RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17404
(305 letters)
>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent
protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta
specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A*
Length = 380
Score = 375 bits (964), Expect = e-130
Identities = 172/341 (50%), Positives = 226/341 (66%), Gaps = 40/341 (11%)
Query: 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEV 60
M+ L YP++TRLYSVG+SVE REL+V+E+S +PG+H+ G PEFKY+ NMHGNEV
Sbjct: 16 MEIFLRRYANEYPSITRLYSVGKSVELRELYVMEISDNPGIHEAGEPEFKYIGNMHGNEV 75
Query: 61 VGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYERARE------------ 108
VGRELLL L +YLC+N+ D VT ++Q+TRIH+MPSMNPDGYE+++E
Sbjct: 76 VGRELLLNLIEYLCKNFGTDPEVTDLVQSTRIHIMPSMNPDGYEKSQEGDRGGTVGRNNS 135
Query: 109 -------------------------AVEKWLQDIPFVLSANLHGGSLVANYPYDDNQAMK 143
AV WL+ PFVLSANLHGGSLV NYP+DD++
Sbjct: 136 NNYDLNRNFPDQFFQVTDPPQPETLAVMSWLKTYPFVLSANLHGGSLVVNYPFDDDEQ-G 194
Query: 144 PQVDSPTPDDSIFKLLASSYANAHKKMYKDPGCPE-YPEENFPGGIVNGAQWYVVSGGMQ 202
+ S +PDD++F+ LA SY+ +KKMY+ C + YP E FP GI NGAQWY V GGMQ
Sbjct: 195 IAIYSKSPDDAVFQQLALSYSKENKKMYQGSPCKDLYPTEYFPHGITNGAQWYNVPGGMQ 254
Query: 203 DYNYIHANTLEITLELGCYKFPPAKDLPSYWEDNLPALLSYIEQVHRGVAGFVK-GREGE 261
D+NY++ N E+T+ELGC K+P A++LP YWE N +LL +I+QVHRG+ GFV +G
Sbjct: 255 DWNYLNTNCFEVTIELGCVKYPKAEELPKYWEQNRRSLLQFIKQVHRGIWGFVLDATDGR 314
Query: 262 GVAEASIAVEGLGHVVYSAQDGDYWRLLAPGNYTLHVSAPG 302
G+ A+I+V + H V + +DGDYWRLL G Y + SA G
Sbjct: 315 GILNATISVADINHPVTTYKDGDYWRLLVQGTYKVTASARG 355
>3mn8_A LP15968P; catalytic domain of alpha/beta-hydrolase fold,
C-terminal, A transthyretin-like domain, hydrolase; HET:
NAG GEM; 2.70A {Drosophila melanogaster}
Length = 435
Score = 364 bits (936), Expect = e-125
Identities = 130/350 (37%), Positives = 195/350 (55%), Gaps = 52/350 (14%)
Query: 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEV 60
++ + K YPN +++ +G+S+E R L L++S + P KY+ANMHG+E
Sbjct: 46 LEDLFAGLEKAYPNQAKVHFLGRSLEGRNLLALQISRNTRSRNLLTPPVKYIANMHGDET 105
Query: 61 VGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYERARE------------ 108
VGR+LL+ +AQYL N++ + +++ +T I+L+P+MNPDGY ++E
Sbjct: 106 VGRQLLVYMAQYLLGNHERISDLGQLVNSTDIYLVPTMNPDGYALSQEGNCESLPNYVGR 165
Query: 109 ----------------------------------AVEKWLQDIPFVLSANLHGGSLVANY 134
A+ W+ PFVLSAN HGG++VA+Y
Sbjct: 166 GNAANIDLNRDFPDRLEQSHVHQLRAQSRQPETAALVNWIVSKPFVLSANFHGGAVVASY 225
Query: 135 PYDDNQAM-KPQVDSPTPDDSIFKLLASSYANAHKKMYKDPGCPEYPEENFPGGIVNGAQ 193
PYD++ A + +S TPDD +FK LA +Y++ H M K C ++F GGI NGA
Sbjct: 226 PYDNSLAHNECCEESLTPDDRVFKQLAHTYSDNHPIMRKGNNC----NDSFSGGITNGAH 281
Query: 194 WYVVSGGMQDYNYIHANTLEITLELGCYKFPPAKDLPSYWEDNLPALLSYIEQVHRGVAG 253
WY +SGGMQD+NY +N E+T+EL C K+P A LP W+ N +LL + Q H G+ G
Sbjct: 282 WYELSGGMQDFNYAFSNCFELTIELSCCKYPAASTLPQEWQRNKASLLQLLRQAHIGIKG 341
Query: 254 FVKGREGEGVAEASIAVEGLGH-VVYSAQDGDYWRLLAPGNYTLHVSAPG 302
V G +A+A++ V GL + +++ G+YWRLL PG Y++H SA G
Sbjct: 342 LVTDASGFPIADANVYVAGLEEKPMRTSKRGEYWRLLTPGLYSVHASAFG 391
>1uwy_A Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease,
zinc, lipoprotein, hydrolase, structural proteomics in
europe, spine; HET: NAG; 3.0A {Homo sapiens} SCOP:
b.3.2.1 c.56.5.1
Length = 426
Score = 351 bits (901), Expect = e-120
Identities = 145/343 (42%), Positives = 202/343 (58%), Gaps = 43/343 (12%)
Query: 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEV 60
M+A L+ + +NY ++T L+S+G+SV+ R LWVL + P H+ G+PEFKYVANMHG+E
