RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17404
(305 letters)
>d1uwya2 c.56.5.1 (A:1-296) Carboxypeptidase M, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 296
Score = 243 bits (621), Expect = 3e-80
Identities = 128/287 (44%), Positives = 168/287 (58%), Gaps = 41/287 (14%)
Query: 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEV 60
M+A L+ + +NY ++T L+S+G+SV+ R LWVL + P H+ G+PEFKYVANMHG+E
Sbjct: 11 MEAFLKTVAQNYSSVTHLHSIGKSVKGRNLWVLVVGRFPKEHRIGIPEFKYVANMHGDET 70
Query: 61 VGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYER--------------- 105
VGRELLL L YL + D +T ++ +TRIH+MPSMNPDG+E
Sbjct: 71 VGRELLLHLIDYLVTSDGKDPEITNLINSTRIHIMPSMNPDGFEAVKKPDCYYSIGRENY 130
Query: 106 ----------------------AREAVEKWLQDIPFVLSANLHGGSLVANYPYDD--NQA 141
AV KWL+ FVLSANLHGG+LVA+YP+D+
Sbjct: 131 NQYDLNRNFPDAFEYNNVSRQPETVAVMKWLKTETFVLSANLHGGALVASYPFDNGVQAT 190
Query: 142 MKPQVDSPTPDDSIFKLLASSYANAHKKMYKDPGCPEYPEENFPGGIVNGAQWYVVSGGM 201
S TPDD +F+ LA +YA+ + M K C NFP G+ NG WY + GGM
Sbjct: 191 GALYSRSLTPDDDVFQYLAHTYASRNPNMKKGDECKNK--MNFPNGVTNGYSWYPLQGGM 248
Query: 202 QDYNYIHANTLEITLELGCYKFPPAKDLPSYWEDNLPALLSYIEQVH 248
QDYNYI A EITLEL C K+P + LPS+W +N +L+ YI+QVH
Sbjct: 249 QDYNYIWAQCFEITLELSCCKYPREEKLPSFWNNNKASLIEYIKQVH 295
>d1h8la2 c.56.5.1 (A:4-304) Carboxypeptidase D, catalytic domain
{Crested duck (Lophonetta specularioides) [TaxId: 8836]}
Length = 301
Score = 237 bits (605), Expect = 7e-78
Identities = 148/287 (51%), Positives = 193/287 (67%), Gaps = 39/287 (13%)
Query: 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEV 60
M+ L YP++TRLYSVG+SVE REL+V+E+S +PG+H+ G PEFKY+ NMHGNEV
Sbjct: 16 MEIFLRRYANEYPSITRLYSVGKSVELRELYVMEISDNPGIHEAGEPEFKYIGNMHGNEV 75
Query: 61 VGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYERARE------------ 108
VGRELLL L +YLC+N+ D VT ++Q+TRIH+MPSMNPDGYE+++E
Sbjct: 76 VGRELLLNLIEYLCKNFGTDPEVTDLVQSTRIHIMPSMNPDGYEKSQEGDRGGTVGRNNS 135
Query: 109 -------------------------AVEKWLQDIPFVLSANLHGGSLVANYPYDDNQAMK 143
AV WL+ PFVLSANLHGGSLV NYP+DD++
Sbjct: 136 NNYDLNRNFPDQFFQVTDPPQPETLAVMSWLKTYPFVLSANLHGGSLVVNYPFDDDEQ-G 194
Query: 144 PQVDSPTPDDSIFKLLASSYANAHKKMYKDPGCPE-YPEENFPGGIVNGAQWYVVSGGMQ 202
+ S +PDD++F+ LA SY+ +KKMY+ C + YP E FP GI NGAQWY V GGMQ
Sbjct: 195 IAIYSKSPDDAVFQQLALSYSKENKKMYQGSPCKDLYPTEYFPHGITNGAQWYNVPGGMQ 254
Query: 203 DYNYIHANTLEITLELGCYKFPPAKDLPSYWEDNLPALLSYIEQVHR 249
D+NY++ N E+T+ELGC K+P A++LP YWE N +LL +I+QVHR
Sbjct: 255 DWNYLNTNCFEVTIELGCVKYPKAEELPKYWEQNRRSLLQFIKQVHR 301
>d2bo9a1 c.56.5.1 (A:4-307) Carboxypeptidase A {Human (Homo sapiens)
[TaxId: 9606]}
Length = 305
Score = 136 bits (343), Expect = 8e-39
Identities = 58/310 (18%), Positives = 97/310 (31%), Gaps = 81/310 (26%)
