus 131 EpEt~al~~~~~~~~~~~~~~~~ld~HSg~G~~~~i~~Pyg~~~~-------~~~~~~~~~~l~~~~~~~~~~~~Y~~g~ 203 (273)
T cd03862 131 ELEAQALCRFVRELLFESPFSIALDCHSGFGLVDRIWFPYAYTKE-------PIPHLAEIYALKELLERTYPNHVYRFEP 203 (273)
T ss_pred CHHHHHHHHHHHHhcccCCeEEEEEECCCCCccCEEEcCCcCCCC-------CCCCHHHHHHHHHHHHHhCCCCceEECC
Confidence 3334577778765 356789999995 3557799986531 2345556666666665544 23566554
No 179
>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes. The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.
Probab=28.66 E-value=91 Score=23.70 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=24.1
Q ss_pred cCCCCccccEEEEeeee-----EeEeeCCCc-eEEEe---cCCceEEEEEEec
Q psy17404 258 REGEGVAEASIAVEGLG-----HVVYSAQDG-DYWRL---LAPGNYTLHVSAP 301 (305)
Q Consensus 258 ~~g~pi~~A~i~i~~~~-----~~~~t~~~G-~y~~~---l~~G~y~l~vs~~ 301 (305)
....++..++|+|+..+ ....++..+ .+.+. ++.|.|+|.++..
T Consensus 42 ~F~~~~~~vtI~I~d~~G~vVy~~~~~~~~~~~~~I~L~~~~~G~Y~l~i~~~ 94 (106)
T PF11589_consen 42 EFESPIGDVTITIKDSTGNVVYSETVSNSAGQSITIDLNGLPSGEYTLEITNG 94 (106)
T ss_dssp EESS--SEEEEEEEETT--EEEEEEESCGGTTEEEEE-TTS-SEEEEEEEEEC
T ss_pred EEcCCCCCEEEEEEeCCCCEEEEEEccCCCCcEEEEEeCCCCCccEEEEEEeC
Confidence 34567777788887521 122233333 34333 6789999998765
No 180
>cd06236 M14_AGBL5_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-5, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human AGBL5 and the mouse cytosolic carboxypeptidase (CCP)-5. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal
Probab=28.46 E-value=1.7e+02 Score=27.06 Aligned_cols=24 Identities=13% Similarity=0.308 Sum_probs=20.0
Q ss_pred ccccccccceecccccce-ecCCCC
Q psy17404 116 DIPFVLSANLHGGSLVAN-YPYDDN 139 (305)
Q Consensus 116 ~~~~~~~~~~~g~dlnrn-yp~~~~ 139 (305)
.+++.+++++||.....| |.|++.
T Consensus 164 ~~~i~~yiDlH~hs~~~~~F~Yg~~ 188 (304)
T cd06236 164 ESRLAFYIDLHAHASKRGCFIYGNA 188 (304)
T ss_pred cCCceEEEEecccccccceEeeecC
Confidence 456788999999998887 899864
No 181
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=28.41 E-value=79 Score=22.82 Aligned_cols=34 Identities=24% Similarity=0.329 Sum_probs=22.6
Q ss_pred cccEEEEeeeeEeEeeCCCceE-EEecCCce---EEEEE
Q psy17404 264 AEASIAVEGLGHVVYSAQDGDY-WRLLAPGN---YTLHV 298 (305)
Q Consensus 264 ~~A~i~i~~~~~~~~t~~~G~y-~~~l~~G~---y~l~v 298 (305)
++|.|++.|... ..+.....| ...|++|. |+|++
T Consensus 11 adAkl~v~G~~t-~~~G~~R~F~T~~L~~G~~y~Y~v~a 48 (75)
T TIGR03000 11 ADAKLKVDGKET-NGTGTVRTFTTPPLEAGKEYEYTVTA 48 (75)
T ss_pred CCCEEEECCeEc-ccCccEEEEECCCCCCCCEEEEEEEE
Confidence 678999987432 234666677 45699987 55554
No 182
>PF10994 DUF2817: Protein of unknown function (DUF2817); InterPro: IPR021259 This family of proteins has no known function.