Sbjct: 11 MEAFLKTVAQNYSSVTHLHSIGKSVKGRNLWVLVVGRFPKEHRIGIPEFKYVANMHGDET 70
Query: 61 VGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYERARE------------ 108
VGRELLL L YL + D +T ++ +TRIH+MPSMNPDG+E ++
Sbjct: 71 VGRELLLHLIDYLVTSDGKDPEITNLINSTRIHIMPSMNPDGFEAVKKPDCYYSIGRENY 130
Query: 109 -------------------------AVEKWLQDIPFVLSANLHGGSLVANYPYDDNQAMK 143
AV KWL+ FVLSANLHGG+LVA+YP+D+
Sbjct: 131 NQYDLNRNFPDAFEYNNVSRQPETVAVMKWLKTETFVLSANLHGGALVASYPFDNGVQAT 190
Query: 144 PQVD--SPTPDDSIFKLLASSYANAHKKMYKDPGCPEYPEENFPGGIVNGAQWYVVSGGM 201
+ S TPDD +F+ LA +YA+ + M K C + NFP G+ NG WY + GGM
Sbjct: 191 GALYSRSLTPDDDVFQYLAHTYASRNPNMKKGDECKN--KMNFPNGVTNGYSWYPLQGGM 248
Query: 202 QDYNYIHANTLEITLELGCYKFPPAKDLPSYWEDNLPALLSYIEQVHRGVAGFVKGREGE 261
QDYNYI A EITLEL C K+P + LPS+W +N +L+ YI+QVH GV G V + G
Sbjct: 249 QDYNYIWAQCFEITLELSCCKYPREEKLPSFWNNNKASLIEYIKQVHLGVKGQVFDQNGN 308
Query: 262 GVAEASIAVEGLGHV--VYSAQDGDYWRLLAPGNYTLHVSAPG 302
+ + V+ H+ + + G+Y+ LL PG+Y ++V+ PG
Sbjct: 309 PLPNVIVEVQDRKHICPYRTNKYGEYYLLLLPGSYIINVTVPG 351
>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc
peptidase, transthyretin-like domain, processing,
peptide modification, hydrolase; HET: NAG; 2.10A {Homo
sapiens}
Length = 439
Score = 213 bits (543), Expect = 2e-66
Identities = 99/215 (46%), Positives = 133/215 (61%), Gaps = 13/215 (6%)
Query: 97 SMNPDGYERARE----AVEKWLQDIPFVLSANLHGGSLVANYPYDDN-----QAMKPQVD 147
PD ++ E AV +W+ FVLSANLHGG++VANYPYD + + ++
Sbjct: 164 LPLPDNWKSQVEPETRAVIRWMHSFNFVLSANLHGGAVVANYPYDKSFEHRVRGVRRTAS 223
Query: 148 SPTPDDSIFKLLASSYANAHKKMYKDPGCPEYPEENFPGGIVNGAQWYVVSGGMQDYNYI 207
+PTPDD +F+ LA Y+ AH M++ C +Y FP GI NGA WY +S GMQD+NY+
Sbjct: 224 TPTPDDKLFQKLAKVYSYAHGWMFQGWNCGDY----FPDGITNGASWYSLSKGMQDFNYL 279
Query: 208 HANTLEITLELGCYKFPPAKDLPSYWEDNLPALLSYIEQVHRGVAGFVKGREGEGVAEAS 267
H N EITLEL C KFPP ++L W N AL+ ++EQVH+G+ G V + +A A
Sbjct: 280 HTNCFEITLELSCDKFPPEEELQREWLGNKEALIQFLEQVHQGIKGMVLDQNYNNLANAV 339
Query: 268 IAVEGLGHVVYSAQDGDYWRLLAPGNYTLHVSAPG 302
I+V G+ H V S GDY+RLL PG YT+ +APG
Sbjct: 340 ISVSGINHDVTSGDHGDYFRLLLPGIYTVSATAPG 374
Score = 158 bits (401), Expect = 2e-45
Identities = 56/109 (51%), Positives = 80/109 (73%), Gaps = 1/109 (0%)
Query: 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEV 60
+ L + P +TR+YS+G+SVE R L+VLE S HPG+H+P PE KYV NMHGNE
Sbjct: 12 LVRTLYKVQNECPGITRVYSIGRSVEGRHLYVLEFSDHPGIHEPLEPEVKYVGNMHGNEA 71
Query: 61 VGRELLLLLAQYLCQNYK-IDDRVTRMLQTTRIHLMPSMNPDGYERARE 108
+GREL+L L+++LC+ ++ + R+ +++Q TRIH++PSMNPDGYE A
Sbjct: 72 LGRELMLQLSEFLCEEFRNRNQRIVQLIQDTRIHILPSMNPDGYEVAAA 120
>3prt_A Carboxypeptidase T; hydrolase; 1.66A {Thermoactinomyces vulgaris}
PDB: 1obr_A 3qnv_A
Length = 323
Score = 128 bits (323), Expect = 5e-35
Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 1/108 (0%)
Query: 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEV 60
M ++ + NYPN+ + +S+G+S E RELW +++S + G PE Y A H E
Sbjct: 15 MVNKINTVASNYPNIVKKFSIGKSYEGRELWAVKISDNVGTD-ENEPEVLYTALHHAREH 73
Query: 61 VGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYERARE 108
+ E+ L QNY +D R+T ++ I+++ ++NPDG E
Sbjct: 74 LTVEMALYTLDLFTQNYNLDSRITNLVNNREIYIVFNINPDGGEYDIS 121
Score = 103 bits (258), Expect = 9e-26
Identities = 28/152 (18%), Positives = 48/152 (31%), Gaps = 29/152 (19%)
Query: 109 AVEKWLQDI------PFVLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLLASS 162
A+ ++ H S + YPY P D D ++FK +A++