Query: 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEV 60
+ E+++I ++P+L R +G S E R ++VL+ ST GV +P A +H E
Sbjct: 15 IYHEMDNIAADFPDLARRVKIGHSFENRPMYVLKFSTGKGVRRP---AVWLNAGIHSREW 71
Query: 61 VGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSM---------------------- 98
+ + + A+ + +Y+ D +T +L+ I L+P
Sbjct: 72 ISQATAIWTARKIVSDYQRDPAITSILEKMDIFLLPVANPDGYVYTQTQNRLWRKTRSRN 131
Query: 99 ---NPDGYERAREAVEKW--------------------------------LQDIPFVLSA 123
+ G + R + + F
Sbjct: 132 PGSSCIGADPNRNWNASFAGKGASDNPCSEVYHGPHANSEVEVKSVVDFIQKHGNFKGFI 191
Query: 124 NLHGGSLVANYPYDDNQAMKPQVDSPTPDDSIFKLLASSYANAHKKMYKDPGCPEYPEEN 183
+LH S + YPY + PD +A A A +
Sbjct: 192 DLHSYSQLLMYPYGYS-------VKKAPDAEELDKVARLAAKALASVSG----------T 234
Query: 184 FPGGIVNGAQWYVVSGGMQDYNYIHANTLEITLEL---GCYKF-PPAKDLPSYWEDNLPA 239
Y SG D+ Y + T EL G Y F PA + E+
Sbjct: 235 EYQVGPTCTTVYPASGSSIDWAYDNGIKFAFTFELRDTGTYGFLLPANQIIPTAEETWLG 294
Query: 240 LLSYIEQVHR 249
L + +E V
Sbjct: 295 LKTIMEHVRD 304
>d1obra_ c.56.5.2 (A:) Carboxypeptidase T {Thermoactinomyces
vulgaris [TaxId: 2026]}
Length = 323
Score = 136 bits (343), Expect = 1e-38
Identities = 61/300 (20%), Positives = 109/300 (36%), Gaps = 53/300 (17%)
Query: 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEV 60
M ++ + NYPN+ + +S+G+S E RELW +++S + G PE Y A H E
Sbjct: 15 MVNKINTVASNYPNIVKKFSIGKSYEGRELWAVKISDNVGTD-ENEPEVLYTALHHAREH 73
Query: 61 VGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYERAREAV--EKWLQDIP 118
+ E+ L QNY +D R+T ++ I+++ ++NPDG E + + W ++
Sbjct: 74 LTVEMALYTLDLFTQNYNLDSRITNLVNNREIYIVFNINPDGGEYDISSGSYKSWRKNRQ 133
Query: 119 FVLSANLHGGSLVANYPY-------------------------DDNQAMKPQVDSPTPD- 152
++ G L NY Y + AM+ ++S
Sbjct: 134 PNSGSSYVGTDLNRNYGYKWGCCGGSSGSPSSETYRGRSAFSAPETAAMRDFINSRVVGG 193
Query: 153 DSIFKLLASSYANAHKKMY-KDPGCPEYPEENFPGGI------------------VNGAQ 193
K L + + + +Y + P + +
Sbjct: 194 KQQIKTLITFHTYSELILYPYGYTYTDVPSDMTQDDFNVFKTMANTMAQTNGYTPQQASD 253
Query: 194 WYVVSGGMQDYNYIHANTLEITLELGCYK-----FPPAKDLPSYWEDNLPALLSYIEQVH 248
Y+ G M D+ Y T E+ +PP + + N A+L E+
Sbjct: 254 LYITDGDMTDWAYGQHKIFAFTFEMYPTSYNPGFYPPDEVIGRETSRNKEAVLYVAEKAD 313
>d1ayea1 c.56.5.1 (A:1-309) Carboxypeptidase A {Human (Homo sapiens)
[TaxId: 9606]}
Length = 307
Score = 128 bits (322), Expect = 1e-35
Identities = 54/303 (17%), Positives = 91/303 (30%), Gaps = 69/303 (22%)
Query: 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEV 60
+ E++++ +P L ++G S E R + VL+ ST P A +H E
Sbjct: 17 ISQEMDNLVAEHPGLVSKVNIGSSFENRPMNVLKFST-----GGDKPAIWLDAGIHAREW 71
Query: 61 VGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYERAREAVEKWLQDIPFV 120
V + L A + +Y D +T +L I L+P NPDGY ++ W + V
Sbjct: 72 VTQATALWTANKIVSDYGKDPSITSILDALDIFLLPVTNPDGYVFSQTKNRMWRKTRSKV 131
Query: 121 LSANLHGGSLVANYPYDDNQAMKPQV---------------------------------- 146
+ G N+
Sbjct: 132 SGSLCVGVDPNRNWDAGFGGPGASSNPCSDSYHGPSANSEVEVKSIVDFIKSHGKVKAFI 191
Query: 147 ----------------DSPTPDDSIFKLLASSYANAHKKMYKDPGCPEYPEENFPGGIVN 190
+ D +A A + + ++
Sbjct: 192 ILHSYSQLLMFPYGYKCTKLDDFDELSEVAQKAAQSLRSLHG----------TKYKVGPI 241
Query: 191 GAQWYVVSGGMQDYNYIHANTLEITLEL---GCYKF-PPAKDLPSYWEDNLPALLSYIEQ 246
+ Y SGG D++Y + EL G Y F PA+ + E+ L + +E
Sbjct: 242 CSVIYQASGGSIDWSYDYGIKYSFAFELRDTGRYGFLLPARQILPTAEETWLGLKAIMEH 301
Query: 247 VHR 249
V
Sbjct: 302 VRD 304
>d1m4la_ c.56.5.1 (A:) Carboxypeptidase A {Cow (Bos taurus) [TaxId:
9913]}
Length = 307
Score = 126 bits (318), Expect = 4e-35
Identities = 46/292 (15%), Positives = 88/292 (30%), Gaps = 50/292 (17%)
Query: 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEV 60
+ ++ + +P L +G+S E R ++VL+ ST P +H E
Sbjct: 18 IYDFMDLLVAEHPQLVSKLQIGRSYEGRPIYVLKFSTGG----SNRPAIWIDLGIHSREW 73
Query: 61 VGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYERAREAVEKWLQDIPFV 120
+ + + A+ ++Y D T +L + I L NPDG+ W +
Sbjct: 74 ITQATGVWFAKKFTEDYGQDPSFTAILDSMDIFLEIVTNPDGFAFTHSQNRLWRKTRSVT 133
Query: 121 LSANLHGGSLVANYPY--------DDNQAMKPQVDSPTPDDSIFKLLASSYANAHKKMYK 172
S+ G N+ + + + ++ + + K +
Sbjct: 134 SSSLCVGVDANRNWDAGFGKAGASSSPCSETYHGKYANSEVEVKSIVDFVKDHGNFKAFL 193
Query: 173 D---------------------------------PGCPEYPEENFPGGIVNGAQWYVVSG 199
++ G + Y SG
Sbjct: 194 SIHSYSQLLLYPYGYTTQSIPDKTELNQVAKSAVAALKSLYGTSYKYGSI-ITTIYQASG 252
Query: 200 GMQDYNYIHANTLEITLEL---GCYKF-PPAKDLPSYWEDNLPALLSYIEQV 247
G D++Y T EL G Y F PA + ++ +L+ +E
Sbjct: 253 GSIDWSYNQGIKYSFTFELRDTGRYGFLLPASQIIPTAQETWLGVLTIMEHT 304
>d1z5ra1 c.56.5.1 (A:6-308) Carboxypeptidase B {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 304
Score = 114 bits (285), Expect = 3e-30
Identities = 41/292 (14%), Positives = 75/292 (25%), Gaps = 49/292 (16%)
Query: 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEV 60
++A + +T P+L ++G + +++L++ P P H E
Sbjct: 13 IEAWTKQVTSENPDLISRTAIGTTFLGNNIYLLKVGKPG----PNKPAIFMDCGFHAREW 68
Query: 61 VGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYERAREAVEKWLQDIPFV 120
+ + Y + +T L +++P +N DGY W +
Sbjct: 69 ISHAFCQWFVREAVLTYGYESHMTEFLNKLDFYVLPVLNIDGYIYTWTKNRMWRKTRSTN 128
Query: 121 LSANLHGGSLVANYPYDDNQAMKPQV------DSPTPDDSIFKLLASSYANAHKKMYK-- 172
G N+ + + + + K
Sbjct: 129 AGTTCIGTDPNRNFDAGWCTTGASTDPCDETYCGSAAESEKETKALADFIRNNLSSIKAY 188
Query: 173 ----------------DPGCPEYPEE-----------------NFPGGIVNGAQWYVVSG 199
D PE E Y +G
