RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17405
(241 letters)
>3mn8_A LP15968P; catalytic domain of alpha/beta-hydrolase fold,
C-terminal, A transthyretin-like domain, hydrolase; HET:
NAG GEM; 2.70A {Drosophila melanogaster}
Length = 435
Score = 220 bits (561), Expect = 4e-70
Identities = 88/220 (40%), Positives = 138/220 (62%), Gaps = 12/220 (5%)
Query: 20 SLCFLLCWVGCT--------TPVLVNNDPEPFLENPHYLSFDELTKFLVAAAQQNPSKVK 71
+L L +G + E FL+ PHY S ++L + P++ K
Sbjct: 3 TLGLLFASIGIAVLAMGVPHCRGYTIKEDESFLQQPHYASQEQLEDLFAGLEKAYPNQAK 62
Query: 72 LHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHGDEVVGYELMNYLIEYLIIN 131
+H +G+S++ R+L ALQISRN S RNLL P KY+AN+HGDE VG +L+ Y+ +YL+ N
Sbjct: 63 VHFLGRSLEGRNLLALQISRNTRS-RNLLTPPVKYIANMHGDETVGRQLLVYMAQYLLGN 121
Query: 132 DGTDERVTRLINTTDIFIIPSLNPDGYSAAKEGSCNSLASFVGRNNANGVDLNRNFPDQF 191
+ +L+N+TDI+++P++NPDGY+ ++EG+C SL ++VGR NA +DLNR+FPD+
Sbjct: 122 HERISDLGQLVNSTDIYLVPTMNPDGYALSQEGNCESLPNYVGRGNAANIDLNRDFPDRL 181
Query: 192 DSSSERREQPLNVKKLEPETLAMISFIKNNPFVLSGNLHG 231
+ S + + + +PET A++++I + PFVLS N HG
Sbjct: 182 EQSHVHQLRAQSR---QPETAALVNWIVSKPFVLSANFHG 218
>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent
protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta
specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A*
Length = 380
Score = 203 bits (518), Expect = 4e-64
Identities = 86/184 (46%), Positives = 117/184 (63%), Gaps = 13/184 (7%)
Query: 48 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYV 107
+ F ++ FL A + PS +L+S+GKSV+ R+L+ ++IS N +P FKY+
Sbjct: 9 RHHHFSDMEIFLRRYANEYPSITRLYSVGKSVELRELYVMEISDNPGI-HEAGEPEFKYI 67
Query: 108 ANIHGDEVVGYELMNYLIEYLIINDGTDERVTRLINTTDIFIIPSLNPDGYSAAKEGSCN 167
N+HG+EVVG EL+ LIEYL N GTD VT L+ +T I I+PS+NPDGY ++EG
Sbjct: 68 GNMHGNEVVGRELLLNLIEYLCKNFGTDPEVTDLVQSTRIHIMPSMNPDGYEKSQEGDRG 127
Query: 168 SLASFVGRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLSG 227
VGRNN+N DLNRNFPDQF ++ +PETLA++S++K PFVLS
Sbjct: 128 GT---VGRNNSNNYDLNRNFPDQFFQVTDPP---------QPETLAVMSWLKTYPFVLSA 175
Query: 228 NLHG 231
NLHG
Sbjct: 176 NLHG 179
>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc
peptidase, transthyretin-like domain, processing,
peptide modification, hydrolase; HET: NAG; 2.10A {Homo
sapiens}
Length = 439
Score = 204 bits (520), Expect = 6e-64
Identities = 77/194 (39%), Positives = 107/194 (55%), Gaps = 12/194 (6%)
Query: 49 YLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVA 108
+ +D+L + L + P +++SIG+SV+ R L+ L+ S + L+P KYV
Sbjct: 6 HHRYDDLVRTLYKVQNECPGITRVYSIGRSVEGRHLYVLEFSDHPGI-HEPLEPEVKYVG 64
Query: 109 NIHGDEVVGYELMNYLIEYLIIN-DGTDERVTRLINTTDIFIIPSLNPDGYSAAKEGSCN 167
N+HG+E +G ELM L E+L ++R+ +LI T I I+PS+NPDGY A N
Sbjct: 65 NMHGNEALGRELMLQLSEFLCEEFRNRNQRIVQLIQDTRIHILPSMNPDGYEVAAAQGPN 124
Query: 168 SLASFVGRNNANGVDLNRNFPDQFDS-------SSERREQPL---NVKKLEPETLAMISF 217
VGRNNANGVDLNRNFPD PL ++EPET A+I +
Sbjct: 125 KPGYLVGRNNANGVDLNRNFPDLNTYIYYNEKYGGPNHHLPLPDNWKSQVEPETRAVIRW 184
Query: 218 IKNNPFVLSGNLHG 231
+ + FVLS NLHG
Sbjct: 185 MHSFNFVLSANLHG 198
>1uwy_A Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease,
zinc, lipoprotein, hydrolase, structural proteomics in
europe, spine; HET: NAG; 3.0A {Homo sapiens} SCOP:
b.3.2.1 c.56.5.1
Length = 426
Score = 190 bits (485), Expect = 7e-59
Identities = 84/184 (45%), Positives = 112/184 (60%), Gaps = 13/184 (7%)
Query: 48 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYV 107
+Y + + FL AQ S LHSIGKSV+ R+LW L + R + P FKYV
Sbjct: 4 NYHRQEGMEAFLKTVAQNYSSVTHLHSIGKSVKGRNLWVLVVGRF-PKEHRIGIPEFKYV 62
Query: 108 ANIHGDEVVGYELMNYLIEYLIINDGTDERVTRLINTTDIFIIPSLNPDGYSAAKEGSCN 167
AN+HGDE VG EL+ +LI+YL+ +DG D +T LIN+T I I+PS+NPDG+ A K+ C
Sbjct: 63 ANMHGDETVGRELLLHLIDYLVTSDGKDPEITNLINSTRIHIMPSMNPDGFEAVKKPDCY 122
Query: 168 SLASFVGRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLSG 227
GR N N DLNRNFPD F+ ++ R +PET+A++ ++K FVLS