Sbjct: 181 AMRDFINSRVVGGKQQIKTLITFHTYSELILYPYSYTYTDVPS-DMTQDDFNVFKTMANT 239
Query: 163 YANAHKKMYKDPGCPEYPEENFPGGIVNGAQWYVVSGGMQDYNYIHANTLEITLELGCYK 222
A + + G+ Y+ GGM D+ Y T E+
Sbjct: 240 MAQTNGYTPQ-----------------QGSDLYIADGGMDDWAYGQHKIFAFTFEMYPTS 282
Query: 223 -----FPPAKDLPSYWEDNLPALLSYIEQVHR 249
+PP + + N A+L E+
Sbjct: 283 YNPGFYPPDEVIGRETSRNKEAVLYVAEKADC 314
>4a37_A Metallo-carboxypeptidase; metallo-protease, hydrolase; 1.60A
{Pseudomonas aeruginosa} PDB: 4a38_A 4a39_A*
Length = 388
Score = 122 bits (306), Expect = 3e-32
Identities = 47/281 (16%), Positives = 86/281 (30%), Gaps = 57/281 (20%)
Query: 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEV 60
A L + RL +VG SV+ R++ +L + HP + +A H E
Sbjct: 130 RHARLVERALGIEGVERL-AVGTSVQGRDIELLRVRRHP----DSHLKLWVIAQQHPGEH 184
Query: 61 VGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYERAR------------- 107
+ + L + L + D + R+L+ ++L+P+MNPDG
Sbjct: 185 MAEWFMEGLIERLQRPD--DTEMQRLLEKADLYLVPNMNPDGAFHGNLRTNAAGQDLNRA 242
Query: 108 ------------EAVEKWLQDIPFVLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDDSI 155
V++ ++ L ++HG + + + TP
Sbjct: 243 WLEPSAERSPEVWFVQQEMKRHGVDLFLDIHGDEEIPHVFAAGCEG----NPGYTPRLER 298
Query: 156 FKLLASSYANAHKKMYKDPGCPEYPEENFPGGIVNGAQWYVVSGGMQDYNYIHANTLEIT 215
+ A + G P G N A G D L T
Sbjct: 299 LEQRFREELMARGEFQIRHGYP-----RSAPGQANLALACNFVGQTYD-------CLAFT 346
Query: 216 LELGCYKFPPAKDLPSYWEDN---------LPALLSYIEQV 247
+E+ + + W L L ++++
Sbjct: 347 IEMPFKDHDDNPEPGTGWSGARSKRLGQDVLSTLAVLVDEL 387
>3k2k_A Putative carboxypeptidase; structural genomics, joint center
structural genomics, JCSG, protein structure initiative;
2.49A {Burkholderia mallei atcc 23344}
Length = 403
Score = 109 bits (273), Expect = 2e-27
Identities = 40/272 (14%), Positives = 76/272 (27%), Gaps = 52/272 (19%)
Query: 11 NYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEVVGRELLLLLA 70
+ +G++VE R + ++ L T P + +A H E + + L
Sbjct: 146 QQMPQASVVELGRTVEGRPMSLVVLGT-PDEAGAAKKKVWIIARQHPGESMAEWFIEGLV 204
Query: 71 QYLC--QNYKIDDRVTRMLQTTRIHLMPSMNPDGYERARE-------------------- 108
+ L ++ D ++ +++P+MNPDG
Sbjct: 205 KRLVGWGDWSGDPVARKLYDHATFYIVPNMNPDGSVHGNLRTNAAGANLNREWMEPDAER 264
Query: 109 -----AVEKWLQDIPFVLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLLASSY 163
V + I L ++HG + ++ + S+
Sbjct: 265 SPEVLVVRDAIHAIGCDLFFDIHGDEDLPYVFAAGSEMLP---GFTEQQRVEQSAFIDSF 321
Query: 164 ANAHKKMYKDPGCPEYPEENFPGGIVNGAQWYVVSGGMQDYNYIHANTLEITLELGCYKF 223
A + G YP + A Y+ L +TLE+
Sbjct: 322 KRASPDFQDEHG---YPPGKYREDAFKLASKYI---------GHRFGCLSLTLEMPFKDN 369
Query: 224 PPAKDLPSYWEDN---------LPALLSYIEQ 246
D W L A+L ++
Sbjct: 370 ANLPDEHIGWNGARSASLGAAMLGAILEHVRA 401
>3b2y_A Metallopeptidase containing CO-catalytic metalloa site;
metallopeptidase containing CO-catalytic metalloactive
site; 1.74A {Shewanella denitrificans OS217} PDB:
3ieh_A*
Length = 275
Score = 92.2 bits (228), Expect = 5e-22
Identities = 35/273 (12%), Positives = 74/273 (27%), Gaps = 52/273 (19%)
Query: 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEV 60
+ A + + L + SV+ + + + ++ + +P + HG E
Sbjct: 25 IDAFYAQLAEEVNRLGLKKNTLGSVDSFAINLYQSASQ----RSDLPSLLISSGFHGEEA 80
Query: 61 VGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYERAR------------- 107
G +L + L + + L+P +NP G++
Sbjct: 81 AGPWGMLHFLRGLQPAL---------FERVNLSLLPLVNPTGFKAGHRFNRFGENPNRGF 131
Query: 108 -------------EAVEKWLQDIPFVLSANLHGGSLVANYPYDDNQAMKPQVDSPTPDDS 154
K L + +L A G L + D + V S P +