Probab=27.65 E-value=58 Score=30.62 Aligned_cols=43 Identities=28% Similarity=0.298 Sum_probs=28.3
Q ss_pred eeeeccCccchhhhhh---cceeEEEEEecCCCCCCCCCchhHHHhhh
Q psy17404 193 QWYVVSGGMQDYNYIH---ANTLEITLELGCYKFPPAKDLPSYWEDNL 237 (305)
Q Consensus 193 ~~Y~~~G~~~Dw~y~~---~~~~~~tiEl~~~~~pp~~~i~~~~~en~ 237 (305)
.-|+..|.+.+|.+.. .....+++|.+. +|+...+..+-.|||
T Consensus 258 ~s~~~~G~~~~~~~~~~~~~~~~~~~~EfGT--~~~~~v~~alr~enw 303 (341)
T PF10994_consen 258 VSYDITGLLIDAWAELLPDAEYTPITLEFGT--YPGLEVLRALRAENW 303 (341)
T ss_pred cccccCCcHHHHHHHHcCCCceeEEEEEeCC--CCHHHHHHHHHHHHH
Confidence 4588999999999864 246789999975 344444444444443
No 183
>PRK10301 hypothetical protein; Provisional
Probab=27.59 E-value=75 Score=25.15 Aligned_cols=14 Identities=36% Similarity=0.636 Sum_probs=10.7
Q ss_pred cCCceEEEEEEecC
Q psy17404 289 LAPGNYTLHVSAPG 302 (305)
Q Consensus 289 l~~G~y~l~vs~~G 302 (305)
|++|+|+|.-+..+
T Consensus 96 L~~G~YtV~Wrvvs 109 (124)
T PRK10301 96 LKPGTYTVDWHVVS 109 (124)
T ss_pred CCCccEEEEEEEEe
Confidence 67899999876554
No 184
>KOG2649|consensus
Probab=27.36 E-value=24 Score=34.56 Aligned_cols=43 Identities=14% Similarity=0.074 Sum_probs=27.2
Q ss_pred cccceecccccceecCCCCCC------CCC---------CCCCCCCcHHHHHHHHHHH
Q psy17404 121 LSANLHGGSLVANYPYDDNQA------MKP---------QVDSPTPDDSIFKLLASSY 163 (305)
Q Consensus 121 ~~~~~~g~dlnrnyp~~~~~~------~~p---------~~~~~~pe~~~~~~l~~~y 163 (305)
-+.|.+|+|||||||=....- +.| +...-+||+.+......++
T Consensus 190 GR~Nang~DLNrnFPd~~~~~~~~~~~~~~n~~l~~~~~~~~~~~pEt~Avm~W~~~~ 247 (500)
T KOG2649|consen 190 GRNNANGVDLNRNFPDQFRLVYFIVTFDLLNSHLIMFNDDLNLRQPETIAVMKWLRDI 247 (500)
T ss_pred cccCccccchhccCcccccceeeeeeecccccccccccccccccCccHHHHHHHHhhc
Confidence 357899999999999664321 001 1114678887776655554
No 185
>PRK12812 flgD flagellar basal body rod modification protein; Reviewed
Probab=27.29 E-value=75 Score=28.70 Aligned_cols=45 Identities=20% Similarity=0.145 Sum_probs=27.7
Q ss_pred eeeEEECcCCCCccccEEEEe----eee---EeEeeCCCceEEEecCCceEEEEEEec
Q psy17404 251 VAGFVKGREGEGVAEASIAVE----GLG---HVVYSAQDGDYWRLLAPGNYTLHVSAP 301 (305)
Q Consensus 251 i~G~v~d~~g~pi~~A~i~i~----~~~---~~~~t~~~G~y~~~l~~G~y~l~vs~~ 301 (305)
++=.|+|++|+.|. ++.+. |.. ++- .|.+|. .+|+|.|++.|++.
T Consensus 143 v~v~I~D~~G~~V~--t~~lg~~~aG~~~f~WDG-~d~~G~---~~~~G~Yt~~v~A~ 194 (259)
T PRK12812 143 GTLEIYDSNNKLVE--KIDFKEISQGLFTMEWDG-RDNDGV---YAGDGEYTIKAVYN 194 (259)
T ss_pred EEEEEEeCCCCEEE--EEecCCCCCcceeEEECC-CCCCCC---cCCCeeeEEEEEEE
Confidence 66778898888885 33332 211 111 255562 37889999998753
No 186
>cd06229 M14_Endopeptidase_I Peptidase M14-like domain of Gamma-D-glutamyl-L-diamino acid endopeptidase 1 (also known as Gamma-D-glutamyl-meso-diaminopimelate peptidase I, and Endopeptidase I (ENP1); EC 3.4.19.11). ENP1 is a member of the M14 family of metallocarboxypeptidases (MCPs). However it has an exceptional type of activity of hydrolyzing the gamma-D-Glu-(L)meso-diaminopimelic acid (gamma-D-Glu-Dap) bond of L-Ala-gamma-D-Glu-(L)meso-diaminopimelic acid and L-Ala-gamma-D-Glu-(L)meso-diaminopimelic acid(L)-D-Ala peptides. ENP1has a different substrate specificity and cellular role than MpaA (MpaA does not belong to this group). ENP1 hydrolyzes the gamma-D-Glu-Dap bond of MurNAc-tripeptide and MurNAc-tetrapeptide, as well as the amide bond of free tripeptide and tetrapeptide . ENP1 is active on spore cortex peptidoglycan, and is produced at stage IV of sporulation in forespore and spore integuments.