Sbjct: 123 YSI---GRENYNQYDLNRNFPDAFEYNNVSR---------QPETVAVMKWLKTETFVLSA 170
Query: 228 NLHG 231
NLHG
Sbjct: 171 NLHG 174
>3prt_A Carboxypeptidase T; hydrolase; 1.66A {Thermoactinomyces vulgaris}
PDB: 1obr_A 3qnv_A
Length = 323
Score = 173 bits (441), Expect = 3e-53
Identities = 56/204 (27%), Positives = 86/204 (42%), Gaps = 26/204 (12%)
Query: 48 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYV 107
Y +++E+ + A P+ VK SIGKS + R+LWA++IS NV + N +P Y
Sbjct: 8 GYHNYNEMVNKINTVASNYPNIVKKFSIGKSYEGRELWAVKISDNVGTDEN--EPEVLYT 65
Query: 108 ANIHGDEVVGYELMNYLIEYLIINDGTDERVTRLINTTDIFIIPSLNPDGYSAAKEGSCN 167
A H E + E+ Y ++ N D R+T L+N +I+I+ ++NPDG
Sbjct: 66 ALHHAREHLTVEMALYTLDLFTQNYNLDSRITNLVNNREIYIVFNINPDGGEYDISSGSY 125
Query: 168 SL----ASFVGRNNANGVDLNRNFPDQFDSS--------SE--RREQPLNVKKLEPETLA 213
++ G DLNRN+ ++ SE R + PET A
Sbjct: 126 KSWRKNRQPNSGSSYVGTDLNRNYGYKWGCCGGSSGSPSSETYRGRSAFS----APETAA 181
Query: 214 MISFIKN------NPFVLSGNLHG 231
M FI + H
Sbjct: 182 MRDFINSRVVGGKQQIKTLITFHT 205
>1jqg_A Carboxypeptidase A; Pro-protein, hydrolase; 2.50A {Helicoverpa
armigera} SCOP: c.56.5.1 d.58.3.1
Length = 433
Score = 121 bits (305), Expect = 2e-32
Identities = 49/186 (26%), Positives = 75/186 (40%), Gaps = 22/186 (11%)
Query: 48 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYV 107
S++E+ +L A++ P+ V + GKS + R + L+IS + KP+
Sbjct: 120 KIHSYEEVDAYLQELAKEFPNVVTVVEGGKSFEGRSIKYLRISTTNFQDAS--KPVVMMQ 177
Query: 108 ANIHGDEVVGYELMNYLIEYLIINDGTDERVTRLINTTDIFIIPSLNPDGYSAAKEGSC- 166
+ +H E V Y I L+ D + LIN D I+P NPDGY G
Sbjct: 178 SLLHCREWVTLPATLYAIHKLV----IDVTESDLINNIDWIILPVANPDGYVHTFGGDRY 233
Query: 167 ---NSLASFVGRNNANGVDLNRNFPDQF------DSSSE--RREQPLNVKKLEPETLAMI 215
N ++ N GVDLNRNF + S+ + EPE+ +
Sbjct: 234 WRKNRATGYMAGNLCMGVDLNRNFGMNWGTASSSSVCSDTFHGRSAFS----EPESSVIR 289
Query: 216 SFIKNN 221
I +
Sbjct: 290 DIIAEH 295
>2bo9_A Carboxypeptidase A4; metallocarboxypeptidase, X-RAY endogenous
protein inhibitor, metalloprotease carboxypeptidase,
hydrolase; HET: NAG; 1.6A {Homo sapiens} SCOP: c.56.5.1
PDB: 4a94_A 2pcu_A*
Length = 308
Score = 118 bits (297), Expect = 4e-32
Identities = 41/192 (21%), Positives = 71/192 (36%), Gaps = 31/192 (16%)
Query: 48 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYV 107
Y S + + + A P + IG S +NR ++ L+ S G +P
Sbjct: 9 AYHSLEAIYHEMDNIAADFPDLARRVKIGHSFENRPMYVLKFSTG--KGVR--RPAVWLN 64
Query: 108 ANIHGDEVVGYELMNYLIEYLIINDGTDERVTRLINTTDIFIIPSLNPDGYSAAKEGSCN 167
A IH E + + ++ + D +T ++ DIF++P NPDGY + +
Sbjct: 65 AGIHSREWISQATAIWTARKIVSDYQRDPAITSILEKMDIFLLPVANPDGYVYTQTQNRL 124
Query: 168 SLASFVGRNNAN--------GVDLNRNFPDQF-------DSSSE--RREQPLNVKKLEPE 210
R + G D NRN+ F + SE + E E
Sbjct: 125 W------RKTRSRNPGSSCIGADPNRNWNASFAGKGASDNPCSEVYHGPHANS----EVE 174
Query: 211 TLAMISFIKNNP 222
+++ FI+ +
Sbjct: 175 VKSVVDFIQKHG 186
>2c1c_A Carboxypeptidase B; insect, metalloprotease, insensitive, plant
inhibitors, hydrolase; 2.3A {Helicoverpa zea} SCOP:
c.56.5.1
Length = 312
Score = 118 bits (297), Expect = 5e-32
Identities = 35/188 (18%), Positives = 65/188 (34%), Gaps = 24/188 (12%)
Query: 48 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYV 107
+Y + + ++L ++ P + + +S + R + ++IS N KP+
Sbjct: 5 NYQELEVIDEYLDYIGEKYPDVATVVNAAESFEGRPIKYIKISTTNFEDEN--KPVIFID 62
Query: 108 ANIHGDEVVGYELMNYLIEYLIINDGTDERVTRLINTTDIFIIPSLNPDGYSAAKEGSCN 167
IH E + + + I L+ D L+ D ++P +NPDGY
Sbjct: 63 GGIHAREWISPPSVTWAIHKLV----EDVTENDLLEKFDWILLPVVNPDGYKYTFTNERF 118
Query: 168 -----SLASFVGRNNANGVDLNRNFPDQF-------DSSSE--RREQPLNVKKLEPETLA 213
S + G D NRNF + S+ + E ET
Sbjct: 119 WRKTRSTNNNPLSQICRGADGNRNFDFVWNSIGTSNSPCSDIYAGTSAFS----EVETRV 174
Query: 214 MISFIKNN 221
+ + +
Sbjct: 175 VRDILHEH 182
>1z5r_A Procarboxypeptidase B; exopeptidase, hydrolase; 1.40A {Sus scrofa}
SCOP: c.56.5.1 PDB: 1zg7_A* 1zg8_A* 1zg9_A* 2jew_A*
2piy_A* 2piz_A* 2pj0_A* 2pj1_A* 2pj2_A* 2pj3_A* 2pj4_A*
2pj5_A* 2pj6_A* 2pj7_A* 2pj8_A* 2pj9_A* 2pja_A* 2pjb_A*
2pjc_A* 1zli_A ...