Sbjct: 132 TLENGKPTPNEHTSLEGKLLLEHAQLLCAASRDGILTCHE---DVLMNETYVYSFEPTQT 188
Query: 155 IFKLLASSYANAHKKMYKDPGCPEYPEENFPGGIVNGAQWYVVSGGMQDYNYIHANTLEI 214
+ + + + P + +G + + + L
Sbjct: 189 PGRFSLGLRDALGQYF---KLAKDGFIDECP--VTDGVIFNHFDTSFEAFLVRSGAKLAA 243
Query: 215 TLELGCYKFPPAKDLPSYWEDNLPALLSYIEQV 247
E P +D + N A+ +I
Sbjct: 244 CSET-----PGQEDFDRRVQANSAAMGQFIAHC 271
>3d4u_A Tafia, carboxypeptidase B2; protease-inhibitor complex,
glycoprotein, hydrolase, metal-binding, metalloprotease,
protease, secret zymogen; 1.70A {Bos taurus} PDB: 3lms_A
Length = 309
Score = 88.6 bits (220), Expect = 2e-20
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 3/113 (2%)
Query: 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEV 60
+ + +E +T+ YP++ +G S EK L+VL++S K + +H E
Sbjct: 15 IYSWIEVMTERYPDMVEKIHIGSSYEKYPLYVLKVSKKEQRAKNAM---WIDCGIHAREW 71
Query: 61 VGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYERAREAVEKW 113
+ L + Y + T +L+ ++MP +N DGY+ + W
Sbjct: 72 ISPAFCLWFVGSVTYYYGKEKMHTNLLKHMDFYIMPVVNVDGYDYTWKKDRMW 124
>2bo9_A Carboxypeptidase A4; metallocarboxypeptidase, X-RAY endogenous
protein inhibitor, metalloprotease carboxypeptidase,
hydrolase; HET: NAG; 1.6A {Homo sapiens} SCOP: c.56.5.1
PDB: 4a94_A 2pcu_A*
Length = 308
Score = 88.6 bits (220), Expect = 2e-20
Identities = 33/104 (31%), Positives = 58/104 (55%), Gaps = 3/104 (2%)
Query: 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEV 60
+ E+++I ++P+L R +G S E R ++VL+ ST GV +P V + A +H E
Sbjct: 16 IYHEMDNIAADFPDLARRVKIGHSFENRPMYVLKFSTGKGVRRPAV--W-LNAGIHSREW 72
Query: 61 VGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYE 104
+ + + A+ + +Y+ D +T +L+ I L+P NPDGY
Sbjct: 73 ISQATAIWTARKIVSDYQRDPAITSILEKMDIFLLPVANPDGYV 116
>3dgv_A TAFI, carboxypeptidase B2; blood coagulation, fibrinolysis, protein
S glycoprotein, hydrolase, metal-binding,
metalloprotease, PR secreted, zymogen; HET: NAG NDG FUL
BMA; 2.50A {Bos taurus} PDB: 3osl_A 3d68_A* 3d66_A*
3d67_A*
Length = 401
Score = 86.4 bits (214), Expect = 3e-19
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 3/113 (2%)
Query: 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEV 60
+ + +E +T+ YP++ +G S EK L+VL++S K + +H E
Sbjct: 107 IYSWIEVMTERYPDMVEKIHIGSSYEKYPLYVLKVSKKEQRAKNAM---WIDCGIHAREW 163
Query: 61 VGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYERAREAVEKW 113
+ L + Y + T +L+ ++MP +N DGY+ + W
Sbjct: 164 ISPAFCLWFVGSVTYYYGKEKMHTNLLKHMDFYIMPVVNVDGYDYTWKKDRMW 216
>1m4l_A Carboxypeptidase A; metalloproteinase, metalloexoproteinase,
hydrolase; 1.25A {Bos taurus} SCOP: c.56.5.1 PDB: 1cpx_A
1arl_A 1f57_A 2rfh_A* 3i1u_A* 1arm_A 1ell_P 1elm_P
1ee3_P 1zlh_A 2abz_A 3hlp_A 3huv_A 1yme_A* 3fvl_A*
3fx6_A* 2ctc_A* 1hdq_A 2ctb_A* 3kgq_A* ...
Length = 307
Score = 85.2 bits (211), Expect = 3e-19
Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 4/113 (3%)
Query: 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEV 60
+ ++ + +P L +G+S E R ++VL+ ST P +H E
Sbjct: 18 IYDFMDLLVAEHPQLVSKLQIGRSYEGRPIYVLKFSTGGS----NRPAIWIDLGIHSREW 73
Query: 61 VGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYERAREAVEKW 113
+ + + A+ ++Y D T +L + I L NPDG+ W
Sbjct: 74 ITQATGVWFAKKFTEDYGQDPSFTAILDSMDIFLEIVTNPDGFAFTHSQNRLW 126
>1z5r_A Procarboxypeptidase B; exopeptidase, hydrolase; 1.40A {Sus scrofa}
SCOP: c.56.5.1 PDB: 1zg7_A* 1zg8_A* 1zg9_A* 2jew_A*
2piy_A* 2piz_A* 2pj0_A* 2pj1_A* 2pj2_A* 2pj3_A* 2pj4_A*
2pj5_A* 2pj6_A* 2pj7_A* 2pj8_A* 2pj9_A* 2pja_A* 2pjb_A*
2pjc_A* 1zli_A ...