Probab=27.01 E-value=92 Score=27.79 Aligned_cols=50 Identities=14% Similarity=0.108 Sum_probs=37.3
Q ss_pred HHhhhhhhhccccccccceecccccceecCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhcC
Q psy17404 107 REAVEKWLQDIPFVLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLLASSYANAHK 168 (305)
Q Consensus 107 ~~~~~~~~k~~~~~~~~~~~g~dlnrnyp~~~~~~~~p~~~~~~pe~~~~~~l~~~y~~~h~ 168 (305)
.+++++|....++...+++|+......|||... +| ...+.+++++...++
T Consensus 151 tral~~~~~~~~~~~~i~~Hs~g~~i~~~~~~~----------~~--~~~~~~~~~~~~~~g 200 (255)
T cd06229 151 TIALAELTRENRFRAVLAYHSQGEEIYWGYGGL----------EP--PESQKMAELLAEVSG 200 (255)
T ss_pred HHHHHHHHHhCCCeEEEEecCCCCeEEecCCCC----------Cc--hHHHHHHHHHhhccC
Confidence 347888888888889999999999999998631 22 445667777776654
No 187
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=26.98 E-value=2.1e+02 Score=26.85 Aligned_cols=31 Identities=19% Similarity=0.335 Sum_probs=22.5
Q ss_pred eeeEeEeeCCCceEEEe----cC--CceEEEEEEecC
Q psy17404 272 GLGHVVYSAQDGDYWRL----LA--PGNYTLHVSAPG 302 (305)
Q Consensus 272 ~~~~~~~t~~~G~y~~~----l~--~G~y~l~vs~~G 302 (305)
+.+..+.||.+|+|.+. .+ +|.++|.+...|
T Consensus 108 ~~tv~~~Td~~Gyf~i~~~~~~~~~~g~~av~lq~eg 144 (373)
T COG4850 108 GATVNVATDDEGYFIIHAVIPFPPTKGNHAVRLQSEG 144 (373)
T ss_pred CceEEeEecCCCceEEEEecccCCCCCceeEEeecCC
Confidence 44555689999988542 33 477899998887
No 188
>PF04354 ZipA_C: ZipA, C-terminal FtsZ-binding domain; InterPro: IPR007449 This entry represents the ZipA C-terminal domain. ZipA is an essential cell division protein involved in septum formation [, ]. Its C-terminal domain binds FtsZ, a major component of the bacterial septal ring []. The structure of this domain is an alpha-beta fold with three alpha helices and a beta sheet of six antiparallel beta strands. The major loops protruding from the beta sheet surface are thought to form a binding site for FtsZ [].; GO: 0000917 barrier septum formation, 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane; PDB: 1Y2G_B 1S1S_A 1F46_A 1S1J_A 1F47_B 1F7W_A 1Y2F_A 1F7X_A.
Probab=26.79 E-value=48 Score=26.55 Aligned_cols=34 Identities=12% Similarity=0.116 Sum_probs=26.9
Q ss_pred HHhhhhhHHHHHhhhccceeeEEECcCCCCcccc
Q psy17404 233 WEDNLPALLSYIEQVHRGVAGFVKGREGEGVAEA 266 (305)
Q Consensus 233 ~~en~~~l~~~~~~~~~gi~G~v~d~~g~pi~~A 266 (305)
..+++..|+..+++....+.|.|.|.+.+|+...
T Consensus 89 ~~~~Fd~M~~~A~~lA~~L~g~llD~~r~~lt~~ 122 (131)
T PF04354_consen 89 GLAAFDQMLETARQLAQELGGELLDDNRSPLTEQ 122 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-EEEETTSSB--HH
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEECCCCCcCCHH
Confidence 5678899999999888889999999999998754
No 189
>PRK09619 flgD flagellar basal body rod modification protein; Reviewed
Probab=26.74 E-value=96 Score=27.18 Aligned_cols=45 Identities=18% Similarity=0.156 Sum_probs=25.5
Q ss_pred eeeEEECcCCCCccccEEEEeeee---EeEeeCCCceEEEecCCceEEEEEEec
Q psy17404 251 VAGFVKGREGEGVAEASIAVEGLG---HVVYSAQDGDYWRLLAPGNYTLHVSAP 301 (305)
Q Consensus 251 i~G~v~d~~g~pi~~A~i~i~~~~---~~~~t~~~G~y~~~l~~G~y~l~vs~~ 301 (305)
++=+|+|++|+. .++.+.... +.+.=|..+ ..+|+|.|++.|+..