Sbjct: 189 LTIHSYSQMILYPYSYDYKLPENNAELNNLAKAAVKELATLYGTKYTYGPGATTIYPAAG 248
Query: 200 GMQDYNYIHANTLEITLEL---GCYKF-PPAKDLPSYWEDNLPALLSYIEQV 247
G D+ Y T EL G Y F P + + E+ + A+ V
Sbjct: 249 GSDDWAYDQGIKYSFTFELRDKGRYGFILPESQIQATCEETMLAIKYVTNYV 300
>d2c1ca1 c.56.5.1 (A:7-309) Carboxypeptidase B {Corn earworm
(Helicoverpa zea) [TaxId: 7113]}
Length = 312
Score = 101 bits (253), Expect = 1e-25
Identities = 40/307 (13%), Positives = 88/307 (28%), Gaps = 71/307 (23%)
Query: 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEV 60
+ L++I + YP++ + + +S E R + +++ST P +H E
Sbjct: 12 IDEYLDYIGEKYPDVATVVNAAESFEGRPIKYIKIST-TNFEDENKPVIFIDGGIHAREW 70
Query: 61 VGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYERAREAVEKWL---QDI 117
+ + L ++ + +L+ L+P +NPDGY+ W
Sbjct: 71 ISPPSVTWAIHKLVEDVTEN----DLLEKFDWILLPVVNPDGYKYTFTNERFWRKTRSTN 126
Query: 118 PFVLSANLHGGSLVANYPYD------------------------DNQAMKPQVDS----- 148
LS G N+ + + + ++ +
Sbjct: 127 NNPLSQICRGADGNRNFDFVWNSIGTSNSPCSDIYAGTSAFSEVETRVVRDILHEHLARM 186
Query: 149 ----------------------PTPDDSIFKLLASSYANAHKKMYKDPGCPEYPEENFPG 186
+ + + + A+ + P +
Sbjct: 187 ALYLTMHSFGSMILYPWGHDGSLSQNALGLHTVGVAMASVIQSNALPNFPP------YTV 240
Query: 187 GIVNGAQWYVVSGGMQDYNYIHANTLEITLEL-----GCYKF-PPAKDLPSYWEDNLPAL 240
G Y ++G +DY + L T EL G F P + + + +
Sbjct: 241 GNSALVIGYYIAGSSEDYAHSIGVPLSYTYELPGLSSGWDGFHLPPQYIEQVCRETWEGI 300
Query: 241 LSYIEQV 247
+ +
Sbjct: 301 VVGARRA 307
>d1jqga1 c.56.5.1 (A:1-310) Carboxypeptidase A {Cotton bollworm
(Helicoverpa armigera) [TaxId: 29058]}
Length = 317
Score = 93.3 bits (231), Expect = 1e-22
Identities = 49/306 (16%), Positives = 81/306 (26%), Gaps = 71/306 (23%)
Query: 1 MQAELEHITKNYPNLTRLYSVGQSVEKRELWVLELSTHPGVHKPGVPEFKYVANMHGNEV 60
+ A L+ + K +PN+ + G+S E R + L +ST P + +H E
Sbjct: 18 VDAYLQELAKEFPNVVTVVEGGKSFEGRSIKYLRIST-TNFQDASKPVVMMQSLLHCREW 76
Query: 61 VGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYERAREAVEKWLQDIP-- 118
V L L + D ++ ++P NPDGY W ++
Sbjct: 77 VTLPATLYAIHKLVIDVTESD----LINNIDWIILPVANPDGYVHTFGGDRYWRKNRATG 132
Query: 119 FVLSANLHGGSLVANYPYDDNQAMKPQVDSPT---------------------------- 150
++ G L N+ + A V S T
Sbjct: 133 YMAGNLCMGVDLNRNFGMNWGTASSSSVCSDTFHGRSAFSEPESSVIRDIIAEHRNRMAL 192
Query: 151 ---------------------PDDSIFKLLASSYANAHKKMYKDPGCPEYPEENFPGGIV 189
+ L+ A A ++ +Y N +
Sbjct: 193 YLDIHSFGSMILYGYGNGVLPSNALQLHLIGVQMAQAIDRVKWSSN-KDYIVGNIFHVL- 250
Query: 190 NGAQWYVVSGGMQDYNYIHANTLEITLELGCYK--------FPPAKDLPSYWEDNLPALL 241
Y SGG DY A T EL Y+ + + +
Sbjct: 251 -----YAASGGASDYAMQAAAPFSYTYELPAYRNSVWFDGFLVDPDFIEQAGFETWEGIK 305
Query: 242 SYIEQV 247
Sbjct: 306 VGARAA 311
>d1uwya1 b.3.2.1 (A:297-403) Carboxypeptidase M C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 36.3 bits (83), Expect = 7e-04