Length = 306
Score = 85.2 bits (211), Expect = 3e-19
Identities = 21/113 (18%), Positives = 44/113 (38%), Gaps = 4/113 (3%)
Query: 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEV 60
++A + +T P+L ++G + +++L++ PG +KP + H E
Sbjct: 15 IEAWTKQVTSENPDLISRTAIGTTFLGNNIYLLKVGK-PGPNKPAI---FMDCGFHAREW 70
Query: 61 VGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYERAREAVEKW 113
+ + Y + +T L +++P +N DGY W
Sbjct: 71 ISHAFCQWFVREAVLTYGYESHMTEFLNKLDFYVLPVLNIDGYIYTWTKNRMW 123
Score = 29.7 bits (67), Expect = 1.2
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Query: 195 YVVSGGMQDYNYIHANTLEITLEL---GCYKF-PPAKDLPSYWEDNLPALLSYIEQV 247
Y +GG D+ Y T EL G Y F P + + E+ + A+ V
Sbjct: 246 YPAAGGSDDWAYDQGIKYSFTFELRDKGRYGFILPESQIQATCEETMLAIKYVTNYV 302
>2boa_A Carboxypeptidase A4; metalloprocarboxypeptidase, X-RAY zymogen,
metalloprotease, exopropeptidase, hydrolase; HET: NAG;
2.20A {Homo sapiens} SCOP: c.56.5.1 d.58.3.1
Length = 404
Score = 84.9 bits (210), Expect = 9e-19
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEV 60
+ E+++I ++P+L R +G S E R ++VL+ ST GV +P V A +H E
Sbjct: 112 IYHEMDNIAADFPDLARRVKIGHSFENRPMYVLKFSTGKGVRRPAV---WLNAGIHSREW 168
Query: 61 VGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYERAREAVEKW 113
+ + + A+ + +Y+ D +T +L+ I L+P NPDGY + W
Sbjct: 169 ISQATAIWTARKIVSDYQRDPAITSILEKMDIFLLPVANPDGYVYTQTQNRLW 221
>2qvp_A Uncharacterized protein; putative metallopeptidase, structural
genomics, joint center structural genomics, JCSG; HET:
MSE; 2.00A {Shewanella amazonensis}
Length = 275
Score = 83.2 bits (205), Expect = 9e-19
Identities = 35/271 (12%), Positives = 74/271 (27%), Gaps = 44/271 (16%)
Query: 8 ITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVH----------KPGVPEFKYVANMHG 57
++ R YS+ +R ++ G H K G+P A HG
Sbjct: 17 FECQSTDIQRFYSLLAIETERLGLGSKILGQAGHHPLYLLQSPGQKAGLPNLLISAGFHG 76
Query: 58 NEVVGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYER-----------A 106
E G LL L + + ++P +NP G+ +
Sbjct: 77 EESAGPWGLLHFLSQLDGEL---------FKRVNLSVLPLVNPTGFAKGHRFNELGENPN 127
Query: 107 REAVEKWLQDIPFVLSANLHGGSLVANYPYDDNQAMKPQV----DSPTPDDSIFKLLASS 162
R + + P ++ L+ + + + D D ++ S
Sbjct: 128 RGFFIENGKAKPGADTSAEGR-ILLEHAHLLQVASRDGILTCHEDVLMTDTYVYTFEPSQ 186
Query: 163 YANAHKKMYKD---PGCPEYPEENFPG-GIVNGAQWYVVSGGMQDYNYIHANTLEITLEL 218
+D P + + + +G + + + + E
Sbjct: 187 APGRFSHSLRDALGQYFPIAADGDVDNCPVRSGVIFNHFDTSFESFLVRSGARVGCCSET 246
Query: 219 GCYKFPPAKDLPSYWEDNLPALLSYIEQVHR 249
P + L N A+ +++ +
Sbjct: 247 -----PGQQPLDQRILANAAAMNTFVNMLAP 272
>1dtd_A Carboxypeptidase A2; carboxypeptidase A2, leech carboxypeptidase
inhibitor, hydrolase/hydrolase inhibitor complex; HET:
GLU; 1.65A {Homo sapiens} SCOP: c.56.5.1
Length = 303
Score = 82.8 bits (205), Expect = 2e-18
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 5/104 (4%)
Query: 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEV 60
+ E++++ +P L ++G S E R + VL+ S P A +H E
Sbjct: 12 ISQEMDNLVAEHPGLVSKVNIGSSFENRPMNVLKFS-----TGGDKPAIWLDAGIHAREW 66
Query: 61 VGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYE 104
V + L A + +Y D +T +L I L+P NPDGY
Sbjct: 67 VTQATALWTANKIVSDYGKDPSITSILDALDIFLLPVTNPDGYV 110
Score = 28.9 bits (65), Expect = 1.8
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 195 YVVSGGMQDYNYIHANTLEITLEL---GCYKF-PPAKDLPSYWEDNLPALLSYIEQVHR 249
Y SGG D++Y + EL G Y F PA+ + E+ L + +E V
Sbjct: 242 YQASGGSIDWSYDYGIKYSFAFELRDTGRYGFLLPARQILPTAEETWLGLKAIMEHVRD 300
>1kwm_A Procarboxypeptidase B; hydrolase; HET: CIT; 1.60A {Homo sapiens}
SCOP: c.56.5.1 d.58.3.1 PDB: 3glj_A 1nsa_A 1pba_A
Length = 402
Score = 83.3 bits (206), Expect = 3e-18
Identities = 20/113 (17%), Positives = 41/113 (36%), Gaps = 4/113 (3%)
Query: 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEV 60
++A + + P L +G + E R +++L++ P H E
Sbjct: 110 IEAWTQQVATENPALISRSVIGTTFEGRAIYLLKVGKAG----QNKPAIFMDCGFHAREW 165
Query: 61 VGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYERAREAVEKW 113
+ + + Y + +VT +L +++P +N DGY W
Sbjct: 166 ISPAFCQWFVREAVRTYGREIQVTELLNKLDFYVLPVLNIDGYIYTWTKSRFW 218
Score = 30.5 bits (69), Expect = 0.70
Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 195 YVVSGGMQDYNYIHANTLEITLEL---GCYKF-PPAKDLPSYWEDNLPALLSYIEQVHR 249
Y +GG D+ Y T EL G Y F P + + E+ A+ V
Sbjct: 341 YPAAGGSDDWAYDQGIRYSFTFELRDTGRYGFLLPESQIRATCEETFLAIKYVASYVLE 399
>2c1c_A Carboxypeptidase B; insect, metalloprotease, insensitive, plant
inhibitors, hydrolase; 2.3A {Helicoverpa zea} SCOP:
c.56.5.1
Length = 312
Score = 80.9 bits (200), Expect = 1e-17