T Consensus 125 v~v~I~D~~G~v---~t~~l~~~~aG~~~f~WDG~~---~~lp~G~Y~~~V~a~ 172 (218)
T PRK09619 125 LTLHITDILGQE---KKIDLGKQPAGPVNFTLDPAA---LGLQPGQYQLSVVSG 172 (218)
T ss_pred EEEEEEeCCCCE---EEEecCCcCCCceeEEECCCC---CCCCCceeEEEEEEe
Confidence 666788888883 334442111 111113222 238999999999753
No 190
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=25.71 E-value=1.9e+02 Score=25.92 Aligned_cols=44 Identities=18% Similarity=0.130 Sum_probs=27.3
Q ss_pred ccchhhhhhcceeEEEEEecCCCCCCCCCchhHHHhhhhhHHHHHhhh
Q psy17404 200 GMQDYNYIHANTLEITLELGCYKFPPAKDLPSYWEDNLPALLSYIEQV 247 (305)
Q Consensus 200 ~~~Dw~y~~~~~~~~tiEl~~~~~pp~~~i~~~~~en~~~l~~~~~~~ 247 (305)
++.+......+++++|+|+|..+-... ...+....+++.++.+.
T Consensus 152 ~~~~~~~~~~g~~a~tvE~G~~~~~~~----~~~~~~~~~i~~~L~~~ 195 (292)
T PF04952_consen 152 GTLRSAANRAGIPAVTVELGGGGDFDE----EAVEQAVDGILNVLRHL 195 (292)
T ss_dssp SHHHHHHHHCSSEEEEEEEEETTTTTH----HHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHhcCCeEEEEEeCCCCCCCH----HHHHHHHHHHHHHHHHh
Confidence 445555556789999999998632222 23344566666666654
No 191
>PF15162 DUF4580: Domain of unknown function (DUF4580)
Probab=25.71 E-value=74 Score=26.34 Aligned_cols=43 Identities=23% Similarity=0.385 Sum_probs=26.2
Q ss_pred CCCeEEEEecccC-CchhHHHHHHHHHHHHHHHcCCChHHHHhhccceEEEEeccCchhHHH
Q psy17404 45 GVPEFKYVANMHG-NEVVGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYER 105 (305)
Q Consensus 45 ~kp~v~i~~~~Hg-~E~~~~~~~l~~~~~L~~~y~~d~~~~~ll~~~~~~iiP~~NPDG~~~ 105 (305)
..+-+++.+.+|| .||- ++.. ++++|. ..+.|+|+.||--...
T Consensus 74 rNsflvL~aalhg~~ew~-------~m~~----------iqRFLG-~nl~ilpvhn~~~~v~ 117 (162)
T PF15162_consen 74 RNSFLVLSAALHGPEEWK-------LMFR----------IQRFLG-SNLRILPVHNPANCVK 117 (162)
T ss_pred CCceEEeehhhcCHHHHH-------HHHH----------HHHHhc-CCceEEecCCHHHHHH
Confidence 3566777788887 4441 1211 134454 5678999999965444
No 192
>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases.; PDB: 3D6K_C 3EZ1_A 3PPL_B.