Length = 306
Score = 117 bits (296), Expect = 5e-32
Identities = 38/187 (20%), Positives = 71/187 (37%), Gaps = 24/187 (12%)
Query: 48 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYV 107
Y +++ + + +NP + +IG + +++ L++ + + KP
Sbjct: 8 KYNNWETIEAWTKQVTSENPDLISRTAIGTTFLGNNIYLLKVGKPGPN-----KPAIFMD 62
Query: 108 ANIHGDEVVGYELMNYLIEYLIINDGTDERVTRLINTTDIFIIPSLNPDGYSAAKEGSCN 167
H E + + + + ++ G + +T +N D +++P LN DGY N
Sbjct: 63 CGFHAREWISHAFCQWFVREAVLTYGYESHMTEFLNKLDFYVLPVLNIDGYIYTWTK--N 120
Query: 168 SL----ASFVGRNNANGVDLNRNFPDQF-------DSSSE--RREQPLNVKKLEPETLAM 214
+ S G D NRNF + D E + E ET A+
Sbjct: 121 RMWRKTRSTNAGTTCIGTDPNRNFDAGWCTTGASTDPCDETYCGSAAES----EKETKAL 176
Query: 215 ISFIKNN 221
FI+NN
Sbjct: 177 ADFIRNN 183
>1dtd_A Carboxypeptidase A2; carboxypeptidase A2, leech carboxypeptidase
inhibitor, hydrolase/hydrolase inhibitor complex; HET:
GLU; 1.65A {Homo sapiens} SCOP: c.56.5.1
Length = 303
Score = 117 bits (295), Expect = 7e-32
Identities = 46/195 (23%), Positives = 81/195 (41%), Gaps = 34/195 (17%)
Query: 48 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYV 107
Y + +E+++ + ++P V +IG S +NR + L+ S KP
Sbjct: 5 AYHTLEEISQEMDNLVAEHPGLVSKVNIGSSFENRPMNVLKFSTGGD------KPAIWLD 58
Query: 108 ANIHGDEVVGYELMNYLIEYLIINDGTDERVTRLINTTDIFIIPSLNPDGYSAAKEGSCN 167
A IH E V + ++ + G D +T +++ DIF++P NPDGY ++ N
Sbjct: 59 AGIHAREWVTQATALWTANKIVSDYGKDPSITSILDALDIFLLPVTNPDGYVFSQTK--N 116
Query: 168 SLASFVGRNNAN---------GVDLNRNFPDQF-------DSSSE--RREQPLNVKKLEP 209
+ R + GVD NRN+ F + S+ + E
Sbjct: 117 RM----WRKTRSKVSAGSLCVGVDPNRNWDAGFGGPGASSNPCSDSYHGPSANS----EV 168
Query: 210 ETLAMISFIKNNPFV 224
E +++ FIK++ V
Sbjct: 169 EVKSIVDFIKSHGKV 183
>1aye_A PCPA2, procarboxypeptidase A2; serine protease, zymogen, hydrolase;
1.80A {Homo sapiens} SCOP: c.56.5.1 d.58.3.1 PDB: 1o6x_A
Length = 401
Score = 118 bits (297), Expect = 2e-31
Identities = 44/188 (23%), Positives = 81/188 (43%), Gaps = 21/188 (11%)
Query: 48 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYV 107
Y + +E+++ + ++P V +IG S +NR + L+ S KP
Sbjct: 104 AYHTLEEISQEMDNLVAEHPGLVSKVNIGSSFENRPMNVLKFSTGGD------KPAIWLD 157
Query: 108 ANIHGDEVVGYELMNYLIEYLIINDGTDERVTRLINTTDIFIIPSLNPDGYSAAKEGSCN 167
A IH E V + ++ + G D +T +++ DIF++P NPDGY ++ +
Sbjct: 158 AGIHAREWVTQATALWTANKIVSDYGKDPSITSILDALDIFLLPVTNPDGYVFSQTKNRM 217
Query: 168 SLASFVGRNNAN--GVDLNRNFPDQF-------DSSSE--RREQPLNVKKLEPETLAMIS 216
+ + + GVD NRN+ F + S+ + E E +++
Sbjct: 218 WRKTRSKVSGSLCVGVDPNRNWDAGFGGPGASSNPCSDSYHGPSANS----EVEVKSIVD 273
Query: 217 FIKNNPFV 224
FIK++ V
Sbjct: 274 FIKSHGKV 281
>1m4l_A Carboxypeptidase A; metalloproteinase, metalloexoproteinase,
hydrolase; 1.25A {Bos taurus} SCOP: c.56.5.1 PDB: 1cpx_A
1arl_A 1f57_A 2rfh_A* 3i1u_A* 1arm_A 1ell_P 1elm_P
1ee3_P 1zlh_A 2abz_A 3hlp_A 3huv_A 1yme_A* 3fvl_A*
3fx6_A* 2ctc_A* 1hdq_A 2ctb_A* 3kgq_A* ...