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 250 GVAGFVKGREGEGVAEASIAVEGL--GHVVYSAQDGDYWRLLAPGNYTLHVSAP 301
GV G V + G + + V+ + + G+Y+ LL PG+Y ++V+ P
Sbjct: 1 GVKGQVFDQNGNPLPNVIVEVQDRKHICPYRTNKYGEYYLLLLPGSYIINVTVP 54
>d1yw4a1 c.56.5.7 (A:2-332) Succinylglutamate desuccinylase AstE
{Chromobacterium violaceum [TaxId: 536]}
Length = 331
Score = 31.9 bits (72), Expect = 0.087
Identities = 15/92 (16%), Positives = 22/92 (23%), Gaps = 19/92 (20%)
Query: 31 WVLELSTHPGVHKPGVPEFK----------YVANMHGNEVVGRELLLLLAQYLCQNYKID 80
W L PG E +HGNE E++ + +
Sbjct: 20 WPLPGGLAARWLAPGCVELNGDARGADSVLLSCGVHGNETAPIEVVDGM---------LT 70
Query: 81 DRVTRMLQTTRIHLMPSMNPDGYERAREAVEK 112
D L L+ N D +
Sbjct: 71 DIAAGQLALNCRLLVMFANLDAIRQGVRYGNY 102
>d2gu2a1 c.56.5.7 (A:4-310) Aspartoacylase AspA {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 307
Score = 31.1 bits (70), Expect = 0.15
Identities = 10/64 (15%), Positives = 18/64 (28%), Gaps = 10/64 (15%)
Query: 52 VANMHGNEVVGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYERAREAVE 111
HGNE+ G L+ + + + NP E+ ++
Sbjct: 13 FGGTHGNELTGVFLVTHWLKNGA----------EVHRAGLEVKPFITNPRAVEKCTRYID 62
Query: 112 KWLQ 115
L
Sbjct: 63 CDLN 66
>d2g9da1 c.56.5.7 (A:3-342) Succinylglutamate desuccinylase AstE
{Vibrio cholerae [TaxId: 666]}
Length = 340
Score = 31.2 bits (70), Expect = 0.16
Identities = 16/81 (19%), Positives = 23/81 (28%), Gaps = 11/81 (13%)
Query: 32 VLELSTHPGVHKPGVPEFKYVANMHGNEVVGRELLLLLAQYLCQNYKIDDRVTRMLQTTR 91
VLE+ P +HG+E ELL D V+
Sbjct: 39 VLEVI--PAQTDAATKNMVISCGIHGDETAPMELLDKWID---------DIVSGFQPVAE 87
Query: 92 IHLMPSMNPDGYERAREAVEK 112
L +P R +E+
Sbjct: 88 RCLFIMAHPQATVRHVRFIEQ 108
>d2bcoa1 c.56.5.7 (A:4-342) Succinylglutamate desuccinylase AstE
{Vibrio parahaemolyticus [TaxId: 670]}
Length = 339
Score = 30.7 bits (69), Expect = 0.17
Identities = 9/61 (14%), Positives = 20/61 (32%), Gaps = 9/61 (14%)
Query: 52 VANMHGNEVVGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYERAREAVE 111
+HG+E EL+ + + D + + L +P+ +E
Sbjct: 56 SCGIHGDETAPMELVDSIIK---------DIESGFQKVDARCLFIIAHPESTLAHTRFLE 106
Query: 112 K 112
+
Sbjct: 107 E 107
>d1yw6a1 c.56.5.7 (A:1-322) Succinylglutamate desuccinylase AstE
{Escherichia coli [TaxId: 562]}
Length = 322
Score = 30.0 bits (67), Expect = 0.33
Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 9/61 (14%)
Query: 52 VANMHGNEVVGRELLLLLAQYLCQNYKIDDRVTRMLQTTRIHLMPSMNPDGYERAREAVE 111
A +HGNE E+L L + + L+ NP ++ +
Sbjct: 49 SAGIHGNETAPVEMLDAL---------LGAISHGEIPLRWRLLVILGNPPALKQGKRYCH 99
Query: 112 K 112
Sbjct: 100 S 100
>d2c42a1 c.36.1.8 (A:2-258) Pyruvate-ferredoxin oxidoreductase,