Probab=24.81 E-value=51 Score=31.64 Aligned_cols=39 Identities=26% Similarity=0.403 Sum_probs=20.9
Q ss_pred HHHHHHHHHHcCCChHHHHhhccceEEEEecc-CchhHHHHHHhhhhhh
Q psy17404 67 LLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSM-NPDGYERAREAVEKWL 114 (305)
Q Consensus 67 l~~~~~L~~~y~~d~~~~~ll~~~~~~iiP~~-NPDG~~~~~~~~~~~~ 114 (305)
+..++.|+.+ |+.+ --+|.||.+ ||+|..|+.+.++..-
T Consensus 160 mD~Ve~LV~~---D~sv------KGiWcVP~ySNPtG~tySde~vrrlA 199 (425)
T PF12897_consen 160 MDMVEELVAE---DPSV------KGIWCVPKYSNPTGITYSDEVVRRLA 199 (425)
T ss_dssp HHHHHHHTHT---STTE------EEEEE-SSS-TTT-----HHHHHHHH
T ss_pred HHHHHHHHhc---CCcc------ceEEeCCCccCCCCccCCHHHHHHHh
Confidence 4555555542 4432 568999987 7999999988666553
No 193
>PRK05842 flgD flagellar basal body rod modification protein; Reviewed
Probab=24.74 E-value=1.1e+02 Score=28.15 Aligned_cols=47 Identities=17% Similarity=0.142 Sum_probs=27.8
Q ss_pred ceeeEEECcCCCCccccEEEEe----eeeEeEe---eCCCceEEEecCCceEEEEEEe
Q psy17404 250 GVAGFVKGREGEGVAEASIAVE----GLGHVVY---SAQDGDYWRLLAPGNYTLHVSA 300 (305)
Q Consensus 250 gi~G~v~d~~g~pi~~A~i~i~----~~~~~~~---t~~~G~y~~~l~~G~y~l~vs~ 300 (305)
.++=.|+|++|+.|....+... |. +.+. .|.+|. .+|+|.|++.|++
T Consensus 167 ~v~I~I~Da~G~vVrTi~l~~~~~~aG~-~~f~WDG~d~~G~---~~p~G~Yt~~V~a 220 (295)
T PRK05842 167 VPAIQILNENNELVKTIPLKDYNGQKGY-INFEWDGLNEKGE---KVPKGNYKIKAEY 220 (295)
T ss_pred eEEEEEEcCCCCEEEEEecCcccCCCcc-eeEEECCCCCCCC---cCCCcceEEEEEE
Confidence 3666788888888753322111 11 1111 356662 3788999998875
No 194
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=24.47 E-value=69 Score=27.13 Aligned_cols=31 Identities=26% Similarity=0.434 Sum_probs=25.5
Q ss_pred CCCeEEEEecccCCchhHHHHHHHHHHHHHH
Q psy17404 45 GVPEFKYVANMHGNEVVGRELLLLLAQYLCQ 75 (305)
Q Consensus 45 ~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~ 75 (305)
..+.|++.+.+||-|=.|....+.|+..|-+
T Consensus 113 ~~~~vv~stTi~GYEGtGRgF~lkf~~~L~~ 143 (177)
T PF05127_consen 113 RFPRVVFSTTIHGYEGTGRGFSLKFLKQLKK 143 (177)
T ss_dssp CSSEEEEEEEBSSTTBB-HHHHHHHHCT---
T ss_pred hCCEEEEEeeccccccCCceeeeehhhhccc
Confidence 6789999999999999999999999998854
No 195
>PF02246 B1: Protein L b1 domain; InterPro: IPR003147 Protein L is a bacterial protein with immunoglobulin (Ig) light chain-binding properties. It contains a number of homologous b1 repeats towards the N terminus. These repeats have been found to be responsible for the interaction of protein L with Ig light chains [].; PDB: 1KH0_A 1K52_A 1JML_A 2PTL_A 1K50_B 1HZ6_C 1HZ5_B 1K53_B 2KAC_A 2JZP_A ....
Probab=23.16 E-value=41 Score=22.98 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=21.1
Q ss_pred eeCCCceEEEecCCceEEEEEEecC
Q psy17404 278 YSAQDGDYWRLLAPGNYTLHVSAPG 302 (305)
Q Consensus 278 ~t~~~G~y~~~l~~G~y~l~vs~~G 302 (305)
...++|.|...|..|-|+|.+.+.|
T Consensus 44 l~k~ng~yt~d~~d~gytlnikfag 68 (69)
T PF02246_consen 44 LKKENGEYTVDVADKGYTLNIKFAG 68 (69)
T ss_dssp HHHHHBEEEEEEECCCTEEEEEEEE
T ss_pred HHhhCCceEEEeccCceEEEEEecC
Confidence 3467899999999999999998876
No 196