Length = 307
Score = 116 bits (292), Expect = 2e-31
Identities = 42/197 (21%), Positives = 79/197 (40%), Gaps = 25/197 (12%)
Query: 48 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYV 107
Y + DE+ F+ ++P V IG+S + R ++ L+ S ++ +P
Sbjct: 11 TYHTLDEIYDFMDLLVAEHPQLVSKLQIGRSYEGRPIYVLKFSTGGSN-----RPAIWID 65
Query: 108 ANIHGDEVVGYELMNYLIEYLIINDGTDERVTRLINTTDIFIIPSLNPDGYSAAKEGS-- 165
IH E + + + + G D T ++++ DIF+ NPDG++ +
Sbjct: 66 LGIHSREWITQATGVWFAKKFTEDYGQDPSFTAILDSMDIFLEIVTNPDGFAFTHSQNRL 125
Query: 166 --CNSLASFVGRNNANGVDLNRNFPDQF-------DSSSE--RREQPLNVKKLEPETLAM 214
S + GVD NRN+ F SE + + E E ++
Sbjct: 126 WRKT--RSVTSSSLCVGVDANRNWDAGFGKAGASSSPCSETYHGKYANS----EVEVKSI 179
Query: 215 ISFIKNNP-FVLSGNLH 230
+ F+K++ F ++H
Sbjct: 180 VDFVKDHGNFKAFLSIH 196
>3d4u_A Tafia, carboxypeptidase B2; protease-inhibitor complex,
glycoprotein, hydrolase, metal-binding, metalloprotease,
protease, secret zymogen; 1.70A {Bos taurus} PDB: 3lms_A
Length = 309
Score = 115 bits (289), Expect = 5e-31
Identities = 44/188 (23%), Positives = 75/188 (39%), Gaps = 24/188 (12%)
Query: 48 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYV 107
Y S +E+ ++ ++ P V+ IG S + L+ L++S+ K
Sbjct: 8 QYHSLNEIYSWIEVMTERYPDMVEKIHIGSSYEKYPLYVLKVSKKEQRA----KNAMWID 63
Query: 108 ANIHGDEVVGYELMNYLIEYLIINDGTDERVTRLINTTDIFIIPSLNPDGYSAAKEGSCN 167
IH E + + + + G ++ T L+ D +I+P +N DGY + +
Sbjct: 64 CGIHAREWISPAFCLWFVGSVTYYYGKEKMHTNLLKHMDFYIMPVVNVDGYDYTWKK--D 121
Query: 168 SL----ASFVGRNNANGVDLNRNFPDQF--------DSSSE--RREQPLNVKKLEPETLA 213
+ S +N G DLNRNF + S SE P + EPE A
Sbjct: 122 RMWRKNRSLHEKNACVGTDLNRNFASKHWCGEGASSSSCSEIYCGTYPES----EPEVKA 177
Query: 214 MISFIKNN 221
+ F++ N
Sbjct: 178 VADFLRRN 185
>1kwm_A Procarboxypeptidase B; hydrolase; HET: CIT; 1.60A {Homo sapiens}
SCOP: c.56.5.1 d.58.3.1 PDB: 3glj_A 1nsa_A 1pba_A
Length = 402
Score = 114 bits (287), Expect = 5e-30
Identities = 40/191 (20%), Positives = 71/191 (37%), Gaps = 32/191 (16%)
Query: 48 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYV 107
Y ++ + + A +NP+ + IG + + R ++ L++ + + KP
Sbjct: 103 KYNKWETIEAWTQQVATENPALISRSVIGTTFEGRAIYLLKVGKAGQN-----KPAIFMD 157
Query: 108 ANIHGDEVVGYELMNYLIEYLIINDGTDERVTRLINTTDIFIIPSLNPDGYSAAKEGSCN 167
H E + + + + G + +VT L+N D +++P LN DGY S
Sbjct: 158 CGFHAREWISPAFCQWFVREAVRTYGREIQVTELLNKLDFYVLPVLNIDGYIYTWTKSRF 217
Query: 168 SLASFVGRNNAN--------GVDLNRNFPDQF-------DSSSE--RREQPLNVKKLEPE 210
R + G D NRNF + + E + E E
Sbjct: 218 ------WRKTRSTHTGSSCIGTDPNRNFDAGWCEIGASRNPCDETYCGPAAES----EKE 267
Query: 211 TLAMISFIKNN 221
T A+ FI+N
Sbjct: 268 TKALADFIRNK 278
>1pca_A Procarboxypeptidase A PCPA; hydrolase(C-terminal peptidase); HET:
CIT; 2.00A {Sus scrofa} SCOP: d.58.3.1 PDB: 1pyt_A
Length = 403
Score = 114 bits (286), Expect = 8e-30
Identities = 41/192 (21%), Positives = 78/192 (40%), Gaps = 32/192 (16%)
Query: 48 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYV 107
Y + +E+ F+ ++P+ V IG+S + R ++ L+ S ++ +P
Sbjct: 106 TYHTLEEIYDFMDILVAEHPALVSKLQIGRSYEGRPIYVLKFSTGGSN-----RPAIWID 160
Query: 108 ANIHGDEVVGYELMNYLIEYLIINDGTDERVTRLINTTDIFIIPSLNPDGYSAAKEG--- 164
+ IH E + + + + N G + T ++++ DIF+ NP+G++
Sbjct: 161 SGIHSREWITQASGVWFAKKITENYGQNSSFTAILDSMDIFLEIVTNPNGFAFTHSDNRL 220
Query: 165 -----SCNSLASFVGRNNANGVDLNRNFPDQF-------DSSSE--RREQPLNVKKLEPE 210
S S + V G D NRN+ F +E + P + E E
Sbjct: 221 WRKTRSKASGSLCV------GSDSNRNWDAGFGGAGASSSPCAETYHGKYPNS----EVE 270
Query: 211 TLAMISFIKNNP 222
++ F+KNN
Sbjct: 271 VKSITDFVKNNG 282
>3dgv_A TAFI, carboxypeptidase B2; blood coagulation, fibrinolysis, protein
S glycoprotein, hydrolase, metal-binding,
metalloprotease, PR secreted, zymogen; HET: NAG NDG FUL
BMA; 2.50A {Bos taurus} PDB: 3osl_A 3d68_A* 3d66_A*
3d67_A*
Length = 401
Score = 110 bits (277), Expect = 1e-28
Identities = 42/188 (22%), Positives = 73/188 (38%), Gaps = 24/188 (12%)
Query: 48 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYV 107
Y S +E+ ++ ++ P V+ IG S + L+ L++S+ K
Sbjct: 100 QYHSLNEIYSWIEVMTERYPDMVEKIHIGSSYEKYPLYVLKVSKKEQRA----KNAMWID 155
Query: 108 ANIHGDEVVGYELMNYLIEYLIINDGTDERVTRLINTTDIFIIPSLNPDGYSAAKEGSCN 167
IH E + + + + G ++ T L+ D +I+P +N DGY + +
Sbjct: 156 CGIHAREWISPAFCLWFVGSVTYYYGKEKMHTNLLKHMDFYIMPVVNVDGYDYTWKK--D 213
Query: 168 SLASFVGRNNAN----GVDLNRNFPDQF--------DSSSE--RREQPLNVKKLEPETLA 213
+ + G DLNRNF + S SE P + EPE A
Sbjct: 214 RMWRKNRSLHEKNACVGTDLNRNFASKHWCGEGASSSSCSEIYCGTYPES----EPEVKA 269
Query: 214 MISFIKNN 221
+ F++ N
Sbjct: 270 VADFLRRN 277
>2boa_A Carboxypeptidase A4; metalloprocarboxypeptidase, X-RAY zymogen,
metalloprotease, exopropeptidase, hydrolase; HET: NAG;