PFOR, domain I {Desulfovibrio africanus [TaxId: 873]}
Length = 257
Score = 27.7 bits (61), Expect = 1.7
Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 73 LCQNYKIDDRVTRMLQTTRIHLM-PSMNPDGYERAREAVEKWLQDIPFVL 121
L + + + + H+ + NPD Y + REA + +P ++
Sbjct: 193 LVNQKALAEFRAKSMNPEHPHVRGTAQNPDIYFQGREAANPYYLKVPGIV 242
>d1qxoa_ d.258.1.1 (A:) Chorismate synthase, AroC {Streptococcus
pneumoniae [TaxId: 1313]}
Length = 388
Score = 27.6 bits (61), Expect = 2.1
Identities = 10/55 (18%), Positives = 15/55 (27%)
Query: 203 DYNYIHANTLEITLELGCYKFPPAKDLPSYWEDNLPALLSYIEQVHRGVAGFVKG 257
D +T+ +E P W+ L A L+ G G
Sbjct: 205 DQIKRDGDTIGGVVETVVGGVPVGLGSYVQWDRKLDARLAQAVVSINAFKGVEFG 259
>d1q1la_ d.258.1.1 (A:) Chorismate synthase, AroC {Aquifex aeolicus
[TaxId: 63363]}
Length = 397
Score = 27.6 bits (61), Expect = 2.1
Identities = 11/78 (14%), Positives = 23/78 (29%), Gaps = 3/78 (3%)
Query: 210 NTLEITLELGCYKFPPAKDLPSYWEDNLPALLSYIEQVHRGVAGFVKGREGEGVAEASIA 269
+L E+ PP W+ + ++ + + G G E
Sbjct: 221 ESLGGVFEVFALNVPPGLGSHIQWDRRIDGRIAQAMMSIQAIKGVEIGLGFEAARRFGSQ 280
Query: 270 VEGLGHVVYSAQDGDYWR 287
V + ++ Y+R
Sbjct: 281 V---HDEIGWSEGKGYFR 295
>d1dfca4 b.42.5.1 (A:1383-1493) Fascin {Human (Homo sapiens) [TaxId:
9606]}
Length = 111
Score = 26.3 bits (58), Expect = 2.5
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Query: 247 VHRGVAGFVKGREGEGVAEASIAVEGLGHVVYS-------AQDGDYWRL 288
V RG GF+ R+ G +A+ + + + ++ G YW +
Sbjct: 5 VFRGEHGFIGCRKVTGTLDANRSSYDVFQLEFNDGAYNIKDSTGKYWTV 53
>d1ib8a2 d.52.4.1 (A:1-90) Hypothetical protein SP14.3 (SP0552)
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 90
Score = 24.3 bits (53), Expect = 8.9
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 291 PGNYTLHVSAPGED 304
P Y L +++PG +
Sbjct: 77 PEQYFLEITSPGLE 90
>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium
symbiosum [TaxId: 1512]}
Length = 255
Score = 25.5 bits (55), Expect = 9.1
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 249 RGVAGFVK---GREGEGVAEASIAVEGLGHVVYSA 280
G +V+ E + + ++A+ G G+V + A
Sbjct: 17 YGSVYYVEAVMKHENDTLVGKTVALAGFGNVAWGA 51
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.136 0.418
Gapped
Lambda K H
0.267 0.0595 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,194,244
Number of extensions: 57430
Number of successful extensions: 187
Number of sequences better than 10.0: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 35
Length of query: 305
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 220
Effective length of database: 1,240,546
Effective search space: 272920120
Effective search space used: 272920120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.5 bits)