>PF01868 UPF0086: Domain of unknown function UPF0086; InterPro: IPR002730 The p29 subunit (also known as Rpp29 or Pop4) of the related ribonucleoproteins ribonuclease (RNase) P and RNase MRP can be found in both eukaryotes and arachea []. The structure of the RNase P subunit, Rpp29, from Methanobacterium thermoautotrophicum has been determined. Mth Rpp29 is a member of the oligonucleotide/oligosaccharide binding fold family. It contains a structured beta-barrel core and unstructured N- and C-terminal extensions bearing several highly conserved amino acid residues that could be involved in RNA contacts in the protein-RNA complex []. Rpp29 (3.1.26.5 from EC) catalyses the endonucleolytic cleavage of RNA, removing 5'-extranucleotides from tRNA precursor. It interacts with the Rpp25 and Pop5 subunits. RNase P is a ubiquitous ribonucleoprotein enzyme primarily responsible for cleaving the 5' leader sequence during maturation of tRNAs in all three domains of life. In eubacteria, this enzyme is made up of two subunits: a large RNA (approximately 120 kDa) responsible for mediating catalysis, and a small protein cofactor (approximately 15 kDa) that modulates substrate recognition and is required for efficient in vivo catalysis. In contrast, multiple proteins are associated with eukaryotic and archaeal RNase P, and these proteins exhibit no recognizable homology to the conserved bacterial protein subunit. In reconstitution experiments with recombinantly expressed and purified protein subunits Mth Rpp29, a homologue of the Rpp29 protein subunit from eukaryotic RNase P, is an essential protein component of the archaeal holoenzyme []. In Saccharomyces cerevisiae (Baker's yeast), RNase P consists of 9 protein subunits (Pop1, Pop3-8, Rpr2 and Rpp1), while in humans there are 10 subunits (Rpp14, 20, 21, 25, 29, 30, 38, 40, hPop1, 5). RNase MRP (mitochondrial RNA processing) is an rRNA processing enzyme that cleaves a specific site within precursor rRNA to generate the mature 5'-end of 5.8S rRNA []. RNase MRP also cleaves primers for mitochondrial DNA replication and CLB2 mRNA. In yeast, RNase MRP possesses one putatively catalytic RNA and at least 9 protein subunits and is highly related to RNase P (Pop1, Pop3-Pop8, Rpp1, Snm1 and Rmp1).; GO: 0003723 RNA binding, 0004540 ribonuclease activity, 0006364 rRNA processing, 0006379 mRNA cleavage, 0008033 tRNA processing, 0000172 ribonuclease MRP complex, 0030677 ribonuclease P complex; PDB: 1V76_B 2ZAE_C 1OQK_A 2KI7_A 1TSF_A 1TS9_A 1PC0_A.
Probab=22.89 E-value=2.5e+02 Score=20.76 Aligned_cols=46 Identities=17% Similarity=0.137 Sum_probs=27.4
Q ss_pred cceeeEEECcCCCCccccEEEEeeeeEeEeeCCCceEEEecCCce-EEEE
Q psy17404 249 RGVAGFVKGREGEGVAEASIAVEGLGHVVYSAQDGDYWRLLAPGN-YTLH 297 (305)
Q Consensus 249 ~gi~G~v~d~~g~pi~~A~i~i~~~~~~~~t~~~G~y~~~l~~G~-y~l~ 297 (305)
.|++|.|.+++-..+. |.-.+......-..+..|.+.++.+. ++|.
T Consensus 28 vG~~GiVV~ETknt~~---I~t~~~~~~~IpK~~~vF~~~~~~~~~~~i~ 74 (89)
T PF01868_consen 28 VGIEGIVVDETKNTFV---IVTEDGKVKTIPKAGSVFEFELPGGSKVTIY 74 (89)
T ss_dssp TTEEEEEEEEETTEEE---EEETTEEEEEEESTTEEEEEEETTTEEEEEE
T ss_pred cCCEEEEEEcccceEE---EEecCCcEEEEecCCEEEEEEeCCCcEEEEE
Confidence 3789999887665543 21112123334467777777787777 6553
No 197
>PRK06764 hypothetical protein; Provisional
Probab=22.71 E-value=59 Score=24.02 Aligned_cols=54 Identities=20% Similarity=0.183 Sum_probs=33.0
Q ss_pred cceeEEEEEecCCCC--C--CCCCchhHHHhhhhhHHHHHhhhcc-ceeeEEEC-cCCCC
Q psy17404 209 ANTLEITLELGCYKF--P--PAKDLPSYWEDNLPALLSYIEQVHR-GVAGFVKG-REGEG 262 (305)
Q Consensus 209 ~~~~~~tiEl~~~~~--p--p~~~i~~~~~en~~~l~~~~~~~~~-gi~G~v~d-~~g~p 262 (305)
++.++=||-|+.--| | +..+.+.+-+||+.++-..|.+.-. -++|+-.| -+|..