2.20A {Homo sapiens} SCOP: c.56.5.1 d.58.3.1
Length = 404
Score = 109 bits (275), Expect = 3e-28
Identities = 41/191 (21%), Positives = 74/191 (38%), Gaps = 31/191 (16%)
Query: 48 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYV 107
Y S + + + A P + IG S +NR ++ L+ S +G+ + +P
Sbjct: 105 AYHSLEAIYHEMDNIAADFPDLARRVKIGHSFENRPMYVLKFS----TGKGVRRPAVWLN 160
Query: 108 ANIHGDEVVGYELMNYLIEYLIINDGTDERVTRLINTTDIFIIPSLNPDGYSAAKEGSCN 167
A IH E + + ++ + D +T ++ DIF++P NPDGY + +
Sbjct: 161 AGIHSREWISQATAIWTARKIVSDYQRDPAITSILEKMDIFLLPVANPDGYVYTQTQNRL 220
Query: 168 SLASFVGRNNAN--------GVDLNRNFPDQF-------DSSSE--RREQPLNVKKLEPE 210
R + G D NRN+ F + SE + E E
Sbjct: 221 W------RKTRSRNPGSSCIGADPNRNWNASFAGKGASDNPCSEVYHGPHANS----EVE 270
Query: 211 TLAMISFIKNN 221
+++ FI+ +
Sbjct: 271 VKSVVDFIQKH 281
>4a37_A Metallo-carboxypeptidase; metallo-protease, hydrolase; 1.60A
{Pseudomonas aeruginosa} PDB: 4a38_A 4a39_A*
Length = 388
Score = 103 bits (258), Expect = 4e-26
Identities = 42/176 (23%), Positives = 68/176 (38%), Gaps = 31/176 (17%)
Query: 64 QQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHGDEVVGYELMNY 123
V+ ++G SVQ RD+ L++ R+ S +A H E + M
Sbjct: 138 ALGIEGVERLAVGTSVQGRDIELLRVRRHPDS-----HLKLWVIAQQHPGEHMAEWFMEG 192
Query: 124 LIEYLIINDGTDERVTRLINTTDIFIIPSLNPDGYSAAKEGSCNSLASFVGRNNANGVDL 183
LIE L D + RL+ D++++P++NPDG R NA G DL
Sbjct: 193 LIERL--QRPDDTEMQRLLEKADLYLVPNMNPDGAFHGNL-----------RTNAAGQDL 239
Query: 184 NRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLSGNLHGKKPNKVKF 239
NR + + + PE + +K + L ++HG + F
Sbjct: 240 NRAWLEPS-------------AERSPEVWFVQQEMKRHGVDLFLDIHGDEEIPHVF 282
>3k2k_A Putative carboxypeptidase; structural genomics, joint center
structural genomics, JCSG, protein structure initiative;
2.49A {Burkholderia mallei atcc 23344}
Length = 403
Score = 101 bits (253), Expect = 2e-25
Identities = 38/195 (19%), Positives = 72/195 (36%), Gaps = 30/195 (15%)
Query: 48 HYLSFDELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYV 107
S + ++FL A Q + + +G++V+ R + + + +G K +
Sbjct: 131 EPYSEERHSEFL--GAVQQMPQASVVELGRTVEGRPMSLVVLGTPDEAGAA--KKKVWII 186
Query: 108 ANIHGDEVVGYELMNYLIEYLI--INDGTDERVTRLINTTDIFIIPSLNPDGYSAAKEGS 165
A H E + + L++ L+ + D +L + +I+P++NPDG
Sbjct: 187 ARQHPGESMAEWFIEGLVKRLVGWGDWSGDPVARKLYDHATFYIVPNMNPDGSVHGNL-- 244
Query: 166 CNSLASFVGRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVL 225
R NA G +LNR + + + PE L + I L
Sbjct: 245 ---------RTNAAGANLNREWMEPD-------------AERSPEVLVVRDAIHAIGCDL 282
Query: 226 SGNLHGKKPNKVKFP 240
++HG + F
Sbjct: 283 FFDIHGDEDLPYVFA 297
>3l2n_A Peptidase M14, carboxypeptidase A; putative carboxypeptidase A,
structural genomics, joint CENT structural genomics,
JCSG; 2.39A {Shewanella denitrificans}
Length = 395
Score = 88.3 bits (218), Expect = 2e-20
Identities = 33/176 (18%), Positives = 65/176 (36%), Gaps = 31/176 (17%)
Query: 64 QQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHGDEVVGYELMNY 123
Q V +G ++ RD+ +++ + S +++ A H E + L+
Sbjct: 143 VQLHPLVSTEHLGLTLDGRDMTLVKVGDDDPSKKSIW-----ITARQHPGETMAEWLVEG 197
Query: 124 LIEYLIINDGTDERVTRLINTTDIFIIPSLNPDGYSAAKEGSCNSLASFVGRNNANGVDL 183
L+ L+ D L++ + +I+P++NPDG R NA G +L
Sbjct: 198 LLNQLL--DNDCPTSKALLDKANFYIVPNMNPDGSVRGHL-----------RTNAVGANL 244
Query: 184 NRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLSGNLHGKKPNKVKF 239
NR + + PE +++ + L ++HG + F
Sbjct: 245 NREWQT-------------PSLERSPEVYYVVNKMHETGVDLFYDVHGDEGLPYVF 287
>3b2y_A Metallopeptidase containing CO-catalytic metalloa site;
metallopeptidase containing CO-catalytic metalloactive
site; 1.74A {Shewanella denitrificans OS217} PDB:
3ieh_A*
Length = 275
Score = 76.0 bits (186), Expect = 1e-16
Identities = 27/155 (17%), Positives = 56/155 (36%), Gaps = 26/155 (16%)
Query: 53 DELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHG 112
+++ F A++ +L ++ + D +A+ + ++ + + P + HG
Sbjct: 23 NDIDAFYAQLAEEVN---RLGLKKNTLGSVDSFAINLYQSASQRSD--LPSLLISSGFHG 77
Query: 113 DEVVGYELMNYLIEYLIINDGTDERVTRLINTTDIFIIPSLNPDGYSAAKEGSCNSLASF 172
+E G M + + L L ++ ++P +NP G+ A
Sbjct: 78 EEAAGPWGMLHFLRGL---------QPALFERVNLSLLPLVNPTGFKAGH---------- 118
Query: 173 VGRNNANGVDLNRNFPDQFDSSSERREQPLNVKKL 207
R N G + NR F + + L K L
Sbjct: 119 --RFNRFGENPNRGFTLENGKPTPNEHTSLEGKLL 151
>2qvp_A Uncharacterized protein; putative metallopeptidase, structural
genomics, joint center structural genomics, JCSG; HET:
MSE; 2.00A {Shewanella amazonensis}
Length = 275
Score = 68.2 bits (166), Expect = 8e-14
Identities = 24/155 (15%), Positives = 49/155 (31%), Gaps = 26/155 (16%)