Identities = 21/104 (20%), Positives = 44/104 (42%), Gaps = 5/104 (4%)
Query: 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEV 60
+ L++I + YP++ + + +S E R + +++ST P +H E
Sbjct: 12 IDEYLDYIGEKYPDVATVVNAAESFEGRPIKYIKISTTNF-EDENKPVIFIDGGIHAREW 70
Query: 61 VGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYE 104
+ + L ++ +L+ L+P +NPDGY+
Sbjct: 71 ISPPSVTWAIHKLVEDVT----ENDLLEKFDWILLPVVNPDGYK 110
>1pca_A Procarboxypeptidase A PCPA; hydrolase(C-terminal peptidase); HET:
CIT; 2.00A {Sus scrofa} SCOP: d.58.3.1 PDB: 1pyt_A
Length = 403
Score = 81.0 bits (200), Expect = 2e-17
Identities = 24/113 (21%), Positives = 47/113 (41%), Gaps = 4/113 (3%)
Query: 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEV 60
+ ++ + +P L +G+S E R ++VL+ ST P + +H E
Sbjct: 113 IYDFMDILVAEHPALVSKLQIGRSYEGRPIYVLKFSTGGS----NRPAIWIDSGIHSREW 168
Query: 61 VGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYERAREAVEKW 113
+ + + A+ + +NY + T +L + I L NP+G+ W
Sbjct: 169 ITQASGVWFAKKITENYGQNSSFTAILDSMDIFLEIVTNPNGFAFTHSDNRLW 221
Score = 30.1 bits (68), Expect = 0.81
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 195 YVVSGGMQDYNYIHANTLEITLEL---GCYKF-PPAKDLPSYWEDNLPALLSYIEQV 247
Y SGG+ D+ Y + EL G F PA + ++ ALL+ +E
Sbjct: 343 YQASGGVIDWTYNQGIKYSFSFELRDTGRRGFLLPASQIIPTAQETWLALLTIMEHT 399
>1jqg_A Carboxypeptidase A; Pro-protein, hydrolase; 2.50A {Helicoverpa
armigera} SCOP: c.56.5.1 d.58.3.1
Length = 433
Score = 81.0 bits (200), Expect = 2e-17
Identities = 25/113 (22%), Positives = 42/113 (37%), Gaps = 5/113 (4%)
Query: 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEV 60
+ A L+ + K +PN+ + G+S E R + L +ST P + +H E
Sbjct: 127 VDAYLQELAKEFPNVVTVVEGGKSFEGRSIKYLRIST-TNFQDASKPVVMMQSLLHCREW 185
Query: 61 VGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYERAREAVEKW 113
V L L + + ++ ++P NPDGY W
Sbjct: 186 VTLPATLYAIHKLVIDVT----ESDLINNIDWIILPVANPDGYVHTFGGDRYW 234
>1aye_A PCPA2, procarboxypeptidase A2; serine protease, zymogen, hydrolase;
1.80A {Homo sapiens} SCOP: c.56.5.1 d.58.3.1 PDB: 1o6x_A
Length = 401
Score = 79.4 bits (196), Expect = 6e-17
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 5/113 (4%)
Query: 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEV 60
+ E++++ +P L ++G S E R + VL+ S P A +H E
Sbjct: 111 ISQEMDNLVAEHPGLVSKVNIGSSFENRPMNVLKFS-----TGGDKPAIWLDAGIHAREW 165
Query: 61 VGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYERAREAVEKW 113
V + L A + +Y D +T +L I L+P NPDGY ++ W
Sbjct: 166 VTQATALWTANKIVSDYGKDPSITSILDALDIFLLPVTNPDGYVFSQTKNRMW 218
>3l2n_A Peptidase M14, carboxypeptidase A; putative carboxypeptidase A,
structural genomics, joint CENT structural genomics,
JCSG; 2.39A {Shewanella denitrificans}
Length = 395
Score = 62.9 bits (152), Expect = 2e-11
Identities = 41/274 (14%), Positives = 79/274 (28%), Gaps = 57/274 (20%)
Query: 11 NYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEVVGRELLLLLA 70
L +G +++ R++ ++++ G P A H E + L+ L
Sbjct: 144 QLHPLVSTEHLGLTLDGRDMTLVKV----GDDDPSKKSIWITARQHPGETMAEWLVEGLL 199
Query: 71 QYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYERARE---------------------- 108
L N +L +++P+MNPDG R
Sbjct: 200 NQLLDND--CPTSKALLDKANFYIVPNMNPDGSVRGHLRTNAVGANLNREWQTPSLERSP 257
Query: 109 ---AVEKWLQDIPFVLSANLHGGSLVAN-YPYDDNQAMKPQVDSPTPDDSIFKLLASSYA 164
V + + L ++HG + + P D + L +
Sbjct: 258 EVYYVVNKMHETGVDLFYDVHGDEGLPYVFLAGCEG-------IPNYSDKL-ASLQQDFV 309
Query: 165 NAHKKMYKDPGCPEYPEENFPGGIVNGAQWYVVSGGMQDYNYIHANTLEITLELGCYKFP 224
A D +++ PG ++ L TLE+
Sbjct: 310 AALSLASADFQTEFGYDKDEPG--------KANLTVACNWVANTFKCLSNTLEMPFKDNA 361
Query: 225 PAKDLPSYW---------EDNLPALLSYIEQVHR 249
D W E +L A+ + I+++ +
Sbjct: 362 NLADPFQGWSPERSVYFGEASLIAMRAVIDKIGQ 395
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.9 bits (116), Expect = 1e-06
Identities = 51/350 (14%), Positives = 100/350 (28%), Gaps = 128/350 (36%)
Query: 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVA---NMHG 57
L + + + ++++ G ++ + W+ +P + P + + G
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGLNILE---WL----ENPS-NTPDKDYLLSIPISCPLIG 242
Query: 58 NEVVGRELLLLLAQYL--CQNYKID-DRVTRMLQTTRIH-------LMPSMNPDG---YE 104
++ LA Y+ + + L+ H + + +
Sbjct: 243 --------VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFV 294
Query: 105 RAREAVEKWLQDIPFVLSANLHGGSLVANYPYDDNQAMKPQV--DS-------PTP---- 151
R+A+ L F + + YP N ++ P + DS P+P
Sbjct: 295 SVRKAIT-VL----FFIGVRCYEA-----YP---NTSLPPSILEDSLENNEGVPSPMLSI 341
Query: 152 ----DDSIFKLLASSYANAHKKMYKDPGCPEYPEENFPGGI--VNGAQWYVVSGGMQDYN 205
+ + + N+H P I VNGA+ VVSG