T Consensus 9 gvalag~iglsgllflepsvs~ae~~q~~~enfn~i~v~mn~~e~y~lsgrsidilsgdk 68 (105)
T PRK06764 9 GVALAGTIGLSGLLFLEPSVSAAESQQVKEENFNAIDVSMNINELYVLSGRSIDVLSGDK 68 (105)
T ss_pred ceeeeeecccceEEEeccccchhcchhhhhcccceEEEEEeccceEEEcCceeeeecCCh
Confidence 344444555554434 3 3567888889999887666654322 37787777 55554
No 198
>COG1588 POP4 RNase P/RNase MRP subunit p29 [Translation, ribosomal structure and biogenesis]
Probab=22.39 E-value=2.4e+02 Score=21.29 Aligned_cols=42 Identities=14% Similarity=0.070 Sum_probs=22.8
Q ss_pred cceeeEEECcCCCCccccEEEEeeeeEeEeeCCCceEEEecCCceE
Q psy17404 249 RGVAGFVKGREGEGVAEASIAVEGLGHVVYSAQDGDYWRLLAPGNY 294 (305)
Q Consensus 249 ~gi~G~v~d~~g~pi~~A~i~i~~~~~~~~t~~~G~y~~~l~~G~y 294 (305)
.|++|+|.|++-+.+- ..++....+.-...-.|...++.|.+
T Consensus 31 vGI~G~VVdETkNtLv----i~t~~~~~~VpK~~~vfef~~~~G~~ 72 (95)
T COG1588 31 VGIEGRVVDETKNTLV----IDTGSREKVVPKDGAVFEFEGPDGEK 72 (95)
T ss_pred cceeEEEEeeeccEEE----EECCCceEEEecCcEEEEEEcCCCcE
Confidence 4899999996655432 22222233333444455555666665
No 199
>PF04219 DUF413: Protein of unknown function, DUF; InterPro: IPR007335 This is a family of uncharacterised proteins.
Probab=21.67 E-value=73 Score=24.01 Aligned_cols=32 Identities=6% Similarity=0.105 Sum_probs=22.3
Q ss_pred cceecCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhh
Q psy17404 131 VANYPYDDNQAMKPQVDSPTPDDSIFKLLASSYANA 166 (305)
Q Consensus 131 nrnyp~~~~~~~~p~~~~~~pe~~~~~~l~~~y~~~ 166 (305)
+.|||+++..+|+ ++-.|.++++....+|..+
T Consensus 5 ~~~fPrGF~RsGd----FTi~Ea~lLe~~G~~~~~L 36 (93)
T PF04219_consen 5 DKNFPRGFSRSGD----FTIKEAQLLEQYGHAMKAL 36 (93)
T ss_pred CCCCCCccccCCc----ccHHHHHHHHHHHHHHHHH
Confidence 6799999988764 3455666677666666554
No 200
>PLN02757 sirohydrochlorine ferrochelatase
Probab=20.72 E-value=4.6e+02 Score=21.44 Aligned_cols=60 Identities=10% Similarity=0.058 Sum_probs=35.6
Q ss_pred CCCeEEEEecccCCchhHHHHHHHHHHHHHHHcC-----------CChHHHHhhc------cceEEEEeccCchhHHH
Q psy17404 45 GVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYK-----------IDDRVTRMLQ------TTRIHLMPSMNPDGYER 105 (305)
Q Consensus 45 ~kp~v~i~~~~Hg~E~~~~~~~l~~~~~L~~~y~-----------~d~~~~~ll~------~~~~~iiP~~NPDG~~~ 105 (305)
.+..++++| +=.+..-+-+.+..+++.|-+... ..|.+.+.++ -.++.|+|.+==.|...
T Consensus 12 ~~~~lllvg-HGSrd~~a~~~~~~la~~l~~~~~~~~V~~aFle~~~Psl~eal~~l~~~g~~~vvVvP~FL~~G~H~ 88 (154)
T PLN02757 12 DKDGVVIVD-HGSRRKESNLMLEEFVAMYKQKTGHPIVEPAHMELAEPSIKDAFGRCVEQGASRVIVSPFFLSPGRHW 88 (154)
T ss_pred CCcEEEEEe-CCCCCHHHHHHHHHHHHHHHhhCCCCcEEEEEEecCCCCHHHHHHHHHHCCCCEEEEEEhhhcCCcch
Confidence 355555554 444777788888888888865321 1343443332 24677777776666654
No 201
>PF10648 Gmad2: Immunoglobulin-like domain of bacterial spore germination; InterPro: IPR018911 This domain is found linked to IPR019606 from INTERPRO in some bacterial proteins. It is predicted to contain an immunoglobulin-like all-beta fold.