Query: 53 DELTKFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHG 112
++ +F A + ++ L S L + ++ P A HG
Sbjct: 22 TDIQRFYSLLAIE-TERLGLGSKILGQAGH--HPLYLLQSPGQKAG--LPNLLISAGFHG 76
Query: 113 DEVVGYELMNYLIEYLIINDGTDERVTRLINTTDIFIIPSLNPDGYSAAKEGSCNSLASF 172
+E G + + + L L ++ ++P +NP G++
Sbjct: 77 EESAGPWGLLHFLSQL---------DGELFKRVNLSVLPLVNPTGFAKGH---------- 117
Query: 173 VGRNNANGVDLNRNFPDQFDSSSERREQPLNVKKL 207
R N G + NR F + + + + L
Sbjct: 118 --RFNELGENPNRGFFIENGKAKPGADTSAEGRIL 150
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics,
PSI-2, protein structure initiative; 2.10A {Rhodobacter
sphaeroides 2}
Length = 354
Score = 47.9 bits (113), Expect = 1e-06
Identities = 17/113 (15%), Positives = 34/113 (30%), Gaps = 25/113 (22%)
Query: 107 VANIHGDEVVGYELMNYLIEYLIIND--GTDERVTRLINTTDIFIIPSLNPDGYSAAKEG 164
+HGDE G ++ L L + G + ++P++N +
Sbjct: 59 TGGVHGDEYEGQIAISDLARRLRPEEVQGR------------VIMLPAVNMPAIQSDTR- 105
Query: 165 SCNSLASFVGRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISF 217
+ +G D+NR FP + + + P +
Sbjct: 106 ----------LSPVDGRDINRCFPGDPRGTFSQMLAHFLDSVILPMADISVDM 148
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics,
joint center for structural genomics, JCSG, prote
structure initiative; HET: MSE; 1.80A {Shewanella
amazonensis} PDB: 3lwu_A*
Length = 368
Score = 47.2 bits (111), Expect = 1e-06
Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 21/100 (21%)
Query: 107 VANIHGDEVVGYELMNYLIEYLIIND--GTDERVTRLINTTDIFIIPSLNPDGYSAAKEG 164
AN+HG EV G ++ L++ L + G I ++P NP G +
Sbjct: 39 QANVHGAEVQGNAVIYQLMKLLEHYELLGD------------ISLVPLANPLGINQ---- 82
Query: 165 SCNSLASFVGRNN-ANGVDLNRNFPDQFDSSSERREQPLN 203
S +GR + GV+ NR + D + ++ +
Sbjct: 83 --KSGEFTLGRFDPITGVNWNREYLDHGFNIEVWYQEHSH 120
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural
genomics, joint center for structural genomics, J
protein structure initiative, PSI-2; HET: MSE; 2.00A
{Ruegeria SP}
Length = 331
Score = 46.4 bits (109), Expect = 3e-06
Identities = 21/111 (18%), Positives = 35/111 (31%), Gaps = 21/111 (18%)
Query: 107 VANIHGDEVVGYELMNYLIEYLIINDGTDERVTRLINTTDIFIIPSLNPDGYSAAKEGSC 166
HGDE G + L D T + I+P N + A+
Sbjct: 55 TGANHGDEYEGPVALQELAATTRAEDVTGRLI----------IVPYFNYPAFRASAR--- 101
Query: 167 NSLASFVGRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISF 217
+ + +LNR FP + D + ++ + L P + F
Sbjct: 102 --------TSPIDRGNLNRAFPGRPDGTVTQKIADYFQRTLLPMADVAVDF 144
>2qj8_A MLR6093 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2,
hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Length = 332
Score = 43.7 bits (102), Expect = 2e-05
Identities = 23/111 (20%), Positives = 37/111 (33%), Gaps = 21/111 (18%)
Query: 107 VANIHGDEVVGYELMNYLIEYLIINDGTDERVTRLINTTDIFIIPSLNPDGYSAAKEGSC 166
HG+E+ G L L+++L + I+P +NP A
Sbjct: 51 TGGNHGNELQGPILARRLVKWLPEAQRCGRII----------IVPEINPLAVQAWTR--- 97
Query: 167 NSLASFVGRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISF 217
+G +LNR FP + D S R + L P ++
Sbjct: 98 --------NTPIDGKNLNRVFPGRSDGSVSERIADAISRLLLPVVDTVLDL 140
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.5 bits (99), Expect = 7e-05
Identities = 31/193 (16%), Positives = 65/193 (33%), Gaps = 60/193 (31%)
Query: 21 LCFLLCWVGCTTPVLVNNDPEPFLENPHYLSFDELTKFLVAAAQQNPSKVKLHSI--GKS 78
L + W ++ +D + ++L K+ + Q S + + SI
Sbjct: 392 LSLI--WFD-----VIKSDVMVVV--------NKLHKYSLVEKQPKESTISIPSIYLELK 436
Query: 79 VQNRDLWAL--------QISRNVASGRNLLKPMFKYVANIHGDEVVGYELMN-------- 122
V+ + +AL I + S + + +Y + H +G+ L N
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS-H----IGHHLKNIEHPERMT 491
Query: 123 -----YL----IEYLIINDGTDERVT-RLINT-TDI-----FIIPSLNPDGYSAAKEGSC 166
+L +E I +D T + ++NT + +I + E
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN------DPKYERLV 545
Query: 167 NSLASFVGRNNAN 179
N++ F+ + N
Sbjct: 546 NAILDFLPKIEEN 558
Score = 29.8 bits (66), Expect = 0.89
Identities = 24/170 (14%), Positives = 47/170 (27%), Gaps = 62/170 (36%)
Query: 97 RNLLKPMF--KYVANIHGDEVVGYE---LMNYLIEYLIINDGTDERVTRLI--------N 143
+++L +F +V N +V L I+++I++ RL
Sbjct: 19 KDIL-SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE 77
Query: 144 TTDIFI--------------------IPSLNPDGYSAAKEGSCNSLASFVGRNNANGVDL 183
F+ PS+ Y ++ N F N +
Sbjct: 78 MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN------V 131
Query: 184 NRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLSGNLHGKK 233
+R + + R+ + +L P VL + G
Sbjct: 132 SR--LQPYL---KLRQ---ALLELRPA-----------KNVL---IDGVL 159
>1yw6_A Succinylglutamate desuccinylase; alpha-beta protein., structural
genomics, PSI, protein structure initiative; 3.10A