Sbjct: 342 SNLTQEQVQDYVN--KTNSHL-----------PAGK-QVEISLVNGAKNLVVSG------ 381
Query: 206 YIHANTLE-ITLELGCYKFPPAKD-----------------LP-------SYWEDNLPAL 240
+L + L L K P D LP L
Sbjct: 382 --PPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHL-------L 432
Query: 241 LSYIEQVHRGVAGFVKGREGEGVAEASIAVEGLGHVVYSAQDGDYWRLLA 290
+ + +++ + S + + VY DG R+L+
Sbjct: 433 VPASDLINKDLVK----------NNVSFNAKDIQIPVYDTFDGSDLRVLS 472
Score = 28.9 bits (64), Expect = 2.9
Identities = 7/16 (43%), Positives = 8/16 (50%), Gaps = 5/16 (31%)
Query: 188 IVN----GAQWYVVSG 199
IVN Q YV +G
Sbjct: 1843 IVNYNVENQQ-YVAAG 1857
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.7 bits (115), Expect = 2e-06
Identities = 48/279 (17%), Positives = 85/279 (30%), Gaps = 78/279 (27%)
Query: 8 ITKNYPN-LTRLYSVGQSVEKREL-----------WVLELSTHPGV--HKPGVPEFKYVA 53
+T+ Y RLY+ Q K + +LEL V G
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID--G-------- 157
Query: 54 NMHGNEVVGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYERAREAVEKW 113
+ G G+ + L C +YK+ ++ +I + ++ + E V +
Sbjct: 158 -VLG---SGKTWVALDV---CLSYKVQCKMDF-----KIFWL-NL---KNCNSPETVLEM 201
Query: 114 LQDIPFVLSANLH-GGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLLAS-SYANA----- 166
LQ + + + N +N + + +LL S Y N
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSI----------QAELRRLLKSKPYENCLLVLL 251
Query: 167 ---HKKMYK--DPGCP------EYPEENFPGGIVNGAQWYVVSGGMQDYNYIHANTLEIT 215
+ K + + C +F ++ A +S +
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDF----LSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 216 LE-LGCYKFPPAKDLPSYWEDNLPALLSYI-EQVHRGVA 252
L+ L C +DLP P LS I E + G+A
Sbjct: 308 LKYLDC----RPQDLPREVLTTNPRRLSIIAESIRDGLA 342
>1nnl_A L-3-phosphoserine phosphatase; PSP, HPSP, phospho-aspartyl,
hydrolase; 1.53A {Homo sapiens} SCOP: c.108.1.4 PDB:
1l8l_A* 1l8o_A
Length = 225
Score = 32.2 bits (74), Expect = 0.15
Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 12/37 (32%)
Query: 190 NGAQWYVVSGGMQ------------DYNYIHANTLEI 214
Q +++SGG + + AN L+
Sbjct: 101 RNVQVFLISGGFRSIVEHVASKLNIPATNVFANRLKF 137
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics,
joint center for structural genomics, JCSG, prote
structure initiative; HET: MSE; 1.80A {Shewanella
amazonensis} PDB: 3lwu_A*
Length = 368
Score = 29.5 bits (65), Expect = 1.2
Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 20/93 (21%)
Query: 22 GQSVEKRELWVLELSTHPGVH---------KPGVPEFKYVANMHGNEVVGRELLLLLAQY 72
G V+K E+ V EL+ + G P AN+HG EV G ++ L +
Sbjct: 1 GMRVDKHEVRVGELAAGQPLSLPVYRFKGKGAG-PSVYIQANVHGAEVQGNAVIYQLMKL 59
Query: 73 LCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYER 105
L I L+P NP G +
Sbjct: 60 LEHY----------ELLGDISLVPLANPLGINQ 82
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur,
iron-sulfur cluster, pyruvate catabolism, TPP-dependent
enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP:
c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB:
1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A*
2pda_A* 2uza_A*
Length = 1231
Score = 29.8 bits (67), Expect = 1.2
Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 73 LCQNYKIDDRVTRMLQTTRIHLM-PSMNPDGYERAREAVEKWLQDIPFVLS 122
L + + + + H+ + NPD Y + REA + +P +++
Sbjct: 193 LVNQKALAEFRAKSMNPEHPHVRGTAQNPDIYFQGREAANPYYLKVPGIVA 243
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics,
PSI-2, protein structure initiative; 2.10A {Rhodobacter
sphaeroides 2}
Length = 354
Score = 29.5 bits (65), Expect = 1.3
Identities = 17/105 (16%), Positives = 34/105 (32%), Gaps = 12/105 (11%)
Query: 43 KPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDG 102
G P +HG+E G+ + LA+ L R+ ++P++N
Sbjct: 51 GSG-PTVLLTGGVHGDEYEGQIAISDLARRLRPEEVQG----------RVIMLPAVNMPA 99
Query: 103 YERAREAVEKWLQDIPFVLSANLHGGSLVANYPYDDNQAMKPQVD 147
+ +DI + G+ + + + P D
Sbjct: 100 IQSDTRLSPVDGRDINRCFPGD-PRGTFSQMLAHFLDSVILPMAD 143
>2fea_A 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase;
2633731, structural genomics, joint center for
structural GE JCSG; HET: MSE; 2.00A {Bacillus subtilis}
SCOP: c.108.1.20
Length = 236
Score = 29.0 bits (65), Expect = 1.8
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 11/36 (30%)
Query: 190 NGAQWYVVSGGMQDY-----------NYIHANTLEI 214
+ +YV+SGGM + + I+ N
Sbjct: 92 HEIPFYVISGGMDFFVYPLLEGIVEKDRIYCNHASF 127
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural
genomics, joint center for structural genomics, J
protein structure initiative, PSI-2; HET: MSE; 2.00A
{Ruegeria SP}
Length = 331
Score = 29.0 bits (64), Expect = 1.8