Probab=20.32 E-value=2.5e+02 Score=20.70 Aligned_cols=45 Identities=29% Similarity=0.294 Sum_probs=27.1
Q ss_pred eeeEEECcCCCCccccEEEEeeeeEeEeeCCCceEE--EecC---CceEEEEEEe
Q psy17404 251 VAGFVKGREGEGVAEASIAVEGLGHVVYSAQDGDYW--RLLA---PGNYTLHVSA 300 (305)
Q Consensus 251 i~G~v~d~~g~pi~~A~i~i~~~~~~~~t~~~G~y~--~~l~---~G~y~l~vs~ 300 (305)
+.=+|.|.+|+.+..-.+...+ -...-|.|. +.++ |+.|+|.+-.
T Consensus 31 v~~rv~D~~g~vl~e~~~~a~~-----g~~~~g~F~~tv~~~~~~~~~g~l~v~~ 80 (88)
T PF10648_consen 31 VNIRVRDGHGEVLAEGFVTATG-----GAPSWGPFEGTVSFPPPPPGKGTLEVFE 80 (88)
T ss_pred EEEEEEcCCCcEEEEeeEEecc-----CCCcccceEEEEEeCCCCCCceEEEEEE
Confidence 6667888888776433333311 135567773 3344 8999998853
No 202
>PRK12634 flgD flagellar basal body rod modification protein; Reviewed
Probab=20.24 E-value=1.4e+02 Score=26.26 Aligned_cols=46 Identities=20% Similarity=0.280 Sum_probs=26.1
Q ss_pred eeeEEECcCCCCccccEEEEe--ee---eEeEeeCCCceEEEecCCceEEEEEEe
Q psy17404 251 VAGFVKGREGEGVAEASIAVE--GL---GHVVYSAQDGDYWRLLAPGNYTLHVSA 300 (305)
Q Consensus 251 i~G~v~d~~g~pi~~A~i~i~--~~---~~~~~t~~~G~y~~~l~~G~y~l~vs~ 300 (305)
+.=.|+|++|+.|....+.-. |. .++- .|.+|. .+|+|.|++.|.+
T Consensus 124 v~i~I~d~~G~~V~t~~lg~~~aG~~~f~WDG-~d~~G~---~~~~G~Yt~~v~a 174 (221)
T PRK12634 124 VNFEITDANGAFVKQISVPASAAGEVSFAWDG-TDANGN---RMAAGKYGVTATQ 174 (221)
T ss_pred EEEEEEcCCCCEEEEEecCCcCCCceeEEECC-CCCCCC---cCCCeeeEEEEEE
Confidence 566788888887753322111 21 1111 245562 3778999998875
No 203
>PF09087 Cyc-maltodext_N: Cyclomaltodextrinase, N-terminal; InterPro: IPR015171 This domain is found at the N terminus of cyclomaltodextrinase. The domain assumes a beta-sandwich structure composed of the eight antiparallel beta-strands. A ten residue linker is also present at the C-terminal end, which connects the N-terminal domain to a distal domain in the protein. This domain participates in oligomerisation of the protein, wherein the N-terminal domain of one subunit contacts the active centre of the other subunit, and is also required for binding of cyclodextrin to substrate []. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=20.02 E-value=3.8e+02 Score=19.93 Aligned_cols=43 Identities=21% Similarity=0.495 Sum_probs=27.3
Q ss_pred CCCCccccEEEEe--eeeE-eEeeCCCceE-EEe-----cCCceEEEEEEec
Q psy17404 259 EGEGVAEASIAVE--GLGH-VVYSAQDGDY-WRL-----LAPGNYTLHVSAP 301 (305)
Q Consensus 259 ~g~pi~~A~i~i~--~~~~-~~~t~~~G~y-~~~-----l~~G~y~l~vs~~ 301 (305)
.|+-|+.+.|++. |... .+..-++..| ++. ..||+++|.++..
T Consensus 21 yG~nI~~~~v~i~~~gV~i~~v~~~~npNYLFv~L~i~~akpg~~~i~~~~~ 72 (88)
T PF09087_consen 21 YGKNIASAEVSISYPGVTIKKVVKTDNPNYLFVYLDISDAKPGTFTINFKKG 72 (88)
T ss_dssp ESTTGGGSEEEE-BTTEEEEEEEE-SSTTEEEEEEEE-T--SEEEEEEEEET
T ss_pred ecCCcccCEEEEeCCCeEEEEEEecCCCCEEEEEEecCCCCCcEEEEEEEcC
Confidence 3678888999997 4433 3444667777 442 4689999998876
Done!