{Escherichia coli} SCOP: c.56.5.7
Length = 335
Score = 39.3 bits (91), Expect = 6e-04
Identities = 24/147 (16%), Positives = 46/147 (31%), Gaps = 29/147 (19%)
Query: 63 AQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHGDEVVGYELMN 122
+ P + G + L+++ L+ A IHG+E E+++
Sbjct: 15 TGKKPVITEREINGVRWRWLGDGVLELTPLTPPQGALV-----ISAGIHGNETAPVEMLD 69
Query: 123 YLIEYLIINDGTDERVTRLINTTDIFIIPSLNPDGYSAAKEGSCNSLASFVGRNNANGVD 182
L+ + + + I+ NP K R D
Sbjct: 70 ALLGAI-------SHGEIPLRWRLLVIL--GNPPALKQGK------------RY--CHSD 106
Query: 183 LNRNFPDQFDSSSERREQPLNVKKLEP 209
+NR F ++ +E E ++LE
Sbjct: 107 MNRMFGGRWQLFAESGETCR-ARELEQ 132
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.007
Identities = 23/156 (14%), Positives = 45/156 (28%), Gaps = 59/156 (37%)
Query: 52 FDELTKFLVAA--------AQQNPSKVKLHSIGKSVQN-RDLWALQISRNVASGRNLLKP 102
++ NP + +H G+ + R+ ++ I + G+ +
Sbjct: 1646 WNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEK 1705
Query: 103 MFKYVA------NIHGDEVVGYELMN---------YLIEYLIINDGTDERVTRLINTTDI 147
+FK + ++ L++ L+E D +
Sbjct: 1706 IFKEINEHSTSYTFRSEK----GLLSATQFTQPALTLMEKAAFEDLKSK----------- 1750
Query: 148 FIIP--------SLNPDG-YSAAKEGSCNSLASFVG 174
+IP SL G Y+A LAS
Sbjct: 1751 GLIPADATFAGHSL---GEYAA--------LASLAD 1775
Score = 34.6 bits (79), Expect = 0.032
Identities = 30/156 (19%), Positives = 54/156 (34%), Gaps = 41/156 (26%)
Query: 51 SFDELTKFLVAAAQQNPSKVKLHSIGKSVQ----NRDLWALQISRNVASGRNLLKPMFKY 106
SF + + L IG N L + ++ + + PM
Sbjct: 291 SFFVSVRKAITV---------LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLS- 340
Query: 107 VANIHGDEVVGY-ELMNYLIEYLIINDGTDERVT-RLINTTDIFIIPSLNPDGYSAAKEG 164
++N+ ++V Y N +L ++V L+N ++ S G + G
Sbjct: 341 ISNLTQEQVQDYVNKTN---SHL----PAGKQVEISLVNGAKNLVV-S----GPPQSLYG 388
Query: 165 SCNSLASFVGRNNA--NGVDLNRNFPDQFDSSSERR 198
+L R +G+D +R P F SER+
Sbjct: 389 LNLTL-----RKAKAPSGLDQSR-IP--F---SERK 413
>1yw4_A Succinylglutamate desuccinylase; alpha-beta protein, structural
genomics, PSI, protein struct initiative; 2.00A
{Chromobacterium violaceum} SCOP: c.56.5.7
Length = 341
Score = 35.8 bits (82), Expect = 0.009
Identities = 18/122 (14%), Positives = 32/122 (26%), Gaps = 28/122 (22%)
Query: 110 IHGDEVVGYELMNYLIEYLIINDGTDE-RVTRLINTTDIFIIPSLNPDGYSAAKEGSCNS 168
+HG+E E+++ ++ + R+ + N D
Sbjct: 55 VHGNETAPIEVVDGMLTDIAAGQLALNCRLLVMFA----------NLDAIRQGV------ 98
Query: 169 LASFVGRNNANGVDLNRNFPDQFDSSSERREQPLNVKKLEPETLAMISFIKNNPFVLSGN 228
R D+NR F E E +LE + +
Sbjct: 99 ------RYGNY--DMNRLFNGAHARHPELPESVR-AAELETLAAEFFAGARARKLHYD-- 147
Query: 229 LH 230
LH
Sbjct: 148 LH 149
>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics,
PSI, protein structure initiative; 2.33A {Vibrio
parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A
Length = 350
Score = 35.7 bits (82), Expect = 0.009
Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 24/90 (26%)
Query: 110 IHGDEVVGYELMNYLIEYLIINDGTDERVTRLINTTDIFIIPSLNPDGYSAAKEGSCNSL 169
IHGDE EL++ +I+ + G + R + +P+ A
Sbjct: 62 IHGDETAPMELVDSIIKDIE--SGFQKVDARC-------LFIIAHPESTLAHT------- 105
Query: 170 ASFVGRNNANGVDLNRNFP-DQFDSSSERR 198
R +LNR F + + + E
Sbjct: 106 -----RFLEE--NLNRLFDEKEHEPTKELA 128
>3nh4_A Aspartoacylase-2; mercapturates, hydrolase; 2.00A {Mus musculus}
PDB: 3nh5_A 3nfz_A 3nh8_A*
Length = 327
Score = 35.2 bits (80), Expect = 0.012
Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 24/96 (25%)
Query: 107 VANIHGDEVVGYELMNYLIEYLIINDGTDERVTRLINTTDIFIIPSLNPDGYSAAKEGSC 166
HG+E+ G L Y ++ + R + + NP +A
Sbjct: 26 TGGTHGNEMCGVYLARYWLQNP-------GELQRPSFSAMPVLA---NPAATAACCR--- 72
Query: 167 NSLASFVGRNNANGVDLNRNFPDQFDSSSERREQPL 202
++ R DLNR+ F S+ + P
Sbjct: 73 -----YLDR------DLNRSCTLTFLGSTATPDDPY 97
>2gu2_A ASPA protein; aspartoacylase family, aminoacylase-2, ACY-2,
ACY2_RAT, STRU genomics, PSI, protein structure
initiative; HET: MSE; 1.80A {Rattus norvegicus} SCOP:
c.56.5.7 PDB: 2q4z_A 2i3c_A 2q51_A 2o4h_A* 2o53_A
Length = 312
Score = 34.4 bits (78), Expect = 0.025
Identities = 14/95 (14%), Positives = 25/95 (26%), Gaps = 24/95 (25%)
Query: 107 VANIHGDEVVGYELMNYLIEYLIINDGTDERVTRLINTTDIFIIPSLNPDGYSAAKEGSC 166
HG+E+ G L+ + ++ + NP
Sbjct: 16 FGGTHGNELTGVFLVTHWLKNGA----------EVHRAGLEVKPFITNPRAVEKCTR--- 62
Query: 167 NSLASFVGRNNANGVDLNRNFPDQFDSSSERREQP 201
++ DLNR F + S + P
Sbjct: 63 -----YIDC------DLNRVFDLENLSKEMSEDLP 86
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.73
Identities = 6/29 (20%), Positives = 13/29 (44%), Gaps = 14/29 (48%)
Query: 196 ERREQPLNVKKLE-------PET---LAM 214
E++ +KKL+ ++ LA+
Sbjct: 18 EKQA----LKKLQASLKLYADDSAPALAI 42
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA
repair, DNA-binding; HET: DNA DOC DCP; 1.92A
{Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A*
3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Length = 786
Score = 29.3 bits (66), Expect = 1.3
Identities = 23/133 (17%), Positives = 48/133 (36%), Gaps = 16/133 (12%)
Query: 12 TFGTYIAISLCFLL-------CWVGCTTP--VLVNNDPEPF-LENPHY--LSFD-ELT-- 56
+ + +L+ WV +VN +P P +S D E T
Sbjct: 106 VYEADVRPPERYLMERFITSPVWVEGDMHNGTIVNARLKPHPDYRPPLKWVSIDIETTRH 165
Query: 57 KFLVAAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHGDEVV 116
L + + ++ +G + ++ VAS LL+ + + AN D ++
Sbjct: 166 GELYCIGLEGCGQRIVYMLGPENGDASSLDFEL-EYVASRPQLLEKLNAWFANYDPDVII 224
Query: 117 GYELMNYLIEYLI 129
G+ ++ + + L
Sbjct: 225 GWNVVQFDLRMLQ 237
>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc
binding, metal binding protein; 3.00A {Saccharomyces
cerevisiae} PDB: 3vh2_A
Length = 598
Score = 28.6 bits (64), Expect = 1.9
Identities = 33/143 (23%), Positives = 51/143 (35%), Gaps = 30/143 (20%)
Query: 7 VLGTGTFGTYIAISLCFLLCWVGCTTPVLVNNDPEPFLENPH----YLSFDELTKFLVAA 62
+LG GT G Y++ L+ W G V+N NP Y +F++ K
Sbjct: 332 LLGAGTLGCYVSR---ALIAW-GVRKITFVDNG-TVSYSNPVRQALY-NFEDCGKPKAEL 385
Query: 63 AQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHGDEVVGYELMN 122
A L I + A+G L PM + + ++ +
Sbjct: 386 AAA-----SLKRIFPLMD-------------ATGVKLSIPMIGHKLVNEEAQHKDFDRLR 427
Query: 123 YLI-EYLIINDGTDERVTR-LIN 143
LI E+ II D R +R L +
Sbjct: 428 ALIKEHDIIFLLVDSRESRWLPS 450
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A
{Human herpesvirus 1} PDB: 1dml_B*
Length = 1193
Score = 28.3 bits (62), Expect = 3.2
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 97 RNLLKPMFKYVANIHGDEVVGYELMNYLIEYLI 129
+L V + V GY ++N+ +L+
Sbjct: 402 FEMLLAFMTLVKQYGPEFVTGYNIINFDWPFLL 434
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative
splicing, cell adhesion, coiled coil, EGF-like domain,
extracellular matrix; 2.40A {Homo sapiens}
Length = 100
Score = 26.6 bits (59), Expect = 3.6
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 119 ELMNYLIEYLIINDGTDERVTRLINTTDIFIIPSLNPD 156
+ L+ + ND +DE L ++ + +L P+
Sbjct: 28 PIEGILVTFGRKNDPSDETTVDLTSSITSLTLTNLEPN 65
>3qho_A Endoglucanase, 458AA long hypothetical endo-1,4-beta-glucanase;
cellulase, catalytic domain, hydrolase; HET: CTT; 1.65A
{Pyrococcus horikoshii} PDB: 3axx_A* 2zum_A 2zun_A*
3qhm_A* 3qhn_A*
Length = 458
Score = 27.1 bits (59), Expect = 5.8
Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 13/101 (12%)
Query: 26 CWVGCTTPVLVNNDPEPFLENPHYLSFDELTKFLVAAAQQNPSKVKL--HSIGKSVQNRD 83
T P+ ++ P L L ++ + ++ A V L H IG +
Sbjct: 109 SVKPGTQPIGIDYSKNPDLRGLDSL---QIMEKIIKKAGDLGIFVLLDYHRIGCTHIEPL 165
Query: 84 LWALQISRNVASGRNLLKPMFKYVANIHGDE--VVGYELMN 122
+ S + VA G V+G +L N
Sbjct: 166 WYTEDFSEEDF------INTWIEVAKRFGKYWNVIGADLKN 200
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome
formation, non-canonical E1, ATP BI UBL, ATG8, ATG12,
ATG10, ATG3, UBL activation, thiolation; 1.91A
{Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Length = 340
Score = 26.9 bits (60), Expect = 6.0
Identities = 34/145 (23%), Positives = 52/145 (35%), Gaps = 34/145 (23%)
Query: 7 VLGTGTFGTYIAISLCFLLCW-VGCTTPVLVNNDP-EPFLENPH----YLSFDELTKFLV 60
+LG GT G Y++ L+ W V T V+N NP Y +F++ K
Sbjct: 39 LLGAGTLGCYVSR---ALIAWGVRKIT--FVDNGTVS--YSNPVRQALY-NFEDCGKPKA 90
Query: 61 AAAQQNPSKVKLHSIGKSVQNRDLWALQISRNVASGRNLLKPMFKYVANIHGDEVVGYEL 120
A L I + A+G L PM + + ++
Sbjct: 91 ELAAA-----SLKRIFPLMD-------------ATGVKLSIPMIGHKLVNEEAQHKDFDR 132
Query: 121 MNYLI-EYLIINDGTDERVTR-LIN 143
+ LI E+ II D R +R L +
Sbjct: 133 LRALIKEHDIIFLLVDSRESRWLPS 157
>3ocr_A Class II aldolase/adducin domain protein; PSI-2, midwest center
for structural genomics, protein struc initiative,
MCSG, lyase; 1.95A {Pseudomonas syringae PV}
Length = 273
Score = 26.5 bits (59), Expect = 8.2
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 36 VNNDPEPFLENPHYLSFDELT 56
V E FL N L FDE+T
Sbjct: 62 VPGPDEHFLINAFGLLFDEIT 82
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.408
Gapped
Lambda K H
0.267 0.0505 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,643,860
Number of extensions: 209668
Number of successful extensions: 607
Number of sequences better than 10.0: 1
Number of HSP's gapped: 531
Number of HSP's successfully gapped: 48
Length of query: 241
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 150
Effective length of database: 4,160,982
Effective search space: 624147300
Effective search space used: 624147300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.9 bits)