Identities = 10/65 (15%), Positives = 16/65 (24%), Gaps = 11/65 (16%)
Query: 43 KPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDG 102
G HG+E G L LA + ++P N
Sbjct: 47 GAG-KTALLTGANHGDEYEGPVALQELAATTRAEDVTGRLI----------IVPYFNYPA 95
Query: 103 YERAR 107
+ +
Sbjct: 96 FRASA 100
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 1.8
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 15/36 (41%)
Query: 212 LEITLELGCYKFPPAKDLPSYWEDNLPALL--SYIE 245
L+ +L+L Y +D+ PAL + +E
Sbjct: 25 LQASLKL-------------YADDSAPALAIKATME 47
>2qj8_A MLR6093 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2,
hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Length = 332
Score = 29.1 bits (64), Expect = 2.0
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 11/63 (17%)
Query: 43 KPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDG 102
G P HGNE+ G L L ++L + + RI ++P +NP
Sbjct: 43 GEG-PSLLITGGNHGNELQGPILARRLVKWLPEA----------QRCGRIIIVPEINPLA 91
Query: 103 YER 105
+
Sbjct: 92 VQA 94
>1un2_A DSBA, thiol-disulfide interchange protein; disulfide
oxidoreductase, oxidoreductase, protein disulfide
isomerase, protein folding, thioredoxin; 2.4A
{Escherichia coli} SCOP: c.47.1.13
Length = 197
Score = 28.2 bits (62), Expect = 2.9
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Query: 220 CYKFPPAKDLPSYWEDNLPALLSYIEQVHRGVAGFVKGREGEGVAEASIAVEGLG 274
CY+F + + LP + + F+ G G+ + +A LG
Sbjct: 128 CYQFEEVLHISDNVKKKLPEGVKMT----KYHVNFMGGDLGKDLTQAWAVAMALG 178
>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics,
PSI, protein structure initiative; 2.33A {Vibrio
parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A
Length = 350
Score = 28.0 bits (62), Expect = 4.6
Identities = 10/76 (13%), Positives = 21/76 (27%), Gaps = 11/76 (14%)
Query: 32 VLELSTHPGVHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKIDDRVTRMLQTTR 91
VLE+ + +HG+E EL+ + + + +
Sbjct: 41 VLEV-IPENPTQET-KNIIISCGIHGDETAPMELVDSIIKDIESG---------FQKVDA 89
Query: 92 IHLMPSMNPDGYERAR 107
L +P+
Sbjct: 90 RCLFIIAHPESTLAHT 105
>1lq9_A Actva-ORF6 monooxygenase; aromatic polyketides, actinorhodin,
dihydroka streptomyces coelicolor, oxidoreductase; HET:
PG4; 1.30A {Streptomyces coelicolor} SCOP: d.58.4.3 PDB:
1n5q_A* 1n5s_A* 1n5t_A* 1n5v_A*
Length = 112
Score = 26.6 bits (58), Expect = 5.0
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 107 REAVEKWLQDIPFVLSANLH---GGSLVANY 134
V++W++++P LSA H G+ V NY
Sbjct: 32 TGGVQEWIREVPGFLSATYHASTDGTAVVNY 62
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP;
transcription, beta-propeller; HET: PGE PG4 MES 2PE;
2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Length = 795
Score = 28.0 bits (63), Expect = 5.2
Identities = 6/17 (35%), Positives = 6/17 (35%)
Query: 289 LAPGNYTLHVSAPGEDQ 305
L G Y V A D
Sbjct: 751 LPQGTYQFLVKAANSDG 767
>3ott_A Two-component system sensor histidine kinase; beta-propeller,
beta-sandwich, transcription; HET: TBR; 2.30A
{Bacteroides thetaiotaomicron}
Length = 758
Score = 27.7 bits (62), Expect = 6.1
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 289 LAPGNYTLHVSAPGEDQ 305
L+ GNY L +S D
Sbjct: 717 LSYGNYQLIISKLERDG 733
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid
(ONE-component...; beta-propeller, beta-sandwich; 3.30A
{Bacteroides thetaiotaomicron}
Length = 781
Score = 27.7 bits (62), Expect = 6.2
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 289 LAPGNYTLHVSAPGEDQ 305
+ PG Y V A +Q
Sbjct: 745 IPPGKYEFLVKARLHNQ 761
>1l7m_A Phosphoserine phosphatase; rossmann fold, four-helix bundle,
B-hairpin, structural genomics, BSGC structure funded by
NIH; 1.48A {Methanocaldococcus jannaschii} SCOP:
c.108.1.4 PDB: 1f5s_A 1l7n_A 1l7p_A* 1l7o_A* 1j97_A*
Length = 211
Score = 26.7 bits (60), Expect = 7.8
Identities = 10/35 (28%), Positives = 12/35 (34%), Gaps = 10/35 (28%)
Query: 190 NGAQWYVVSGGMQ----------DYNYIHANTLEI 214
G VVSGG +Y AN L +
Sbjct: 91 RGYVVAVVSGGFDIAVNKIKEKLGLDYAFANRLIV 125
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.136 0.418
Gapped
Lambda K H
0.267 0.0505 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,900,667
Number of extensions: 296975
Number of successful extensions: 807
Number of sequences better than 10.0: 1
Number of HSP's gapped: 761
Number of HSP's successfully gapped: 59
Length of query: 305
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 212
Effective length of database: 4,105,140
Effective search space: 870289680
Effective search space used: 870289680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.3 bits)